VSD327
Library VS
(Link to library)
Clone ID VSD327
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11228-1
Original site URL
Representative seq. ID VSD327P
(Link to Original site)
Representative DNA sequence
>VSD327 (VSD327Q) /CSM/VS/VSD3-B/VSD327Q.Seq.d/
ACATGATATCAGAAGAGCTATATTTTATATTTTCTTTTGCTATGTAGGATTTTTTGGAGT
TGGTAATATCGCAAGTATAAGTAGTTTTGAAATTTCATCAACTTATAGATTTACAACCAT
TTTTAGACCATTTTTAATGGGTGCATTATTATTGGTAAAGATTTTCATTCCATTATTATT
GGTAGCAATTTCATTCTCTTTGTTGAATAACAATTTGAATGTTCCAAGACCTGGTAGTTT
CTTAATTGTAATTGCCTTAACCGATATAATGAGTATCAATTTCTTTTTCTTGGTTAAAGA
TACTGGTAGTTGGTTAGAAATTGGTGTTAGTATTAGCCATTATGCAATTTCAAACGCTTT
TATTATACTTCAATTATTATTATTCGCCGTTTCCGCTTTATTAGTACCAACAACATTAAA
ATATATTAATAATAATAGTAATAATAATAACAATACAATAAAATCAAAATAAATTTAAAA
CAATTAAAATAAAATATATATTAAAAAAAAAAXXXXXXXXXXACATGATATCAGAAGAGC
TATATTTTATATTTTCTTTTGCTATGTAGGATTTTTTGGAGTTGGTAATATCGCAAGTAT
AAGTAGTTTTGAAATTTCATCAACTTATAGATTTACAACCATTTTTAGACCATTTTTAAT
GGGTGCATTATTATTGGTAAAGATTTTCATTCCATTATTATTGGTAGCAATTTCATTCTC
TTTGTTGAATAACAATTTGAATGTTCCAAGACCTGGTAGTTTCTTAATTGTAATTGCCTT
AACCGATATAATGAGTATCAATTTCTTTTTCTTGGTTAAAGATACTGGTAGTTGGTTAGA
AATTGGTGTTAGTATTAGCCATTATGCAATTTCAAACGCTTTTATTATACTTCAATTATT
ATTATTCGCCGTTTCCGCTTTATTAGTACCAACAACATTAAAATATATTAATAATAATAG
TAATAATAATAACAATACAATAAAATCAAAATAAATTTAAAACAAT
sequence update 2001. 3.22
Translated Amino Acid sequence
miseelyfifsfam*dflelvisqv*vvlkfhqlidlqpfldhf*wvhyyw*rfsfhyyw
*qfhslc*iti*mfqdlvvs*l*lp*pi**vsisfswlkilvvg*klvlvlaimqfqtll
lyfnyyyspfply*yqqh*niliiiviiitiq*NQNKFKTIKIKYILKKK---

---HDIRRAIFYIFFCYVGFFGVGNIASISSFEISSTYRFTTIFRPFLMGALLLVKIFIP
LLLVAISFSLLNNNLNVPRPGSFLIVIALTDIMSINFFFLVKDTGSWLEIGVSISHYAIS
NAFIILQLLLFAVSALLVPTTLKYINNNSNNNNNTIKSK*i*nn


Translated Amino Acid sequence (All Frames)
Frame A:
t*yqksyilyflllcrifwsw*yrkyk*f*nfinl*iynhf*tifngciiigkdfhsiii
gsnfilfve*qfecsktw*flncnclnryneyqflflg*ryw*lvrnwc*y*plcnfkrf
yytsiiiirrfrfistnnikiy********qynkikinlkqlk*niy*kk---

---t*yqksyilyflllcrifwsw*yrkyk*f*nfinl*iynhf*tifngciiigkdfhs
iiigsnfilfve*qfecsktw*flncnclnryneyqflflg*ryw*lvrnwc*y*plcnf
krfyytsiiiirrfrfistnnikiy********qynkikinlkq

Frame B:
hdirraifyiffcyvgffgvgniasissfeisstyrfttifrpflmgalllvkifiplll
vaisfsllnnnlnvprpgsflivialtdimsinffflvkdtgswleigvsishyaisnaf
iilqlllfavsallvpttlkyinnnsnnnnntiksk*i*nn*nkiyikkk---

---HDIRRAIFYIFFCYVGFFGVGNIASISSFEISSTYRFTTIFRPFLMGALLLVKIFIP
LLLVAISFSLLNNNLNVPRPGSFLIVIALTDIMSINFFFLVKDTGSWLEIGVSISHYAIS
NAFIILQLLLFAVSALLVPTTLKYINNNSNNNNNTIKSK*i*nn

Frame C:
miseelyfifsfam*dflelvisqv*vvlkfhqlidlqpfldhf*wvhyyw*rfsfhyyw
*qfhslc*iti*mfqdlvvs*l*lp*pi**vsisfswlkilvvg*klvlvlaimqfqtll
lyfnyyyspfply*yqqh*niliiiviiitiq*NQNKFKTIKIKYILKKK---

---miseelyfifsfam*dflelvisqv*vvlkfhqlidlqpfldhf*wvhyyw*rfsfh
yyw*qfhslc*iti*mfqdlvvs*l*lp*pi**vsisfswlkilvvg*klvlvlaimqfq
tlllyfnyyyspfply*yqqh*niliiiviiitiq*nqnkfkt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSD327 (VSD327Q) /CSM/VS/VSD3-B/VSD327Q.Seq.d/ 825 0.0
SHL677 (SHL677Q) /CSM/SH/SHL6-D/SHL677Q.Seq.d/ 825 0.0
CHR468 (CHR468Q) /CSM/CH/CHR4-C/CHR468Q.Seq.d/ 825 0.0
CHF316 (CHF316Q) /CSM/CH/CHF3-A/CHF316Q.Seq.d/ 825 0.0
CFH470 (CFH470Q) /CSM/CF/CFH4-C/CFH470Q.Seq.d/ 825 0.0
AHI564 (AHI564Q) /CSM/AH/AHI5-C/AHI564Q.Seq.d/ 825 0.0
AHC385 (AHC385Q) /CSM/AH/AHC3-D/AHC385Q.Seq.d/ 825 0.0
CHJ630 (CHJ630Q) /CSM/CH/CHJ6-B/CHJ630Q.Seq.d/ 817 0.0
AHK229 (AHK229Q) /CSM/AH/AHK2-B/AHK229Q.Seq.d/ 811 0.0
CHF356 (CHF356Q) /CSM/CH/CHF3-C/CHF356Q.Seq.d/ 809 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC130225|AC130225.4 Rattus norvegicus clone CH230-45D20, WORKING DRAFT SEQUENCE, 3 unordered pieces. 42 0.004 5
AL354994|AL354994.8 Human DNA sequence from clone RP11-30L8 on chromosome 13. 38 0.007 4
AC106362|AC106362.4 Rattus norvegicus clone CH230-119P18, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 42 0.036 4
AC117961|AC117961.5 Rattus norvegicus clone CH230-272K17, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces. 46 0.042 4
AC101648|AC101648.1 Mus musculus clone RP23-200H10, LOW-PASS SEQUENCE SAMPLING. 40 0.067 3
AC106655|AC106655.4 Rattus norvegicus clone CH230-67O14, WORKING DRAFT SEQUENCE, 8 unordered pieces. 34 0.19 6
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 32 0.21 12
AZ180136|AZ180136.1 SP_0167_B1_C03_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=167 Col=5 Row=F, DNA sequence. 48 0.21 1
AF409138|AF409138.1 Lumpy skin disease virus isolate Neethling vaccine LW 1959, complete genome. 36 0.26 6
AC118097|AC118097.6 Rattus norvegicus clone CH230-185H22, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 38 0.28 4
dna update 2003. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EU234001_1(EU234001|pid:none) Mus musculus clone CRL2196L1ASC02 ... 118 3e-25
AK132928_1(AK132928|pid:none) Mus musculus adult male testis cDN... 118 3e-25
AB030279_1(AB030279|pid:none) Mus musculus Pig-n mRNA for phosph... 118 3e-25
AP008208_1663(AP008208|pid:none) Oryza sativa (japonica cultivar... 116 1e-24
AK315134_1(AK315134|pid:none) Homo sapiens cDNA, FLJ96099, highl... 114 4e-24
(Q6C0Z3) RecName: Full=GPI ethanolamine phosphate transferase 1;... 110 6e-23
(Q2U0S9) RecName: Full=GPI ethanolamine phosphate transferase 1;... 108 2e-22
CP000584_115(CP000584|pid:none) Ostreococcus lucimarinus CCE9901... 105 2e-21
(Q8WZK2) RecName: Full=GPI ethanolamine phosphate transferase 1;... 103 7e-21
CP001575_229(CP001575|pid:none) Micromonas sp. RCC299 chromosome... 101 5e-20
protein update 2009. 7.29
PSORT

psg: 0.41 gvh: 0.44 alm: 0.17 top: 0.17 tms: 0.27 mit: 0.26 mip: 0.16
nuc: 0.02 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
32.0 %: plasma membrane
12.0 %: mitochondrial
8.0 %: nuclear
4.0 %: vesicles of secretory system
4.0 %: Golgi
4.0 %: peroxisomal

>> prediction for VSD327 is end

5' end seq. ID VSD327F
5' end seq.
>VSD327F.Seq
ACATGATATCAGAAGAGCTATATTTTATATTTTCTTTTGCTATGTAGGATTTTTTGGAGT
TGGTAATATCGCAAGTATAAGTAGTTTTGAAATTTCATCAACTTATAGATTTACAACCAT
TTTTAGACCATTTTTAATGGGTGCATTATTATTGGTAAAGATTTTCATTCCATTATTATT
GGTAGCAATTTCATTCTCTTTGTTGAATAACAATTTGAATGTTCCAAGACCTGGTAGTTT
CTTAATTGTAATTGCCTTAACCGATATAATGAGTATCAATTTCTTTTTCTTGGTTAAAGA
TACTGGTAGTTGGTTAGAAATTGGTGTTAGTATTAGCCATTATGCAATTTCAAACGCTTT
TATTATACTTCAATTATTATTATTCGCCGTTTCCGCTTTATTAGTACCAACAACATTAAA
ATATATTAATAATAATAGTAATAATAATAACAATACAATAAAATCAAAATAAATTTAAAA
CAATTAAAATAAAATATATATTAAAAAAAAAA----------
Length of 5' end seq. 512
3' end seq. ID VSD327Z
3' end seq.
>VSD327Z.Seq
----------ACATGATATCAGAAGAGCTATATTTTATATTTTCTTTTGCTATGTAGGAT
TTTTTGGAGTTGGTAATATCGCAAGTATAAGTAGTTTTGAAATTTCATCAACTTATAGAT
TTACAACCATTTTTAGACCATTTTTAATGGGTGCATTATTATTGGTAAAGATTTTCATTC
CATTATTATTGGTAGCAATTTCATTCTCTTTGTTGAATAACAATTTGAATGTTCCAAGAC
CTGGTAGTTTCTTAATTGTAATTGCCTTAACCGATATAATGAGTATCAATTTCTTTTTCT
TGGTTAAAGATACTGGTAGTTGGTTAGAAATTGGTGTTAGTATTAGCCATTATGCAATTT
CAAACGCTTTTATTATACTTCAATTATTATTATTCGCCGTTTCCGCTTTATTAGTACCAA
CAACATTAAAATATATTAATAATAATAGTAATAATAATAACAATACAATAAAATCAAAAT
AAATTTAAAACAAT
Length of 3' end seq. 484
Connected seq. ID VSD327P
Connected seq.
>VSD327P.Seq
ACATGATATCAGAAGAGCTATATTTTATATTTTCTTTTGCTATGTAGGATTTTTTGGAGT
TGGTAATATCGCAAGTATAAGTAGTTTTGAAATTTCATCAACTTATAGATTTACAACCAT
TTTTAGACCATTTTTAATGGGTGCATTATTATTGGTAAAGATTTTCATTCCATTATTATT
GGTAGCAATTTCATTCTCTTTGTTGAATAACAATTTGAATGTTCCAAGACCTGGTAGTTT
CTTAATTGTAATTGCCTTAACCGATATAATGAGTATCAATTTCTTTTTCTTGGTTAAAGA
TACTGGTAGTTGGTTAGAAATTGGTGTTAGTATTAGCCATTATGCAATTTCAAACGCTTT
TATTATACTTCAATTATTATTATTCGCCGTTTCCGCTTTATTAGTACCAACAACATTAAA
ATATATTAATAATAATAGTAATAATAATAACAATACAATAAAATCAAAATAAATTTAAAA
CAATTAAAATAAAATATATATTAAAAAAAAAA----------ACATGATATCAGAAGAGC
TATATTTTATATTTTCTTTTGCTATGTAGGATTTTTTGGAGTTGGTAATATCGCAAGTAT
AAGTAGTTTTGAAATTTCATCAACTTATAGATTTACAACCATTTTTAGACCATTTTTAAT
GGGTGCATTATTATTGGTAAAGATTTTCATTCCATTATTATTGGTAGCAATTTCATTCTC
TTTGTTGAATAACAATTTGAATGTTCCAAGACCTGGTAGTTTCTTAATTGTAATTGCCTT
AACCGATATAATGAGTATCAATTTCTTTTTCTTGGTTAAAGATACTGGTAGTTGGTTAGA
AATTGGTGTTAGTATTAGCCATTATGCAATTTCAAACGCTTTTATTATACTTCAATTATT
ATTATTCGCCGTTTCCGCTTTATTAGTACCAACAACATTAAAATATATTAATAATAATAG
TAATAATAATAACAATACAATAAAATCAAAATAAATTTAAAACAAT
Length of connected seq. 996
Full length Seq ID -
Full length Seq. -
Length of full length seq. -