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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD342
Library VS
(Link to library)
Clone ID VSD342
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14693-1
Original site URL
Representative seq. ID VSD342P
(Link to Original site)
Representative DNA sequence 
>VSD342 (VSD342Q) /CSM/VS/VSD3-B/VSD342Q.Seq.d/
CACCAAATGAGTAATATTTCAAAAGTATCATATCTTTTAGGCAAATTTAAAGGTTCTGGT
AAGGGTGAATATCCAACCATTACACCATTCACATATACAGAAGAGATTGAATTCTCAAAC
AATGGTAAACCATTTATTTTTTATCAACAAAAAACATGGAATGTAAATGGTCAACCTTTA
CACTCAGAGAGTGGATATATGAGATTTCCACCAAATGGAAAGGTTGAATTGGTAATTTCA
GAACCAACTGGTATCAATGAGATATATGATGGAGAAATTACAGGTGAAAATAATGAAATC
CTTACATTTAAATTAACAAATATTCAAAGAACACCAACTGCTAAACCACCACATACTACA
AATGTTATTAGAAAATTTACATTTGATCAAAGTGCCAACACTCTTTCATATACAATGGAT
ATGGCCACTACAACAACCACTGATTTAACTCATCATTTAAGTGCAACTTTACAAAAACAA
TTATAATAAAAACAAAATTTCAAATACCATTGTAAAATAAAAAAAAAAXXXXXXXXXXCA
CCAAATGAGTAATATTTCAAAAGTATCATATCTTTTAGGCAAATTTAAAGGTTCTGGTAA
GGGTGAATATCCAACCATTACACCATTCACATATACAGAAGAGATTGAATTCTCAAACAA
TGGTAAACCATTTATTTTTTATCAACAAAAAACATGGAATGTAAATGGTCAACCTTTACA
CTCAGAGAGTGGATATATGAGATTTCCACCAAATGGAAAGGTTGAATTGGTAATTTCAGA
ACCAACTGGTATCAATGAGATATATGATGGAGAAATTACAGGTGAAAATAATGAAATCCT
TACATTTAAATTAACAAATATTCAAAGAACACCAACTGCTAAACCACCACATACTACAAA
TGTTATTAGAAAATTTACATTTGATCAAAGTGCCAACACTCTTTCATATACAATGGATAT
GGCCACTACAACAACCACTGATTTAACTCATCATTTAAGTGCAACTTTACAAAAACAATT
ATAATAAAAACAAAATTTCAAATACCAT
sequence update 2001. 3.22
Translated Amino Acid sequence 
hqmsniskvsyllgkfkgsgkgeyptitpftyteeiefsnngkpfifyqqktwnvngqpl
hsesgymrfppngkvelviseptgineiydgeitgenneiltfkltniqrtptakpphtt
nvirkftfdqsantlsytmdmatttttdlthhlsatlqkql**KQNFKYHCKIKKK---

---HQMSNISKVSYLLGKFKGSGKGEYPTITPFTYTEEIEFSNNGKPFIFYQQKTWNVNG
QPLHSESGYMRFPPNGKVELVISEPTGINEIYDGEITGENNEILTFKLTNIQRTPTAKPP
HTTNVIRKFTFDQSANTLSYTMDMATTTTTDLTHHLSATLQKQL**kqnfkyh
Translated Amino Acid sequence (All Frames) 
Frame A:
hqmsniskvsyllgkfkgsgkgeyptitpftyteeiefsnngkpfifyqqktwnvngqpl
hsesgymrfppngkvelviseptgineiydgeitgenneiltfkltniqrtptakpphtt
nvirkftfdqsantlsytmdmatttttdlthhlsatlqkql**KQNFKYHCKIKKK---

---HQMSNISKVSYLLGKFKGSGKGEYPTITPFTYTEEIEFSNNGKPFIFYQQKTWNVNG
QPLHSESGYMRFPPNGKVELVISEPTGINEIYDGEITGENNEILTFKLTNIQRTPTAKPP
HTTNVIRKFTFDQSANTLSYTMDMATTTTTDLTHHLSATLQKQL**kqnfkyh

Frame B:
tk*vifqkyhif*anlkvlvrvniqplhhshiqkrlnsqtmvnhlffinkkhgm*mvnly
tqrvdi*dfhqmerlnw*fqnqlvsmrymmeklqvkimkslhln*qifkehqllnhhilq
mllenlhlikvptlfhiqwiwplqqpli*lii*vqlyknnynknkisntivk*kk---

---tk*vifqkyhif*anlkvlvrvniqplhhshiqkrlnsqtmvnhlffinkkhgm*mv
nlytqrvdi*dfhqmerlnw*fqnqlvsmrymmeklqvkimkslhln*qifkehqllnhh
ilqmllenlhlikvptlfhiqwiwplqqpli*lii*vqlyknnynknkisnt

Frame C:
pne*yfksiisfrqi*rfw*g*isnhytihiyrrd*ilkqw*tiyflstknmeckwstft
lrewiyeistkwkg*ignfrtnwyq*di*wrnyr*k**npyi*inkyskntnc*tttyyk
cy*kiyi*skcqhsfiyngyghynnh*fnssfkcnftktiiiktkfqipl*nkkk---

---pne*yfksiisfrqi*rfw*g*isnhytihiyrrd*ilkqw*tiyflstknmeckws
tftlrewiyeistkwkg*ignfrtnwyq*di*wrnyr*k**npyi*inkyskntnc*ttt
yykcy*kiyi*skcqhsfiyngyghynnh*fnssfkcnftktiiiktkfqip
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD342 (VSD342Q) /CSM/VS/VSD3-B/VSD342Q.Seq.d/                       1027   0.0
VSH414 (VSH414Q) /CSM/VS/VSH4-A/VSH414Q.Seq.d/                       1009   0.0
VSB228 (VSB228Q) /CSM/VS/VSB2-B/VSB228Q.Seq.d/                        997   0.0
SLJ595 (SLJ595Q) /CSM/SL/SLJ5-D/SLJ595Q.Seq.d/                        535   e-151
VSD105 (VSD105Q) /CSM/VS/VSD1-A/VSD105Q.Seq.d/                        391   e-107
VSA109 (VSA109Q) /CSM/VS/VSA1-A/VSA109Q.Seq.d/                        178   1e-43
SSM395 (SSM395Q) /CSM/SS/SSM3-D/SSM395Q.Seq.d/                         46   0.001
SSA381 (SSA381Q) /CSM/SS/SSA3-D/SSA381Q.Seq.d/                         46   0.001
SSM206 (SSM206Q) /CSM/SS/SSM2-A/SSM206Q.Seq.d/                         40   0.067
VSC174 (VSC174Q) /CSM/VS/VSC1-D/VSC174Q.Seq.d/                         38   0.26
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   737  0.0  8
X52688|X52688.1 D.discoideum CABP1 gene for CABP1 cAMP binding protein.   218  1e-52  1
AX348791|AX348791.1 Sequence 249 from Patent WO0202807.           38  2e-05  4
AX252024|AX252024.1 Sequence 285 from Patent WO0168911.           38  2e-05  4
AX344555|AX344555.1 Sequence 6 from Patent WO0200932.             38  5e-05  10
AX356395|AX356395.1 Sequence 29 from Patent WO0181622.            38  5e-05  4
AX281158|AX281158.1 Sequence 23 from Patent WO0177377.            38  5e-05  4
AX344562|AX344562.1 Sequence 13 from Patent WO0200932.            40  1e-04  7
AX348898|AX348898.1 Sequence 356 from Patent WO0202807.           36  4e-04  7
AX252161|AX252161.1 Sequence 422 from Patent WO0168911.           36  4e-04  7
dna update 2003. 8.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_34(AC116984|pid:none) Dictyostelium discoideum chromoso...   274   4e-72
(B2HLY1) RecName: Full=UPF0678 fatty acid-binding protein-like p...   103   1e-20
(O64527) RecName: Full=UPF0678 fatty acid-binding protein-like p...   102   3e-20
(A3PTJ4) RecName: Full=UPF0678 fatty acid-binding protein-like p...   102   3e-20
AP011115_5715(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp...   100   1e-19
AM454000_3(AM454000|pid:none) Vitis vinifera contig VV78X082437....   100   1e-19
(A0R6J8) RecName: Full=UPF0678 fatty acid-binding protein-like p...   100   1e-19
(Q73W27) RecName: Full=UPF0678 fatty acid-binding protein-like p...   100   1e-19
(A1T297) RecName: Full=UPF0678 fatty acid-binding protein-like p...    97   1e-18
AP008207_2135(AP008207|pid:none) Oryza sativa (japonica cultivar...    96   2e-18
protein update 2009. 7.29
PSORT 

 psg: 0.52  gvh: 0.31  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal

>> prediction for VSD342 is cyt
5' end seq. ID VSD342F
5' end seq. 
>VSD342F.Seq
CACCAAATGAGTAATATTTCAAAAGTATCATATCTTTTAGGCAAATTTAAAGGTTCTGGT
AAGGGTGAATATCCAACCATTACACCATTCACATATACAGAAGAGATTGAATTCTCAAAC
AATGGTAAACCATTTATTTTTTATCAACAAAAAACATGGAATGTAAATGGTCAACCTTTA
CACTCAGAGAGTGGATATATGAGATTTCCACCAAATGGAAAGGTTGAATTGGTAATTTCA
GAACCAACTGGTATCAATGAGATATATGATGGAGAAATTACAGGTGAAAATAATGAAATC
CTTACATTTAAATTAACAAATATTCAAAGAACACCAACTGCTAAACCACCACATACTACA
AATGTTATTAGAAAATTTACATTTGATCAAAGTGCCAACACTCTTTCATATACAATGGAT
ATGGCCACTACAACAACCACTGATTTAACTCATCATTTAAGTGCAACTTTACAAAAACAA
TTATAATAAAAACAAAATTTCAAATACCATTGTAAAATAAAAAAAAAA----------
Length of 5' end seq. 528
3' end seq. ID VSD342Z
3' end seq. 
>VSD342Z.Seq
----------CACCAAATGAGTAATATTTCAAAAGTATCATATCTTTTAGGCAAATTTAA
AGGTTCTGGTAAGGGTGAATATCCAACCATTACACCATTCACATATACAGAAGAGATTGA
ATTCTCAAACAATGGTAAACCATTTATTTTTTATCAACAAAAAACATGGAATGTAAATGG
TCAACCTTTACACTCAGAGAGTGGATATATGAGATTTCCACCAAATGGAAAGGTTGAATT
GGTAATTTCAGAACCAACTGGTATCAATGAGATATATGATGGAGAAATTACAGGTGAAAA
TAATGAAATCCTTACATTTAAATTAACAAATATTCAAAGAACACCAACTGCTAAACCACC
ACATACTACAAATGTTATTAGAAAATTTACATTTGATCAAAGTGCCAACACTCTTTCATA
TACAATGGATATGGCCACTACAACAACCACTGATTTAACTCATCATTTAAGTGCAACTTT
ACAAAAACAATTATAATAAAAACAAAATTTCAAATACCAT
Length of 3' end seq. 510
Connected seq. ID VSD342P
Connected seq. 
>VSD342P.Seq
CACCAAATGAGTAATATTTCAAAAGTATCATATCTTTTAGGCAAATTTAAAGGTTCTGGT
AAGGGTGAATATCCAACCATTACACCATTCACATATACAGAAGAGATTGAATTCTCAAAC
AATGGTAAACCATTTATTTTTTATCAACAAAAAACATGGAATGTAAATGGTCAACCTTTA
CACTCAGAGAGTGGATATATGAGATTTCCACCAAATGGAAAGGTTGAATTGGTAATTTCA
GAACCAACTGGTATCAATGAGATATATGATGGAGAAATTACAGGTGAAAATAATGAAATC
CTTACATTTAAATTAACAAATATTCAAAGAACACCAACTGCTAAACCACCACATACTACA
AATGTTATTAGAAAATTTACATTTGATCAAAGTGCCAACACTCTTTCATATACAATGGAT
ATGGCCACTACAACAACCACTGATTTAACTCATCATTTAAGTGCAACTTTACAAAAACAA
TTATAATAAAAACAAAATTTCAAATACCATTGTAAAATAAAAAAAAAA----------CA
CCAAATGAGTAATATTTCAAAAGTATCATATCTTTTAGGCAAATTTAAAGGTTCTGGTAA
GGGTGAATATCCAACCATTACACCATTCACATATACAGAAGAGATTGAATTCTCAAACAA
TGGTAAACCATTTATTTTTTATCAACAAAAAACATGGAATGTAAATGGTCAACCTTTACA
CTCAGAGAGTGGATATATGAGATTTCCACCAAATGGAAAGGTTGAATTGGTAATTTCAGA
ACCAACTGGTATCAATGAGATATATGATGGAGAAATTACAGGTGAAAATAATGAAATCCT
TACATTTAAATTAACAAATATTCAAAGAACACCAACTGCTAAACCACCACATACTACAAA
TGTTATTAGAAAATTTACATTTGATCAAAGTGCCAACACTCTTTCATATACAATGGATAT
GGCCACTACAACAACCACTGATTTAACTCATCATTTAAGTGCAACTTTACAAAAACAATT
ATAATAAAAACAAAATTTCAAATACCAT
Length of connected seq. 1038
Full length Seq ID -
Full length Seq. -
Length of full length seq. -