>VSE884 (VSE884Q) /CSM/VS/VSE8-D/VSE884Q.Seq.d/
XXXXXXXXXXCAAAATCGATTTAGAGAATCAACGTGTTGTTTCACAAAAGAGAGCAGCAT
CATGGTGTCAAAGCAAAGGTAACATTCCATACTTTGAAACTTCTGCCAAAGAAGCCATCA
ATGTTGAACAAGCTTTCCAAACCATTGCTAGAAATGCTATTAAATTAGAAGATGGTTTAG
TTTTCCCAATTCCAACTAATATTCAAGTCATTCCAGAACCACAACCAGCTAAATCAGGTT
GTTGTTAAATTAATATTTCATAAAAATAAATAATAATAAT

---KIDLENQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLEDGLV
FPIPTNIQVIPEPQPAKSGCC*inis*k*iii

Frame A:
---KIDLENQRVVSQKRAASWCQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLEDGLV
FPIPTNIQVIPEPQPAKSGCC*inis*k*iii


Frame B:
---ksi*rinvlfhkreqhhgvkakvtfhtlkllpkkpsmlnklskpllemlln*kmv*f
sqfqlifksfqnhnqlnqvvvklifhknk***


Frame C:
---nrfrestccftkessimvskqr*hsil*nfcqrshqc*tsfpnhc*kcy*irrwfsf
pnsn*ysshsrttts*irllln*yfikinnnn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE884 (VSE884Q) /CSM/VS/VSE8-D/VSE884Q.Seq.d/                        466   e-131
SSK735 (SSK735Q) /CSM/SS/SSK7-B/SSK735Q.Seq.d/                        466   e-131
SSJ532 (SSJ532Q) /CSM/SS/SSJ5-B/SSJ532Q.Seq.d/                        466   e-131
SSG433 (SSG433Q) /CSM/SS/SSG4-B/SSG433Q.Seq.d/                        466   e-131
SSE736 (SSE736Q) /CSM/SS/SSE7-B/SSE736Q.Seq.d/                        466   e-131
SSE716 (SSE716Q) /CSM/SS/SSE7-A/SSE716Q.Seq.d/                        466   e-131
SSE419 (SSE419Q) /CSM/SS/SSE4-A/SSE419Q.Seq.d/                        466   e-131
SSE192 (SSE192Q) /CSM/SS/SSE1-D/SSE192Q.Seq.d/                        466   e-131
SSC718 (SSC718Q) /CSM/SS/SSC7-A/SSC718Q.Seq.d/                        466   e-131
SSB755 (SSB755Q) /CSM/SS/SSB7-C/SSB755Q.Seq.d/                        460   e-129

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U02928|U02928.1 Dictyostelium discoideum Ax3 Rab7 mRNA, complete cds.   458  e-125  1
AJ560089|AJ560089.1 Antirrhinum majus EST, clone 018_1_12_d23.    74  1e-09  1
BF610229|BF610229.1 NXSI_056_E10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA clone NXSI_056_E10 5', mRNA sequence.    68  6e-08  1
BX254264|BX254264.1 Pinus pinaster xylem EST, clone PP095G12 similar to RAS RELATED  PROTEIN RAB7.    68  6e-08  1
AW290476|AW290476.1 NXNV027C10F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone NXNV027C10 5', mRNA sequence.    68  6e-08  1
CD027132|CD027132.1 NXNV027C10 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone NXNV027C10 5' similar to Arabidopsis thaliana sequence At1g52280 GTP-binding protein RAB7D, putative see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence.    68  6e-08  1
AF407337|AF407337.1 Lentinula edodes Ras-related protein Rab7 (Rab7) mRNA, complete cds.    68  6e-08  1
T14804|T14804.1 crs343 lambdaZAPST Ricinus communis cDNA clone pcrs343 similar to ras-related GTP-binding protein, mRNA sequence.    68  6e-08  1
CD018114|CD018114.1 NXLV_002_C09_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA clone NXLV_002_C09 5' similar to Arabidopsis thaliana sequence At1g52280 GTP-binding protein RAB7D, putative see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence.    62  4e-06  1
BX249394|BX249394.1 Pinus pinaster xylem EST, clone PP023E09 similar to RAS RELATED  PROTEIN RAB7.    62  4e-06  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY365246_1(AY365246|pid:none) Cucumis sativus putative GTP-bindi...    90   3e-17
BT051223_1(BT051223|pid:none) Medicago truncatula clone MTYF1_F2...    89   4e-17
GN106075_1(GN106075|pid:none) Sequence 10856 from Patent WO20090...    89   5e-17
BT083027_1(BT083027|pid:none) Anoplopoma fimbria clone afim-evh-...    89   6e-17
BC072717_1(BC072717|pid:none) Danio rerio zgc:91909, mRNA (cDNA ...    89   6e-17
BC054602_1(BC054602|pid:none) Danio rerio RAB7, member RAS oncog...    89   6e-17
(Q3T0F5) RecName: Full=Ras-related protein Rab-7a;  &BC102415_1(...    88   8e-17
EU596593_1(EU596593|pid:none) Ovis aries RAS oncogene family-lik...    87   1e-16
BT045800_1(BT045800|pid:none) Salmo salar clone ssal-rgf-531-287...    87   1e-16
AM457818_2(AM457818|pid:none) Vitis vinifera contig VV78X000502....    87   2e-16

 psg: 0.59  gvh: 0.41  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VSE884 is nuc

>VSE884Z.Seq
----------CAAAATCGATTTAGAGAATCAACGTGTTGTTTCACAAAAGAGAGCAGCAT
CATGGTGTCAAAGCAAAGGTAACATTCCATACTTTGAAACTTCTGCCAAAGAAGCCATCA
ATGTTGAACAAGCTTTCCAAACCATTGCTAGAAATGCTATTAAATTAGAAGATGGTTTAG
TTTTCCCAATTCCAACTAATATTCAAGTCATTCCAGAACCACAACCAGCTAAATCAGGTT
GTTGTTAAATTAATATTTCATAAAAATAAATAATAATAAT