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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD339
Library VS
(Link to library)
Clone ID VSD339
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15746-1
Original site URL
Representative seq. ID VSD339P
(Link to Original site)
Representative DNA sequence 
>VSD339 (VSD339Q) /CSM/VS/VSD3-B/VSD339Q.Seq.d/
GCTTTGGCTTTGAATGATGAAGAATTCGATAGACATATGTGTGTCAAGGATAATGTAGTA
CCAGAGTTTTATGAAAATTACATTAAAGACGTTCATCATACCATTGAATCAAATGCTCGT
TTAGAGTTTGAATGTATTTGGAGTGAACATGAATCAACTAAAACTCCACGTTCAATCCTT
TCCGATCTCTTATCAAATAAAATCAATTCACTCAATGATTCAATTCAAACCTCTTCCCTT
TGGACTGATCAATCACTCAGACGTAAAATCATCTCTGCTGCTTGTCCAAAGGTTTTATTA
AATCTTTTAGGTGTTGATAAAATTATGGAACGTGTACCAGAACCATACGTTAAAGCTATC
TTTGGTTCTTATTTAGCAAGTCGTTTCGTTTATAAATATGGTCTCAATAGTAATGAATTT
GCTTTCTATACTTATATGGAAACTTTAAAACAACAATAATAATAATAAAAAAAATAATAA
TAAAAAAATAAAATAAAATAAAATAAAATAAAATAAATAATAATAATAAAAAAAAAAXXX
XXXXXXXGCTTTGGCTTTGAATGATGAAGAATTCGATAGACATATGTGTGTCAAGGATAA
TGTAGTACCAGAGTTTTATGAAAATTACATTAAAGACGTTCATCATACCATTGAATCAAA
TGCTCGTTTAGAGTTTGAATGTATTTGGAGTGAACATGAATCAACTAAAACTCCACGTTC
AATCCTTTCCGATCTCTTATCAAATAAAATCAATTCACTCAATGATTCAATTCAAACCTC
TTCCCTTTGGACTGATCAATCACTCAGACGTAAAATCATCTCTGCTGCTTGTCCAAAGGT
TTTATTAAATCTTTTAGGTGTTGATAAAATTATGGAACGTGTACCAGAACCATACGTTAA
AGCTATCTTTGGTTCTTATTTAGCAAGTCGTTTCGTTTATAAATATGGTCTCAATAGTAA
TGAATTTGCTTTCTATACTTATATGGAAACTTTAAAACAACAATAATAATAATAAAAAAA
ATAATAATAAAAAAATAAAATAAAATAAAATAAAATAAAATAAATAATAA
sequence update 2001. 3.22
Translated Amino Acid sequence 
fgfe**rir*tyvcqg*cstrvl*klh*rrssyh*ikcsfrv*myle*t*in*nstfnpf
rslik*nqftq*fnsnlfpld*sitqt*nhlcclskgfiksfrc**nygtctrtir*syl
wflfsksfrl*iwsq***icflylygnfkttiiiikkiiikk*nkik*NKINNNNKKK--
-

---ALALNDEEFDRHMCVKDNVVPEFYENYIKDVHHTIESNARLEFECIWSEHESTKTPR
SILSDLLSNKINSLNDSIQTSSLWTDQSLRRKIISAACPKVLLNLLGVDKIMERVPEPYV
KAIFGSYLASRFVYKYGLNSNEFAFYTYMETLKQQ****kk***knkik*nkik*ii
Translated Amino Acid sequence (All Frames) 
Frame A:
alalndeefdrhmcvkdnvvpefyenyikdvhhtiesnarlefeciwsehestktprsil
sdllsnkinslndsiqtsslwtdqslrrkiisaacpkvllnllgvdkimervpepyvkai
fgsylasrfvykyglnsnefafytymetlkqq****kk***knkik*nkik*iiiikkk-
--

---ALALNDEEFDRHMCVKDNVVPEFYENYIKDVHHTIESNARLEFECIWSEHESTKTPR
SILSDLLSNKINSLNDSIQTSSLWTDQSLRRKIISAACPKVLLNLLGVDKIMERVPEPYV
KAIFGSYLASRFVYKYGLNSNEFAFYTYMETLKQQ****kk***knkik*nkik*ii

Frame B:
lwl*mmknsidicvsrim*yqsfmkitlktfiiplnqmlv*slnvfgvnmnqlklhvqsf
pisyqiksihsmiqfkplpfglinhsdvksslllvqrfy*if*vliklwnvyqnhtlkls
lvli*qvvsfinmvsivmnllsiliwkl*nnnnnnkknnnkkik*nkik*nk****kk--
-

---lwl*mmknsidicvsrim*yqsfmkitlktfiiplnqmlv*slnvfgvnmnqlklhv
qsfpisyqiksihsmiqfkplpfglinhsdvksslllvqrfy*if*vliklwnvyqnhtl
klslvli*qvvsfinmvsivmnllsiliwkl*nnnnnnkknnnkkik*nkik*nk**

Frame C:
fgfe**rir*tyvcqg*cstrvl*klh*rrssyh*ikcsfrv*myle*t*in*nstfnpf
rslik*nqftq*fnsnlfpld*sitqt*nhlcclskgfiksfrc**nygtctrtir*syl
wflfsksfrl*iwsq***icflylygnfkttiiiikkiiikk*nkik*NKINNNNKKK--
-

---fgfe**rir*tyvcqg*cstrvl*klh*rrssyh*ikcsfrv*myle*t*in*nstf
npfrslik*nqftq*fnsnlfpld*sitqt*nhlcclskgfiksfrc**nygtctrtir*
sylwflfsksfrl*iwsq***icflylygnfkttiiiikkiiikk*nkik*nkinn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD339 (VSD339Q) /CSM/VS/VSD3-B/VSD339Q.Seq.d/                        900   0.0
VHG821 (VHG821Q) /CSM/VH/VHG8-A/VHG821Q.Seq.d/                        900   0.0
SHD412 (SHD412Q) /CSM/SH/SHD4-A/SHD412Q.Seq.d/                        900   0.0
SHA610 (SHA610Q) /CSM/SH/SHA6-A/SHA610Q.Seq.d/                        900   0.0
CHN253 (CHN253Q) /CSM/CH/CHN2-C/CHN253Q.Seq.d/                        900   0.0
CHI677 (CHI677Q) /CSM/CH/CHI6-D/CHI677Q.Seq.d/                        900   0.0
CHI239 (CHI239Q) /CSM/CH/CHI2-B/CHI239Q.Seq.d/                        900   0.0
AHF621 (AHF621Q) /CSM/AH/AHF6-A/AHF621Q.Seq.d/                        900   0.0
AHF162 (AHF162Q) /CSM/AH/AHF1-C/AHF162Q.Seq.d/                        900   0.0
AHD336 (AHD336Q) /CSM/AH/AHD3-B/AHD336Q.Seq.d/                        900   0.0
own update 2003. 1. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC106993|AC106993.5 Rattus norvegicus clone CH230-155F24, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    38  0.005  5
AC094572|AC094572.6 Rattus norvegicus clone CH230-4L24, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    36  0.014  5
AC112264|AC112264.4 Mus musculus chromosome UNK clone RP23-421E18, WORKING DRAFT SEQUENCE, 8 unordered pieces.    36  0.036  5
AC124208|AC124208.4 Rattus norvegicus clone CH230-307P20, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    38  0.038  3
AC118303|AC118303.7 Rattus norvegicus clone CH230-173H17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  0.053  3
AC096461|AC096461.5 Rattus norvegicus clone CH230-58J17, WORKING DRAFT SEQUENCE, 6 unordered pieces.    38  0.056  3
AC109556|AC109556.4 Rattus norvegicus clone CH230-330N7, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    36  0.061  4
AC094219|AC094219.5 Rattus norvegicus clone CH230-2P12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  0.069  5
AC128873|AC128873.3 Rattus norvegicus clone CH230-502N13, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36  0.070  4
AC141035|AC141035.1 Rattus norvegicus clone CH230-470E22, *** SEQUENCING IN PROGRESS ***, 36 unordered pieces.    36  0.071  3
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP007154_641(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...   164   6e-39
CU633900_481(CU633900|pid:none) Podospora anserina genomic DNA c...   158   4e-37
AM270040_65(AM270040|pid:none) Aspergillus niger contig An02c046...   157   6e-37
AY223544_1(AY223544|pid:none) Emericella nidulans NAD dependent ...   155   2e-36
AJ310444_1(AJ310444|pid:none) Gibberella fujikuroi gdh1 gene for...   149   1e-34
DENCED(A92284;A92215;A32204;A00378)glutamate dehydrogenase (EC 1...   149   1e-34
CR940353_806(CR940353|pid:none) Theileria annulata strain Ankara...   128   3e-28
FN392320_326(FN392320|pid:none) Pichia pastoris GS115 chromosome...   119   2e-25
FM992689_715(FM992689|pid:none) Candida dubliniensis CD36 chromo...   118   4e-25
CT005254_103(CT005254|pid:none) Leishmania major strain Friedlin...   113   1e-23
protein update 2009. 7.29
PSORT 

 psg: 0.53  gvh: 0.21  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VSD339 is cyt
5' end seq. ID VSD339F
5' end seq. 
>VSD339F.Seq
GCTTTGGCTTTGAATGATGAAGAATTCGATAGACATATGTGTGTCAAGGATAATGTAGTA
CCAGAGTTTTATGAAAATTACATTAAAGACGTTCATCATACCATTGAATCAAATGCTCGT
TTAGAGTTTGAATGTATTTGGAGTGAACATGAATCAACTAAAACTCCACGTTCAATCCTT
TCCGATCTCTTATCAAATAAAATCAATTCACTCAATGATTCAATTCAAACCTCTTCCCTT
TGGACTGATCAATCACTCAGACGTAAAATCATCTCTGCTGCTTGTCCAAAGGTTTTATTA
AATCTTTTAGGTGTTGATAAAATTATGGAACGTGTACCAGAACCATACGTTAAAGCTATC
TTTGGTTCTTATTTAGCAAGTCGTTTCGTTTATAAATATGGTCTCAATAGTAATGAATTT
GCTTTCTATACTTATATGGAAACTTTAAAACAACAATAATAATAATAAAAAAAATAATAA
TAAAAAAATAAAATAAAATAAAATAAAATAAAATAAATAATAATAATAAAAAAAAAA---
-------
Length of 5' end seq. 537
3' end seq. ID VSD339Z
3' end seq. 
>VSD339Z.Seq
----------GCTTTGGCTTTGAATGATGAAGAATTCGATAGACATATGTGTGTCAAGGA
TAATGTAGTACCAGAGTTTTATGAAAATTACATTAAAGACGTTCATCATACCATTGAATC
AAATGCTCGTTTAGAGTTTGAATGTATTTGGAGTGAACATGAATCAACTAAAACTCCACG
TTCAATCCTTTCCGATCTCTTATCAAATAAAATCAATTCACTCAATGATTCAATTCAAAC
CTCTTCCCTTTGGACTGATCAATCACTCAGACGTAAAATCATCTCTGCTGCTTGTCCAAA
GGTTTTATTAAATCTTTTAGGTGTTGATAAAATTATGGAACGTGTACCAGAACCATACGT
TAAAGCTATCTTTGGTTCTTATTTAGCAAGTCGTTTCGTTTATAAATATGGTCTCAATAG
TAATGAATTTGCTTTCTATACTTATATGGAAACTTTAAAACAACAATAATAATAATAAAA
AAAATAATAATAAAAAAATAAAATAAAATAAAATAAAATAAAATAAATAATAA
Length of 3' end seq. 523
Connected seq. ID VSD339P
Connected seq. 
>VSD339P.Seq
GCTTTGGCTTTGAATGATGAAGAATTCGATAGACATATGTGTGTCAAGGATAATGTAGTA
CCAGAGTTTTATGAAAATTACATTAAAGACGTTCATCATACCATTGAATCAAATGCTCGT
TTAGAGTTTGAATGTATTTGGAGTGAACATGAATCAACTAAAACTCCACGTTCAATCCTT
TCCGATCTCTTATCAAATAAAATCAATTCACTCAATGATTCAATTCAAACCTCTTCCCTT
TGGACTGATCAATCACTCAGACGTAAAATCATCTCTGCTGCTTGTCCAAAGGTTTTATTA
AATCTTTTAGGTGTTGATAAAATTATGGAACGTGTACCAGAACCATACGTTAAAGCTATC
TTTGGTTCTTATTTAGCAAGTCGTTTCGTTTATAAATATGGTCTCAATAGTAATGAATTT
GCTTTCTATACTTATATGGAAACTTTAAAACAACAATAATAATAATAAAAAAAATAATAA
TAAAAAAATAAAATAAAATAAAATAAAATAAAATAAATAATAATAATAAAAAAAAAA---
-------GCTTTGGCTTTGAATGATGAAGAATTCGATAGACATATGTGTGTCAAGGATAA
TGTAGTACCAGAGTTTTATGAAAATTACATTAAAGACGTTCATCATACCATTGAATCAAA
TGCTCGTTTAGAGTTTGAATGTATTTGGAGTGAACATGAATCAACTAAAACTCCACGTTC
AATCCTTTCCGATCTCTTATCAAATAAAATCAATTCACTCAATGATTCAATTCAAACCTC
TTCCCTTTGGACTGATCAATCACTCAGACGTAAAATCATCTCTGCTGCTTGTCCAAAGGT
TTTATTAAATCTTTTAGGTGTTGATAAAATTATGGAACGTGTACCAGAACCATACGTTAA
AGCTATCTTTGGTTCTTATTTAGCAAGTCGTTTCGTTTATAAATATGGTCTCAATAGTAA
TGAATTTGCTTTCTATACTTATATGGAAACTTTAAAACAACAATAATAATAATAAAAAAA
ATAATAATAAAAAAATAAAATAAAATAAAATAAAATAAAATAAATAATAA
Length of connected seq. 1060
Full length Seq ID -
Full length Seq. -
Length of full length seq. -