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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI206
Library VS
(Link to library)
Clone ID VSI206
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13793-1
Original site URL
Representative seq. ID VSI206P
(Link to Original site)
Representative DNA sequence 
>VSI206 (VSI206Q) /CSM/VS/VSI2-A/VSI206Q.Seq.d/
AAATAATGTCAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTCCAG
TTGGTGCTGTCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTGCCG
TCAAAGGTATCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGGTCA
TGGCTACCGTCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTTG
TCAGACAAAGAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAACG
CTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCCA
AGGAATGCTCCGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAATAA
ATACACATAAAGTTAAAACAATATANAAAAAAAAXXXXXXXXXXAAATAATGTCAAAAGC
ACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTCCAGTTGGTGCTGTCATGAA
CAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTGCCGTCAAAGGTATCAAAGG
TCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGGTCATGGCTACCGTCAAAAA
GGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAAGAAAACA
CTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTATGTGTAA
TCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCTCCGATTT
AGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAATAAATACAC
sequence update 2001. 3.22
Translated Amino Acid sequence 
imskaqavgsnyrvslglpvgavmnsadnsgaknlyviavkgikgrlnrlpsagvgdmvm
atvkkgkpelrkkvctglvvrqrkhwkrkdgvyiyfednagvmcnpkgevkgnilgpvak
ecsdlwpkvatnagtiv*INTHKVKTIXKK---

---IMSKAQAVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGD
MVMATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGNILGP
VAKECSDLGQRLPPMPVPLFK*ih
Translated Amino Acid sequence (All Frames) 
Frame A:
k*cqkhkpsvvtteyhsvfqlvls*tvliilvpkiytslpskvskvv*idyhpqvlviws
wlpskrvnqn*erkfalv*lsdkentgrermvftsiskitlvlcviqkvkskvtfsdqsp
rnapiygqrlppmpvplfk*ihiklkqyxkk---

---k*cqkhkpsvvtteyhsvfqlvls*tvliilvpkiytslpskvskvv*idyhpqvlv
iwswlpskrvnqn*erkfalv*lsdkentgrermvftsiskitlvlcviqkvkskvtfsd
qsprnapi*akgchqcryhclnky

Frame B:
nnvkstsrr**lqsitrssswccheqc**fwcqkfirhcrqryqrsfk*itirrcw*ygh
gyrqkg*trikkeslhwfscqtkktleekgwclhlfrr*rwcyv*skr*sqr*hsrtsrq
gmlrfmakgchqcryhclnkyt*s*nnixkk---

---nnvkstsrr**lqsitrssswccheqc**fwcqkfirhcrqryqrsfk*itirrcw*
yghgyrqkg*trikkeslhwfscqtkktleekgwclhlfrr*rwcyv*skr*sqr*hsrt
srqgmlrfrpkvatnagtiv*int

Frame C:
imskaqavgsnyrvslglpvgavmnsadnsgaknlyviavkgikgrlnrlpsagvgdmvm
atvkkgkpelrkkvctglvvrqrkhwkrkdgvyiyfednagvmcnpkgevkgnilgpvak
ecsdlwpkvatnagtiv*INTHKVKTIXKK---

---IMSKAQAVGSNYRVSLGLPVGAVMNSADNSGAKNLYVIAVKGIKGRLNRLPSAGVGD
MVMATVKKGKPELRKKVCTGLVVRQRKHWKRKDGVYIYFEDNAGVMCNPKGEVKGNILGP
VAKECSDLGQRLPPMPVPLFK*ih
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSK191 (VSK191Q) /CSM/VS/VSK1-D/VSK191Q.Seq.d/                        882   0.0
VSJ725 (VSJ725Q) /CSM/VS/VSJ7-B/VSJ725Q.Seq.d/                        882   0.0
VSJ286 (VSJ286Q) /CSM/VS/VSJ2-D/VSJ286Q.Seq.d/                        882   0.0
VSJ211 (VSJ211Q) /CSM/VS/VSJ2-A/VSJ211Q.Seq.d/                        882   0.0
VSJ195 (VSJ195Q) /CSM/VS/VSJ1-D/VSJ195Q.Seq.d/                        882   0.0
VSJ186 (VSJ186Q) /CSM/VS/VSJ1-D/VSJ186Q.Seq.d/                        882   0.0
VSI870 (VSI870Q) /CSM/VS/VSI8-C/VSI870Q.Seq.d/                        882   0.0
VSI206 (VSI206Q) /CSM/VS/VSI2-A/VSI206Q.Seq.d/                        882   0.0
VSI106 (VSI106Q) /CSM/VS/VSI1-A/VSI106Q.Seq.d/                        882   0.0
VSH682 (VSH682Q) /CSM/VS/VSH6-D/VSH682Q.Seq.d/                        882   0.0
own update 2001.11.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU270782) Dictyostelium discoideum vegetative cDNA clone:VS...   882   0.0    1
(AU270371) Dictyostelium discoideum vegetative cDNA clone:VS...   882   0.0    1
(AU269700) Dictyostelium discoideum vegetative cDNA clone:VS...   882   0.0    1
(AU269576) Dictyostelium discoideum vegetative cDNA clone:VS...   882   0.0    1
(AU269558) Dictyostelium discoideum vegetative cDNA clone:VS...   882   0.0    1
(AU269540) Dictyostelium discoideum vegetative cDNA clone:VS...   882   0.0    1
(AU269371) Dictyostelium discoideum vegetative cDNA clone:VS...   882   0.0    1
(AU268316) Dictyostelium discoideum vegetative cDNA clone:VS...   882   0.0    1
(AU268155) Dictyostelium discoideum vegetative cDNA clone:VS...   882   0.0    1
(AU267820) Dictyostelium discoideum vegetative cDNA clone:VS...   882   0.0    1
dna update 2009. 7. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6PC14) RecName: Full=60S ribosomal protein L23;  &AY684289_1(A...   206   8e-52
AK012694_1(AK012694|pid:none) Mus musculus 10, 11 days embryo wh...   206   1e-51
BC102556_1(BC102556|pid:none) Bos taurus ribosomal protein L23, ...   205   1e-51
BT058333_1(BT058333|pid:none) Salmo salar clone Contig3997 60S r...   205   2e-51
EU042114_1(EU042114|pid:none) Epinephelus coioides ribosomal pro...   205   2e-51
BC003518_1(BC003518|pid:none) Homo sapiens, Similar to ribosomal...   205   2e-51
BC073541_1(BC073541|pid:none) Xenopus laevis MGC82808 protein, m...   203   5e-51
CP000498_170(CP000498|pid:none) Pichia stipitis CBS 6054 chromos...   203   5e-51
(Q5REU2) RecName: Full=60S ribosomal protein L23;  &CR857424_1(C...   203   5e-51
CR382130_420(CR382130|pid:none) Yarrowia lipolytica strain CLIB1...   203   5e-51
protein update 2009. 3.24
PSORT 

 psg: 0.64  gvh: 0.37  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.11
 nuc: 0.17  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VSI206 is nuc
5' end seq. ID VSI206F
5' end seq. 
>VSI206F.Seq
AAATAATGTCAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTCCAG
TTGGTGCTGTCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTGCCG
TCAAAGGTATCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGGTCA
TGGCTACCGTCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTTG
TCAGACAAAGAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAACG
CTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCCA
AGGAATGCTCCGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAATAA
ATACACATAAAGTTAAAACAATATANAAAAAAAA----------
Length of 5' end seq. 454
3' end seq. ID VSI206Z
3' end seq. 
>VSI206Z.Seq
----------AAATAATGTCAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTC
GGTCTTCCAGTTGGTGCTGTCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATAC
GTCATTGCCGTCAAAGGTATCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGT
GATATGGTCATGGCTACCGTCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACT
GGTTTAGTTGTCAGACAAAGAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTC
GAAGATAACGCTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGA
CCAGTCGCCAAGGAATGCTCCGATTTAGGCCAAAGGTTGCCACCAATGCCGGTACCATTG
TTTAAATAAATACAC
Length of 3' end seq. 425
Connected seq. ID VSI206P
Connected seq. 
>VSI206P.Seq
AAATAATGTCAAAAGCACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTCCAG
TTGGTGCTGTCATGAACAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTGCCG
TCAAAGGTATCAAAGGTCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGGTCA
TGGCTACCGTCAAAAAGGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTTG
TCAGACAAAGAAAACACTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAACG
CTGGTGTTATGTGTAATCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCCA
AGGAATGCTCCGATTTATGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAATAA
ATACACATAAAGTTAAAACAATATANAAAAAAAA----------AAATAATGTCAAAAGC
ACAAGCCGTCGGTAGTAACTACAGAGTATCACTCGGTCTTCCAGTTGGTGCTGTCATGAA
CAGTGCTGATAATTCTGGTGCCAAAAATTTATACGTCATTGCCGTCAAAGGTATCAAAGG
TCGTTTAAATAGATTACCATCCGCAGGTGTTGGTGATATGGTCATGGCTACCGTCAAAAA
GGGTAAACCAGAATTAAGAAAGAAAGTTTGCACTGGTTTAGTTGTCAGACAAAGAAAACA
CTGGAAGAGAAAGGATGGTGTTTACATCTATTTCGAAGATAACGCTGGTGTTATGTGTAA
TCCAAAAGGTGAAGTCAAAGGTAACATTCTCGGACCAGTCGCCAAGGAATGCTCCGATTT
AGGCCAAAGGTTGCCACCAATGCCGGTACCATTGTTTAAATAAATACAC
Length of connected seq. 879
Full length Seq ID -
Full length Seq. -
Length of full length seq. -