VSD136
Library VS
(Link to library)
Clone ID VSD136
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13202-1
Original site URL
Representative seq. ID VSD136E
(Link to Original site)
Representative DNA sequence
>VSD136 (VSD136Q) /CSM/VS/VSD1-B/VSD136Q.Seq.d/
AAATCAAATAAAAAAAAATATAAAATGAGAGTATTATTATCATTAGTTGTAATTTTATTC
ATTATAAATTCAGCCTTTGCTGTAAAGATTAATATTGGTCGTCCAACCAAATCACATAAA
ACTATCCATCACGAAACTTGGGTAGAAGAACAAACTGATCAATTCGATAATATTAAAGTT
GGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAGACCAAAACTTCAAATTAAATCTTAT
GATCCATTAGGAGTTCAAATTCCAACTTCTTTCAATGCTCAAACCAACTGGCCAAATTGT
ACTACCATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGCT
ACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTTT
ATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTCT
GCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAATT
CCAACTTGTCCACCAGCTCAACAACCATGTTTAAATTTTGTCAACACTCCATCATGTACT
AAAGAGTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGACAAACATAAAATGGCTAAA
ATTTATTCTTTCGACTCTGATGAAGCAATCATGCAAGAAATTGTTACTAATGGTCCAGTC
GAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAAATCTGGTGTTTACGTCCAC
ACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTTTCGGTACCTTAAAT
GGTGTTGATTACTATGCCGCTAACAACCAATGGACAACTTCATGGGGTGATAATGGAACT
TTCTTAATCAAACGTGGTGATTGCGGTATCTCTGATGACGTTGTTGCGGTTTACCATAAA
TAAAAATAAGTTTTAAACATTTT
sequence update 2001. 3.25
Translated Amino Acid sequence
KSNKKKYKMRVLLSLVVILFIINSAFAVKINIGRPTKSHKTIHHETWVEEQTDQFDNIKV
GQLLGFKRSPNRPKLQIKSYDPLGVQIPTSFNAQTNWPNCTTISQIQNQARCGSCWAFGA
TESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAFSAWNWLRKQGAVSEECLPYTI
PTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKHKMAKIYSFDSDEAIMQEIVTNGPV
EACFTVFEDFLAYKSGVYVHTTGKDLGGHCVKLVGFGTLNGVDYYAANNQWTTSWGDNGT
FLIKRGDCGISDDVVAVYHK*k*vlni


Translated Amino Acid sequence (All Frames)
Frame A:
KSNKKKYKMRVLLSLVVILFIINSAFAVKINIGRPTKSHKTIHHETWVEEQTDQFDNIKV
GQLLGFKRSPNRPKLQIKSYDPLGVQIPTSFNAQTNWPNCTTISQIQNQARCGSCWAFGA
TESATDRLCIHNNENVQLSFMDMVTCDETDNGCEGGDAFSAWNWLRKQGAVSEECLPYTI
PTCPPAQQPCLNFVNTPSCTKECQSNSSLIYSQDKHKMAKIYSFDSDEAIMQEIVTNGPV
EACFTVFEDFLAYKSGVYVHTTGKDLGGHCVKLVGFGTLNGVDYYAANNQWTTSWGDNGT
FLIKRGDCGISDDVVAVYHK*k*vlni


Frame B:
nqikknik*eyyyh*l*fysl*iqpll*rlilvvqpnhiklsitklg*knklinsiilkl
any*vsrevqtdqnfklnlmih*efkfqllsmlkptgqivlplvrfkikqdvvlvgllvl
qnqllivyvftimkmfn*vlwiwllvmklitvvkvvmpslhgig*eskvlyqknvfhiqf
qlvhqlnnhv*ilstlhhvlksvnqipl*filktnikwlkfilstlmkqsckklllmvqs
klvslslkislltnlvftstqlvki*vvtvlnslvsvp*mvlitmplttngqlhgvimel
s*snvviavslmtllrftinknkf*tf


Frame C:
ik*kki*nesiiiiscnfihykfslcckd*ywssnqit*nypsrnlgrrtn*sir*y*sw
piirfqekskqtktsn*il*sirssnsnffqcsnqlaklyyh*sdsksskmwfllgfwcy
risy*sfmysq**kcsikfygygyl**n**rl*rw*cllcmelvkkarccirrmssiyns
nlstssttmfkfcqhsimy*rvsikflfnlfsrqt*ng*nlffrl**snharncy*wssr
slfhcl*rfpclqiwclrphnw*rfrwslc*trwfrylkwc*llcr*qpmdnfmg**wnf
lnqtw*lryl**rccglp*ikisfkhf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD136 (VSD136Q) /CSM/VS/VSD1-B/VSD136Q.Seq.d/ 1913 0.0
SLH613 (SLH613Q) /CSM/SL/SLH6-A/SLH613Q.Seq.d/ 1899 0.0
VFD555 (VFD555Q) /CSM/VF/VFD5-C/VFD555Q.Seq.d/ 1897 0.0
VFI438 (VFI438Q) /CSM/VF/VFI4-B/VFI438Q.Seq.d/ 1842 0.0
VFI213 (VFI213Q) /CSM/VF/VFI2-A/VFI213Q.Seq.d/ 1842 0.0
VFH406 (VFH406Q) /CSM/VF/VFH4-A/VFH406Q.Seq.d/ 1834 0.0
VFE574 (VFE574Q) /CSM/VF/VFE5-D/VFE574Q.Seq.d/ 1826 0.0
VFI120 (VFI120Q) /CSM/VF/VFI1-A/VFI120Q.Seq.d/ 1808 0.0
VFK428 (VFK428Q) /CSM/VF/VFK4-B/VFK428Q.Seq.d/ 1784 0.0
VFN645 (VFN645Q) /CSM/VF/VFN6-B/VFN645Q.Seq.d/ 1737 0.0

own update 2001.12. 5
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG132206|BG132206.1 EST465098 tomato crown gall Lycopersicon esculentum cDNA clone cTOE6F18 5' sequence, mRNA sequence. 54 7e-05 2
BF187223|BF187223.1 EST443510 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA39F1 5' sequence, mRNA sequence. 54 0.003 1
AI772499|AI772499.1 EST253599 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER2J6, mRNA sequence. 54 0.003 1
CF507409|CF507409.1 USDA-FP_122000-910 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-57_C01 5', mRNA sequence. 54 0.003 1
BE436257|BE436257.1 EST407335 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG31A14, mRNA sequence. 54 0.003 1
CB290208|CB290208.1 UCRCS01_01aa10_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01aa10, mRNA sequence. 54 0.003 1
CB292489|CB292489.1 UCRCS01_04cd07_g1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_04cd07, mRNA sequence. 54 0.003 1
BE433115|BE433115.1 EST399644 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG12E22, mRNA sequence. 54 0.003 1
BM413574|BM413574.1 EST587901 tomato breaker fruit Lycopersicon esculentum cDNA clone cLEG63F18 5' end, mRNA sequence. 54 0.003 1
BI933918|BI933918.1 EST553807 tomato flower, anthesis Lycopersicon esculentum cDNA clone cTOD18C22 5' end, mRNA sequence. 54 0.003 1
dna update 2003. 9.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QD9) RecName: Full=Cathepsin B; EC=3.4.22.1; AltNam... 627 e-178
AC149038_4(AC149038|pid:none) Medicago truncatula chromosome 7 c... 239 1e-61
(P00787) RecName: Full=Cathepsin B; EC=3.4.22.1; AltNam... 235 2e-60
AB377273_1(AB377273|pid:none) Raphanus sativus CatB mRNA for cat... 235 2e-60
BC072490_1(BC072490|pid:none) Rattus norvegicus cathepsin B, mRN... 234 4e-60
(P07688) RecName: Full=Cathepsin B; EC=3.4.22.1; AltNam... 234 4e-60
M11305_1(M11305|pid:none) Rat cathepsin B mRNA, 3' end. 233 6e-60
AF083797_1(AF083797|pid:none) Arabidopsis thaliana clone sps897 ... 233 8e-60
(A1E295) RecName: Full=Cathepsin B; EC=3.4.22.1; Contai... 233 1e-59
AC149038_3(AC149038|pid:none) Medicago truncatula chromosome 7 c... 232 1e-59
protein update 2009. 7.29
PSORT

psg: 1.00 gvh: 0.68 alm: 0.46 top: 0.40 tms: 0.00 mit: 0.41 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
12.0 %: mitochondrial
8.0 %: endoplasmic reticulum
4.0 %: cytoplasmic
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: nuclear

>> prediction for VSD136 is exc

5' end seq. ID VSD136F
5' end seq.
>VSD136F.Seq
AAATCAAATAAAAAAAAATATAAAATGAGAGTATTATTATCATTAGTTGTAATTTTATTC
ATTATAAATTCAGCCTTTGCTGTAAAGATTAATATTGGTCGTCCAACCAAATCACATAAA
ACTATCCATCACGAAACTTGGGTAGAAGAACAAACTGATCAATTCGATAATATTAAAGTT
GGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAGACCAAAACTTCAAATTAAATCTTAT
GATCCATTAGGAGTTCAAATTCCAACTTCTTTCAATGCTCAAACCAACTGGCCAAATTGT
ACTACCATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGCT
ACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTTT
ATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTCT
GCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAAT-
---------
Length of 5' end seq. 539
3' end seq. ID VSD136Z
3' end seq.
>VSD136Z.Seq
----------AAGTTTTATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAG
GTGGTGATGCCTTCTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAAT
GTCTTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCATGTTTAAATTTTGTCA
ACACTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGACA
AACATAAAATGGCTAAAATTTATTCTTTCGACTCTGATGAAGCAATCATGCAAGAAATTG
TTACTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAAAT
CTGGTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGTTG
GTTTCGGTACCTTAAATGGTGTTGATTACTATGCCGCTAACAACCAATGGACAACTTCAT
GGGGTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTATCTCTGATGACGTTG
TTGCGGTTTACCATAAATAAAAATAAGTTTTAAACATTTT
Length of 3' end seq. 570
Connected seq. ID VSD136P
Connected seq.
>VSD136P.Seq
AAATCAAATAAAAAAAAATATAAAATGAGAGTATTATTATCATTAGTTGTAATTTTATTC
ATTATAAATTCAGCCTTTGCTGTAAAGATTAATATTGGTCGTCCAACCAAATCACATAAA
ACTATCCATCACGAAACTTGGGTAGAAGAACAAACTGATCAATTCGATAATATTAAAGTT
GGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAGACCAAAACTTCAAATTAAATCTTAT
GATCCATTAGGAGTTCAAATTCCAACTTCTTTCAATGCTCAAACCAACTGGCCAAATTGT
ACTACCATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGCT
ACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTTT
ATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTCT
GCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAAT-
---------AAGTTTTATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGG
TGGTGATGCCTTCTCTGCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATG
TCTTCCATATACAATTCCAACTTGTCCACCAGCTCAACAACCATGTTTAAATTTTGTCAA
CACTCCATCATGTACTAAAGAGTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGACAA
ACATAAAATGGCTAAAATTTATTCTTTCGACTCTGATGAAGCAATCATGCAAGAAATTGT
TACTAATGGTCCAGTCGAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAAATC
TGGTGTTTACGTCCACACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGTTGG
TTTCGGTACCTTAAATGGTGTTGATTACTATGCCGCTAACAACCAATGGACAACTTCATG
GGGTGATAATGGAACTTTCTTAATCAAACGTGGTGATTGCGGTATCTCTGATGACGTTGT
TGCGGTTTACCATAAATAAAAATAAGTTTTAAACATTTT
Length of connected seq. 1109
Full length Seq ID VSD136E
Full length Seq.
>VSD136E.Seq
AAATCAAATAAAAAAAAATATAAAATGAGAGTATTATTATCATTAGTTGTAATTTTATTC
ATTATAAATTCAGCCTTTGCTGTAAAGATTAATATTGGTCGTCCAACCAAATCACATAAA
ACTATCCATCACGAAACTTGGGTAGAAGAACAAACTGATCAATTCGATAATATTAAAGTT
GGCCAATTATTAGGTTTCAAGAGAAGTCCAAACAGACCAAAACTTCAAATTAAATCTTAT
GATCCATTAGGAGTTCAAATTCCAACTTCTTTCAATGCTCAAACCAACTGGCCAAATTGT
ACTACCATTAGTCAGATTCAAAATCAAGCAAGATGTGGTTCTTGTTGGGCTTTTGGTGCT
ACAGAATCAGCTACTGATCGTTTATGTATTCACAATAATGAAAATGTTCAATTAAGTTTT
ATGGATATGGTTACTTGTGATGAAACTGATAACGGTTGTGAAGGTGGTGATGCCTTCTCT
GCATGGAATTGGTTAAGAAAGCAAGGTGCTGTATCAGAAGAATGTCTTCCATATACAATT
CCAACTTGTCCACCAGCTCAACAACCATGTTTAAATTTTGTCAACACTCCATCATGTACT
AAAGAGTGTCAATCAAATTCCTCTTTAATTTATTCTCAAGACAAACATAAAATGGCTAAA
ATTTATTCTTTCGACTCTGATGAAGCAATCATGCAAGAAATTGTTACTAATGGTCCAGTC
GAAGCTTGTTTCACTGTCTTTGAAGATTTCCTTGCTTACAAATCTGGTGTTTACGTCCAC
ACAACTGGTAAAGATTTAGGTGGTCACTGTGTTAAACTCGTTGGTTTCGGTACCTTAAAT
GGTGTTGATTACTATGCCGCTAACAACCAATGGACAACTTCATGGGGTGATAATGGAACT
TTCTTAATCAAACGTGGTGATTGCGGTATCTCTGATGACGTTGTTGCGGTTTACCATAAA
TAAAAATAAGTTTTAAACATTTT
Length of full length seq. 983