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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AHB126
Library AH
(Link to library)
Clone ID AHB126
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16336-1
Original site URL
Representative seq. ID AHB126P
(Link to Original site)
Representative DNA sequence 
>AHB126 (AHB126Q) /CSM/AH/AHB1-B/AHB126Q.Seq.d/
GAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATTAGAAACCATAAAAAGAA
TGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAAGAATTAAAAGGTGATAT
GCAAAAAAAGACAGTTGCCGTCCAAAAATTAACATATATTCAAATGTTAGGATTTGATAT
TAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAATAAATTTTCATCAAAAAG
AATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACAGATGTTATTGTATTGGC
AACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGTGAAGCCTATTTAGCATT
GAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAGTTGGCAAATGATATCCT
AACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCCATCACGGTGTTATATAA
GATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCAAAGTTAAGAGAGAAATT
GGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTGATTTGXXXXXXXXXXGT
AATAATATTTCAAAGGAGTTAATTTCATTGTTCACAGAACAATTAAATCCAGTTGGTCCA
AAAGCTCAAAAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAATGGATTAATGAT
CCAAAACATCAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTCAATACAAGTACA
TCTAGTCATCAAAAGAAACATCACAAACATCACCGTGGAGGATATGATGGTGATGATGAT
GAAGATGATGAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAATTTCAATCGTCAT
CCAATTGATATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCTAATAGTCCATAT
ATGTTGGGTGGTAAAGTATCAAAGAAATTATCAACCAATGATCCTGAAAATATTCCAGGG
TTCAACTAACTGGNATTTAGGTCATCTTCATGTTGGTGCATCATCAAATAGACCAATGCC
TCAAAAGG
sequence update 2002.10.25
Translated Amino Acid sequence 
KMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQKLTYIQMLGFDI
SWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFLSSNQSEAYLAL
NCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESLRPAFPKLREKL
DDPEPSVVSCSVNVI---

---NNISKELISLFTEQLNPVGPKAQKKVPIPEGLDLDEWINDPKHQEPIEEDEDDDIFN
TSTSSHQKKHHKHHRGGYDGDDDEDDETNSSHSGHSSSNFNRHPIDIQRQKEERLRKQAN
SPYMLGGKVSKKLSTNDPENIPGFN*lxfrssscwciik*tnask
Translated Amino Acid sequence (All Frames) 
Frame A:
env*knig*phqry*kp*ke*n*iyksmyk*n*rrikr*yakkdscrpkiniysnvri*y
*lgii*nc*syel**ifikknwifssitkf**rnrcycignssn*kgfliiesk*slfsi
elsfkylynrfskrvgk*ypniieytkntyfkeshhgvi*dileisriaktsipkvkrei
g*sraigcimlsqcdl---

---viifqrs*fhcsqnn*iqlvqklkrkyqfqkv*i*mnglmiqniknqlkrmkmmifs
iqvhlvikrnitnitvedmmvmmmkmmkpivliqviqvvisiviqlifkdkrkkd*enkl
ivhicwvvkyqrnyqpmilkifqgstnwxlghlhvgassnrpmpqk

Frame B:
KMFERTLVDLIRGIRNHKKNETKFINQCINEIKEELKGDMQKKTVAVQKLTYIQMLGFDI
SWASFKIVEVMSCNKFSSKRIGYLAASQSFNEGTDVIVLATHQIRKDFLSSNQSEAYLAL
NCLSNICTTDLARELANDILTLLSTQKTHILKRAITVLYKIFLRYPESLRPAFPKLREKL
DDPEPSVVSCSVNVI---

---**yfkgvnfivhrtiksswsksskestnsrrfrfr*md**sktsrtn*rg*r**yfq
ykyi*ssketsqtspwri*w****r**nq*fsfrsfk**fqsssn*ysktkgrkikkts*
*siyvgw*sikeiinq*s*kysrvqltgi*vifmlvhhqidqclkr

Frame C:
kclkehwltssevletikrmklnl*inv*mklkkn*kvickkrqlpskn*hifkc*dlil
vghhlkllkl*vvinfhqkeldi*qhhkvlmkeqmllywqliklerisyhrikvkpi*h*
ivfqifvqpi*qeswqmis*hy*vhkkhif*repsrcyirys*diqnr*dqhsqs*ernw
mipshrlyhaqsm*f---

---NNISKELISLFTEQLNPVGPKAQKKVPIPEGLDLDEWINDPKHQEPIEEDEDDDIFN
TSTSSHQKKHHKHHRGGYDGDDDEDDETNSSHSGHSSSNFNRHPIDIQRQKEERLRKQAN
SPYMLGGKVSKKLSTNDPENIPGFN*lxfrssscwciik*tnask
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AHB126 (AHB126Q) /CSM/AH/AHB1-B/AHB126Q.Seq.d/                       1524   0.0
VHO578 (VHO578Q) /CSM/VH/VHO5-D/VHO578Q.Seq.d/                       1124   0.0
VHH681 (VHH681Q) /CSM/VH/VHH6-D/VHH681Q.Seq.d/                       1124   0.0
VHA740 (VHA740Q) /CSM/VH/VHA7-B/VHA740Q.Seq.d/                       1124   0.0
VHA534 (VHA534Q) /CSM/VH/VHA5-B/VHA534Q.Seq.d/                       1124   0.0
SHL605 (SHL605Q) /CSM/SH/SHL6-A/SHL605Q.Seq.d/                       1124   0.0
SHJ269 (SHJ269Q) /CSM/SH/SHJ2-C/SHJ269Q.Seq.d/                       1124   0.0
SHH419 (SHH419Q) /CSM/SH/SHH4-A/SHH419Q.Seq.d/                       1124   0.0
SHB371 (SHB371Q) /CSM/SH/SHB3-C/SHB371Q.Seq.d/                       1124   0.0
SHA829 (SHA829Q) /CSM/SH/SHA8-B/SHA829Q.Seq.d/                       1124   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           36   2e-06  25
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    40   1e-04  16
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    32   1e-04  16
BX649578|BX649578.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-196L7.    40   3e-04  9
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   0.001  14
AE010193|AE010193.1 Pyrococcus furiosus DSM 3638, section 68 of 173 of the complete genome.    36   0.002  5
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    30   0.007  11
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.010  19
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    38   0.026  10
AL049185|AL049185.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P2.    36   0.028  15
dna update 2004. 2.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC005142_1(BC005142|pid:none) Homo sapiens adaptor-related prote...   240   7e-62
BC010065_1(BC010065|pid:none) Homo sapiens adaptor-related prote...   240   7e-62
AB384738_1(AB384738|pid:none) Synthetic construct DNA, clone: pF...   240   7e-62
(O14617) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   240   7e-62
AB015979_1(AB015979|pid:none) Bos taurus mRNA for adaptor relate...   238   3e-61
AK141789_1(AK141789|pid:none) Mus musculus 9 days embryo whole b...   238   3e-61
AK155518_1(AK155518|pid:none) Mus musculus NOD-derived CD11c +ve...   238   3e-61
(O54774) RecName: Full=AP-3 complex subunit delta-1; AltName: Fu...   238   3e-61
BC037477_1(BC037477|pid:none) Mus musculus adaptor-related prote...   238   3e-61
BC154680_1(BC154680|pid:none) Xenopus tropicalis adaptor-related...   236   1e-60
protein update 2009. 4.27
PSORT 

 psg: 0.52  gvh: 0.42  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 16.0 %: nuclear
	  4.0 %: peroxisomal

>> prediction for AHB126 is cyt
5' end seq. ID AHB126F
5' end seq. 
>AHB126F.Seq
GAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATTAGAAACCATAAAAAGAA
TGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAAGAATTAAAAGGTGATAT
GCAAAAAAAGACAGTTGCCGTCCAAAAATTAACATATATTCAAATGTTAGGATTTGATAT
TAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAATAAATTTTCATCAAAAAG
AATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACAGATGTTATTGTATTGGC
AACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGTGAAGCCTATTTAGCATT
GAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAGTTGGCAAATGATATCCT
AACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCCATCACGGTGTTATATAA
GATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCAAAGTTAAGAGAGAAATT
GGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTGATTTGNNNNNNNNNN
Length of 5' end seq. 598
3' end seq. ID AHB126Z
3' end seq. 
>AHB126Z.Seq
NNNNNNNNNNGTAATAATATTTCAAAGGAGTTAATTTCATTGTTCACAGAACAATTAAAT
CCAGTTGGTCCAAAAGCTCAAAAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAA
TGGATTAATGATCCAAAACATCAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTC
AATACAAGTACATCTAGTCATCAAAAGAAACATCACAAACATCACCGTGGAGGATATGAT
GGTGATGATGATGAAGATGATGAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAAT
TTCAATCGTCATCCAATTGATATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCT
AATAGTCCATATATGTTGGGTGGTAAAGTATCAAAGAAATTATCAACCAATGATCCTGAA
AATATTCCAGGGTTCAACTAACTGGNATTTAGGTCATCTTCATGTTGGTGCATCATCAAA
TAGACCAATGCCTCAAAAGG
Length of 3' end seq. 500
Connected seq. ID AHB126P
Connected seq. 
>AHB126P.Seq
GAAAATGTTTGAAAGAACATTGGTTGACCTCATCAGAGGTATTAGAAACCATAAAAAGAA
TGAAACTAAATTTATAAATCAATGTATAAATGAAATTAAAGAAGAATTAAAAGGTGATAT
GCAAAAAAAGACAGTTGCCGTCCAAAAATTAACATATATTCAAATGTTAGGATTTGATAT
TAGTTGGGCATCATTTAAAATTGTTGAAGTTATGAGTTGTAATAAATTTTCATCAAAAAG
AATTGGATATTTAGCAGCATCACAAAGTTTTAATGAAGGAACAGATGTTATTGTATTGGC
AACTCATCAAATTAGAAAGGATTTCTTATCATCGAATCAAAGTGAAGCCTATTTAGCATT
GAATTGTCTTTCAAATATTTGTACAACCGATTTAGCAAGAGAGTTGGCAAATGATATCCT
AACATTATTGAGTACACAAAAAACACATATTTTAAAGAGAGCCATCACGGTGTTATATAA
GATATTCTTGAGATATCCAGAATCGCTAAGACCAGCATTCCCAAAGTTAAGAGAGAAATT
GGATGATCCCGAGCCATCGGTTGTATCATGCTCAGTCAATGTGATTTG----------GT
AATAATATTTCAAAGGAGTTAATTTCATTGTTCACAGAACAATTAAATCCAGTTGGTCCA
AAAGCTCAAAAGAAAGTACCAATTCCAGAAGGTTTAGATTTAGATGAATGGATTAATGAT
CCAAAACATCAAGAACCAATTGAAGAGGATGAAGATGATGATATTTTCAATACAAGTACA
TCTAGTCATCAAAAGAAACATCACAAACATCACCGTGGAGGATATGATGGTGATGATGAT
GAAGATGATGAAACCAATAGTTCTCATTCAGGTCATTCAAGTAGTAATTTCAATCGTCAT
CCAATTGATATTCAAAGACAAAAGGAAGAAAGATTAAGAAAACAAGCTAATAGTCCATAT
ATGTTGGGTGGTAAAGTATCAAAGAAATTATCAACCAATGATCCTGAAAATATTCCAGGG
TTCAACTAACTGGNATTTAGGTCATCTTCATGTTGGTGCATCATCAAATAGACCAATGCC
TCAAAAGG
Length of connected seq. 1078
Full length Seq ID -
Full length Seq. -
Length of full length seq. -