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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD138
Library VS
(Link to library)
Clone ID VSD138
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13875-1
Original site URL
Representative seq. ID VSD138P
(Link to Original site)
Representative DNA sequence 
>VSD138 (VSD138Q) /CSM/VS/VSD1-B/VSD138Q.Seq.d/
ACAATATGAACAGCCAGCTGAAGAGCAATACGATCAAAGTGGTTATCTTCAAGCTAAAGC
ACTTTACGATTATAATGGTGAAAATGATGGTGATCTTTCTTTCAGAGAAGGTGATATCAT
TACAATTTTAGATCAAAGTGATCCAGATGGTTGGTGGCAAGGATCTTTACCAACAGGTGA
ACAAGGTTTCTTCCCATCTAATTTCGTACAACAATTGTAAGAAAATTAAGATATCCTAAC
AATATGCTAATGGTATTTACAAATATCCAAATACTTATTATCTGAATTGATTAAAAAAAA
TAAAATAAAATAAAATGTCACAATAAACTATTTCCATTTGTTTTCCTTAAAAAAAAAAXX
XXXXXXXXACAATATGAACAGCCAGCTGAAGAGCAATACGATCAAAGTGGTTATCTTCAA
GCTAAAGCACTTTACGATTATAATGGTGAAAATGATGGTGATCTTTCTTTCAGAGAAGGT
GATATCATTACAATTTTAGATCAAAGTGATCCAGATGGTTGGTGGCAAGGATCTTTACCA
ACAGGTGAACAAGGTTTCTTCCCATCTAATTTCGTACAACAATTGTAAGAAAATTAAGAT
ATCCTAACAATATGCTAATGGTATTTACAAATATCCAAATACTTATTATCTGAATNATTA
AAAAAAATAAAATAAAATAAAATGTCACAATAAACTATTTCCATTT
sequence update 2001. 3.22
Translated Amino Acid sequence 
ti*tas*rairskwlsss*stlrl*w*k*w*sffqrr*yhynfrsk*srwlvariftnr*
trflpi*frttivrklrypnnmlmvftniqilii*id*kk*NKIKCHNKLFPFVFLKKK-
--

---QYEQPAEEQYDQSGYLQAKALYDYNGENDGDLSFREGDIITILDQSDPDGWWQGSLP
TGEQGFFPSNFVQQL*en*diltic*wylqiskyllsexlkkik*nkmsq*tisi
Translated Amino Acid sequence (All Frames) 
Frame A:
ti*tas*rairskwlsss*stlrl*w*k*w*sffqrr*yhynfrsk*srwlvariftnr*
trflpi*frttivrklrypnnmlmvftniqilii*id*kk*NKIKCHNKLFPFVFLKKK-
--

---ti*tas*rairskwlsss*stlrl*w*k*w*sffqrr*yhynfrsk*srwlvarift
nr*trflpi*frttivrklrypnnmlmvftniqilii*xikknkik*nvtinyfh

Frame B:
qyeqpaeeqydqsgylqakalydyngendgdlsfregdiitildqsdpdgwwqgslptge
qgffpsnfvqql*en*diltic*wylqiskyllselikknkik*nvtinyfhlfslkkk-
--

---QYEQPAEEQYDQSGYLQAKALYDYNGENDGDLSFREGDIITILDQSDPDGWWQGSLP
TGEQGFFPSNFVQQL*en*diltic*wylqiskyllsexlkkik*nkmsq*tisi

Frame C:
nmnsqlksntikvvifklkhftiimvkmmviflsekvislqf*ikviqmvggkdlyqqvn
kvsshlisynnckkikis*qyangiykypntyyln*lkkik*nkmsq*tisicfp*kk--
-

---nmnsqlksntikvvifklkhftiimvkmmviflsekvislqf*ikviqmvggkdlyq
qvnkvsshlisynnckkikis*qyangiykypntyylnx*kk*nkikchnklfpf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD138 (VSD138Q) /CSM/VS/VSD1-B/VSD138Q.Seq.d/                        577   e-164
SLG679 (SLG679Q) /CSM/SL/SLG6-D/SLG679Q.Seq.d/                        577   e-164
SLE687 (SLE687Q) /CSM/SL/SLE6-D/SLE687Q.Seq.d/                        577   e-164
SLC869 (SLC869Q) /CSM/SL/SLC8-C/SLC869Q.Seq.d/                        577   e-164
SLB522 (SLB522Q) /CSM/SL/SLB5-A/SLB522Q.Seq.d/                        577   e-164
VSC386 (VSC386Q) /CSM/VS/VSC3-D/VSC386Q.Seq.d/                        571   e-162
SFJ769 (SFJ769Q) /CSM/SF/SFJ7-C/SFJ769Q.Seq.d/                        559   e-158
SFB175 (SFB175Q) /CSM/SF/SFB1-D/SFB175Q.Seq.d/                        559   e-158
AFH683 (AFH683Q) /CSM/AF/AFH6-D/AFH683Q.Seq.d/                        559   e-158
AFI257 (AFI257Q) /CSM/AF/AFI2-C/AFI257Q.Seq.d/                        557   e-158
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   319  e-160  6
BX571961|BX571961.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-205O12.    46  1e-05  2
BX640455|BX640455.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46  0.11  2
AC139182|AC139182.2 Mus musculus chromosome UNK clone RP24-125O22, WORKING DRAFT SEQUENCE, 7 unordered pieces.    42  0.15  3
AB062089|AB062089.1 Arabidopsis thaliana DNA, chromosome 1 centromere region, BAC clone:F5E12.    38  0.36  2
BX005297|BX005297.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-271B8.    38  0.41  2
AL929276|AL929276.7 Zebrafish DNA sequence from clone CH211-59H6.    38  0.54  3
AQ606861|AQ606861.1 HS_5404_B2_G03_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=980 Col=6 Row=N, genomic survey sequence.    46  0.59  1
AL928880|AL928880.5 Zebrafish DNA sequence from clone CH211-69P21 in linkage group 7.    46  0.59  1
AC020553|AC020553.4 Homo sapiens BAC clone RP11-462D9 from 8, complete sequence.    32  0.61  7
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_30(AC116330|pid:none) Dictyostelium discoideum chromoso...   156   5e-37
(Q557J6) RecName: Full=Drebrin-like protein; AltName: Full=Actin...   156   5e-37
BC106271_1(BC106271|pid:none) Xenopus laevis hypothetical protei...    64   3e-09
CR759992_1(CR759992|pid:none) Xenopus tropicalis finished cDNA, ...    64   6e-09
(Q8AXV0) RecName: Full=Endophilin-A2; AltName: Full=Endophilin-2...    64   6e-09
AK167505_1(AK167505|pid:none) Mus musculus 14 days pregnant adul...    63   8e-09
(O88811) RecName: Full=Signal transducing adapter molecule 2;   ...    63   8e-09
(P19706) RecName: Full=Myosin heavy chain IB; AltName: Full=Myos...    63   8e-09
MWAXIB(JQ0095;B34448)myosin heavy chain IB - Acanthamoeba castel...    63   8e-09
(O35964) RecName: Full=Endophilin-A2; AltName: Full=Endophilin-2...    63   8e-09
protein update 2009. 7.29
PSORT 

 psg: 0.86  gvh: 0.30  alm: 0.61  top: 0.50  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSD138 is cyt
5' end seq. ID VSD138F
5' end seq. 
>VSD138F.Seq
ACAATATGAACAGCCAGCTGAAGAGCAATACGATCAAAGTGGTTATCTTCAAGCTAAAGC
ACTTTACGATTATAATGGTGAAAATGATGGTGATCTTTCTTTCAGAGAAGGTGATATCAT
TACAATTTTAGATCAAAGTGATCCAGATGGTTGGTGGCAAGGATCTTTACCAACAGGTGA
ACAAGGTTTCTTCCCATCTAATTTCGTACAACAATTGTAAGAAAATTAAGATATCCTAAC
AATATGCTAATGGTATTTACAAATATCCAAATACTTATTATCTGAATTGATTAAAAAAAA
TAAAATAAAATAAAATGTCACAATAAACTATTTCCATTTGTTTTCCTTAAAAAAAAAA--
--------
Length of 5' end seq. 358
3' end seq. ID VSD138Z
3' end seq. 
>VSD138Z.Seq
----------ACAATATGAACAGCCAGCTGAAGAGCAATACGATCAAAGTGGTTATCTTC
AAGCTAAAGCACTTTACGATTATAATGGTGAAAATGATGGTGATCTTTCTTTCAGAGAAG
GTGATATCATTACAATTTTAGATCAAAGTGATCCAGATGGTTGGTGGCAAGGATCTTTAC
CAACAGGTGAACAAGGTTTCTTCCCATCTAATTTCGTACAACAATTGTAAGAAAATTAAG
ATATCCTAACAATATGCTAATGGTATTTACAAATATCCAAATACTTATTATCTGAATNAT
TAAAAAAAATAAAATAAAATAAAATGTCACAATAAACTATTTCCATTT
Length of 3' end seq. 338
Connected seq. ID VSD138P
Connected seq. 
>VSD138P.Seq
ACAATATGAACAGCCAGCTGAAGAGCAATACGATCAAAGTGGTTATCTTCAAGCTAAAGC
ACTTTACGATTATAATGGTGAAAATGATGGTGATCTTTCTTTCAGAGAAGGTGATATCAT
TACAATTTTAGATCAAAGTGATCCAGATGGTTGGTGGCAAGGATCTTTACCAACAGGTGA
ACAAGGTTTCTTCCCATCTAATTTCGTACAACAATTGTAAGAAAATTAAGATATCCTAAC
AATATGCTAATGGTATTTACAAATATCCAAATACTTATTATCTGAATTGATTAAAAAAAA
TAAAATAAAATAAAATGTCACAATAAACTATTTCCATTTGTTTTCCTTAAAAAAAAAA--
--------ACAATATGAACAGCCAGCTGAAGAGCAATACGATCAAAGTGGTTATCTTCAA
GCTAAAGCACTTTACGATTATAATGGTGAAAATGATGGTGATCTTTCTTTCAGAGAAGGT
GATATCATTACAATTTTAGATCAAAGTGATCCAGATGGTTGGTGGCAAGGATCTTTACCA
ACAGGTGAACAAGGTTTCTTCCCATCTAATTTCGTACAACAATTGTAAGAAAATTAAGAT
ATCCTAACAATATGCTAATGGTATTTACAAATATCCAAATACTTATTATCTGAATNATTA
AAAAAAATAAAATAAAATAAAATGTCACAATAAACTATTTCCATTT
Length of connected seq. 696
Full length Seq ID -
Full length Seq. -
Length of full length seq. -