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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSI381
Library VS
(Link to library)
Clone ID VSI381
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03301-1
Original site URL
Representative seq. ID VSI381P
(Link to Original site)
Representative DNA sequence 
>VSI381 (VSI381Q) /CSM/VS/VSI3-D/VSI381Q.Seq.d/
AAATATTTTTGTAACTAAATATATACAAATAAAATAAAATAAAATGATATTTAAAAAAAC
AATTTTAATTTTTATAATTTCATTTTTTTTTATATCAATTTCATTTGCAAGTTCATCATC
ATCATCGTCTTCATCATCATCATCGTCTTCGTCATCATGGTCTTCATCCGAAAGTTCATC
CTCACCTGCACCTTCAAAATATATTTATGCAATTGCAGTTATTGAAAATTATAAACAACA
ACAATTTTTGATTATTGATCCTTGGGAAAATAATACAATTTTAAGTGAATCTTTACAACT
TAATTTCGAAATTGATGATATTTTAATTGTTGAAGAATCAAATACTTTTATTGTTTATTC
TGAAAGTACAAATCAATCATTGATTTCAATTAACCCAAATACATTACAATCAAAATTAAT
TAATAAAATAACACCACCAATAGCAGGATTTGAAGATATGCTTCAACCAAGTGTATTTAT
TATTGAAAAAAAGGGATTGTATAAACCAGTGGTAGATATTAATGGXXXXXXXXXXTATTG
AAAAAAAGGTATTGTATAAACCCAGTGGTAGATATTAATGGTGGTGGTGAACCTTAGTAG
TTTATTACGTTTAGATTTTGAAAGTGGTAAAAGGTACATTTGTAAATATATCAAAATGAA
AATCAAATTTCAACCGCTGGTAGTATACCAAAATGTTGCATATGATCAATTGAATGATTA
CGTATTCGCATGTTATAATTCATCAAATAATAATGTTTTAGTGGCATTTAATGAAACTAC
TTCTGACATTATTGAAACTTATGGTATTCTTAAAAATATTCAAGGTTTTGATGTTACAAT
GATGTTCACTGATAAATTGGGTAATCTATTCTTAGTATATCAAGATAATAGTGGTGATGT
CTTTGTATGTGAAGTAGATTCTATATTAATGGAATGTTTTGGTGTATTCAAATATAATAT
TGGTACTGTTCCTTATGCTTTCTCTCCTTACTTTTTATCAAGAGATAAATCCTCTTTGGT
TTTTATTACTTATATCGATGAAAATCAATTCTTATTGGAGGTGGTAGATTTTAATCATGG
TTTCAAATCAAAGAAAACAATTTTTTCAAATAGTTATTTAAATAANCCATTTAATGTTT
sequence update 2001. 3.22
Translated Amino Acid sequence 
nifvtkyiqik*NKMIFKKTILIFIISFFFISISFASSSSSSSSSSSSSSSSWSSSESSS
SPAPSKYIYAIAVIENYKQQQFLIIDPWENNTILSESLQLNFEIDDILIVEESNTFIVYS
ESTNQSLISINPNTLQSKLINKITPPIAGFEDMLQPSVFIIEKKGLYKPVVDIN---

---LKKRYCINPVVDINGGGEP**fitfrf*kw*kvhl*iyqnenqistagsipkcci*s
ie*lrirml*fik**cfsgi**nyf*hy*nlwys*kysrf*cyndvh**ig*silsisr*
*w*clcm*srfyingmfwciqi*ywycslcflsllfikr*ilfgfyylyr*ksiligggr
f*swfqikennffk*lfk*xi*c
Translated Amino Acid sequence (All Frames) 
Frame A:
kyfcn*iytnkik*ndi*knnfnfynfiffyinfickfiiiivfiiiivfvimvfirkfi
ltctfkiylcncsy*kl*tttifdy*slgk*ynfk*iftt*frn**yfnc*rikyfyclf
*kyksiidfn*pkyitikin**nnttnsri*ryastkciyy*kkgiv*tsgry*w---

---y*kkgiv*tqw*ilmvvvnlssllrldfesgkryickyikmkikfqplvvyqnvayd
qlndyvfacynssnnnvlvafnettsdiietygilkniqgfdvtmmftdklgnlflvyqd
nsgdvfvcevdsilmecfgvfkynigtvpyafspyflsrdksslvfityidenqfllevv
dfnhgfkskktifsnsylnxpfnv

Frame B:
nifvtkyiqik*NKMIFKKTILIFIISFFFISISFASSSSSSSSSSSSSSSSWSSSESSS
SPAPSKYIYAIAVIENYKQQQFLIIDPWENNTILSESLQLNFEIDDILIVEESNTFIVYS
ESTNQSLISINPNTLQSKLINKITPPIAGFEDMLQPSVFIIEKKGLYKPVVDIN---

---iekkvlykpsgry*www*tlvvyyv*ilkvvkgtfvnisk*ksnfnrw*ytkmlhmi
n*mityshviihqiimf*whlmkllltllklmvflkifkvlmlq*cslinwviys*yiki
ivvmslyvk*ily*wnvlvysniilvlflmlslltfyqeinplwflllismkinsywrw*
ilimvsnqrkqffqivi*ixhlmf

Frame C:
ifl*lniyk*nkik*ylkkqf*fl*fhfflyqfhlqvhhhhrlhhhhrlrhhglhpkvhp
hlhlqnifmqlqllkiinnnnf*llilgkiiqf*vnlynlisklmif*llknqilllfil
kvqinh*fqltqihynqn*lik*hhq*qdlkicfnqvylllkkrdcinqw*ilm---

---LKKRYCINPVVDINGGGEP**fitfrf*kw*kvhl*iyqnenqistagsipkcci*s
ie*lrirml*fik**cfsgi**nyf*hy*nlwys*kysrf*cyndvh**ig*silsisr*
*w*clcm*srfyingmfwciqi*ywycslcflsllfikr*ilfgfyylyr*ksiligggr
f*swfqikennffk*lfk*xi*c
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSI381 (VSI381Q) /CSM/VS/VSI3-D/VSI381Q.Seq.d/                       1168   0.0
VFF863 (VFF863Q) /CSM/VF/VFF8-C/VFF863Q.Seq.d/                       1078   0.0
VSI151 (VSI151Q) /CSM/VS/VSI1-C/VSI151Q.Seq.d/                       1072   0.0
SSE392 (SSE392Q) /CSM/SS/SSE3-D/SSE392Q.Seq.d/                       1065   0.0
SSG686 (SSG686Q) /CSM/SS/SSG6-D/SSG686Q.Seq.d/                       1007   0.0
FC-IC0099 (FC-IC0099Q) /CSM/FC-IC/FC-IC0099Q.Seq.d/                   620   e-176
VSC742 (VSC742Q) /CSM/VS/VSC7-B/VSC742Q.Seq.d/                         40   0.073
SSH670 (SSH670Q) /CSM/SS/SSH6-C/SSH670Q.Seq.d/                         40   0.073
AFG252 (AFG252Q) /CSM/AF/AFG2-C/AFG252Q.Seq.d/                         40   0.073
CHO844 (CHO844Q) /CSM/modify/removed090331/CHO844Q.Seq.d/              38   0.29
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU268608) Dictyostelium discoideum vegetative cDNA clone:VS...  1168   0.0    1
(BJ428639) Dictyostelium discoideum cDNA clone:ddv12n16, 3' ...   874   0.0    7
(AU268230) Dictyostelium discoideum vegetative cDNA clone:VS...   868   0.0    7
(AU037872) Dictyostelium discoideum slug cDNA, clone SSE392.      884   0.0    5
(BJ410475) Dictyostelium discoideum cDNA clone:ddv12n16, 5' ...   591   0.0    5
(AU268607) Dictyostelium discoideum vegetative cDNA clone:VS...   597   0.0    3
(AU268229) Dictyostelium discoideum vegetative cDNA clone:VS...   597   e-176  2
(AU271343) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   543   e-173  3
(AU073328) Dictyostelium discoideum slug cDNA, clone SSG686.       94   3e-93  7
(AU072388) Dictyostelium discoideum slug cDNA, clone SSE392.      119   1e-27  2
dna update 2009. 7.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117176_2(AC117176|pid:none) Dictyostelium discoideum chromosom...    58   5e-07
CR382139_356(CR382139|pid:none) Debaryomyces hansenii strain CBS...    38   0.71
CP000492_2251(CP000492|pid:none) Chlorobium phaeobacteroides DSM...    35   3.5
CP000409_286(CP000409|pid:none) Rickettsia canadensis str. McKie...    35   3.5
D38155_1(D38155|pid:none) Equine rotavirus RNA 5 for NSP1, compl...    35   3.5
AP006861_626(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,...    35   3.5
D38156_1(D38156|pid:none) Equine rotavirus RNA 5 for NSP1, compl...    35   4.6
CP000499_225(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    34   7.8
protein update 2009. 3.24
PSORT 

 psg: 1.01  gvh: 0.63  alm: 0.20  top: 0.27  tms: 0.07  mit: 0.65  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 20.0 %: endoplasmic reticulum
	 16.0 %: Golgi
	 12.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for VSI381 is mit
5' end seq. ID VSI381F
5' end seq. 
>VSI381F.Seq
AAATATTTTTGTAACTAAATATATACAAATAAAATAAAATAAAATGATATTTAAAAAAAC
AATTTTAATTTTTATAATTTCATTTTTTTTTATATCAATTTCATTTGCAAGTTCATCATC
ATCATCGTCTTCATCATCATCATCGTCTTCGTCATCATGGTCTTCATCCGAAAGTTCATC
CTCACCTGCACCTTCAAAATATATTTATGCAATTGCAGTTATTGAAAATTATAAACAACA
ACAATTTTTGATTATTGATCCTTGGGAAAATAATACAATTTTAAGTGAATCTTTACAACT
TAATTTCGAAATTGATGATATTTTAATTGTTGAAGAATCAAATACTTTTATTGTTTATTC
TGAAAGTACAAATCAATCATTGATTTCAATTAACCCAAATACATTACAATCAAAATTAAT
TAATAAAATAACACCACCAATAGCAGGATTTGAAGATATGCTTCAACCAAGTGTATTTAT
TATTGAAAAAAAGGGATTGTATAAACCAGTGGTAGATATTAATGG----------
Length of 5' end seq. 525
3' end seq. ID VSI381Z
3' end seq. 
>VSI381Z.Seq
----------TATTGAAAAAAAGGTATTGTATAAACCCAGTGGTAGATATTAATGGTGGT
GGTGAACCTTAGTAGTTTATTACGTTTAGATTTTGAAAGTGGTAAAAGGTACATTTGTAA
ATATATCAAAATGAAAATCAAATTTCAACCGCTGGTAGTATACCAAAATGTTGCATATGA
TCAATTGAATGATTACGTATTCGCATGTTATAATTCATCAAATAATAATGTTTTAGTGGC
ATTTAATGAAACTACTTCTGACATTATTGAAACTTATGGTATTCTTAAAAATATTCAAGG
TTTTGATGTTACAATGATGTTCACTGATAAATTGGGTAATCTATTCTTAGTATATCAAGA
TAATAGTGGTGATGTCTTTGTATGTGAAGTAGATTCTATATTAATGGAATGTTTTGGTGT
ATTCAAATATAATATTGGTACTGTTCCTTATGCTTTCTCTCCTTACTTTTTATCAAGAGA
TAAATCCTCTTTGGTTTTTATTACTTATATCGATGAAAATCAATTCTTATTGGAGGTGGT
AGATTTTAATCATGGTTTCAAATCAAAGAAAACAATTTTTTCAAATAGTTATTTAAATAA
NCCATTTAATGTTT
Length of 3' end seq. 604
Connected seq. ID VSI381P
Connected seq. 
>VSI381P.Seq
AAATATTTTTGTAACTAAATATATACAAATAAAATAAAATAAAATGATATTTAAAAAAAC
AATTTTAATTTTTATAATTTCATTTTTTTTTATATCAATTTCATTTGCAAGTTCATCATC
ATCATCGTCTTCATCATCATCATCGTCTTCGTCATCATGGTCTTCATCCGAAAGTTCATC
CTCACCTGCACCTTCAAAATATATTTATGCAATTGCAGTTATTGAAAATTATAAACAACA
ACAATTTTTGATTATTGATCCTTGGGAAAATAATACAATTTTAAGTGAATCTTTACAACT
TAATTTCGAAATTGATGATATTTTAATTGTTGAAGAATCAAATACTTTTATTGTTTATTC
TGAAAGTACAAATCAATCATTGATTTCAATTAACCCAAATACATTACAATCAAAATTAAT
TAATAAAATAACACCACCAATAGCAGGATTTGAAGATATGCTTCAACCAAGTGTATTTAT
TATTGAAAAAAAGGGATTGTATAAACCAGTGGTAGATATTAATGG----------TATTG
AAAAAAAGGTATTGTATAAACCCAGTGGTAGATATTAATGGTGGTGGTGAACCTTAGTAG
TTTATTACGTTTAGATTTTGAAAGTGGTAAAAGGTACATTTGTAAATATATCAAAATGAA
AATCAAATTTCAACCGCTGGTAGTATACCAAAATGTTGCATATGATCAATTGAATGATTA
CGTATTCGCATGTTATAATTCATCAAATAATAATGTTTTAGTGGCATTTAATGAAACTAC
TTCTGACATTATTGAAACTTATGGTATTCTTAAAAATATTCAAGGTTTTGATGTTACAAT
GATGTTCACTGATAAATTGGGTAATCTATTCTTAGTATATCAAGATAATAGTGGTGATGT
CTTTGTATGTGAAGTAGATTCTATATTAATGGAATGTTTTGGTGTATTCAAATATAATAT
TGGTACTGTTCCTTATGCTTTCTCTCCTTACTTTTTATCAAGAGATAAATCCTCTTTGGT
TTTTATTACTTATATCGATGAAAATCAATTCTTATTGGAGGTGGTAGATTTTAATCATGG
TTTCAAATCAAAGAAAACAATTTTTTCAAATAGTTATTTAAATAANCCATTTAATGTTT
Length of connected seq. 1129
Full length Seq ID -
Full length Seq. -
Length of full length seq. -