VSD396
Library VS
(Link to library)
Clone ID VSD396
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15504-1
Original site URL
Representative seq. ID VSD396P
(Link to Original site)
Representative DNA sequence
>VSD396 (VSD396Q) /CSM/VS/VSD3-D/VSD396Q.Seq.d/
CTCAGATGCCTACCCAATGACTGAAATCAACAATGGTTTAATCTATGAAGTCCAAGCTAA
AATGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAACGCTGCTTCTGAAGA
AACCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTTATCAACGTTGTTGA
TGCTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACTGGTTACATTAAAGC
TTACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGCCGTGTTGACGCCTT
CAAAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATT
CTACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTACTACAAACCAGG
TGAAGTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGAATCAGTTAAATATTAAAA
TAATTTTTTCAAAGTGTTATAATAAATGGTCTTATAAAAAAAAAAXXXXXXXXXXGCTCA
GATGCCTACCCAATGACTGAAATCAACAAAATGTTTAATCTATGAAGTCCAAGCTAAAAT
GGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAACGCTGCTTCTGAAGAAAC
CGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTTATCAACGTTGTTGATGC
TATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACTGGTTACATTAAAGCTTA
CATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGCCGTGTTGACGCCTTCAA
AAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATTCTA
CACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTACTACAAACCAGGTGA
AGTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGAATCAGTTAAATATTAAAATAA
TTTTTTCAAAGTGTTATAATAAA
sequence update 2001. 3.22
Translated Amino Acid sequence
qmptq*lkstmv*smksklkwspli*mlkltlvptlllkkpkkmkvlimlvanklstllm
l*dllkphsiknptlvtlklt*rkflpnsltitqavltpskrmplilsnqfsvnstntns
tlvkiwmlmvmsl*cttnqvkliqsfytsktv*NQLNIKIIFSKCYNKWSYKKK---

---SDAYPMTEINKMFNL*sps*nghh*frc*s*hwcqrcf*rnrrr*rc**cw*qtsyq
rc*cyetc*nlir*kilhwlh*slhegsscqtr*q*pkpc*rlqkgcr*fcqissr*irr
iqilhw*kygc*wscrfnvlqtr*s*snlfilqrrfris*ilk*ffqsvii


Translated Amino Acid sequence (All Frames)
Frame A:
lrclpnd*nqqwfnl*sps*nghh*frc*s*hwcqrcf*rnrrr*rc**cw*qtsyqrc*
cyetc*nlir*kilhwlh*slhegsscqtr*q*pkpc*rlqkgcr*fcqissr*irriqi
lhw*kygc*wscrfnvlqtr*s*snlfilqrrfris*ilk*ffqsviinglikkk---

---aqmptq*lkstkcliyevqakmvtidldvkvntganaaseeteedegvdnagskqvi
nvvdamrlvetsfdkksytgyikaymkevlakladnnpsrvdafkkdaadfvksvlgkfd
eykfytgenmdadghvalmyykpgevdpiflyfkdglesvky*nnffkvl**

Frame B:
sdaypmteinngliyevqakmvtidldvkvntganaaseeteedegvdnagskqvinvvd
amrlvetsfdkksytgyikaymkevlakladnnpsrvdafkkdaadfvksvlgkfdeykf
ytgenmdadghvalmyykpgevdpiflyfkdglesvky*nnffkvl**mvl*kk---

---lrclpnd*nqqnv*smksklkwspli*mlkltlvptlllkkpkkmkvlimlvankls
tllml*dllkphsiknptlvtlklt*rkflpnsltitqavltpskrmplilsnqfsvnst
ntnstlvkiwmlmvmsl*cttnqvkliqsfytsktv*nqlnikiifskcynk

Frame C:
qmptq*lkstmv*smksklkwspli*mlkltlvptlllkkpkkmkvlimlvanklstllm
l*dllkphsiknptlvtlklt*rkflpnsltitqavltpskrmplilsnqfsvnstntns
tlvkiwmlmvmsl*cttnqvkliqsfytsktv*NQLNIKIIFSKCYNKWSYKKK---

---SDAYPMTEINKMFNL*sps*nghh*frc*s*hwcqrcf*rnrrr*rc**cw*qtsyq
rc*cyetc*nlir*kilhwlh*slhegsscqtr*q*pkpc*rlqkgcr*fcqissr*irr
iqilhw*kygc*wscrfnvlqtr*s*snlfilqrrfris*ilk*ffqsvii

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSE792 (VSE792Q) /CSM/VS/VSE7-D/VSE792Q.Seq.d/ 1021 0.0
VSE636 (VSE636Q) /CSM/VS/VSE6-B/VSE636Q.Seq.d/ 1021 0.0
VSE615 (VSE615Q) /CSM/VS/VSE6-A/VSE615Q.Seq.d/ 1021 0.0
VSE394 (VSE394Q) /CSM/VS/VSE3-D/VSE394Q.Seq.d/ 1021 0.0
VSE221 (VSE221Q) /CSM/VS/VSE2-A/VSE221Q.Seq.d/ 1021 0.0
VSD396 (VSD396Q) /CSM/VS/VSD3-D/VSD396Q.Seq.d/ 1021 0.0
VSC849 (VSC849Q) /CSM/VS/VSC8-C/VSC849Q.Seq.d/ 1021 0.0
VSC525 (VSC525Q) /CSM/VS/VSC5-B/VSC525Q.Seq.d/ 1021 0.0
VSA705 (VSA705Q) /CSM/VS/VSA7-A/VSA705Q.Seq.d/ 1021 0.0
VSA456 (VSA456Q) /CSM/VS/VSA4-C/VSA456Q.Seq.d/ 1021 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ303651|AJ303651.1 Plasmodium chabaudi genome survey sequence, clone PC10a6.p1t. 38 0.015 2
AC121949|AC121949.3 Mus musculus chromosome 18 clone RP24-215I11, complete sequence. 48 0.22 4
X70063|X70063.1 C.tentans Sp38-40.A and Sp38-40.B genes. 36 0.45 2
AC095423|AC095423.7 Rattus norvegicus clone CH230-7C18, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 42 0.67 5
AX323654|AX323654.1 Sequence 142 from Patent WO0192565. 42 0.71 3
AX277959|AX277959.1 Sequence 122 from Patent WO0177375. 42 0.71 3
AR319145|AR319145.1 Sequence 1695 from patent US 6562958. 36 0.80 2
BJ165766|BJ165766.1 Physcomitrella patens subsp. patens cDNA clone:pph5j04, 3' end, single read. 46 0.88 1
BQ385705|BQ385705.1 NISC_mn13h03.x1 NICHD XGC Ov1 Xenopus laevis cDNA clone IMAGE:5073628 3', mRNA sequence. 46 0.88 1
AL086420|AL086420.1 Arabidopsis thaliana genome survey sequence T7 end of BAC F12J9 of IGF library from strain Columbia of Arabidopsis thaliana. 34 0.92 2
dna update 2003. 8.21
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q4PF30) RecName: Full=Translationally-controlled tumor protein ... 139 1e-31
(Q10344) RecName: Full=Translationally-controlled tumor protein ... 139 1e-31
(Q4IJT5) RecName: Full=Translationally-controlled tumor protein ... 123 9e-27
FN392320_557(FN392320|pid:none) Pichia pastoris GS115 chromosome... 123 1e-26
DQ324044_1(DQ324044|pid:none) Cyprinus carpio translationally-co... 122 2e-26
(Q9DGK4) RecName: Full=Translationally-controlled tumor protein;... 122 2e-26
CR339054_4(CR339054|pid:none) Zebrafish DNA sequence from clone ... 122 2e-26
CP000500_406(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 122 2e-26
AB372535_1(AB372535|pid:none) Cadophora gregata f. sp. adzukicol... 121 5e-26
(Q944W6) RecName: Full=Translationally-controlled tumor protein ... 121 5e-26
protein update 2009. 7.29
PSORT

psg: 0.55 gvh: 0.12 alm: 0.65 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
24.0 %: mitochondrial
16.0 %: cytoplasmic
8.0 %: cytoskeletal

>> prediction for VSD396 is nuc

5' end seq. ID VSD396F
5' end seq.
>VSD396F.Seq
CTCAGATGCCTACCCAATGACTGAAATCAACAATGGTTTAATCTATGAAGTCCAAGCTAA
AATGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAACGCTGCTTCTGAAGA
AACCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTTATCAACGTTGTTGA
TGCTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACTGGTTACATTAAAGC
TTACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGCCGTGTTGACGCCTT
CAAAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATT
CTACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTACTACAAACCAGG
TGAAGTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGAATCAGTTAAATATTAAAA
TAATTTTTTCAAAGTGTTATAATAAATGGTCTTATAAAAAAAAAA----------
Length of 5' end seq. 525
3' end seq. ID VSD396Z
3' end seq.
>VSD396Z.Seq
----------GCTCAGATGCCTACCCAATGACTGAAATCAACAAAATGTTTAATCTATGA
AGTCCAAGCTAAAATGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAACGC
TGCTTCTGAAGAAACCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTTAT
CAACGTTGTTGATGCTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACTGG
TTACATTAAAGCTTACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGCCG
TGTTGACGCCTTCAAAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTCGA
CGAATACAAATTCTACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTA
CTACAAACCAGGTGAAGTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGAATCAGT
TAAATATTAAAATAATTTTTTCAAAGTGTTATAATAAA
Length of 3' end seq. 508
Connected seq. ID VSD396P
Connected seq.
>VSD396P.Seq
CTCAGATGCCTACCCAATGACTGAAATCAACAATGGTTTAATCTATGAAGTCCAAGCTAA
AATGGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAACGCTGCTTCTGAAGA
AACCGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTTATCAACGTTGTTGA
TGCTATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACTGGTTACATTAAAGC
TTACATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGCCGTGTTGACGCCTT
CAAAAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATT
CTACACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTACTACAAACCAGG
TGAAGTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGAATCAGTTAAATATTAAAA
TAATTTTTTCAAAGTGTTATAATAAATGGTCTTATAAAAAAAAAA----------GCTCA
GATGCCTACCCAATGACTGAAATCAACAAAATGTTTAATCTATGAAGTCCAAGCTAAAAT
GGTCACCATTGATTTAGATGTTAAAGTTAACACTGGTGCCAACGCTGCTTCTGAAGAAAC
CGAAGAAGATGAAGGTGTTGATAATGCTGGTAGCAAACAAGTTATCAACGTTGTTGATGC
TATGAGACTTGTTGAAACCTCATTCGATAAAAAATCCTACACTGGTTACATTAAAGCTTA
CATGAAGGAAGTTCTTGCCAAACTCGCTGACAATAACCCAAGCCGTGTTGACGCCTTCAA
AAAGGATGCCGCTGATTTTGTCAAATCAGTTCTCGGTAAATTCGACGAATACAAATTCTA
CACTGGTGAAAATATGGATGCTGATGGTCATGTCGCTTTAATGTACTACAAACCAGGTGA
AGTTGATCCAATCTTTTTATACTTCAAAGACGGTTTAGAATCAGTTAAATATTAAAATAA
TTTTTTCAAAGTGTTATAATAAA
Length of connected seq. 1033
Full length Seq ID -
Full length Seq. -
Length of full length seq. -