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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSD732
Library VS
(Link to library)
Clone ID VSD732
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15178-1
Original site URL
Representative seq. ID VSD732P
(Link to Original site)
Representative DNA sequence 
>VSD732 (VSD732Q) /CSM/VS/VSD7-B/VSD732Q.Seq.d/
AAAATTCAATTAGAAATTTCAGTTCAAGTATATCAAATTATAGTAAAATGACAGGAAAAG
TTGTAGTTAAAACCACTAATGCACCAGGTGCTATTGGCCCATACAGTCAAGCAATTATTG
CTAACAATCAAGTTTTCGTTTCTGGTTGTTTAGGTATTGATAAAGATACTATGCAATTCA
CATCTGAAACTGATGTTAGTATTCAAACTAAACTTGCTTTAACAAACATGAAAAACATTG
TTGAAGCTGCTGGTTCATCAATGGAAAAAGTTGTTAAAACTACCATCTTATTAAAATCAA
TGGATGATTTCCAAGCTGTTAACACTGTCTATTCTACTTGTAAGTGTTTACAATCAATGA
TTTATTAAATTAATAATTGGTTATTGATTCATATTAAAAACTAATTAAATTAATTTTAAT
AAAATAGTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGCTTGTTTACCA
AAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACCGAGGGTAAATCA
AATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATAGTTTATTCTATTA
TTGTAAAAAAGAACTAAAAAAAAAAXXXXXXXXXXAAAATTCAATTAGAAATTTCAGTTC
AAGTATATCAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACTAATGCACC
AGGTGCTATTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTTTCTGG
TTGTTTAGGTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGTATTCA
AACTAAACTTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCAATGGA
AAAAGTTGTTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTTAACAC
TGTCTATTCTACTTGTAAGTGTTTACAATCAATGATTTATTAAATTAATAATTGGTTATT
GATTCATATTAAAAACTAATTAAATTAATTTTAATAAAATAGTCTTCCCAGTTGACCCAC
CAGCTAGATCAACCTTTGCTGTTGCTTGTTTACCAAAGAATGCTTTAGTAGAAATTGAAG
CTATTGCAATTCACCAATGAACCGAGGGTAAATCAAATAATATCATCAATTCAAAATTAT
AAATAATAAATAATAAGTAATAGTTTATTCTATTATTGTAAAAAAG
sequence update 2001. 3.22
Translated Amino Acid sequence 
kfn*kfqfkyikl**ndrkscs*nh*ctrcywpiqssnyc*qssfrfwlfry**ryyaih
i*n*c*ysn*tcfnkhekhc*scwfingksc*nyhliking*fpsc*hclfyl*vftind
lln**lvidsy*kliklilik*ssqlthqldqpllllvyqrml**klkllqftneprvnq
iissiqnyk**IISNSLFYYCKKELKKK---

---NSIRNFSSSISNYSKMTGKVVVKTTNAPGAIGPYSQAIIANNQVFVSGCLGIDKDTM
QFTSETDVSIQTKLALTNMKNIVEAAGSSMEKVVKTTILLKSMDDFQAVNTVYSTCKCLQ
SMIY*innwllihikn*ln*f**nslps*pts*inlccclftkecfsrn*sycnspmnrg
*ik*yhqfkiinnk**vivysiivkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kiqleisvqvyqiivk*qekl*lkplmhqvllahtvkqllltikfsflvv*vlikilcns
hlklmlvfklnll*qt*ktllkllvhqwkkllklpsy*nqwmisklltlsillvsvynq*
fikliigy*filktn*infnkivfpvdpparstfavaclpknalveieaiaihq*tegks
nniinskl*iinnk**filll*krtkkk---

---kiqleisvqvyqiivk*qekl*lkplmhqvllahtvkqllltikfsflvv*vlikil
cnshlklmlvfklnll*qt*ktllkllvhqwkkllklpsy*nqwmisklltlsillvsvy
nq*fikliigy*filktn*infnkivfpvdpparstfavaclpknalveieaiaihq*te
gksnniinskl*iinnk**filll*k

Frame B:
kfn*kfqfkyikl**ndrkscs*nh*ctrcywpiqssnyc*qssfrfwlfry**ryyaih
i*n*c*ysn*tcfnkhekhc*scwfingksc*nyhliking*fpsc*hclfyl*vftind
lln**lvidsy*kliklilik*ssqlthqldqpllllvyqrml**klkllqftneprvnq
iissiqnyk**IISNSLFYYCKKELKKK---

---kfn*kfqfkyikl**ndrkscs*nh*ctrcywpiqssnyc*qssfrfwlfry**ryy
aihi*n*c*ysn*tcfnkhekhc*scwfingksc*nyhliking*fpsc*hclfyl*vft
indlln**lvidsy*kliklilik*ssqlthqldqpllllvyqrml**klkllqftnepr
vnqiissiqnyk**iisnslfyyckk

Frame C:
nsirnfsssisnyskmtgkvvvkttnapgaigpysqaiiannqvfvsgclgidkdtmqft
setdvsiqtklaltnmkniveaagssmekvvkttillksmddfqavntvystckclqsmi
y*innwllihikn*ln*f**nslps*pts*inlccclftkecfsrn*sycnspmnrg*ik
*yhqfkiinnk**vivysiivkkn*kk---

---NSIRNFSSSISNYSKMTGKVVVKTTNAPGAIGPYSQAIIANNQVFVSGCLGIDKDTM
QFTSETDVSIQTKLALTNMKNIVEAAGSSMEKVVKTTILLKSMDDFQAVNTVYSTCKCLQ
SMIY*innwllihikn*ln*f**nslps*pts*inlccclftkecfsrn*sycnspmnrg
*ik*yhqfkiinnk**vivysiivkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD732 (VSD732Q) /CSM/VS/VSD7-B/VSD732Q.Seq.d/                       1057   0.0
VFN414 (VFN414Q) /CSM/VF/VFN4-A/VFN414Q.Seq.d/                        658   0.0
VSI115 (VSI115Q) /CSM/VS/VSI1-A/VSI115Q.Seq.d/                        632   e-180
AFM381 (AFM381Q) /CSM/AF/AFM3-D/AFM381Q.Seq.d/                        618   e-176
FC-BE13 (FC-BE13Q) /CSM/FC/FC-BE/FC-BE13Q.Seq.d/                      613   e-174
SSC695 (SSC695Q) /CSM/SS/SSC6-D/SSC695Q.Seq.d/                        605   e-172
SHA718 (SHA718Q) /CSM/SH/SHA7-A/SHA718Q.Seq.d/                        605   e-172
VSF418 (VSF418Q) /CSM/VS/VSF4-A/VSF418Q.Seq.d/                        585   e-166
VSH656 (VSH656Q) /CSM/VS/VSH6-C/VSH656Q.Seq.d/                        517   e-145
SSA673 (SSA673Q) /CSM/SS/SSA6-D/SSA673Q.Seq.d/                         50   8e-05
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264482) Dictyostelium discoideum vegetative cDNA clone:VS...   712   0.0    3
(AU264481) Dictyostelium discoideum vegetative cDNA clone:VS...   712   0.0    3
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...   381   0.0    8
(BJ416746) Dictyostelium discoideum cDNA clone:ddv27l04, 5' ...   658   0.0    3
(AU268170) Dictyostelium discoideum vegetative cDNA clone:VS...   632   0.0    3
(BJ346982) Dictyostelium discoideum cDNA clone:dda25b21, 3' ...   618   0.0    3
(BJ329638) Dictyostelium discoideum cDNA clone:dda25b21, 5' ...   618   0.0    3
(BJ391747) Dictyostelium discoideum cDNA clone:dds25d05, 5' ...   605   0.0    3
(AU265204) Dictyostelium discoideum vegetative cDNA clone:VS...   585   0.0    3
(AU284600) Dictyostelium discoideum gamete cDNA clone:FC-BE1...   613   0.0    3
dna update 2009. 7.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001072_955(CP001072|pid:none) Helicobacter pylori Shi470, comp...    97   3e-24
AP008230_1335(AP008230|pid:none) Desulfitobacterium hafniense Y5...    93   6e-24
CP000241_928(CP000241|pid:none) Helicobacter pylori HPAG1, compl...    96   8e-24
CP001217_934(CP001217|pid:none) Helicobacter pylori P12, complet...    95   1e-23
(O25598) RecName: Full=UPF0076 protein HP_0944;  &AE000511_928(A...    94   2e-23
BT077148_1(BT077148|pid:none) Caligus rogercresseyi clone crog-e...    94   5e-23
AM260522_1180(AM260522|pid:none) Helicobacter acinonychis str. S...    92   7e-23
AK061373_1(AK061373|pid:none) Oryza sativa Japonica Group cDNA c...    93   8e-23
BT039439_1(BT039439|pid:none) Zea mays full-length cDNA clone ZM...    90   1e-22
CP000686_2882(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    87   3e-22
protein update 2009. 7.30
PSORT 

 psg: 0.29  gvh: 0.42  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VSD732 is nuc
5' end seq. ID VSD732F
5' end seq. 
>VSD732F.Seq
AAAATTCAATTAGAAATTTCAGTTCAAGTATATCAAATTATAGTAAAATGACAGGAAAAG
TTGTAGTTAAAACCACTAATGCACCAGGTGCTATTGGCCCATACAGTCAAGCAATTATTG
CTAACAATCAAGTTTTCGTTTCTGGTTGTTTAGGTATTGATAAAGATACTATGCAATTCA
CATCTGAAACTGATGTTAGTATTCAAACTAAACTTGCTTTAACAAACATGAAAAACATTG
TTGAAGCTGCTGGTTCATCAATGGAAAAAGTTGTTAAAACTACCATCTTATTAAAATCAA
TGGATGATTTCCAAGCTGTTAACACTGTCTATTCTACTTGTAAGTGTTTACAATCAATGA
TTTATTAAATTAATAATTGGTTATTGATTCATATTAAAAACTAATTAAATTAATTTTAAT
AAAATAGTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGCTTGTTTACCA
AAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACCGAGGGTAAATCA
AATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATAGTTTATTCTATTA
TTGTAAAAAAGAACTAAAAAAAAAA----------
Length of 5' end seq. 625
3' end seq. ID VSD732Z
3' end seq. 
>VSD732Z.Seq
----------AAAATTCAATTAGAAATTTCAGTTCAAGTATATCAAATTATAGTAAAATG
ACAGGAAAAGTTGTAGTTAAAACCACTAATGCACCAGGTGCTATTGGCCCATACAGTCAA
GCAATTATTGCTAACAATCAAGTTTTCGTTTCTGGTTGTTTAGGTATTGATAAAGATACT
ATGCAATTCACATCTGAAACTGATGTTAGTATTCAAACTAAACTTGCTTTAACAAACATG
AAAAACATTGTTGAAGCTGCTGGTTCATCAATGGAAAAAGTTGTTAAAACTACCATCTTA
TTAAAATCAATGGATGATTTCCAAGCTGTTAACACTGTCTATTCTACTTGTAAGTGTTTA
CAATCAATGATTTATTAAATTAATAATTGGTTATTGATTCATATTAAAAACTAATTAAAT
TAATTTTAATAAAATAGTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGC
TTGTTTACCAAAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACCGA
GGGTAAATCAAATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATAGTT
TATTCTATTATTGTAAAAAAG
Length of 3' end seq. 611
Connected seq. ID VSD732P
Connected seq. 
>VSD732P.Seq
AAAATTCAATTAGAAATTTCAGTTCAAGTATATCAAATTATAGTAAAATGACAGGAAAAG
TTGTAGTTAAAACCACTAATGCACCAGGTGCTATTGGCCCATACAGTCAAGCAATTATTG
CTAACAATCAAGTTTTCGTTTCTGGTTGTTTAGGTATTGATAAAGATACTATGCAATTCA
CATCTGAAACTGATGTTAGTATTCAAACTAAACTTGCTTTAACAAACATGAAAAACATTG
TTGAAGCTGCTGGTTCATCAATGGAAAAAGTTGTTAAAACTACCATCTTATTAAAATCAA
TGGATGATTTCCAAGCTGTTAACACTGTCTATTCTACTTGTAAGTGTTTACAATCAATGA
TTTATTAAATTAATAATTGGTTATTGATTCATATTAAAAACTAATTAAATTAATTTTAAT
AAAATAGTCTTCCCAGTTGACCCACCAGCTAGATCAACCTTTGCTGTTGCTTGTTTACCA
AAGAATGCTTTAGTAGAAATTGAAGCTATTGCAATTCACCAATGAACCGAGGGTAAATCA
AATAATATCATCAATTCAAAATTATAAATAATAAATAATAAGTAATAGTTTATTCTATTA
TTGTAAAAAAGAACTAAAAAAAAAA----------AAAATTCAATTAGAAATTTCAGTTC
AAGTATATCAAATTATAGTAAAATGACAGGAAAAGTTGTAGTTAAAACCACTAATGCACC
AGGTGCTATTGGCCCATACAGTCAAGCAATTATTGCTAACAATCAAGTTTTCGTTTCTGG
TTGTTTAGGTATTGATAAAGATACTATGCAATTCACATCTGAAACTGATGTTAGTATTCA
AACTAAACTTGCTTTAACAAACATGAAAAACATTGTTGAAGCTGCTGGTTCATCAATGGA
AAAAGTTGTTAAAACTACCATCTTATTAAAATCAATGGATGATTTCCAAGCTGTTAACAC
TGTCTATTCTACTTGTAAGTGTTTACAATCAATGATTTATTAAATTAATAATTGGTTATT
GATTCATATTAAAAACTAATTAAATTAATTTTAATAAAATAGTCTTCCCAGTTGACCCAC
CAGCTAGATCAACCTTTGCTGTTGCTTGTTTACCAAAGAATGCTTTAGTAGAAATTGAAG
CTATTGCAATTCACCAATGAACCGAGGGTAAATCAAATAATATCATCAATTCAAAATTAT
AAATAATAAATAATAAGTAATAGTTTATTCTATTATTGTAAAAAAG
Length of connected seq. 1236
Full length Seq ID -
Full length Seq. -
Length of full length seq. -