VSD390
Library VS
(Link to library)
Clone ID VSD390
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15450-1
Original site URL
Representative seq. ID VSD390P
(Link to Original site)
Representative DNA sequence
>VSD390 (VSD390Q) /CSM/VS/VSD3-D/VSD390Q.Seq.d/
CGCGTCCGCGCAGCTGCTTCATTAGATTTAGTTCAAATTAACCCACAAAACGGTACTGTC
GGTGGAACATTCACCCTCTCAATTGCTTACACTGTTACCAACACCATCGCCACTGGTCAA
TTAGCTTTCAATATCATCGATCCAACCGGTAATGCTTTTGGTGATGCCGTTTTATTAGTT
CAACAATCACCAGAACAATACACCCAACAATTCCAATTCCAAGCTACCCCATCAGAACAA
GAATCATTCCCAAATGGTTTATACACTGTCCAAGCTCTCGTTTGTGAAGGTTCATGTGGT
TCACCACATCCAAACACTTACACTCTTGCCAACGGTACCACCACTTTCACCATCTCTGGT
GCTGATTCTTCATCAATGTCTGGTGCTGGTTCTTTCTCTGGTTCTTCCCAATCAACCCAA
ACTGGTGCCGCCTCTGGTTCAGGTTCAGGTTTTGCTTTATTTTAAAAAAATACTTATTAA
AATAAATATTTAATTTTATAATTTTTTATTTAATXXXXXXXXXXCGCAGCTGCTTCATTA
GATTTAGTTCAAATTAACCCACAAAACGGTACTGTCGGTGGAACATTCACCCTCTCAATT
GCTTACACTGTTACCAACACCATCGCCACTGGTCAATTAGCTTTCAATATCATCGATCCA
ACCGGTAATGCTTTTGGTGATGCCGTTTTATTAGTTCAACAATCACCAGAACAATACACC
CAACAATTCCAATTCCAAGCTACCCCATCAGAACAAGAATCATTCCCAAATGGTTTATAC
ACTGTCCAAGCTCTCGTTTGTGAAGGTTCATGTGGTTCACCACATCCAAACACTTACACT
CTTGCCAACGGTACCACCACTTTCACCATCTCTGGTGCTGATTCTTCATCAATGTCTGGT
GCTGGTTCTTTCTCTGGTTCTTCCCAATCAACCCAAACTGGTGCCGCCTCTGGTTCAGGT
TCAGGTTTTGCTTTATTTTAAAAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence
rprscfirfssn*ptkrycrwnihplnclhcyqhhrhwsisfqyhrsnr*cfw*crfiss
titrtihptipipsypirtriipkwfihcpssrl*rfmwfttskhlhscqryhhfhhlwc
*ffinvwcwfflwffpinpnwcrlwfrfrfcfilkkyllk*IFNFIIFYL---

---AAASLDLVQINPQNGTVGGTFTLSIAYTVTNTIATGQLAFNIIDPTGNAFGDAVLLV
QQSPEQYTQQFQFQATPSEQESFPNGLYTVQALVCEGSCGSPHPNTYTLANGTTTFTISG
ADSSSMSGAGSFSGSSQSTQTGAASGSGSGFALF*k


Translated Amino Acid sequence (All Frames)
Frame A:
rvraaasldlvqinpqngtvggtftlsiaytvtntiatgqlafniidptgnafgdavllv
qqspeqytqqfqfqatpseqesfpnglytvqalvcegscgsphpntytlangtttftisg
adsssmsgagsfsgssqstqtgaasgsgsgfalf*knty*nkylil*ffi*---

---rscfirfssn*ptkrycrwnihplnclhcyqhhrhwsisfqyhrsnr*cfw*crfis
stitrtihptipipsypirtriipkwfihcpssrl*rfmwfttskhlhscqryhhfhhlw
c*ffinvwcwfflwffpinpnwcrlwfrfrfcfilkk

Frame B:
asaqllh*i*fklthktvlsvehspsqlltllptpsplvn*lsissiqpvmllvmpfy*f
nnhqnntpnnsnsklphqnknhsqmvytlsklsfvkvhvvhhiqtltllptvpplspslv
lilhqclvlvlslvlpnqpklvpplvqvqvllyfkkilikini*fynflfn---

---AAASLDLVQINPQNGTVGGTFTLSIAYTVTNTIATGQLAFNIIDPTGNAFGDAVLLV
QQSPEQYTQQFQFQATPSEQESFPNGLYTVQALVCEGSCGSPHPNTYTLANGTTTFTISG
ADSSSMSGAGSFSGSSQSTQTGAASGSGSGFALF*k

Frame C:
rprscfirfssn*ptkrycrwnihplnclhcyqhhrhwsisfqyhrsnr*cfw*crfiss
titrtihptipipsypirtriipkwfihcpssrl*rfmwfttskhlhscqryhhfhhlwc
*ffinvwcwfflwffpinpnwcrlwfrfrfcfilkkyllk*IFNFIIFYL---

---qllh*i*fklthktvlsvehspsqlltllptpsplvn*lsissiqpvmllvmpfy*f
nnhqnntpnnsnsklphqnknhsqmvytlsklsfvkvhvvhhiqtltllptvpplspslv
lilhqclvlvlslvlpnqpklvpplvqvqvllyfkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI490 (VSI490Q) /CSM/VS/VSI4-D/VSI490Q.Seq.d/ 902 0.0
VSF151 (VSF151Q) /CSM/VS/VSF1-C/VSF151Q.Seq.d/ 902 0.0
VSD390 (VSD390Q) /CSM/VS/VSD3-D/VSD390Q.Seq.d/ 902 0.0
VSC485 (VSC485Q) /CSM/VS/VSC4-D/VSC485Q.Seq.d/ 902 0.0
VSB211 (VSB211Q) /CSM/VS/VSB2-A/VSB211Q.Seq.d/ 902 0.0
FC-AA21 (FC-AA21Q) /CSM/FC/FC-AA/FC-AA21Q.Seq.d/ 902 0.0
FC-020 (FC-020Q) /CSM/CG/CG-FC/FC-020Q.Seq.d/ 902 0.0
VSJ484 (VSJ484Q) /CSM/VS/VSJ4-D/VSJ484Q.Seq.d/ 894 0.0
VSC373 (VSC373Q) /CSM/VS/VSC3-D/VSC373Q.Seq.d/ 894 0.0
FC-BO02 (FC-BO02Q) /CSM/FC/FC-BO/FC-BO02Q.Seq.d/ 894 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF140780|AF140780.1 Dictyostelium discoideum countin gene, complete cds. 902 0.0 1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 902 0.0 5
AI444226|AI444226.1 fb47a11.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA 5', mRNA sequence. 36 0.057 2
CB980143|CB980143.1 CAB70002_IIIaF_C08 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70002_IIIaF_C08 5', mRNA sequence. 36 0.066 2
CB980214|CB980214.1 CAB70002_IIIaR_C08 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70002_IIIaR_C08 3', mRNA sequence. 36 0.067 2
CF212972|CF212972.1 CGF1000636_A06 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0003_IVR_A06 3', mRNA sequence. 36 0.079 2
X15055|X15055.1 Flounder (Paralichthys olivaceus) mRNA for growth hormone precursor. 38 0.35 2
M23439|M23439.1 Flounder growth hormone (fGH) mRNA, complete cds. 38 0.36 2
AF257742|AF257742.1 Danio rerio amyloid precursor protein mRNA, partial cds. 36 0.37 2
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds. 32 0.60 4
dna update 2003. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q86IV5) RecName: Full=Countin-1; Flags: Precursor; &AC116986_1... 234 4e-60
AF140780_1(AF140780|pid:none) Dictyostelium discoideum countin g... 234 4e-60
(Q86HV8) RecName: Full=Countin-3; Flags: Precursor; &AB211530_1... 129 2e-28
(Q8WSR7) RecName: Full=Countin-2; Flags: Precursor; &AB067573_1... 109 2e-22
(Q554K2) RecName: Full=Countin-like protein; Flags: Precursor; 55 3e-06
AC116956_1(AC116956|pid:none) Dictyostelium discoideum chromosom... 55 3e-06
CP000682_1469(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 38 0.47
AM398681_673(AM398681|pid:none) Flavobacterium psychrophilum JIP... 34 6.8

protein update 2009. 3.20
PSORT

psg: 0.95 gvh: 0.48 alm: 0.29 top: 0.40 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
20.0 %: nuclear
16.0 %: mitochondrial
4.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall

>> prediction for VSD390 is end

5' end seq. ID VSD390F
5' end seq.
>VSD390F.Seq
CGCGTCCGCGCAGCTGCTTCATTAGATTTAGTTCAAATTAACCCACAAAACGGTACTGTC
GGTGGAACATTCACCCTCTCAATTGCTTACACTGTTACCAACACCATCGCCACTGGTCAA
TTAGCTTTCAATATCATCGATCCAACCGGTAATGCTTTTGGTGATGCCGTTTTATTAGTT
CAACAATCACCAGAACAATACACCCAACAATTCCAATTCCAAGCTACCCCATCAGAACAA
GAATCATTCCCAAATGGTTTATACACTGTCCAAGCTCTCGTTTGTGAAGGTTCATGTGGT
TCACCACATCCAAACACTTACACTCTTGCCAACGGTACCACCACTTTCACCATCTCTGGT
GCTGATTCTTCATCAATGTCTGGTGCTGGTTCTTTCTCTGGTTCTTCCCAATCAACCCAA
ACTGGTGCCGCCTCTGGTTCAGGTTCAGGTTTTGCTTTATTTTAAAAAAATACTTATTAA
AATAAATATTTAATTTTATAATTTTTTATTTAAT----------
Length of 5' end seq. 514
3' end seq. ID VSD390Z
3' end seq.
>VSD390Z.Seq
----------CGCAGCTGCTTCATTAGATTTAGTTCAAATTAACCCACAAAACGGTACTG
TCGGTGGAACATTCACCCTCTCAATTGCTTACACTGTTACCAACACCATCGCCACTGGTC
AATTAGCTTTCAATATCATCGATCCAACCGGTAATGCTTTTGGTGATGCCGTTTTATTAG
TTCAACAATCACCAGAACAATACACCCAACAATTCCAATTCCAAGCTACCCCATCAGAAC
AAGAATCATTCCCAAATGGTTTATACACTGTCCAAGCTCTCGTTTGTGAAGGTTCATGTG
GTTCACCACATCCAAACACTTACACTCTTGCCAACGGTACCACCACTTTCACCATCTCTG
GTGCTGATTCTTCATCAATGTCTGGTGCTGGTTCTTTCTCTGGTTCTTCCCAATCAACCC
AAACTGGTGCCGCCTCTGGTTCAGGTTCAGGTTTTGCTTTATTTTAAAAAAA
Length of 3' end seq. 462
Connected seq. ID VSD390P
Connected seq.
>VSD390P.Seq
CGCGTCCGCGCAGCTGCTTCATTAGATTTAGTTCAAATTAACCCACAAAACGGTACTGTC
GGTGGAACATTCACCCTCTCAATTGCTTACACTGTTACCAACACCATCGCCACTGGTCAA
TTAGCTTTCAATATCATCGATCCAACCGGTAATGCTTTTGGTGATGCCGTTTTATTAGTT
CAACAATCACCAGAACAATACACCCAACAATTCCAATTCCAAGCTACCCCATCAGAACAA
GAATCATTCCCAAATGGTTTATACACTGTCCAAGCTCTCGTTTGTGAAGGTTCATGTGGT
TCACCACATCCAAACACTTACACTCTTGCCAACGGTACCACCACTTTCACCATCTCTGGT
GCTGATTCTTCATCAATGTCTGGTGCTGGTTCTTTCTCTGGTTCTTCCCAATCAACCCAA
ACTGGTGCCGCCTCTGGTTCAGGTTCAGGTTTTGCTTTATTTTAAAAAAATACTTATTAA
AATAAATATTTAATTTTATAATTTTTTATTTAAT----------CGCAGCTGCTTCATTA
GATTTAGTTCAAATTAACCCACAAAACGGTACTGTCGGTGGAACATTCACCCTCTCAATT
GCTTACACTGTTACCAACACCATCGCCACTGGTCAATTAGCTTTCAATATCATCGATCCA
ACCGGTAATGCTTTTGGTGATGCCGTTTTATTAGTTCAACAATCACCAGAACAATACACC
CAACAATTCCAATTCCAAGCTACCCCATCAGAACAAGAATCATTCCCAAATGGTTTATAC
ACTGTCCAAGCTCTCGTTTGTGAAGGTTCATGTGGTTCACCACATCCAAACACTTACACT
CTTGCCAACGGTACCACCACTTTCACCATCTCTGGTGCTGATTCTTCATCAATGTCTGGT
GCTGGTTCTTTCTCTGGTTCTTCCCAATCAACCCAAACTGGTGCCGCCTCTGGTTCAGGT
TCAGGTTTTGCTTTATTTTAAAAAAA
Length of connected seq. 976
Full length Seq ID -
Full length Seq. -
Length of full length seq. -