>VSG367 (VSG367Q) /CSM/VS/VSG3-C/VSG367Q.Seq.d/
TTTTAATTTACACACACCATAATCAAATAATTAATTATAATTATAAAAAATGTTAATTGT
TTCAACAGGAGATCAACATGGCCTAGTTTTGGCTGTTTTAGCTATTGTTGCATTTGTTTT
ATTCCACAAATCAAATCATCGTTTCGCTTTCCATTTTGACATTGTAATTTTAGCAGCATG
TGCAGGTATTACATTCGCATTTTCATCAAATTCAGTAGTAACACAATTCGAATATATGTT
TGATTTAGCTGTTTCAGCATTGGTTGGAGGCTGTGCATTGTATGCTTTACAAAAGGGTCA
AAAATATATTGTATATGGTTATTTAATTCATGCAATTTGGGATTTATTACATCATAGTTT
TTTCCATGTTGCAACCACTAAGACTCCATATTGGTATCCAACTTTTTGTATGGTTTATGA
TTTCTTTGTTGCTTTTTATTATTTTTCAAAAAAATAAAATAATAAAATCAATTATGATTA
TTAAAAACAAAAAAAAAAXXXXXXXXXX

fnlhtp*snn*l*l*KMLIVSTGDQHGLVLAVLAIVAFVLFHKSNHRFAFHFDIVILAAC
AGITFAFSSNSVVTQFEYMFDLAVSALVGGCALYALQKGQKYIVYGYLIHAIWDLLHHSF
FHVATTKTPYWYPTFCMVYDFFVAFYYFSKK*nnkinydy*kqkk---

Frame A:
f*fthtiik*liiiiknvncfnrrstwpsfgcfsyccicfipqikssfrfpf*hcnfssm
cryyirifikfssntiriyv*fscfsigwrlcivcftkgskiyciwlfnscnlgfits*f
fpccnh*dsilvsnflygl*flccfllffkkik**nql*llktkk---


Frame B:
fnlhtp*snn*l*l*KMLIVSTGDQHGLVLAVLAIVAFVLFHKSNHRFAFHFDIVILAAC
AGITFAFSSNSVVTQFEYMFDLAVSALVGGCALYALQKGQKYIVYGYLIHAIWDLLHHSF
FHVATTKTPYWYPTFCMVYDFFVAFYYFSKK*nnkinydy*kqkk---


Frame C:
liythhnqiinynykkc*lfqqeinma*fwlf*lllhlfystnqiivslsiltl*f*qhv
qvlhshfhqiq**hnsnicli*lfqhwleavhcmlykrvknilymvi*fmqfgiyyiivf
smlqplrlhigiqlfvwfmislllfiifqknkiiksimiiknkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG367 (VSG367Q) /CSM/VS/VSG3-C/VSG367Q.Seq.d/                        886   0.0
VSI183 (VSI183Q) /CSM/VS/VSI1-D/VSI183Q.Seq.d/                        854   0.0
SSM764 (SSM764Q) /CSM/SS/SSM7-C/SSM764Q.Seq.d/                         40   0.032
SFC228 (SFC228Q) /CSM/SF/SFC2-B/SFC228Q.Seq.d/                         38   0.13
CFG115 (CFG115Q) /CSM/CF/CFG1-A/CFG115Q.Seq.d/                         38   0.13
VSF806 (VSF806Q) /CSM/VS/VSF8-A/VSF806Q.Seq.d/                         36   0.50
VHK212 (VHK212Q) /CSM/VH/VHK2-A/VHK212Q.Seq.d/                         36   0.50
VHA115 (VHA115Q) /CSM/VH/VHA1-A/VHA115Q.Seq.d/                         36   0.50
VFB393 (VFB393Q) /CSM/VF/VFB3-D/VFB393Q.Seq.d/                         36   0.50
SSM403 (SSM403Q) /CSM/SS/SSM4-A/SSM403Q.Seq.d/                         36   0.50

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL109737|AL109737.1 Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone  M28D5 (ESSAII project).    40  0.012  4
AL109819|AL109819.1 Arabidopsis thaliana DNA chromosome 4, BAC clone T28D5, partial sequence (ESSA project).    40  0.012  4
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    36  0.027  10
AP005429|AP005429.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0701F11, WORKING DRAFT SEQUENCE, 1 ordered pieces.    46  0.073  5
BZ400799|BZ400799.1 EINBX42TR EI_10_12_KB Entamoeba invadens genomic clone EINBX42, DNA sequence.    44  0.081  2
AA433390|AA433390.1 SWAMCA1605SK Brugia malayi adult male cDNA (SAW94NL-BmAM) Brugia malayi cDNA clone SWAMCA1605 5', mRNA sequence.    48  0.11  1
AC026855|AC026855.3 Homo sapiens chromosome 17 clone RP11-208F13, WORKING DRAFT SEQUENCE, 24 unordered pieces.    46  0.11  3
AX599046|AX599046.1 Sequence 386 from Patent WO02077272.          28  0.15  7
AC093122|AC093122.12 Homo sapiens 12 BAC RP11-317E2 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38  0.20  6
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.          36  0.25  9

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000532_57(CP000532|pid:none) Polaromonas naphthalenivorans CJ2...    40   0.030
(P34853) RecName: Full=NADH-ubiquinone oxidoreductase chain 4;  ...    34   1.6
AE017354_188(AE017354|pid:none) Legionella pneumophila subsp. pn...    33   2.8
AP006618_2315(AP006618|pid:none) Nocardia farcinica IFM 10152 DN...    33   2.8
CP000927_2633(CP000927|pid:none) Caulobacter sp. K31, complete g...    33   2.8
AJ010151_1(AJ010151|pid:none) Sordaria macrospora pro1 gene.           33   3.6
CP000462_2015(CP000462|pid:none) Aeromonas hydrophila subsp. hyd...    27   3.7
AJ238536_1(AJ238536|pid:none) Sordaria brevicollis pro1 gene (pa...    33   4.7
AC096673_14(AC096673|pid:none) Trypanosoma brucei chromosome 3 c...    33   4.8
CP001134_21(CP001134|pid:none) Vibrio fischeri MJ11 plasmid pMJ1...    32   6.2

 psg: 0.98  gvh: 0.66  alm: 0.33  top: 0.60  tms: 0.00  mit: 0.22  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	 12.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VSG367 is cyt

>VSG367F.Seq
TTTTAATTTACACACACCATAATCAAATAATTAATTATAATTATAAAAAATGTTAATTGT
TTCAACAGGAGATCAACATGGCCTAGTTTTGGCTGTTTTAGCTATTGTTGCATTTGTTTT
ATTCCACAAATCAAATCATCGTTTCGCTTTCCATTTTGACATTGTAATTTTAGCAGCATG
TGCAGGTATTACATTCGCATTTTCATCAAATTCAGTAGTAACACAATTCGAATATATGTT
TGATTTAGCTGTTTCAGCATTGGTTGGAGGCTGTGCATTGTATGCTTTACAAAAGGGTCA
AAAATATATTGTATATGGTTATTTAATTCATGCAATTTGGGATTTATTACATCATAGTTT
TTTCCATGTTGCAACCACTAAGACTCCATATTGGTATCCAACTTTTTGTATGGTTTATGA
TTTCTTTGTTGCTTTTTATTATTTTTCAAAAAAATAAAATAATAAAATCAATTATGATTA
TTAAAAACAAAAAAAAAA----------