VSD269
Library VS
(Link to library)
Clone ID VSD269
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13793-1
Original site URL
Representative seq. ID VSD269P
(Link to Original site)
Representative DNA sequence
>VSD269 (VSD269Q) /CSM/VS/VSD2-C/VSD269Q.Seq.d/
AATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAAGAAAACACTGGAAGAGAA
AGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTATGTGTAATCCAAAAGGTG
AAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCTCCGATTTATGGCCAAAGG
TTGCCACCAATGCCGGTACCATTGTTTAAATAAATACACATAAAGTTAAAACAATATAAA
AAAAAAAXXXXXXXXXXCGCAGGTGTTGGTGATATGGTCATGGCTACCGTCAAAAAGGGT
AAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAAGAAAACACTGG
AAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTATGTGTAATCCA
AAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCTCCGATTTAGGC
CAAAGGTTGCCACCAATGCCGGTACCA
sequence update 2001. 3.22
Translated Amino Acid sequence
n*erkfalv*lsdkentgrermvftsiskitlvlcviqkvkskvtfsdqsprnapiygqr
lppmpvplfk*IHIKLKQYKKK---

---AGVGDMVMATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGE
VKGNILGPVAKECSDLGQRLPPMPVP


Translated Amino Acid sequence (All Frames)
Frame A:
n*erkfalv*lsdkentgrermvftsiskitlvlcviqkvkskvtfsdqsprnapiygqr
lppmpvplfk*IHIKLKQYKKK---

---rrcw*yghgyrqkg*trikkeslhwfscqtkktleekgwclhlfrr*rwcyv*skr*
sqr*hsrtsrqgmlrfrpkvatnagt

Frame B:
ikkeslhwfscqtkktleekgwclhlfrr*rwcyv*skr*sqr*hsrtsrqgmlrfmakg
chqcryhclnkyt*s*nnikkk---

---AGVGDMVMATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGE
VKGNILGPVAKECSDLGQRLPPMPVP

Frame C:
lrkkvctglvvrqrkhwkrkdgvyiyfednagvmcnpkgevkgnilgpvakecsdlwpkv
atnagtiv*inthkvkti*kk---

---qvlviwswlpskrvnqn*erkfalv*lsdkentgrermvftsiskitlvlcviqkvk
skvtfsdqsprnapi*akgchqcry

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ286 (VSJ286Q) /CSM/VS/VSJ2-D/VSJ286Q.Seq.d/ 496 e-139
VSJ267 (VSJ267Q) /CSM/VS/VSJ2-C/VSJ267Q.Seq.d/ 496 e-139
VSJ251 (VSJ251Q) /CSM/VS/VSJ2-C/VSJ251Q.Seq.d/ 496 e-139
VSJ211 (VSJ211Q) /CSM/VS/VSJ2-A/VSJ211Q.Seq.d/ 496 e-139
VSI870 (VSI870Q) /CSM/VS/VSI8-C/VSI870Q.Seq.d/ 496 e-139
VSI454 (VSI454Q) /CSM/VS/VSI4-C/VSI454Q.Seq.d/ 496 e-139
VSI206 (VSI206Q) /CSM/VS/VSI2-A/VSI206Q.Seq.d/ 496 e-139
VSH853 (VSH853Q) /CSM/VS/VSH8-C/VSH853Q.Seq.d/ 496 e-139
VSF856 (VSF856Q) /CSM/VS/VSF8-C/VSF856Q.Seq.d/ 496 e-139
VSF730 (VSF730Q) /CSM/VS/VSF7-B/VSF730Q.Seq.d/ 496 e-139

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CB329894|CB329894.1 SpEST1021 Sweetpotato cDNA library Ipomoea batatas cDNA 5', 3' similar to 60S ribosomal protein, mRNA sequence. 60 2e-13 2
CA520399|CA520399.1 KS11011G09 KS11 Capsicum annuum cDNA, mRNA sequence. 56 2e-11 2
BM067091|BM067091.1 KS07021F05 KS07 Capsicum annuum cDNA, mRNA sequence. 56 2e-11 2
BM066301|BM066301.1 KS07012H09 KS07 Capsicum annuum cDNA, mRNA sequence. 56 4e-11 2
CB176601|CB176601.1 PopSC00022 Poplar SC cDNA library Populus alba x Populus glandulosa cDNA clone PopSC00022, mRNA sequence. 54 9e-11 2
CA928934|CA928934.1 MTU6TR.P8.E09 Aspen root cDNA Library Populus tremuloides cDNA, mRNA sequence. 54 1e-10 2
CD821332|CD821332.1 BN25.041I11F011127 BN25 Brassica napus cDNA clone BN25041I11, mRNA sequence. 54 1e-10 2
CD830382|CD830382.1 BN40.045E20F011229 BN40 Brassica napus cDNA clone BN40045E20, mRNA sequence. 62 1e-10 2
CD822890|CD822890.1 BN25.046P08F020109 BN25 Brassica napus cDNA clone BN25046P08, mRNA sequence. 62 1e-10 2
CD812310|CD812310.1 BN10.020L21F020208 BN10 Brassica napus cDNA clone BN10020L21, mRNA sequence. 62 1e-10 2
dna update 2003. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR382130_420(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 122 7e-27
AY190730_1(AY190730|pid:none) Pagrus major ribosomal protein L17... 119 4e-26
(O42867) RecName: Full=60S ribosomal protein L23; &AL021046_14(... 119 6e-26
AE016820_83(AE016820|pid:none) Ashbya gossypii (= Eremothecium g... 119 6e-26
CR380953_148(CR380953|pid:none) Candida glabrata strain CBS138 c... 118 7e-26
AF051229_1(AF051229|pid:none) Picea mariana 60S ribosomal protei... 118 1e-25
CP000498_170(CP000498|pid:none) Pichia stipitis CBS 6054 chromos... 118 1e-25
BT070575_1(BT070575|pid:none) Picea sitchensis clone WS02737_C10... 118 1e-25
CR382135_212(CR382135|pid:none) Debaryomyces hansenii strain CBS... 118 1e-25
AC022457_14(AC022457|pid:none) Oryza sativa chromosome 10 BAC OS... 118 1e-25
protein update 2009. 7.29
PSORT

psg: 0.82 gvh: 0.27 alm: 0.58 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.36 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

80.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vesicles of secretory system
4.0 %: cytoplasmic

>> prediction for VSD269 is nuc

5' end seq. ID VSD269F
5' end seq.
>VSD269F.Seq
AATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAAGAAAACACTGGAAGAGAA
AGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTATGTGTAATCCAAAAGGTG
AAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCTCCGATTTATGGCCAAAGG
TTGCCACCAATGCCGGTACCATTGTTTAAATAAATACACATAAAGTTAAAACAATATAAA
AAAAAAA----------
Length of 5' end seq. 247
3' end seq. ID VSD269Z
3' end seq.
>VSD269Z.Seq
----------CGCAGGTGTTGGTGATATGGTCATGGCTACCGTCAAAAAGGGTAAACCAG
AATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAAGAAAACACTGGAAGAGAA
AGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTATGTGTAATCCAAAAGGTG
AAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCTCCGATTTAGGCCAAAGGT
TGCCACCAATGCCGGTACCA
Length of 3' end seq. 250
Connected seq. ID VSD269P
Connected seq.
>VSD269P.Seq
AATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAAGAAAACACTGGAAGAGAA
AGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTATGTGTAATCCAAAAGGTG
AAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCTCCGATTTATGGCCAAAGG
TTGCCACCAATGCCGGTACCATTGTTTAAATAAATACACATAAAGTTAAAACAATATAAA
AAAAAAA----------CGCAGGTGTTGGTGATATGGTCATGGCTACCGTCAAAAAGGGT
AAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAAGAAAACACTGG
AAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTATGTGTAATCCA
AAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCTCCGATTTAGGC
CAAAGGTTGCCACCAATGCCGGTACCA
Length of connected seq. 497
Full length Seq ID -
Full length Seq. -
Length of full length seq. -