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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHA771
Library AH
(Link to library)
Clone ID AHA771
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11159-1
Original site URL
Representative seq. ID AHA771P
(Link to Original site)
Representative DNA sequence 
>AHA771 (AHA771Q) /CSM/AH/AHA7-C/AHA771Q.Seq.d/
ATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATG
TAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTG
GAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTG
ATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATG
AAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGA
TGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTT
TATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTC
AAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTG
CTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTT
TACAATATGGTTGTAAAATGGTAAGCXXXXXXXXXXGGNGCCCNTNNACCNAAANTTAAA
NGNCCCAAAAANTTTTAANCNAAAAAAANNGGTGGTANNANTGGGGGNTTTNAAAAAAAC
NAAACCCAATGGCCTTTNNTNAAAGAATTTTTTTTTTTTTNNAAAAAAAAAATAATA
sequence update 2002.10.25
Translated Amino Acid sequence 
yfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGD
VVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTL
LGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCL
QYGCKMVS---

---XPXXXXLXXPKXFXXKKXVVXXGXXKKTKPNGLXXKNFFFFXKKK*
Translated Amino Acid sequence (All Frames) 
Frame A:
iilfykl*rk*enf*kmimm**fvvvvqlvwllhtdvpklerkyfvsknqyslmevvvvv
mllecyvqctlkiiwpi*hmkpldsgknlvmmlvkvi*fg*qvs*ilviqimvqvvqkvl
y*dqfqi*rdwvcntkc*llkklwksihletfhpitkvfllqtmvlsiyhwyyvlftsyv
ynmvvkw*---

---gaxxpkxkxpkxf*xkkxggxxggfxknxtqwpxxkeffffxkkkii

Frame B:
lfyfisfeenerifkr*l*cnslwwwsswfgyciqmcqswkestlsrkisil*wrw**w*
cc*nvtynvh*rlygrfst*npwtlertw**cw*r*fslddrspkfw*sklwcrwsrryf
irtnskfreigyaiqsvncsrnygrvsi*khsiqsprcfcsrqwcyqftigitfslqvmf
tiwl*ngk---

---XPXXXXLXXPKXFXXKKXVVXXGXXKKTKPNGLXXKNFFFFXKKK*

Frame C:
yfil*ALKKMREFLKDDYDVIVCGGGPVGLATAYRCAKAGKKVLCLEKSVFFNGGGSSGD
VVRMLRTMYTEDYMADLAHETLGLWKELGDDAGEGDLVWMTGLLNFGDPNYGAGGPEGTL
LGPIPNLERLGMQYKVLTAQEIMEEYPFRNIPSNHQGVFAPDNGVINLPLVLRSLYKLCL
QYGCKMVS---

---xpxtxx*xxqkxlxxkxxwxxwgxxkkxnpmafxxrifffxxkknn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ418 (VHQ418Q) /CSM/VH/VHQ4-A/VHQ418Q.Seq.d/                       1122   0.0
VHP706 (VHP706Q) /CSM/VH/VHP7-A/VHP706Q.Seq.d/                       1122   0.0
VHM609 (VHM609Q) /CSM/VH/VHM6-A/VHM609Q.Seq.d/                       1122   0.0
VHM587 (VHM587Q) /CSM/VH/VHM5-D/VHM587Q.Seq.d/                       1122   0.0
VHL890 (VHL890Q) /CSM/VH/VHL8-D/VHL890Q.Seq.d/                       1122   0.0
VHL117 (VHL117Q) /CSM/VH/VHL1-A/VHL117Q.Seq.d/                       1122   0.0
VHK762 (VHK762Q) /CSM/VH/VHK7-C/VHK762Q.Seq.d/                       1122   0.0
VHK414 (VHK414Q) /CSM/VH/VHK4-A/VHK414Q.Seq.d/                       1122   0.0
VHJ864 (VHJ864Q) /CSM/VH/VHJ8-C/VHJ864Q.Seq.d/                       1122   0.0
VHI858 (VHI858Q) /CSM/VH/VHI8-C/VHI858Q.Seq.d/                       1122   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    32   0.002  11
AC009635|AC009635.5 Homo sapiens chromosome 8, clone RP11-21J9, complete sequence.    40   0.003  4
AC009598|AC009598.3 Homo sapiens chromosome 8 clone RP11-223O12 map 8, WORKING DRAFT SEQUENCE, 9 unordered pieces.    40   0.010  4
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    32   0.017  9
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   0.022  13
CQ344998|CQ344998.1 Sequence 19092 from Patent WO0157275.          38   0.092  2
CQ308193|CQ308193.1 Sequence 19298 from Patent WO0186003.          38   0.092  2
CQ270885|CQ270885.1 Sequence 19146 from Patent WO0157277.          38   0.092  2
CQ232880|CQ232880.1 Sequence 19719 from Patent WO0157273.          38   0.092  2
CQ184373|CQ184373.1 Sequence 15769 from Patent WO0157274.          38   0.092  2
dna update 2004. 2.24
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_413(CU638744|pid:none) Podospora anserina genomic DNA c...   204   3e-51
Y18574_4(Y18574|pid:none) Streptomyces tendae strain Tue901, nik...   109   7e-23
AM286415_1545(AM286415|pid:none) Yersinia enterocolitica subsp. ...    80   8e-14
CP001291_5186(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    78   3e-13
(Q29RU9) RecName: Full=Peroxisomal sarcosine oxidase;          S...    77   5e-13
AY892312_1(AY892312|pid:none) Synthetic construct Homo sapiens c...    76   9e-13
CR457155_1(CR457155|pid:none) Homo sapiens full open reading fra...    76   9e-13
AF134593_1(AF134593|pid:none) Homo sapiens L-pipecolic acid oxid...    76   9e-13
AX882278_1(AX882278|pid:none) Sequence 17183 from Patent EP10746...    76   9e-13
BC114006_1(BC114006|pid:none) Bos taurus L-pipecolic acid oxidas...    76   1e-12
protein update 2009. 4.27
PSORT 

 psg: 0.67  gvh: 0.49  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for AHA771 is cyt
5' end seq. ID AHA771F
5' end seq. 
>AHA771F.Seq
ATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATG
TAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTG
GAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTG
ATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATG
AAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGA
TGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTT
TATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTC
AAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTG
CTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTT
TACAATATGGTTGTAAAATGGTAAGCNNNNNNNNNN
Length of 5' end seq. 576
3' end seq. ID AHA771Z
3' end seq. 
>AHA771Z.Seq
NNNNNNNNNNGGNGCCCNTNNACCNAAANTTAAANGNCCCAAAAANTTTTAANCNAAAAA
AANNGGTGGTANNANTGGGGGNTTTNAAAAAAACNAAACCCAATGGCCTTTNNTNAAAGA
ATTTTTTTTTTTTTNNAAAAAAAAAATAATA
Length of 3' end seq. 151
Connected seq. ID AHA771P
Connected seq. 
>AHA771P.Seq
ATTATTTTATTTTATAAGCTTTGAAGAAAATGAGAGAATTTTTAAAAGATGATTATGATG
TAATAGTTTGTGGTGGTGGTCCAGTTGGTTTGGCTACTGCATACAGATGTGCCAAAGCTG
GAAAGAAAGTACTTTGTCTCGAAAAATCAGTATTCTTTAATGGAGGTGGTAGTAGTGGTG
ATGTTGTTAGAATGTTACGTACAATGTACACTGAAGATTATATGGCCGATTTAGCACATG
AAACCCTTGGACTCTGGAAAGAACTTGGTGATGATGCTGGTGAAGGTGATTTAGTTTGGA
TGACAGGTCTCCTAAATTTTGGTGATCCAAATTATGGTGCAGGTGGTCCAGAAGGTACTT
TATTAGGACCAATTCCAAATTTAGAGAGATTGGGTATGCAATACAAAGTGTTAACTGCTC
AAGAAATTATGGAAGAGTATCCATTTAGAAACATTCCATCCAATCACCAAGGTGTTTTTG
CTCCAGACAATGGTGTTATCAATTTACCATTGGTATTACGTTCTCTTTACAAGTTATGTT
TACAATATGGTTGTAAAATGGTAAGC----------GGNGCCCNTNNACCNAAANTTAAA
NGNCCCAAAAANTTTTAANCNAAAAAAANNGGTGGTANNANTGGGGGNTTTNAAAAAAAC
NAAACCCAATGGCCTTTNNTNAAAGAATTTTTTTTTTTTTNNAAAAAAAAAATAATA
Length of connected seq. 707
Full length Seq ID -
Full length Seq. -
Length of full length seq. -