VSI182
Library VS
(Link to library)
Clone ID VSI182
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U02965-1
Original site URL
Representative seq. ID VSI182P
(Link to Original site)
Representative DNA sequence
>VSI182 (VSI182Q) /CSM/VS/VSI1-D/VSI182Q.Seq.d/
CTTTAAACACAAATACACAATGAATAAATTATTATTAGCTTTCCTTTTCTTTGGTTTAAT
CGCCTCTGTTACTATTTCTATGAAAATTGATGTAAGAACACAAAGTGAACCAAATTTAGG
AGATATTCCATTATGTTTGATCTGTGACTTTGCTGTTGGTAAAATTGAAAAATATTTAGA
TGATAAAGCAAATACAACTGTTATCATTGACAAAGTTGAAAAGGATTGTAATATATTAAG
AAATAGTTGGATTGGAAAATGTAAAAATATCGTTACTGAATATGGTCCAAAAATCATTGA
CCTTTTGGAAAGTAACGAATCACCAAAAGCAGTTTGTGCTATCATCGATTTATGTTAATA
CCATTAAACAGAATTGAAACATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAA
AAATAGATTAAAAAAAAAAXXXXXXXXXXCTTTAAACACAAATACACAATGAATAAATTA
TTATTAGCTTTCCTTTTCTTTGGTTTAATCGCCTCTGTTACTATTTCTATGAAAATTGAT
GTAAGAACACAAAGTGAACCAAATTTAGGAGATATTCCATTATGTTTGATCTGTGACTTT
GCTGTTGGTAAAATTGAAAAATATTTAGATGATAAAGCAAATACAACTGTTATCATTGAC
AAAGTTGAAAAGGATTGTAATATATTAAGAAATAGTTGGATTGGAAAATGTAAAAATATC
GTTACTGAATATGGTCCAAAAATCATTGACCTTTTGGAAAGTAACGAATCACCAAAAGCA
GTTTGTGCTATCATCGATTTATGTTAATACCATTAAACAGAATTGAAACATAAAAATAAA
AATAAAAATAAAAATAAAA
sequence update 2001. 3.22
Translated Amino Acid sequence
fkhkytmnklllaflffgliasvtismkidvrtqsepnlgdiplclicdfavgkiekyld
dkanttviidkvekdcnilrnswigkcknivteygpkiidllesnespkavcaiidlc*y
h*TELKHKNKNKNKNKNKNKNRLKKK---

---FKHKYTMNKLLLAFLFFGLIASVTISMKIDVRTQSEPNLGDIPLCLICDFAVGKIEK
YLDDKANTTVIIDKVEKDCNILRNSWIGKCKNIVTEYGPKIIDLLESNESPKAVCAIIDL
C*yh*telkhknknknknk


Translated Amino Acid sequence (All Frames)
Frame A:
l*tqihne*iiisfpflwfnrlcyyfyen*ckntk*tkfrrysimfdl*lccw*n*kifr
**skyncyh*qs*kgl*yikk*ldwkm*kyry*iwsknh*pfgk*ritksslcyhrfmli
plnriet*k*k*k*k*k*k*k*ikkk---

---l*tqihne*iiisfpflwfnrlcyyfyen*ckntk*tkfrrysimfdl*lccw*n*k
ifr**skyncyh*qs*kgl*yikk*ldwkm*kyry*iwsknh*pfgk*ritksslcyhrf
mliplnriet*k*k*k*k*

Frame B:
fkhkytmnklllaflffgliasvtismkidvrtqsepnlgdiplclicdfavgkiekyld
dkanttviidkvekdcnilrnswigkcknivteygpkiidllesnespkavcaiidlc*y
h*TELKHKNKNKNKNKNKNKNRLKKK---

---FKHKYTMNKLLLAFLFFGLIASVTISMKIDVRTQSEPNLGDIPLCLICDFAVGKIEK
YLDDKANTTVIIDKVEKDCNILRNSWIGKCKNIVTEYGPKIIDLLESNESPKAVCAIIDL
C*yh*telkhknknknknk

Frame C:
lntntq*inyy*lsfslv*splllfl*klm*ehkvnqi*eifhyv*svtlllvklkni*m
ikqiqllsltklkriviy*eivglenvkisllnmvqksltfwkvtnhqkqfvlssiyvnt
ikqn*nikikikikikikikid*kk---

---lntntq*inyy*lsfslv*splllfl*klm*ehkvnqi*eifhyv*svtlllvklkn
i*mikqiqllsltklkriviy*eivglenvkisllnmvqksltfwkvtnhqkqfvlssiy
vntikqn*nikikikikik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSI182 (VSI182Q) /CSM/VS/VSI1-D/VSI182Q.Seq.d/ 753 0.0
SSF731 (SSF731Q) /CSM/SS/SSF7-B/SSF731Q.Seq.d/ 753 0.0
SSJ550 (SSJ550Q) /CSM/SS/SSJ5-C/SSJ550Q.Seq.d/ 674 0.0
AFL220 (AFL220Q) /CSM/AF/AFL2-A/AFL220Q.Seq.d/ 589 e-167
VSH879 (VSH879Q) /CSM/VS/VSH8-D/VSH879Q.Seq.d/ 40 0.055
FC-AV04 (FC-AV04Q) /CSM/FC/FC-AV/FC-AV04Q.Seq.d/ 36 0.85
FC-AB24 (FC-AB24Q) /CSM/FC/FC-AB/FC-AB24Q.Seq.d/ 36 0.85
FC-327 (FC-327Q) /CSM/CG/CG-FC/FC-327Q.Seq.d/ 36 0.85
AFF130 (AFF130Q) /CSM/AF/AFF1-B/AFF130Q.Seq.d/ 36 0.85
AFF114 (AFF114Q) /CSM/AF/AFF1-A/AFF114Q.Seq.d/ 36 0.85

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AU268282) Dictyostelium discoideum vegetative cDNA clone:VS... 753 0.0 1
(AU268281) Dictyostelium discoideum vegetative cDNA clone:VS... 753 0.0 1
(C91000) Dictyostelium discoideum slug cDNA, clone SSJ550. 674 0.0 1
(C93065) Dictyostelium discoideum slug cDNA, clone SSF731. 603 e-168 1
(BJ345242) Dictyostelium discoideum cDNA clone:dda23g06, 3' ... 224 e-160 3
(AU073024) Dictyostelium discoideum slug cDNA, clone SSF731. 472 e-128 1
(EK431504) 1095516155542 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.038 2
(AC184533) Strongylocentrotus purpuratus clone R3-4017I19, W... 46 0.058 3
(AP003234) Oryza sativa Japonica Group genomic DNA, chromoso... 42 0.089 6
(EK251607) 1095460282470 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.094 2
dna update 2009. 7. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CR388420_1(CR388420|pid:none) Zebrafish DNA sequence from clone ... 72 2e-11
BC056717_1(BC056717|pid:none) Danio rerio prosaposin, mRNA (cDNA... 72 2e-11
AF276996_1(AF276996|pid:none) Danio rerio lysosomal cofactor/neu... 72 2e-11
BT045905_1(BT045905|pid:none) Salmo salar clone ssal-rgf-536-147... 67 5e-10
BT045327_1(BT045327|pid:none) Salmo salar clone ssal-rgf-518-210... 64 8e-09
BT058972_1(BT058972|pid:none) Salmo salar clone ssal-rgf-517-167... 64 8e-09
BC080997_1(BC080997|pid:none) Xenopus laevis MGC80725 protein, m... 63 1e-08
U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m... 63 1e-08
BC054988_1(BC054988|pid:none) Xenopus laevis hypothetical protei... 59 2e-07
CR855698_1(CR855698|pid:none) Xenopus tropicalis finished cDNA, ... 59 3e-07
protein update 2009. 3.24
PSORT

psg: 0.19 gvh: 0.79 alm: 0.22 top: -0.03 tms: 0.07 mit: 0.24 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.15 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: nuclear
20.0 %: cytoplasmic
16.0 %: mitochondrial
16.0 %: Golgi
12.0 %: endoplasmic reticulum
4.0 %: vacuolar
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for VSI182 is nuc

5' end seq. ID VSI182F
5' end seq.
>VSI182F.Seq
CTTTAAACACAAATACACAATGAATAAATTATTATTAGCTTTCCTTTTCTTTGGTTTAAT
CGCCTCTGTTACTATTTCTATGAAAATTGATGTAAGAACACAAAGTGAACCAAATTTAGG
AGATATTCCATTATGTTTGATCTGTGACTTTGCTGTTGGTAAAATTGAAAAATATTTAGA
TGATAAAGCAAATACAACTGTTATCATTGACAAAGTTGAAAAGGATTGTAATATATTAAG
AAATAGTTGGATTGGAAAATGTAAAAATATCGTTACTGAATATGGTCCAAAAATCATTGA
CCTTTTGGAAAGTAACGAATCACCAAAAGCAGTTTGTGCTATCATCGATTTATGTTAATA
CCATTAAACAGAATTGAAACATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAA
AAATAGATTAAAAAAAAAA----------
Length of 5' end seq. 439
3' end seq. ID VSI182Z
3' end seq.
>VSI182Z.Seq
----------CTTTAAACACAAATACACAATGAATAAATTATTATTAGCTTTCCTTTTCT
TTGGTTTAATCGCCTCTGTTACTATTTCTATGAAAATTGATGTAAGAACACAAAGTGAAC
CAAATTTAGGAGATATTCCATTATGTTTGATCTGTGACTTTGCTGTTGGTAAAATTGAAA
AATATTTAGATGATAAAGCAAATACAACTGTTATCATTGACAAAGTTGAAAAGGATTGTA
ATATATTAAGAAATAGTTGGATTGGAAAATGTAAAAATATCGTTACTGAATATGGTCCAA
AAATCATTGACCTTTTGGAAAGTAACGAATCACCAAAAGCAGTTTGTGCTATCATCGATT
TATGTTAATACCATTAAACAGAATTGAAACATAAAAATAAAAATAAAAATAAAAATAAAA
Length of 3' end seq. 410
Connected seq. ID VSI182P
Connected seq.
>VSI182P.Seq
CTTTAAACACAAATACACAATGAATAAATTATTATTAGCTTTCCTTTTCTTTGGTTTAAT
CGCCTCTGTTACTATTTCTATGAAAATTGATGTAAGAACACAAAGTGAACCAAATTTAGG
AGATATTCCATTATGTTTGATCTGTGACTTTGCTGTTGGTAAAATTGAAAAATATTTAGA
TGATAAAGCAAATACAACTGTTATCATTGACAAAGTTGAAAAGGATTGTAATATATTAAG
AAATAGTTGGATTGGAAAATGTAAAAATATCGTTACTGAATATGGTCCAAAAATCATTGA
CCTTTTGGAAAGTAACGAATCACCAAAAGCAGTTTGTGCTATCATCGATTTATGTTAATA
CCATTAAACAGAATTGAAACATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAA
AAATAGATTAAAAAAAAAA----------CTTTAAACACAAATACACAATGAATAAATTA
TTATTAGCTTTCCTTTTCTTTGGTTTAATCGCCTCTGTTACTATTTCTATGAAAATTGAT
GTAAGAACACAAAGTGAACCAAATTTAGGAGATATTCCATTATGTTTGATCTGTGACTTT
GCTGTTGGTAAAATTGAAAAATATTTAGATGATAAAGCAAATACAACTGTTATCATTGAC
AAAGTTGAAAAGGATTGTAATATATTAAGAAATAGTTGGATTGGAAAATGTAAAAATATC
GTTACTGAATATGGTCCAAAAATCATTGACCTTTTGGAAAGTAACGAATCACCAAAAGCA
GTTTGTGCTATCATCGATTTATGTTAATACCATTAAACAGAATTGAAACATAAAAATAAA
AATAAAAATAAAAATAAAA
Length of connected seq. 849
Full length Seq ID -
Full length Seq. -
Length of full length seq. -