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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U03977-1
Contig ID Contig-U03977-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U03977-1 (Contig-U03977-1Q) /CSM_Contig/Contig-U03977-1Q.Seq.d
CCACCTTATTCAATAGTAGAAATTTCAAATACATTTAAATTAAATTCAAC
AATTTGTGAATCAAGTGAAAATTTATTAAAACTATATAGAACTAAAATAT
TAGGTGGTATTGAAGAAGTTCAAAGTCAATTTACCAATATTGATGATGGT
ATATTTTCAGCGGCATCAGTTTATATTATGACACAACAACATTCAATAAA
TATTGATCATACTCTATTACTTAGTT
Gap no gap
Contig length 226
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2467261
End point 2467487
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U03977
List of clone(s) 

est1=SLD615F,1,227
Translated Amino Acid sequence 
PPYSIVEISNTFKLNSTICESSENLLKLYRTKILGGIEEVQSQFTNIDDGIFSAASVYIM
TQQHSINIDHTLLLS
Translated Amino Acid sequence (All Frames) 
Frame A:
PPYSIVEISNTFKLNSTICESSENLLKLYRTKILGGIEEVQSQFTNIDDGIFSAASVYIM
TQQHSINIDHTLLLS


Frame B:
hliq**kfqihln*iqqfvnqvkiy*nyielky*vvlkkfkvnlpilmmvyfqrhqfil*
hnniq*iliilyylv


Frame C:
tlfnsrnfkyi*ikfnnl*ik*kfikti*n*nirwy*rssksiyqy**wyifsgislyyd
tttfnky*sysit*
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U03977-1 (Contig-U03977-1Q)
/CSM_Contig/Contig-U03977-1Q.Seq.d
         (226 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U03977-1 (Contig-U03977-1Q) /CSM_Contig/Conti...   448  e-126
Contig-U06961-1 (Contig-U06961-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U12127-1 (Contig-U12127-1Q) /CSM_Contig/Conti...    36  0.015
Contig-U14177-1 (Contig-U14177-1Q) /CSM_Contig/Conti...    34  0.060
Contig-U13312-1 (Contig-U13312-1Q) /CSM_Contig/Conti...    34  0.060
Contig-U11820-1 (Contig-U11820-1Q) /CSM_Contig/Conti...    34  0.060
Contig-U10366-1 (Contig-U10366-1Q) /CSM_Contig/Conti...    34  0.060
Contig-U09395-1 (Contig-U09395-1Q) /CSM_Contig/Conti...    34  0.060
Contig-U09385-1 (Contig-U09385-1Q) /CSM_Contig/Conti...    34  0.060
Contig-U06986-1 (Contig-U06986-1Q) /CSM_Contig/Conti...    34  0.060

>Contig-U03977-1 (Contig-U03977-1Q) /CSM_Contig/Contig-U03977-1Q.Seq.d
          Length = 226

 Score =  448 bits (226), Expect = e-126
 Identities = 226/226 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaccttattcaatagtagaaatttcaaatacatttaaattaaattcaacaatttgtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccaccttattcaatagtagaaatttcaaatacatttaaattaaattcaacaatttgtgaa 60

                                                                       
Query: 61  tcaagtgaaaatttattaaaactatatagaactaaaatattaggtggtattgaagaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaagtgaaaatttattaaaactatatagaactaaaatattaggtggtattgaagaagtt 120

                                                                       
Query: 121 caaagtcaatttaccaatattgatgatggtatattttcagcggcatcagtttatattatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaagtcaatttaccaatattgatgatggtatattttcagcggcatcagtttatattatg 180

                                                         
Query: 181 acacaacaacattcaataaatattgatcatactctattacttagtt 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acacaacaacattcaataaatattgatcatactctattacttagtt 226


>Contig-U06961-1 (Contig-U06961-1Q) /CSM_Contig/Contig-U06961-1Q.Seq.d
          Length = 605

 Score = 38.2 bits (19), Expect = 0.004
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  aaattaaattcaacaattt 55
           |||||||||||||||||||
Sbjct: 254 aaattaaattcaacaattt 272


>Contig-U12127-1 (Contig-U12127-1Q) /CSM_Contig/Contig-U12127-1Q.Seq.d
          Length = 1302

 Score = 36.2 bits (18), Expect = 0.015
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 103 ggtggtattgaagaagtt 120
           ||||||||||||||||||
Sbjct: 197 ggtggtattgaagaagtt 180


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5158
Number of Sequences: 6905
Number of extensions: 5158
Number of successful extensions: 1753
Number of sequences better than 10.0: 200
length of query: 226
length of database: 5,674,871
effective HSP length: 15
effective length of query: 211
effective length of database: 5,571,296
effective search space: 1175543456
effective search space used: 1175543456
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6. 9
Homology vs DNA 
Query= Contig-U03977-1 (Contig-U03977-1Q) /CSM_Contig/Contig-U03977-1Q.Seq.d
         (226 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU061249) Dictyostelium discoideum slug cDNA, clone SLD615.      448   e-122  1
(EW695513) Q1_Javad_1EPTO_23_O19_303.F_226 Torpedo californi...    52   0.009  1
(AC215722) Homo sapiens chromosome 7 clone CH17-87G6, *** SE...    40   0.015  4
(AL845322) Zebrafish DNA sequence from clone DKEYP-114G9 in ...    40   0.064  5
(CU468829) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   0.31   5
(AC188451) Macaca mulatta chromosome UNK clone CH250-53H12, ...    34   0.31   2
(BV226090) S233P6488FD7.T0 LabradorRetriever Canis familiari...    28   0.35   3
(ER556298) 1093016353866 Global-Ocean-Sampling_GS-35-01-01-1...    36   0.39   2
(AY737555) Clostridium perfringens strain F5603 plasmid cpe ...    34   0.49   6
(AF339483) Sagiyama virus strain Original nonstructural prot...    46   0.54   1
(AF023301) Sagiyama virus 3'UTR.                                   46   0.54   1
(AB032553) Sagiyama virus genomic RNA, complete genome.            46   0.54   1
(AC128998) Rattus norvegicus clone CH230-8O10, *** SEQUENCIN...    46   0.54   1
(AC099435) Rattus norvegicus clone CH230-97E3, *** SEQUENCIN...    46   0.54   1
(EJ262742) 1095349052134 Global-Ocean-Sampling_GS-27-01-01-1...    46   0.54   1
(FG292901) 1108770646510 New World Screwworm Larvae 9387 EST...    46   0.54   1
(AC172875) Brassica rapa subsp. pekinensis clone KBrH014P02,...    42   0.55   3
(CU457773) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.60   2
(AX348868) Sequence 326 from Patent WO0202807.                     36   0.76   3
(CP001205) Borrelia burgdorferi ZS7, complete genome.              36   0.82   12
(AE000783) Borrelia burgdorferi B31, complete genome.              36   0.85   12
(DN303584) PL05003B1A08 cDNA from sexually mature hermaphodi...    28   1.1    4
(AC005727) Arabidopsis thaliana chromosome 2 clone F8N16 map...    36   1.2    2
(AC003970) Arabidopsis thaliana chromosome I BAC F14J9 genom...    32   1.2    2
(CF406097) CH3#040_C03T7 Canine heart normalized cDNA Librar...    34   1.5    2
(CF406096) CH3#040_C03T3 Canine heart normalized cDNA Librar...    34   1.5    2
(CB171816) OIJ603163023.R1 CSEQFN46 thyroid and parathyroid ...    34   1.5    2
(BH964673) odj22h07.b1 B.oleracea002 Brassica oleracea genom...    32   1.5    2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   1.8    11
(CU914629) Zebrafish DNA sequence from clone CH1073-299I24 i...    44   2.1    1
(GF094231) 40265 Glycine max young leaves DNA Glycine max ST...    44   2.1    1
(AC120875) Mus musculus chromosome 1, clone RP23-317M5, comp...    44   2.1    1
(CU062424) S.lycopersicum DNA sequence from clone LE_HBa-147...    44   2.1    1
(AP008216) Oryza sativa (japonica cultivar-group) genomic DN...    44   2.1    1
(AM440284) Vitis vinifera contig VV78X161868.10, whole genom...    44   2.1    1
(AC189586) Brassica rapa subsp. pekinensis clone KBrH012I05,...    44   2.1    1
(AC027660) Oryza sativa Japonica Group chromosome 10 clone B...    44   2.1    1
(EA703056) Sequence 81935 from patent US 7365185.                  44   2.1    1
(AY131459) Epirinus hilaris 16S ribosomal RNA gene, partial ...    44   2.1    1
(AY131457) Epirinus sp. dgi1 16S ribosomal RNA gene, partial...    44   2.1    1
(AL049747) Human DNA sequence from clone CITF22-62D4 on chro...    44   2.1    1
(AC020740) Homo sapiens BAC clone RP11-795O2 from 4, complet...    44   2.1    1
(CU855676) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.1    1
(CU638670) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.1    1
(CU234122) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.1    1
(AC181673) Strongylocentrotus purpuratus clone R3-1040P22, W...    44   2.1    1
(AC176627) Strongylocentrotus purpuratus clone R3-3080D08, W...    44   2.1    1
(AC163430) Bos taurus clone CH240-131J9, WORKING DRAFT SEQUE...    44   2.1    1
(AC025044) Oryza sativa chromosome 10 clone OSJNBa0069E21, *...    44   2.1    1
(FH732898) CHO_OF5114xl14r1.ab1 CHO_OF5 Nicotiana tabacum ge...    44   2.1    1
(CZ533257) SRAA-aac84b04.b1 Strongyloides ratti whole genome...    44   2.1    1
(CW658024) OG_BBa0009H10.f OG_BBa Oryza glaberrima genomic c...    44   2.1    1
(CT345744) Sus scrofa genomic clone CH242-5K5, genomic surve...    44   2.1    1
(CT267285) Sus scrofa genomic clone CH242-194E21, genomic su...    44   2.1    1
(CL862334) OR_CBa0094J05.f OR_CBa Oryza rufipogon genomic cl...    44   2.1    1
(DN568844) 92234271 Sea Urchin primary mesenchyme cell cDNA ...    44   2.1    1
(CR434761) Xenopus tropicalis EST, clone TTbA067k13 3'.            44   2.1    1
(FG289260) 1108793295624 New World Screwworm Egg 9261 ESTs C...    44   2.1    1
(FG284108) 1108770655932 New World Screwworm Egg 9261 ESTs C...    44   2.1    1
(FG283637) 1108770632294 New World Screwworm Egg 9261 ESTs C...    44   2.1    1
(EW697238) Q4_Javad_1EPTO_68_P10_160.F_005 Torpedo californi...    44   2.1    1
(EW697167) Q4_Javad_1EPTO_63_L02_028.F_244 Torpedo californi...    44   2.1    1
(EW697139) Q4_Javad_1EPTO_61_J24_378.F_245 Torpedo californi...    44   2.1    1
(EW697002) Q4_Javad_1EPTO_25_J16_250.F_226 Torpedo californi...    44   2.1    1
(EW696670) Q3_Javad_1EPTO_64_D11_164.F_250 Torpedo californi...    44   2.1    1
(EW696600) Q3_Javad_1EPTO_60_F09_134.F_245 Torpedo californi...    44   2.1    1
(EW696446) Q3_Javad_1EPTO_22_P17_272.F_222 Torpedo californi...    44   2.1    1
(EW695692) Q1_Javad_1EPTO_63_G09_135.F_243 Torpedo californi...    44   2.1    1
(EW695603) Q1_Javad_1EPTO_45_O13_207.F_238 Torpedo californi...    44   2.1    1
(CP000395) Borrelia afzelii PKo, complete genome.                  44   2.1    1
(AC146650) Medicago truncatula clone mth2-14j5, complete seq...    32   2.6    7
(AC146389) Pan troglodytes BAC clone RP43-143J12 from chromo...    38   2.7    5
(AC008835) Homo sapiens chromosome 5 clone CTD-2148E3, compl...    40   2.7    4
(AC010961) Homo sapiens clone RP11-11E2, WORKING DRAFT SEQUE...    36   3.0    4
(CR382295) Zebrafish DNA sequence from clone DKEYP-15G12 in ...    42   3.0    3
(AC113167) Homo sapiens chromosome 5 clone CTC-529J12, compl...    36   3.3    4
(AU269201) Dictyostelium discoideum vegetative cDNA clone:VS...    38   3.7    2
(AC212926) Populus trichocarpa clone POP014-K13, complete se...    42   3.8    5
(BQ090993) ku23b10.y1 Strongyloides ratti L3 adult pAMP1 v1 ...    34   3.9    2
(AC111480) Rattus norvegicus clone CH230-86G20, WORKING DRAF...    32   4.0    2
(CR388230) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    30   4.0    2
(AC215958) Procavia capensis clone CH280-150O8, WORKING DRAF...    34   4.0    2
(AC132972) Rattus norvegicus clone CH230-244C18, *** SEQUENC...    32   4.1    2
(AC190231) Pan troglodytes BAC clone CH251-739F15 from chrom...    34   4.1    2
(AC083869) Homo sapiens chromosome 7 clone RP11-733N14, comp...    34   4.1    2
(AC009541) Human Chromosome 7 clone RP11-233L24, complete se...    34   4.1    2
(AU269202) Dictyostelium discoideum vegetative cDNA clone:VS...    38   4.1    2
(CT027714) Zebrafish DNA sequence from clone CH211-168N8 in ...    32   4.2    2
(BX678774) Mouse DNA sequence from clone RP23-193A4 on chrom...    30   4.2    2
(DU272333) 1098421131920 CHORI-243 Ovis aries genomic clone ...    40   4.4    2
(AM463897) Vitis vinifera, whole genome shotgun sequence, co...    34   4.4    2
(EY336271) CAWY7581.rev CAWY Helobdella robusta Subtracted E...    30   4.4    3
(AC171084) Bos taurus clone CH240-237C13, WORKING DRAFT SEQU...    38   4.5    3
(CU468013) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    40   4.9    7
(ET681366) CHO_OF334xg08r1.ab1 CHO_OF Nicotiana tabacum geno...    32   5.1    2
(AL954132) Zebrafish DNA sequence from clone DKEY-32N7.            36   5.2    6
(CR049474) Reverse strand read from insert in 3'HPRT inserti...    30   5.5    2
(CZ590804) OA_BBa0185M06.r OA_BBa Oryza alta genomic clone O...    32   5.6    2
(EY334399) CAWY6335.rev CAWY Helobdella robusta Subtracted E...    30   5.7    3
(EJ082218) 1095460053381 Global-Ocean-Sampling_GS-26-01-01-1...    34   5.7    2
(FC817945) Sr_pAMT7_010g12_T7 S. ratti mixed stage pAMP Stro...    34   6.0    2
(EJ006634) 1091139234551 Global-Ocean-Sampling_GS-26-01-01-1...    34   6.1    2
(EJ304448) 1095390067718 Global-Ocean-Sampling_GS-27-01-01-1...    34   6.1    2
(EJ008251) 1095403503532 Global-Ocean-Sampling_GS-26-01-01-1...    34   6.2    2
(AF443871) Homo sapiens Ras-like GTP-binding protein (RAB27A...    36   6.2    4
(EK394771) 1095469515726 Global-Ocean-Sampling_GS-31-01-01-1...    34   6.8    2
(AC005314) Arabidopsis thaliana chromosome 2 clone T32F12 ma...    38   7.0    2
(FG284740) 1108770680364 New World Screwworm Egg 9261 ESTs C...    38   7.0    2
(BX179654) Danio rerio genomic clone DKEY-179K23, genomic su...    30   7.1    3
(ES401830) MUT04-E05.y1d-s SHGC-MUT Mytilus californianus cD...    34   7.1    2
(AC022238) Homo sapiens chromosome 13 clone RP11-425G18, WOR...    34   7.5    6
(AC024432) Homo sapiens chromosome 1 clone RP11-93D16 map 1,...    36   7.6    6
(AB236337) Clostridium perfringens F5603 plasmid pCPF5603 DN...    34   7.7    7
(AC156911) Bos taurus clone CH240-55L6, WORKING DRAFT SEQUEN...    40   7.8    5
(AL035456) Human DNA sequence from clone RP5-1099D15 on chro...    40   8.4    4
(CU550704) Zebrafish DNA sequence from clone CH1073-176C2 in...    42   8.4    1
(CR926463) Zebrafish DNA sequence from clone DKEY-175G6 in l...    42   8.4    1
(BX649290) Zebrafish DNA sequence from clone DKEYP-10B2 in l...    42   8.4    1
(BX649263) Zebrafish DNA sequence from clone DKEY-21O22 in l...    42   8.4    1
(BX572621) Zebrafish DNA sequence from clone DKEY-34B22 in l...    42   8.4    1
(BX005376) Zebrafish DNA sequence from clone DKEY-238K10 in ...    42   8.4    1
(AL929252) Zebrafish DNA sequence from clone CH211-150G13 in...    42   8.4    1
(AL645800) Zebrafish DNA sequence from clone XX-184L24 Conta...    42   8.4    1
(BV257961) S235P6479RB4.T0 ItalianGreyhound Canis familiaris...    42   8.4    1
(AF129005) Mus musculus VNO olfactory cluster.                     42   8.4    1
(AC165969) Mus musculus BAC clone RP23-141K11 from chromosom...    42   8.4    1
(AC158790) Mus musculus chromosome 1, clone RP23-223M9, comp...    42   8.4    1
(AC103620) Mus musculus chromosome 1, clone RP24-219C22, com...    42   8.4    1
(CU457732) S.lycopersicum DNA sequence from clone LE_HBa-182...    42   8.4    1
(CR382138) Debaryomyces hansenii strain CBS767 chromosome F ...    42   8.4    1
(AM478247) Vitis vinifera, whole genome shotgun sequence, co...    42   8.4    1
(AJ414555) Bos taurus mRNA for IkB kinase-alpha (bIKKalpha g...    42   8.4    1
(AC190391) Canis Familiaris chromosome 2, clone XX-25C16, co...    42   8.4    1
(AL132952) Caenorhabditis elegans YAC Y51H4A.                      42   8.4    1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    42   8.4    1
(AC078923) Homo sapiens 12 BAC RP11-699I16 (Roswell Park Can...    42   8.4    1
(AC118119) Rattus norvegicus clone CH230-24J22, *** SEQUENCI...    42   8.4    1
(FP102152) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.4    1
(FP102052) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   8.4    1
(FP074854) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   8.4    1
(CU856405) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.4    1
(CU695026) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   8.4    1
(CR926458) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   8.4    1
(BX897723) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    42   8.4    1
(AC232690) Solanum lycopersicum chromosome 0 clone C00Hba023...    42   8.4    1
(AC230355) Bos taurus clone CH240-511J10, WORKING DRAFT SEQU...    42   8.4    1
(AC230354) Bos taurus clone CH240-511I13, WORKING DRAFT SEQU...    42   8.4    1
(AC230076) Bos taurus clone CH240-522C9, WORKING DRAFT SEQUE...    42   8.4    1
(AC224703) Bos taurus clone CH240-478D9, WORKING DRAFT SEQUE...    42   8.4    1
(AC218565) Bos taurus clone CH240-311F22, WORKING DRAFT SEQU...    42   8.4    1
(AC210355) Solanum lycopersicum chromosome 7 clone C07HBa011...    42   8.4    1
(AC183130) Bos taurus clone CH240-101K14, WORKING DRAFT SEQU...    42   8.4    1
(AC179148) Strongylocentrotus purpuratus clone R3-4012F5, WO...    42   8.4    1
(AC178943) Strongylocentrotus purpuratus clone R3-3121D4, WO...    42   8.4    1
(AC178627) Strongylocentrotus purpuratus clone R3-3007O4, WO...    42   8.4    1
(AC177123) Strongylocentrotus purpuratus clone R3-4014F4, WO...    42   8.4    1
(AC176773) Strongylocentrotus purpuratus clone R3-3104I11, W...    42   8.4    1
(AC176057) Strongylocentrotus purpuratus clone R3-3024F12, W...    42   8.4    1
(AC170782) Bos taurus clone CH240-237A12, WORKING DRAFT SEQU...    42   8.4    1
(AC167298) Oryctolagus cuniculus clone LB1-320O3, WORKING DR...    42   8.4    1
(AC025255) Homo sapiens chromosome 12 clone RP11-17A5, WORKI...    42   8.4    1
(AC025117) Mus musculus chromosome 1 clone RP23-67M2 map 1, ...    42   8.4    1
(FH804968) OSB_1184004xl17f1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH804762) OSB_1184004xa24f1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH804737) OSB_1184004xm13r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH804730) OSB_1184004xk19r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH804726) OSB_1184004xk09r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH804564) OSB_1184002xj08r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH804436) OSB_1184002xl17r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH804422) OSB_1184002xj09r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH804248) OSB_1184002xe02r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH804229) OSB_1184002xa04r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH804004) OSB_1184002xa03f1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH803884) OSB_1184003xf04f1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH803805) OSB_1184003xf07r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH803773) OSB_1184003xp05f1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH803507) OSB_1184003xc13r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH803500) OSB_1184003xa15r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH803275) OSB_1184001xf06f1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH803090) OSB_1184001xo18r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH803009) OSB_1184001xm18f1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH802998) OSB_1184001xk06f1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH802945) OSB_1184001xo11r1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH802838) OSB_1184001xi11f1.ab1 OSB_1184 Nicotiana tabacum ...    42   8.4    1
(FH801170) OSB_1182003xj11r1.ab1 OSB_1182 Nicotiana tabacum ...    42   8.4    1
(FH801134) OSB_1182003xh15f1.ab1 OSB_1182 Nicotiana tabacum ...    42   8.4    1
(FH801076) OSB_1182003xk19f1.ab1 OSB_1182 Nicotiana tabacum ...    42   8.4    1
(FH801049) OSB_1182002xj24r1.ab1 OSB_1182 Nicotiana tabacum ...    42   8.4    1
(FH801037) OSB_1182002xf16r1.ab1 OSB_1182 Nicotiana tabacum ...    42   8.4    1
(FH800828) OSB_1182002xg19f1.ab1 OSB_1182 Nicotiana tabacum ...    42   8.4    1
(FH800772) OSB_1182004xn07r1.ab1 OSB_1182 Nicotiana tabacum ...    42   8.4    1
(FH800727) OSB_1182004xn19f1.ab1 OSB_1182 Nicotiana tabacum ...    42   8.4    1
(FH800618) OSB_1182004xe09f1.ab1 OSB_1182 Nicotiana tabacum ...    42   8.4    1
(FH800513) OSB_1182001xi13r1.ab1 OSB_1182 Nicotiana tabacum ...    42   8.4    1
(FH800469) OSB_1181004xj08r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800446) OSB_1181004xd20r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800432) OSB_1181004xb08r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800418) OSB_1181004xn20f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800362) OSB_1181004xb16f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800356) OSB_1181004xb02f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800346) OSB_1181004xn11r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800340) OSB_1181004xl21r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800295) OSB_1181004xp15f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800233) OSB_1181004xb19f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800221) OSB_1181004xo08r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800218) OSB_1181004xm24r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800188) OSB_1181004xg08r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800180) OSB_1181004xe12r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800172) OSB_1181004xc18r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800158) OSB_1181004xo22f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800136) OSB_1181004xk08f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800103) OSB_1181004xc22f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH800034) OSB_1181004xc13r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799907) OSB_1181002xf22r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799849) OSB_1181002xd22f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799729) OSB_1181002xj09f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799704) OSB_1181002xb23f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799532) OSB_1181002xi23r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799516) OSB_1181002xg03r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799512) OSB_1181002xe17r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799482) OSB_1181002xo13f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799375) OSB_1181003xh02r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799357) OSB_1181003xb24r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799304) OSB_1181003xf08f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799299) OSB_1181003xd14f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799246) OSB_1181003xf17r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799210) OSB_1181003xn07f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799080) OSB_1181003xi24f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH799008) OSB_1181003xg09r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH798938) OSB_1181003xe15f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH798744) OSB_1181001xn07f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH798733) OSB_1181001xl05f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH798649) OSB_1181001xe02r1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH798482) OSB_1181001xm17f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH798455) OSB_1181001xg05f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH798436) OSB_1181001xc09f1.ab1 OSB_1181 Nicotiana tabacum ...    42   8.4    1
(FH787616) OSB_1174002xg14f1.ab1 OSB_1174 Nicotiana tabacum ...    42   8.4    1
(FH505250) CHO_OF4825xh11f1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   8.4    1
(FH024090) CHO_OF3244xc22r1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   8.4    1
(ET101551) QM0AAB19BB11RM1 CCER1 Citrus clementina genomic c...    42   8.4    1
(ER286385) 1092343572321 Global-Ocean-Sampling_GS-34-01-01-1...    42   8.4    1
(EK318574) 1095462421158 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.4    1
(EK307881) 1095462387089 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.4    1
(EK286755) 1095462315620 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.4    1
(EK032936) 1092956092658 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.4    1
(EK013694) 1092955215491 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.4    1
(EK013506) 1092955214907 Global-Ocean-Sampling_GS-31-01-01-1...    42   8.4    1
(EJ304280) 1095390064511 Global-Ocean-Sampling_GS-27-01-01-1...    42   8.4    1
(EJ100268) 1095467039301 Global-Ocean-Sampling_GS-26-01-01-1...    42   8.4    1
(CZ954788) 268617 Tomato EcoRI BAC Library Solanum lycopersi...    42   8.4    1
(CR023162) Forward strand read from insert in 3'HPRT inserti...    42   8.4    1
(ES407135) MUT04-O04.y1d-s SHGC-MUT Mytilus californianus cD...    42   8.4    1
(AT002417) Entamoeba histolytica cDNA clone:En045.                 42   8.4    1
(CV444122) EST898035 BEA Rhipicephalus microplus cDNA clone ...    42   8.4    1
(CT689470) Danio rerio EST, clone ZF_mu_197f21 3'.                 42   8.4    1
(CT689469) Danio rerio EST, clone ZF_mu_197f21 5'.                 42   8.4    1
(CT674414) Danio rerio EST, clone ZF_mu_295j17 5'.                 42   8.4    1
(CT665667) Danio rerio EST, clone ZF_mu_121e02 3'.                 42   8.4    1
(CT665666) Danio rerio EST, clone ZF_mu_121e02 3'.                 42   8.4    1
(BJ696694) Ptyochromis sp. 'redtail sheller' cDNA clone:no58...    42   8.4    1
(GD186320) PUC-50 Aphid Immune Substracted library Acyrthosi...    42   8.4    1
(FF447418) G178P60086RA1.T0 Acorn worm gastrula/neurula pCMV...    42   8.4    1
(EY589896) CAWU21388.rev CAWU Capitella sp. I ECS-2004 Prima...    42   8.4    1
(EY578344) CAWU15394.rev CAWU Capitella sp. I ECS-2004 Prima...    42   8.4    1
(EY577853) CAWU15157.fwd CAWU Capitella sp. I ECS-2004 Prima...    42   8.4    1
(EY577852) CAWU15157.rev CAWU Capitella sp. I ECS-2004 Prima...    42   8.4    1
(EY557038) CAWT3950.fwd CAWT Capitella sp. I ECS-2004 Primar...    42   8.4    1
(EY557037) CAWT3950.rev CAWT Capitella sp. I ECS-2004 Primar...    42   8.4    1
(EY534155) CAPF8316.rev CAPF Capitella sp. I ECS-2004 whole ...    42   8.4    1
(EY528730) CAPF5258.rev CAPF Capitella sp. I ECS-2004 whole ...    42   8.4    1
(AP010086) Lotus japonicus genomic DNA, clone: LjT39N06, TM0...    40   9.2    3
(AC231586) Monodelphis domestica clone VMRC18-709P8, WORKING...    36   9.2    3
(AC192613) Trichinella spiralis BAC clone TS195-33H12 from c...    32   9.2    7
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    30   9.8    2

>(AU061249) Dictyostelium discoideum slug cDNA, clone SLD615.
          Length = 227

 Score =  448 bits (226), Expect = e-122
 Identities = 226/226 (100%)
 Strand = Plus / Plus


Query: 1   ccaccttattcaatagtagaaatttcaaatacatttaaattaaattcaacaatttgtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccaccttattcaatagtagaaatttcaaatacatttaaattaaattcaacaatttgtgaa 60


Query: 61  tcaagtgaaaatttattaaaactatatagaactaaaatattaggtggtattgaagaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tcaagtgaaaatttattaaaactatatagaactaaaatattaggtggtattgaagaagtt 120


Query: 121 caaagtcaatttaccaatattgatgatggtatattttcagcggcatcagtttatattatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaagtcaatttaccaatattgatgatggtatattttcagcggcatcagtttatattatg 180


Query: 181 acacaacaacattcaataaatattgatcatactctattacttagtt 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 acacaacaacattcaataaatattgatcatactctattacttagtt 226

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 345,422,602
Number of extensions: 21868875
Number of successful extensions: 6642194
Number of sequences better than 10.0: 277
Length of query: 226
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 203
Effective length of database: 99,442,330,388
Effective search space: 20186793068764
Effective search space used: 20186793068764
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.29
Homology vs Protein 
Query= Contig-U03977-1 (Contig-U03977-1Q) /CSM_Contig/Contig-U03977-1Q.Seq.d
         (226 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54P62) RecName: Full=Origin recognition complex subunit 6; Alt...   149   3e-35

>(Q54P62) RecName: Full=Origin recognition complex subunit 6;
           AltName: Full=Origin replication complex subunit F;
          Length = 469

 Score =  149 bits (376), Expect = 3e-35
 Identities = 75/75 (100%), Positives = 75/75 (100%)
 Frame = +1

Query: 1   PPYSIVEISNTFKLNSTICESSENLLKLYRTKILGGIEEVQSQFTNIDDGIFSAASVYIM 180
           PPYSIVEISNTFKLNSTICESSENLLKLYRTKILGGIEEVQSQFTNIDDGIFSAASVYIM
Sbjct: 91  PPYSIVEISNTFKLNSTICESSENLLKLYRTKILGGIEEVQSQFTNIDDGIFSAASVYIM 150

Query: 181 TQQHSINIDHTLLLS 225
           TQQHSINIDHTLLLS
Sbjct: 151 TQQHSINIDHTLLLS 165

Lambda     K      H
   0.316    0.132    0.360

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 307,787,282
Number of extensions: 5454057
Number of successful extensions: 8358
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8357
Number of HSP's successfully gapped: 1
Length of query: 75
Length of database: 1,061,185,681
Length adjustment: 46
Effective length of query: 29
Effective length of database: 910,837,073
Effective search space: 26414275117
Effective search space used: 26414275117
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 27 (15.0 bits)
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U03977-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0