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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VSJ669
Library VS
(Link to library)
Clone ID VSJ669
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15177-1
Original site URL
Representative seq. ID VSJ669E
(Link to Original site)
Representative DNA sequence 
>VSJ669 (VSJ669Q) /CSM/VS/VSJ6-C/VSJ669Q.Seq.d/
ATCTTTTAAAATAAATTATATATATTTATATTTTATTATTAATAAATATGGAAAAAGAAC
AAGTTTGGTATATTACAGGTTGTACAAGTGGATGTGGATTAGCATTGGTTGAGAAATTAT
TAAAGATTAAGGGTACAAAAGTTGCAGGAACAACAAGGGATTTAAAAAAGATTGAACAAT
TATCAATTTATAAGGATCAAAATTTTTTAGCATTACAAGTTGACTTGGTAAATAGTAAAT
CAGTTGAAGAATCAATTGAAAAAACAATTAAACATTTTGGAAGTATTACTCATGTTGTAA
ATAATGCAGGCTTTGCTTTAATGGGTACTGTTGAAGAGGCAAGTGATAAAGAGCAAAGAG
AGCAAATGGACGTTTGCTATTTCGCTCCATTAAATGTAATTAGATCAGTGTTACCACACT
TTCGTTCAAAATCACATGGTTATATCTTTAATATTGGCTCTGGTGCTGGGTTTAGAGGTA
TAGCTAATTTGGGTGCTTATTCCGGTTCAAAATTCGCAATCACTGGTATTACCGAGGCAT
TACATGAAGAGGTTAAACAATTCTCTATTAATGTATCAACTATTGTTTTAGGCTATATTG
AAACAGATTTCCATGAAGCAATTCCAGTGGCTAAAAATTTAATTGATTGTTATTCTACCC
AAGCTTTTAGTGAACAGCGTAAAGAAAATTTAAAGAAAATTATTGGTGGTGATCCACAAA
AAGTTGCTGATGTTTTAATTGATTATTCATACAAATCAAATTTACCTTTTAATATTTTCG
TTGGTCCAACTAATCATTTCAATAATATTGAAACAAGAGCTAAAGAATTATTAAATCAAA
TTCAATTACAAAGAGAAAAAAATAATGTTCAAAAATCTTAATTATTAAAAAATAATAAAT
AAATAAAAAAAAATAAAAAAATAAAAAAAAATAATAATAATAAAAT
sequence update 2001. 3.26
Translated Amino Acid sequence 
llk*IIYIYILLLINMEKEQVWYITGCTSGCGLALVEKLLKIKGTKVAGTTRDLKKIEQL
SIYKDQNFLALQVDLVNSKSVEESIEKTIKHFGSITHVVNNAGFALMGTVEEASDKEQRE
QMDVCYFAPLNVIRSVLPHFRSKSHGYIFNIGSGAGFRGIANLGAYSGSKFAITGITEAL
HEEVKQFSINVSTIVLGYIETDFHEAIPVAKNLIDCYSTQAFSEQRKENLKKIIGGDPQK
VADVLIDYSYKSNLPFNIFVGPTNHFNNIETRAKELLNQIQLQREKNNVQKS*llknnk*
ikknkkikknnnnk
Translated Amino Acid sequence (All Frames) 
Frame A:
if*nklyififyy**iwkknkfgilqvvqvdvd*hwlrny*rlrvqklqeqqgi*krlnn
yqfirikif*hykltw*ivnqlknqlkkqlnilevllml*imqall*wvllkrqvikske
skwtfaislh*m*ldqcyhtfvqnhmvislilalvlglev*liwvlipvqnsqslvlprh
ymkrlnnsllmyqllf*ailkqismkqfqwlki*livilpkllvnsvkki*rkllvvihk
kllmf*liihtnqiyllifslvqliisiilkqelkny*ikfnykekkimfknlny*kiin
k*kkikk*kkiiiik


Frame B:
sfkinyiylyfiinkygkrtslvyyrlykwmwisig*eiikd*gykscrnnkgfkkd*ti
inl*gskffsits*lgk**is*rin*knn*tfwkyyscck*crlcfngyc*rgk**rakr
angrllfrsikcn*isvttlsfkitwlyl*ywlwcwv*rys*fgclfrfkirnhwyyrgi
t*rg*tily*cinycfrly*nrfp*snssg*kfn*llfypsf**ta*rkfkenyww*stk
sc*cfn*lfiqikftf*yfrwsn*sfq*y*nks*riiksnsitkrkk*cskiliikk**i
nkkk*knkkk****n


Frame C:
llk*IIYIYILLLINMEKEQVWYITGCTSGCGLALVEKLLKIKGTKVAGTTRDLKKIEQL
SIYKDQNFLALQVDLVNSKSVEESIEKTIKHFGSITHVVNNAGFALMGTVEEASDKEQRE
QMDVCYFAPLNVIRSVLPHFRSKSHGYIFNIGSGAGFRGIANLGAYSGSKFAITGITEAL
HEEVKQFSINVSTIVLGYIETDFHEAIPVAKNLIDCYSTQAFSEQRKENLKKIIGGDPQK
VADVLIDYSYKSNLPFNIFVGPTNHFNNIETRAKELLNQIQLQREKNNVQKS*llknnk*
ikknkkikknnnnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ669 (VSJ669Q) /CSM/VS/VSJ6-C/VSJ669Q.Seq.d/                       1552   0.0
FC-BD22 (FC-BD22Q) /CSM/FC/FC-BD/FC-BD22Q.Seq.d/                     1538   0.0
FC-BD20 (FC-BD20Q) /CSM/FC/FC-BD/FC-BD20Q.Seq.d/                     1538   0.0
FC-418 (FC-418Q) /CSM/CG/CG-FC/FC-418Q.Seq.d/                        1538   0.0
SSG692 (SSG692Q) /CSM/SS/SSG6-D/SSG692Q.Seq.d/                       1479   0.0
SSK453 (SSK453Q) /CSM/SS/SSK4-C/SSK453Q.Seq.d/                       1126   0.0
VSI465 (VSI465Q) /CSM/VS/VSI4-C/VSI465Q.Seq.d/                         70   7e-11
VSI280 (VSI280Q) /CSM/VS/VSI2-D/VSI280Q.Seq.d/                         70   7e-11
VHH578 (VHH578Q) /CSM/VH/VHH5-D/VHH578Q.Seq.d/                         70   7e-11
VFH563 (VFH563Q) /CSM/VF/VFH5-C/VFH563Q.Seq.d/                         70   7e-11
own update 2003. 1.10
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AP001392|AP001392.3 Homo sapiens genomic DNA, chromosome 18q22 clone:RP11-721O22, WORKING DRAFT SEQUENCE, 9 unordered pieces.    36  0.22  6
AC015462|AC015462.6 Homo sapiens clone RP11-114I8, WORKING DRAFT SEQUENCE, 12 unordered pieces.    46  0.78  1
AQ739569|AQ739569.1 HS_5381_B2_E10_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=957 Col=20 Row=J, genomic survey sequence.    46  0.78  1
AC023782|AC023782.2 Homo sapiens chromosome 3 clone RP11-320C17 map 3, WORKING DRAFT SEQUENCE, 51 unordered pieces.    46  0.78  1
AQ388735|AQ388735.1 RPCI11-153N1.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-153N1, genomic survey sequence.    46  0.78  1
AB059537|AB059537.1 Graphium tamerlanam mitochondrial ND5 gene for NADH dehydrogenase 5, partial cds, sample:Gansu, China,D36.    36  1.2  2
AB059534|AB059534.1 Graphium glycerion mitochondrial ND5 gene for NADH dehydrogenase 5, partial cds, sample:Mt. Victoria, Chin, Myanmar2,@109.    36  1.2  2
AB059535|AB059535.1 Graphium incerta mitochondrial ND5 gene for NADH dehydrogenase 5, partial cds, sample:Yunnan, China,D29.    36  1.2  2
AB059533|AB059533.1 Graphium glycerion mitochondrial ND5 gene for NADH dehydrogenase 5, partial cds, sample:Mt. Victoria, Chin, Myanmar1,@93.    36  1.2  2
AB059526|AB059526.1 Graphium sarpedon mitochondrial ND5 gene for NADH dehydrogenase 5, partial cds, sample:Laos,@103.    36  1.2  2
dna update 2003. 7.21
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000685_1834(CP000685|pid:none) Flavobacterium johnsoniae UW101...   179   1e-43
AC116960_60(AC116960|pid:none) Dictyostelium discoideum chromoso...   171   2e-41
CP000284_588(CP000284|pid:none) Methylobacillus flagellatus KT, ...   163   8e-39
CP001026_795(CP001026|pid:none) Burkholderia ambifaria MC40-6 ch...   162   1e-38
AP009387_68(AP009387|pid:none) Burkholderia multivorans ATCC 176...   148   3e-34
CP000480_1581(CP000480|pid:none) Mycobacterium smegmatis str. MC...   142   2e-32
CP000629_710(CP000629|pid:none) Agrobacterium radiobacter K84 ch...   140   6e-32
FJ196388_4(FJ196388|pid:none) Escherichia coli strain P528.10.99...   138   2e-31
CP000960_881(CP000960|pid:none) Burkholderia cenocepacia MC0-3 c...   137   6e-31
AM420293_6874(AM420293|pid:none) Saccharopolyspora erythraea NRR...   136   8e-31
protein update 2009. 3.25
PSORT 

 psg: 0.93  gvh: 0.45  alm: 0.42  top: 0.40  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for VSJ669 is cyt
5' end seq. ID VSJ669F
5' end seq. 
>VSJ669F.Seq
ATCTTTTAAAATAAATTATATATATTTATATTTTATTATTAATAAATATGGAAAAAGAAC
AAGTTTGGTATATTACAGGTTGTACAAGTGGATGTGGATTAGCATTGGTTGAGAAATTAT
TAAAGATTAAGGGTACAAAAGTTGCAGGAACAACAAGGGATTTAAAAAAGATTGAACAAT
TATCAATTTATAAGGATCAAAATTTTTTAGCATTACAAGTTGACTTGGTAAATAGTAAAT
CAGTTGAAGAATCAATTGAAAAAACAATTAAACATTTTGGAAGTATTACTCATGTTGTAA
ATAATGCAGGCTTTGCTTTAATGGGTACTGTTGAAGAGGCAAGTGATAAAGAGCAAAGAG
AGCAAATGGACGTTTGCTATTTCGCTCCATTAAATGTAATTAGATCAGTGTTACCACACT
TTCGTTCAAAATCACATGGTTATATCTTTAATATTGGCTCTGGTGCTGGGTTTAGAGGTA
TAGCTAATTTGGGTGCTTATTCCGGTTCAAAATTCGCAATCACTGGTA----------
Length of 5' end seq. 528
3' end seq. ID VSJ669Z
3' end seq. 
>VSJ669Z.Seq
----------AGGCTTTGCTTTAATGGGTACTGTTGAANAGGCAAGTGATAAAGAGCAAA
GAGAGCAAATGGACGTTTGCTATTTCGCTCCATTAAATGTAATTAGATCAGTGTTACCAC
ACTTTCGTTCAAAATCACATGGTTATATCTTTAATATTGGCTCTGGTGCTGGGTTTANAG
GTATAGCTAATTTGGGTGCTTATTCCGGTTCAAAATTCGCAATCACTGGTATTACCGAGG
CATTACATGAAGAGGTTAAACAATTCTCTATTAATGTATCAACTATTGTTTTAGGCTATA
TTGAAACAGATTTCCATGAAGCAATTCCAGTGGCTAAAAATTTAATTGATTGTTATTCTA
CCCAAGCTTTTAGTGAACAGCGTAAAGAAAATTTAAAGAAAATTATTGGTGGTGATCCAC
AAAAAGTTGCTGATGTTTTAATTGATTATTCATACAAATCAAATTTACCTTTTAATATTT
TCGTTGGTCCAACTAATCATTTCAATAATATTGAAACAAGAGCTAAAGAATTATTAAATC
AAATTCAATTACAAAGAGAAAAAAATAATGTTCAAAAATCTTAATTATTAAAAAATAATA
AATAAATAAAAAAAAATAAAAAAATAAAAAAAAATAATAATAATAAAAT
Length of 3' end seq. 639
Connected seq. ID VSJ669P
Connected seq. 
>VSJ669P.Seq
ATCTTTTAAAATAAATTATATATATTTATATTTTATTATTAATAAATATGGAAAAAGAAC
AAGTTTGGTATATTACAGGTTGTACAAGTGGATGTGGATTAGCATTGGTTGAGAAATTAT
TAAAGATTAAGGGTACAAAAGTTGCAGGAACAACAAGGGATTTAAAAAAGATTGAACAAT
TATCAATTTATAAGGATCAAAATTTTTTAGCATTACAAGTTGACTTGGTAAATAGTAAAT
CAGTTGAAGAATCAATTGAAAAAACAATTAAACATTTTGGAAGTATTACTCATGTTGTAA
ATAATGCAGGCTTTGCTTTAATGGGTACTGTTGAAGAGGCAAGTGATAAAGAGCAAAGAG
AGCAAATGGACGTTTGCTATTTCGCTCCATTAAATGTAATTAGATCAGTGTTACCACACT
TTCGTTCAAAATCACATGGTTATATCTTTAATATTGGCTCTGGTGCTGGGTTTAGAGGTA
TAGCTAATTTGGGTGCTTATTCCGGTTCAAAATTCGCAATCACTGGTA----------AG
GCTTTGCTTTAATGGGTACTGTTGAANAGGCAAGTGATAAAGAGCAAAGAGAGCAAATGG
ACGTTTGCTATTTCGCTCCATTAAATGTAATTAGATCAGTGTTACCACACTTTCGTTCAA
AATCACATGGTTATATCTTTAATATTGGCTCTGGTGCTGGGTTTANAGGTATAGCTAATT
TGGGTGCTTATTCCGGTTCAAAATTCGCAATCACTGGTATTACCGAGGCATTACATGAAG
AGGTTAAACAATTCTCTATTAATGTATCAACTATTGTTTTAGGCTATATTGAAACAGATT
TCCATGAAGCAATTCCAGTGGCTAAAAATTTAATTGATTGTTATTCTACCCAAGCTTTTA
GTGAACAGCGTAAAGAAAATTTAAAGAAAATTATTGGTGGTGATCCACAAAAAGTTGCTG
ATGTTTTAATTGATTATTCATACAAATCAAATTTACCTTTTAATATTTTCGTTGGTCCAA
CTAATCATTTCAATAATATTGAAACAAGAGCTAAAGAATTATTAAATCAAATTCAATTAC
AAAGAGAAAAAAATAATGTTCAAAAATCTTAATTATTAAAAAATAATAAATAAATAAAAA
AAAATAAAAAAATAAAAAAAAATAATAATAATAAAAT
Length of connected seq. 1167
Full length Seq ID VSJ669E
Full length Seq. 
>VSJ669E.Seq
ATCTTTTAAAATAAATTATATATATTTATATTTTATTATTAATAAATATGGAAAAAGAAC
AAGTTTGGTATATTACAGGTTGTACAAGTGGATGTGGATTAGCATTGGTTGAGAAATTAT
TAAAGATTAAGGGTACAAAAGTTGCAGGAACAACAAGGGATTTAAAAAAGATTGAACAAT
TATCAATTTATAAGGATCAAAATTTTTTAGCATTACAAGTTGACTTGGTAAATAGTAAAT
CAGTTGAAGAATCAATTGAAAAAACAATTAAACATTTTGGAAGTATTACTCATGTTGTAA
ATAATGCAGGCTTTGCTTTAATGGGTACTGTTGAAGAGGCAAGTGATAAAGAGCAAAGAG
AGCAAATGGACGTTTGCTATTTCGCTCCATTAAATGTAATTAGATCAGTGTTACCACACT
TTCGTTCAAAATCACATGGTTATATCTTTAATATTGGCTCTGGTGCTGGGTTTAGAGGTA
TAGCTAATTTGGGTGCTTATTCCGGTTCAAAATTCGCAATCACTGGTATTACCGAGGCAT
TACATGAAGAGGTTAAACAATTCTCTATTAATGTATCAACTATTGTTTTAGGCTATATTG
AAACAGATTTCCATGAAGCAATTCCAGTGGCTAAAAATTTAATTGATTGTTATTCTACCC
AAGCTTTTAGTGAACAGCGTAAAGAAAATTTAAAGAAAATTATTGGTGGTGATCCACAAA
AAGTTGCTGATGTTTTAATTGATTATTCATACAAATCAAATTTACCTTTTAATATTTTCG
TTGGTCCAACTAATCATTTCAATAATATTGAAACAAGAGCTAAAGAATTATTAAATCAAA
TTCAATTACAAAGAGAAAAAAATAATGTTCAAAAATCTTAATTATTAAAAAATAATAAAT
AAATAAAAAAAAATAAAAAAATAAAAAAAAATAATAATAATAAAAT
Length of full length seq. 946