VHQ356
Library VH
(Link to library)
Clone ID VHQ356
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1|Contig-U12695-1
Original site URL
Representative seq. ID VHQ356P
(Link to Original site)
Representative DNA sequence
>VHQ356 (VHQ356Q) /CSM/VH/VHQ3-C/VHQ356Q.Seq.d/
ATTTTTTTATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGA
TTATGATGTAATAGTTTGTGGTGGTGGTCCAGNTGGTTTGGCTACTGCATACAGATGTGC
CAAAGCTGGAAAGAAAGTACTTTGTCTCGAAAAATCACCATTCTTTAATGGAGGTGGTAG
TAGTGGTGATGTTGTTANAATGTTACGTACAANGTACACTGAAGATTATNTGGCCGATTT
AGCACATGAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGNTGAAGGTGATTT
AGTTTGGATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGXXXXXXXXXX
CAGTCCATCNCAATTTTTTCAATTGTTCCCNTCNCTTANTAAACCNTCCCCANATGGTAG
ATTCCNTTTAGNTGGNGAAGCAACATNTGTTCATCANGGNTGGGTCATTGGTTTTTTTAA
CTNTGCCTATNGNTCAGTCGATCNCATTTTTCAAGTTGAAGGTNTTNATGAGTTACGNGC
CNAANTACGTTTCAATTGGGGNTTNATCGANGAAGTTGAANATCCTCAANATGATCAACA
ATATGTTGACCCNCATCNCAATTTAAGTGGTCCAAATGNTAAAAAATTCAGATCAAATGT
ATCNCAAGTTGCCNTTCAACCAANATTNAAAGNTCCAANAAACTTTAAACCAANAAATAC
TGCTGNTAGTANTGGGGGTTTTAAATAAATCAAAACCNAATGTCNNTTATTNAATGAATT
TTTTTTTTTTAGAAAAAAAAAATAATAATAGTAATAATAAAAAAAGTAATAATAAAAACA
GTTATAATAATAATAAAAACAAGGAAAT
sequence update 2002.10.25
Translated Amino Acid sequence
ffyyfil*ALKKMREFLKDDYDVIVCGGGPXGLATAYRCAKAGKKVLCLEKSPFFNGGGS
SGDVVXMLRTXYTEDYXADLAHETLGLWKELGDDAXEGDLVWMTGLLNFGDPNYGA---

---SPSQFFQLFPSLXKPSPXGRFXLXGEATXVHXGWVIGFFNXAYXSVDXIFQVEGXXE
LRAXXRFNWGXIXEVEXPQXDQQYVDPHXNLSGPNXKKFRSNVSQVAXQPXXKXPXNFKP
XNTAXSXGGFK*iktxcxlxneffffrkkk******kk***kql****kqgn


Translated Amino Acid sequence (All Frames)
Frame A:
ifllfyfisfeenerifkr*l*cnslwwwsxwfgyciqmcqswkestlsrkitil*wrw*
*w*ccxnvtyxvh*rlxgrfst*npwtlertw**cx*r*fslddrspkfw*sklwc---

---qsixifsivpxxx*txpxw*ipfxwxsnxcssxxghwff*lclxxsrshfss*rxx*
vtxxxtfqlgxxrxs*xssx*stic*pxsqfkwskx*kiqikcixscxstxixxsxkl*t
xkycx*xwgf*inqnxmsxix*ifff*kkkiiiviikkviiktviiiiktrk

Frame B:
ffyyfil*ALKKMREFLKDDYDVIVCGGGPXGLATAYRCAKAGKKVLCLEKSPFFNGGGS
SGDVVXMLRTXYTEDYXADLAHETLGLWKELGDDAXEGDLVWMTGLLNFGDPNYGA---

---SPSQFFQLFPSLXKPSPXGRFXLXGEATXVHXGWVIGFFNXAYXSVDXIFQVEGXXE
LRAXXRFNWGXIXEVEXPQXDQQYVDPHXNLSGPNXKKFRSNVSQVAXQPXXKXPXNFKP
XNTAXSXGGFK*iktxcxlxneffffrkkk******kk***kql****kqgn

Frame C:
ffiilfykl*rk*enf*kmimm**fvvvvqxvwllhtdvpklerkyfvsknhhslmevvv
vvmllxcyvqxtlkixwpi*hmkpldsgknlvmmlxkvi*fg*qvs*ilviqimvq---

---vhxnffncsxxlxnxpxmvdsx*xxkqhxfixxgslvfltxpxxqsixffklkvxms
yxpxyvsigxxsxklxilxminnmltxixi*vvqmxknsdqmyxklpfnqxxkxqxtlnq
xillxvxgvlnkskpnvxyxmnffflekknnnsnnkksnnknsynnnknke

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHQ356 (VHQ356Q) /CSM/VH/VHQ3-C/VHQ356Q.Seq.d/ 1116 0.0
VHQ455 (VHQ455Q) /CSM/VH/VHQ4-C/VHQ455Q.Seq.d/ 603 e-171
VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/ 603 e-171
VHQ415 (VHQ415Q) /CSM/VH/VHQ4-A/VHQ415Q.Seq.d/ 603 e-171
VHQ355 (VHQ355Q) /CSM/VH/VHQ3-C/VHQ355Q.Seq.d/ 603 e-171
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/ 603 e-171
VHP659 (VHP659Q) /CSM/VH/VHP6-C/VHP659Q.Seq.d/ 603 e-171
VHO851 (VHO851Q) /CSM/VH/VHO8-C/VHO851Q.Seq.d/ 603 e-171
VHO717 (VHO717Q) /CSM/VH/VHO7-A/VHO717Q.Seq.d/ 603 e-171
VHO690 (VHO690Q) /CSM/VH/VHO6-D/VHO690Q.Seq.d/ 603 e-171

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427820) Dictyostelium discoideum cDNA clone:ddv63p13, 5' ... 617 e-172 1
(BJ427811) Dictyostelium discoideum cDNA clone:ddv63n14, 5' ... 601 e-167 1
(BJ427810) Dictyostelium discoideum cDNA clone:ddv63n13, 5' ... 601 e-167 1
(BJ427669) Dictyostelium discoideum cDNA clone:ddv63n04, 5' ... 601 e-167 1
(BJ427626) Dictyostelium discoideum cDNA clone:ddv63d06, 5' ... 601 e-167 1
(BJ427476) Dictyostelium discoideum cDNA clone:ddv62e16, 5' ... 601 e-167 1
(BJ427355) Dictyostelium discoideum cDNA clone:ddv62l01, 5' ... 601 e-167 1
(BJ426945) Dictyostelium discoideum cDNA clone:ddv60c24, 5' ... 601 e-167 1
(BJ426881) Dictyostelium discoideum cDNA clone:ddv60f14, 5' ... 601 e-167 1
(BJ426719) Dictyostelium discoideum cDNA clone:ddv60b05, 5' ... 601 e-167 1
dna update 2008.12.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c... 107 5e-22
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik... 72 3e-11
BC158505_1(BC158505|pid:none) Xenopus tropicalis pipecolic acid ... 58 5e-07
CP000542_3958(CP000542|pid:none) Verminephrobacter eiseniae EF01... 58 5e-07
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase; S... 56 2e-06
CR859295_1(CR859295|pid:none) Pongo abelii mRNA; cDNA DKFZp469L1... 56 2e-06
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas... 56 2e-06
CP000749_2730(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 55 3e-06
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c... 55 3e-06
BC027622_1(BC027622|pid:none) Homo sapiens pipecolic acid oxidas... 55 3e-06
protein update 2009. 7.22
PSORT

psg: 0.67 gvh: 0.46 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
20.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for VHQ356 is cyt

5' end seq. ID VHQ356F
5' end seq.
>VHQ356F.Seq
ATTTTTTTATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGA
TTATGATGTAATAGTTTGTGGTGGTGGTCCAGNTGGTTTGGCTACTGCATACAGATGTGC
CAAAGCTGGAAAGAAAGTACTTTGTCTCGAAAAATCACCATTCTTTAATGGAGGTGGTAG
TAGTGGTGATGTTGTTANAATGTTACGTACAANGTACACTGAAGATTATNTGGCCGATTT
AGCACATGAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGNTGAAGGTGATTT
AGTTTGGATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGNNNNNNNNNN
Length of 5' end seq. 360
3' end seq. ID VHQ356Z
3' end seq.
>VHQ356Z.Seq
NNNNNNNNNNCAGTCCATCNCAATTTTTTCAATTGTTCCCNTCNCTTANTAAACCNTCCC
CANATGGTAGATTCCNTTTAGNTGGNGAAGCAACATNTGTTCATCANGGNTGGGTCATTG
GTTTTTTTAACTNTGCCTATNGNTCAGTCGATCNCATTTTTCAAGTTGAAGGTNTTNATG
AGTTACGNGCCNAANTACGTTTCAATTGGGGNTTNATCGANGAAGTTGAANATCCTCAAN
ATGATCAACAATATGTTGACCCNCATCNCAATTTAAGTGGTCCAAATGNTAAAAAATTCA
GATCAAATGTATCNCAAGTTGCCNTTCAACCAANATTNAAAGNTCCAANAAACTTTAAAC
CAANAAATACTGCTGNTAGTANTGGGGGTTTTAAATAAATCAAAACCNAATGTCNNTTAT
TNAATGAATTTTTTTTTTTTAGAAAAAAAAAATAATAATAGTAATAATAAAAAAAGTAAT
AATAAAAACAGTTATAATAATAATAAAAACAAGGAAAT
Length of 3' end seq. 518
Connected seq. ID VHQ356P
Connected seq.
>VHQ356P.Seq
ATTTTTTTATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGA
TTATGATGTAATAGTTTGTGGTGGTGGTCCAGNTGGTTTGGCTACTGCATACAGATGTGC
CAAAGCTGGAAAGAAAGTACTTTGTCTCGAAAAATCACCATTCTTTAATGGAGGTGGTAG
TAGTGGTGATGTTGTTANAATGTTACGTACAANGTACACTGAAGATTATNTGGCCGATTT
AGCACATGAAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGNTGAAGGTGATTT
AGTTTGGATGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAG----------
CAGTCCATCNCAATTTTTTCAATTGTTCCCNTCNCTTANTAAACCNTCCCCANATGGTAG
ATTCCNTTTAGNTGGNGAAGCAACATNTGTTCATCANGGNTGGGTCATTGGTTTTTTTAA
CTNTGCCTATNGNTCAGTCGATCNCATTTTTCAAGTTGAAGGTNTTNATGAGTTACGNGC
CNAANTACGTTTCAATTGGGGNTTNATCGANGAAGTTGAANATCCTCAANATGATCAACA
ATATGTTGACCCNCATCNCAATTTAAGTGGTCCAAATGNTAAAAAATTCAGATCAAATGT
ATCNCAAGTTGCCNTTCAACCAANATTNAAAGNTCCAANAAACTTTAAACCAANAAATAC
TGCTGNTAGTANTGGGGGTTTTAAATAAATCAAAACCNAATGTCNNTTATTNAATGAATT
TTTTTTTTTTAGAAAAAAAAAATAATAATAGTAATAATAAAAAAAGTAATAATAAAAACA
GTTATAATAATAATAAAAACAAGGAAAT
Length of connected seq. 858
Full length Seq ID -
Full length Seq. -
Length of full length seq. -