Contig-U00011-1
Contig ID Contig-U00011-1
Contig update 2001. 8.29
Contig sequence
>Contig-U00011-1 (Contig-U00011-1Q) /CSM_Contig/Contig-U00011-1Q.Seq.d
ACTGTTGGCCTACTGGNATTCACATCCTATTATAAATACAATAAAAACAA
TAATTACAAAAAAAATTGTCAAATAATTAAAAAAAAAACCAAAAAAAAAA
AGGGAATCTTTNAAAAANN----------TCGGTATGGTATTAATTATGG
TTTCAATTGTATGGATTGGTCAATACTTTAGAAGAAATAAATTAAATGGT
TGGGTAATTGAATGTTTAATTTTGATAATGATTCTATCATTAATGTCTAT
ATTTTTATATACATTAAATTGGATTTATATAATTTATAATTTACCACTTG
GTAAAAATATTTTTGAAATTGCAAATTGGGTTTATGTTTTAGCAAAGAAT
TTATTTTTCTTATTGTTAATTTATGCTGGTCAAGGTTGGACAACATCAAT
TTATTCTAAGTCAAAATTAAGAAATTGTATCAATATATTCTTAATTGTAT
TTAATATTTCATTGGGATGGTCATTAAGTTATATTTATGATTATTCGAAA
CCAGATATTAGACCATACAATTATTATTTAGATTGTTTACCTGGATACTT
TTCTTATGTTGCATACGGCTTATTAACGGTCTATTTTATTTATTGCAATA
TAATTTCCTATAGATCATTAAATGATGCTGAGCCGGCTAGAAAAACATTT
TTAAAAATTTTCACATTGGTTTTCTCAATATATATGTTGAGTCCGATTTT
GGTTGGTATCATCTCCCATTTCCTTGTGGATTATATGAAATTCAAAGTTT
CAACTATAATGAATCACACTTTGGATTTCATATTTTACATTACTCTAATG
GTGTTCTATAGGCCTACAGCTGGAAATATTTTAGTAACAAAATTAGTAAA
CCCTTATAATATTTAATTTCTCCAGACCTTTAATTTTTAATAAATAAATA
ATAATTTAAAGTTTTTTTC

Gap gap included
Contig length 909
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 2527285
End point 2528179
Strand (PLUS/MINUS) PLUS
Number of clones 11
Number of EST 12
Link to clone list U00011
List of clone(s)

est1=AFA220F,1,120
est2=AFD412Z,121,902
est3=AFI766Z,121,907
est4=AFG466Z,122,902
est5=AFO411Z,127,879
est6=AFA220Z,146,892
est7=AFF692Z,173,894
est8=AFO486Z,177,913
est9=AFJ374Z,189,878
est10=AFG476Z,219,900
est11=AFH362Z,248,910
est12=CFE324Z,370,860
Translated Amino Acid sequence
TVGLLXFTSYYKYNKNNNYKKNCQIIKKKTKKKKGIFXK---

---GMVLIMVSIVWIGQYFRRNKLNGWVIECLILIMILSLMSIFLYTLNWIYIIYNLPLG
KNIFEIANWVYVLAKNLFFLLLIYAGQGWTTSIYSKSKLRNCINIFLIVFNISLGWSLSY
IYDYSKPDIRPYNYYLDCLPGYFSYVAYGLLTVYFIYCNIISYRSLNDAEPARKTFLKIF
TLVFSIYMLSPILVGIISHFLVDYMKFKVSTIMNHTLDFIFYITLMVFYRPTAGNILVTK
LVNPYNI*flqtfnf**innnlkff


Translated Amino Acid sequence (All Frames)
Frame A:
TVGLLXFTSYYKYNKNNNYKKNCQIIKKKTKKKKGIFXK---

---svwy*lwfqlyglvntleein*mvg*lnv*f***fyh*clyfyih*igfi*fiiyhl
vkiflklqigfmf*qriyfsyc*fmlvkvgqhqfilsqn*eivsiys*lylifhwdgh*v
ifmiirnqildhtiii*ivyldtflmlhtay*rsilfiai*fpidh*mmlsrlekhf*kf
shwfsqyic*vrfwlvsspislwii*nskfql**itlwisyftll*wcsiglqleif**q
n**tliifnfsrplifnk*iii*sff

Frame B:
llaywxshpiintiktiitkkivk*lkkkpkkkresxkx---

---ryginygfncmdwsil*kk*ikwlgn*mfnfdndsiinvyifiyikldlynl*fttw
*kyf*ncklglcfskefiflivnlcwsrldninlf*vkikklyqyilnci*yfigmvikl
yl*lfetry*tiqllfrlftwilflccirlinglfyllqynfl*iik*c*ag*knifknf
higflniyvesdfgwyhlpfpcglyeiqsfnyneshfgfhilhysngvl*ayswkyfsnk
iskpl*ylispdl*flink**fkvff

Frame C:
cwptgihill*iq*kq*lqkklsnn*kknqkkkgnlxkx---

---GMVLIMVSIVWIGQYFRRNKLNGWVIECLILIMILSLMSIFLYTLNWIYIIYNLPLG
KNIFEIANWVYVLAKNLFFLLLIYAGQGWTTSIYSKSKLRNCINIFLIVFNISLGWSLSY
IYDYSKPDIRPYNYYLDCLPGYFSYVAYGLLTVYFIYCNIISYRSLNDAEPARKTFLKIF
TLVFSIYMLSPILVGIISHFLVDYMKFKVSTIMNHTLDFIFYITLMVFYRPTAGNILVTK
LVNPYNI*flqtfnf**innnlkff

own update 2004. 6.21
Homology vs CSM-cDNA
Query= Contig-U00011-1 (Contig-U00011-1Q)
/CSM_Contig/Contig-U00011-1Q.Seq.d
(919 letters)

Database: CSM
8402 sequences; 8,075,542 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U00011-1 (Contig-U00011-1Q) /CSM_Contig/Conti... 1485 0.0
Contig-U11087-1 (Contig-U11087-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U14860-1 (Contig-U14860-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U15666-1 (Contig-U15666-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U15043-1 (Contig-U15043-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U12103-1 (Contig-U12103-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U11906-1 (Contig-U11906-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U15950-1 (Contig-U15950-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U15649-1 (Contig-U15649-1Q) /CSM_Contig/Conti... 36 0.092
Contig-U15323-1 (Contig-U15323-1Q) /CSM_Contig/Conti... 36 0.092

>Contig-U00011-1 (Contig-U00011-1Q) /CSM_Contig/Contig-U00011-1Q.Seq.d
Length = 919

Score = 1485 bits (749), Expect = 0.0
Identities = 749/749 (100%)
Strand = Plus / Plus


Query: 130 tcggtatggtattaattatggtttcaattgtatggattggtcaatactttagaagaaata 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 tcggtatggtattaattatggtttcaattgtatggattggtcaatactttagaagaaata 189


Query: 190 aattaaatggttgggtaattgaatgtttaattttgataatgattctatcattaatgtcta 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 aattaaatggttgggtaattgaatgtttaattttgataatgattctatcattaatgtcta 249


Query: 250 tatttttatatacattaaattggatttatataatttataatttaccacttggtaaaaata 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tatttttatatacattaaattggatttatataatttataatttaccacttggtaaaaata 309


Query: 310 tttttgaaattgcaaattgggtttatgttttagcaaagaatttatttttcttattgttaa 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tttttgaaattgcaaattgggtttatgttttagcaaagaatttatttttcttattgttaa 369


Query: 370 tttatgctggtcaaggttggacaacatcaatttattctaagtcaaaattaagaaattgta 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tttatgctggtcaaggttggacaacatcaatttattctaagtcaaaattaagaaattgta 429


Query: 430 tcaatatattcttaattgtatttaatatttcattgggatggtcattaagttatatttatg 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tcaatatattcttaattgtatttaatatttcattgggatggtcattaagttatatttatg 489


Query: 490 attattcgaaaccagatattagaccatacaattattatttagattgtttacctggatact 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 attattcgaaaccagatattagaccatacaattattatttagattgtttacctggatact 549


Query: 550 tttcttatgttgcatacggcttattaacggtctattttatttattgcaatataatttcct 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tttcttatgttgcatacggcttattaacggtctattttatttattgcaatataatttcct 609


Query: 610 atagatcattaaatgatgctgagccggctagaaaaacatttttaaaaattttcacattgg 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atagatcattaaatgatgctgagccggctagaaaaacatttttaaaaattttcacattgg 669


Query: 670 ttttctcaatatatatgttgagtccgattttggttggtatcatctcccatttccttgtgg 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ttttctcaatatatatgttgagtccgattttggttggtatcatctcccatttccttgtgg 729


Query: 730 attatatgaaattcaaagtttcaactataatgaatcacactttggatttcatattttaca 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 attatatgaaattcaaagtttcaactataatgaatcacactttggatttcatattttaca 789


Query: 790 ttactctaatggtgttctataggcctacagctggaaatattttagtaacaaaattagtaa 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 ttactctaatggtgttctataggcctacagctggaaatattttagtaacaaaattagtaa 849


Query: 850 acccttataatatttaatttctccagacc 878
|||||||||||||||||||||||||||||
Sbjct: 850 acccttataatatttaatttctccagacc 878


Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggnattcacatcctatta 32
||||||||||||||||||||||||||||||||
Sbjct: 1 actgttggcctactggnattcacatcctatta 32


>Contig-U11087-1 (Contig-U11087-1Q) /CSM_Contig/Contig-U11087-1Q.Seq.d
Length = 1974

Score = 42.1 bits (21), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus


Query: 1 actgttggcctactggnattcaca 24
||||||||||||||||||||||||
Sbjct: 1 actgttggcctactggnattcaca 24


>Contig-U14860-1 (Contig-U14860-1Q) /CSM_Contig/Contig-U14860-1Q.Seq.d
Length = 567

Score = 40.1 bits (20), Expect = 0.006
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 724 ttgtggattatatgaaattc 743
||||||||||||||||||||
Sbjct: 432 ttgtggattatatgaaattc 451


Database: CSM
Posted date: Jun 21, 2004 12:56 PM
Number of letters in database: 8,075,542
Number of sequences in database: 8402

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,395
Number of Sequences: 8402
Number of extensions: 24395
Number of successful extensions: 3323
Number of sequences better than 10.0: 818
length of query: 919
length of database: 8,075,542
effective HSP length: 16
effective length of query: 903
effective length of database: 7,941,110
effective search space: 7170822330
effective search space used: 7170822330
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.14
Homology vs DNA
Query= Contig-U00011-1 (Contig-U00011-1Q) /CSM_Contig/Contig-U00011-1Q.Seq.d
(919 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ341542) Dictyostelium discoideum cDNA clone:dda7h04, 3' e... 1435 0.0 1
(BJ342335) Dictyostelium discoideum cDNA clone:dda13d18, 3' ... 1433 0.0 1
(BJ344135) Dictyostelium discoideum cDNA clone:dda18d17, 3' ... 1427 0.0 1
(BJ346087) Dictyostelium discoideum cDNA clone:dda29f04, 3' ... 1423 0.0 1
(BJ346039) Dictyostelium discoideum cDNA clone:dda29l22, 3' ... 1324 0.0 1
(BJ344568) Dictyostelium discoideum cDNA clone:dda19d19, 3' ... 1300 0.0 1
(BJ342405) Dictyostelium discoideum cDNA clone:dda13h20, 3' ... 1241 0.0 1
(BJ342972) Dictyostelium discoideum cDNA clone:dda15l15, 3' ... 1183 0.0 1
(BJ340378) Dictyostelium discoideum cDNA clone:dda12g24, 3' ... 1070 0.0 2
(BJ342672) Dictyostelium discoideum cDNA clone:dda1g06, 3' e... 1063 0.0 2
(BJ374601) Dictyostelium discoideum cDNA clone:ddc9p05, 3' e... 680 0.0 2
(BJ346560) Dictyostelium discoideum cDNA clone:dda24g09, 3' ... 668 0.0 1
(CS468878) Sequence 69 from Patent EP1748080. 36 8e-05 14
(CS419355) Sequence 69 from Patent WO2006094836. 36 8e-05 14
(AC166091) Glycine max clone gmw1-11j16, complete sequence. 40 3e-04 8
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 34 5e-04 13
(BJ325704) Dictyostelium discoideum cDNA clone:dda1g06, 5' e... 56 0.002 1
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 38 0.006 10
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 36 0.007 12
(AL034557) Plasmodium falciparum MAL4P1. 40 0.009 12
(ER595796) 1093016222204 Global-Ocean-Sampling_GS-36-01-01-2... 52 0.011 2
(BJ392202) Dictyostelium discoideum cDNA clone:dds26c24, 5' ... 42 0.011 2
(AC093714) Homo sapiens BAC clone RP11-458K10 from 7, comple... 38 0.015 8
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.016 12
(AC219764) Bos taurus clone CH240-323J5, WORKING DRAFT SEQUE... 36 0.022 7
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 34 0.024 13
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 32 0.030 10
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 0.032 15
(BJ392146) Dictyostelium discoideum cDNA clone:dds26g13, 5' ... 42 0.049 2
(CS468877) Sequence 68 from Patent EP1748080. 36 0.061 13
(CS419354) Sequence 68 from Patent WO2006094836. 36 0.061 13
(AC006280) Plasmodium falciparum chromosome 12 clone PFYAC72... 34 0.074 10
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.089 13
(AC073832) Homo sapiens chromosome 5 clone RP11-144M16, WORK... 42 0.12 3
(AC107890) Homo sapiens chromosome 8, clone RP11-709P2, comp... 36 0.12 8
(CU914380) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.13 6
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 36 0.14 11
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 34 0.14 11
(EK391011) 1095469502308 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.14 2
(AC178809) Strongylocentrotus purpuratus clone R3-29J10, WOR... 50 0.15 1
(CP000821) Shewanella sediminis HAW-EB3, complete genome. 50 0.15 1
(AY380567) Biomphalaria glabrata strain M-line mitochondrion... 34 0.17 4
(AY380531) Biomphalaria glabrata strain 1742 mitochondrion, ... 34 0.17 4
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 32 0.18 15
(CU302223) Zebrafish DNA sequence from clone CH73-58A17 in l... 38 0.19 8
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 34 0.19 11
(AC189353) Brassica rapa subsp. pekinensis clone KBrB043L15,... 34 0.20 7
(CJ443922) Macaca fascicularis mRNA, clone: QccE-21502, 5' e... 32 0.21 4
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 38 0.22 16
(AM433272) Vitis vinifera contig VV78X096440.7, whole genome... 46 0.22 3
(AC084110) Arabidopsis thaliana chromosome 1 BAC F27G20 geno... 42 0.22 5
(CR405703) Zebrafish DNA sequence from clone DKEYP-52E4 in l... 32 0.23 5
(AM432204) Vitis vinifera contig VV78X029622.2, whole genome... 42 0.24 2
(AC022249) Homo sapiens clone RP11-24G14, WORKING DRAFT SEQU... 34 0.27 8
(BJ336795) Dictyostelium discoideum cDNA clone:dda55m01, 5' ... 42 0.27 2
(AL354821) Human DNA sequence from clone RP11-538N17 on chro... 34 0.28 10
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 34 0.29 12
(DB742818) Apis mellifera head cDNA, RIKEN full-length enric... 44 0.30 2
(DB742976) Apis mellifera head cDNA, RIKEN full-length enric... 44 0.31 2
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 0.31 12
(AC068823) Homo sapiens chromosome 15 clone RP11-514B13 map ... 38 0.33 2
(AC090984) Homo sapiens chromosome 15, clone RP11-500C12, co... 38 0.34 2
(AC025242) Homo sapiens chromosome 15 clone RP11-500C12, WOR... 38 0.34 2
(AC046168) Homo sapiens chromosome 15, clone RP11-307C19, co... 38 0.34 2
(AC159627) Mus musculus BAC clone RP24-202P24 from chromosom... 34 0.34 2
(AM449533) Vitis vinifera, whole genome shotgun sequence, co... 38 0.38 2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 32 0.38 14
(AL844506) Plasmodium falciparum chromosome 7. 36 0.38 15
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 36 0.38 12
(AY237631) Cryptosporidium sp. EGK1 internal transcribed spa... 42 0.39 2
(CU928230) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.40 7
(DX599343) ZMMBBb0296E13.fq ZMMBB_VAL Zea mays genomic clone... 46 0.41 2
(AP010406) Lotus japonicus genomic DNA, chromosome 3, clone:... 38 0.41 7
(CU639464) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.42 6
(EJ327147) 1092963396147 Global-Ocean-Sampling_GS-28-01-01-1... 36 0.44 2
(CU849067) A BAC library has been constructed from PN40024 g... 38 0.44 2
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 38 0.45 10
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 0.46 11
(AC022731) Homo sapiens chromosome 8, clone RP11-382J12, com... 36 0.46 6
(AC212929) Populus trichocarpa clone POP068-E20, complete se... 36 0.49 7
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 0.51 10
(AC187866) Populus trichocarpa clone Pop1-7B1, complete sequ... 34 0.53 8
(AX344559) Sequence 10 from Patent WO0200932. 40 0.55 12
(EK096419) 1092962039904 Global-Ocean-Sampling_GS-31-01-01-1... 30 0.58 4
(AC157859) Papio anubis clone RP41-412M2, WORKING DRAFT SEQU... 36 0.58 6
(AM468287) Vitis vinifera contig VV78X169457.16, whole genom... 48 0.60 1
(CQ602573) Sequence 30331 from Patent WO0171042. 48 0.60 1
(CQ591107) Sequence 18865 from Patent WO0171042. 48 0.60 1
(BT021962) Drosophila melanogaster LD03464 full insert cDNA. 48 0.60 1
(AE013599) Drosophila melanogaster chromosome 2R, complete s... 48 0.60 1
(AC007476) Drosophila melanogaster, chromosome 2R, region 49... 48 0.60 1
(AC007440) Drosophila melanogaster, chromosome 2R, region 49... 48 0.60 1
(AC024475) Homo sapiens chromosome 11, clone RP11-702F3, com... 48 0.60 1
(AC139403) Homo sapiens chromosome 15 clone RP13-143I1 map 1... 48 0.60 1
(AC178775) Strongylocentrotus purpuratus clone R3-19P02, WOR... 48 0.60 1
(AC170123) Bos taurus clone CH240-237M17, WORKING DRAFT SEQU... 48 0.60 1
(AC013098) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 48 0.60 1
(FI412938) CH322-140H02.y CHORI-322 Drosophila melanogaster ... 48 0.60 1
(FI278768) LL07849 piggyBac Transposon Insertion Sites Droso... 48 0.60 1
(CL635265) CH243-10A14.T7 CHORI-243 Ovis aries genomic clone... 48 0.60 1
(AA803439) GM13172.5prime GM Drosophila melanogaster ovary p... 48 0.60 1
(AW941524) LD03464.3prime LD Drosophila melanogaster embryo ... 48 0.60 1
(AC212619) Solanum lycopersicum chromosome 7 clone C07HBa004... 36 0.62 7
(CP001056) Clostridium botulinum B str. Eklund 17B, complete... 36 0.65 17
(AL133265) Human DNA sequence *** SEQUENCING CANCELLED *** f... 42 0.66 4
(AC220747) Bos taurus clone CH240-347O24, WORKING DRAFT SEQU... 42 0.69 8
(AX344564) Sequence 15 from Patent WO0200932. 32 0.72 15
(AC220755) Bos taurus clone CH240-348C23, WORKING DRAFT SEQU... 36 0.72 4
(AC023603) Homo sapiens chromosome 3p clone RP11-330o14, WOR... 40 0.77 5
(CT489971) A BAC library has been constructed from cultivar ... 32 0.78 3
(CT737394) Pan troglodytes chromosome X clone PTB-130F19 map... 38 0.80 6
(AC026343) Homo sapiens 3 BAC RP11-384F7 (Roswell Park Cance... 36 0.81 7
(AC112733) Rattus norvegicus clone CH230-75B20, *** SEQUENCI... 36 0.82 9
(DQ347960) Glycine max clone GM24D13, *** SEQUENCING IN PROG... 40 0.85 4
(FB571381) Sequence 248 from Patent EP1865317. 32 0.92 11
(AC022032) Homo sapiens chromosome 8 clone RP11-133E24 map 8... 36 0.93 6
(AC145187) Bos taurus clone RP42-30M12, WORKING DRAFT SEQUEN... 36 0.94 4
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g... 34 0.97 18
(BJ370062) Dictyostelium discoideum cDNA clone:ddc52b05, 5' ... 40 1.0 2
(CU525306) H.melpomene DNA sequence from clone AEHM-13H8. 34 1.0 7
(AC214597) Populus trichocarpa clone POP037-E17, complete se... 36 1.0 5
(CU929659) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.0 8
(AC009840) Drosophila melanogaster 3L BAC RP98-2B14 (Roswell... 44 1.0 4
(CU856021) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 1.0 5
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 32 1.1 11
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 1.1 11
(BJ416029) Dictyostelium discoideum cDNA clone:ddv24k17, 5' ... 38 1.1 2
(AX345368) Sequence 439 from Patent WO0200928. 34 1.1 5
(CT998536) Pan troglodytes chromosome X clone CH251-41D18 ma... 38 1.1 5
(AC174685) Bos taurus clone CH240-411J13, WORKING DRAFT SEQU... 42 1.1 5
(CU466461) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.1 5
(Z95325) Human DNA sequence from clone RP1-287L14 on chromos... 34 1.1 7
(FP102341) H.melpomene DNA sequence from clone AEHM-31J7. 34 1.2 9
(AC217721) Solanum tuberosum chromosome 1 clone RH092C10, **... 36 1.2 7
(AL627094) Zebrafish DNA sequence from clone RP71-PACKTRZ in... 42 1.2 4
(AM604808) Entamoeba invadens IP1 GSS, clone inv042a01.q1k. 42 1.2 2
(AC217588) Populus trichocarpa clone POP047-P10, complete se... 36 1.3 2
(FP236152) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 1.3 8
(BJ394086) Dictyostelium discoideum cDNA clone:dds33b20, 5' ... 38 1.3 2
(AC151452) Dasypus novemcinctus clone VMRC5-31I17, WORKING D... 36 1.3 6
(AM463419) Vitis vinifera contig VV78X272673.7, whole genome... 32 1.3 2
(CR759948) Zebrafish DNA sequence from clone DKEYP-122B2 in ... 34 1.3 2
(BJ396644) Dictyostelium discoideum cDNA clone:dds43n08, 5' ... 38 1.3 2
(AC171863) Bos taurus clone CH240-306B8, WORKING DRAFT SEQUE... 36 1.4 6
(AM487663) Vitis vinifera contig VV78X108905.4, whole genome... 34 1.4 2
(AX344566) Sequence 17 from Patent WO0200932. 36 1.5 12
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1. 36 1.5 13
(BX664614) Zebrafish DNA sequence from clone DKEY-148H10 in ... 34 1.5 9
(AM453076) Vitis vinifera contig VV78X073932.4, whole genome... 32 1.6 2
(AC027451) Homo sapiens chromosome 8, clone RP11-696P8, comp... 40 1.6 6
(AC104582) Homo sapiens chromosome 8, clone RP11-1101K5, com... 36 1.6 8
(AL935045) Zebrafish DNA sequence from clone CH211-183M1. 40 1.6 5
(AC154501) Mus musculus BAC clone RP24-87F14 from chromosome... 38 1.6 5
(EJ031515) 1095454048426 Global-Ocean-Sampling_GS-26-01-01-1... 42 1.7 2
(CT009724) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 1.7 5
(AL034559) Plasmodium falciparum MAL3P7. 32 1.8 13
(CJ453272) Macaca fascicularis mRNA, clone: QflA-18963, 5' e... 38 1.8 2
(AM483377) Vitis vinifera contig VV78X170955.3, whole genome... 32 1.8 3
(AP005363) Homo sapiens genomic DNA, chromosome 8q23, clone:... 36 1.8 7
(AC179041) Strongylocentrotus purpuratus clone R3-4005C07, W... 38 1.9 7
(CG180402) PUJEM31TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 36 1.9 2
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 36 1.9 11
(CJ450851) Macaca fascicularis mRNA, clone: QflA-16433, 5' e... 38 1.9 2
(AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 34 1.9 7
(CZ528302) SRAA-aac54e03.b1 Strongyloides ratti whole genome... 38 2.0 2
(BX548032) Zebrafish DNA sequence from clone CH211-145G9 in ... 32 2.0 9
(AB016871) Arabidopsis thaliana genomic DNA, chromosome 5, T... 42 2.0 7
(AC067895) Homo sapiens chromosome 4 clone RP11-225K11 map 4... 36 2.1 5
(AL844509) Plasmodium falciparum chromosome 13. 34 2.1 14
(AC149719) Bos taurus clone CH240-249K12, WORKING DRAFT SEQU... 40 2.2 6
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8... 32 2.2 9
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 32 2.2 12
(BX530079) Zebrafish DNA sequence from clone DKEY-51A16 in l... 42 2.2 5
(BX537129) Zebrafish DNA sequence from clone CH211-236I20 in... 44 2.2 5
(EJ920996) 1093018634579 Global-Ocean-Sampling_GS-30-02-01-1... 38 2.3 2
(EJ835110) 1093017621432 Global-Ocean-Sampling_GS-30-02-01-1... 38 2.3 2
(AC147822) Xenopus (Silurana) tropicalis clone CH216-123D2, ... 46 2.4 1
(AC124366) Mus musculus BAC clone RP24-541E9 from chromosome... 46 2.4 1
(AL450309) Human DNA sequence from clone RP11-478H16 on chro... 46 2.4 1
(AC207609) Homo sapiens FOSMID clone ABC9-41260300L5 from ch... 46 2.4 1
(AC008064) Homo sapiens BAC clone RP11-178E24 from 2, comple... 46 2.4 1
(AC135629) Homo sapiens chromosome 17 clone RP11-31B8 map 17... 46 2.4 1
(AC095772) Rattus norvegicus clone CH230-9J20, *** SEQUENCIN... 46 2.4 1
(FP236144) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.4 1
(CU929520) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.4 1
(CU915717) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.4 1
(AC092433) Homo sapiens chromosome 2 clone RP11-117G20, WORK... 46 2.4 1
(CT583682) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.4 1
(AC187471) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 46 2.4 1
(AC025315) Homo sapiens chromosome 11 clone RP11-201I15 map ... 46 2.4 1
(AZ299739) RPCI-23-99C14.TV RPCI-23 Mus musculus genomic clo... 46 2.4 1
(AZ238447) RPCI-23-34K18.TV RPCI-23 Mus musculus genomic clo... 46 2.4 1
(EJ069247) 1095458070075 Global-Ocean-Sampling_GS-26-01-01-1... 46 2.4 1
(CG693405) ZMMBBb0296E13.f ZMMBBb Zea mays subsp. mays genom... 46 2.4 1
(EC389221) H12_H12gm3l24_pDNRf_491395 Myzus persicae, line G... 46 2.4 1
(DY315268) AGENCOURT_66923898 NIH_MGC_365 Rattus norvegicus ... 46 2.4 1
(DW722690) CC_080TE_FL04_H10 80-day-old common carp testis (... 46 2.4 1
(DW362433) MpW-XVII-C12 MpW Myzus persicae cDNA 5', mRNA seq... 46 2.4 1
(DW015016) w9p8_M13F Myzus persicae, tobacco lineage, whole ... 46 2.4 1
(DW014473) w8g19_M13F Myzus persicae, tobacco lineage, whole... 46 2.4 1
(CK763093) aam01-6ms3-b01 Aam01 Acorus americanus cDNA clone... 46 2.4 1
(BU129382) 603115249F1 CSEQCHL20 Gallus gallus cDNA clone Ch... 46 2.4 1
(BX321918) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 2.4 5
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 30 2.5 13
(EJ295078) 1095388030701 Global-Ocean-Sampling_GS-27-01-01-1... 32 2.5 3
(AC175679) Bos taurus clone CH240-381L3, WORKING DRAFT SEQUE... 38 2.5 7
(FB571326) Sequence 193 from Patent EP1865317. 30 2.5 11
(AP002436) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 40 2.5 5
(AP007685) Lotus japonicus genomic DNA, chromosome 1, clone:... 36 2.6 5
(CR382401) Plasmodium falciparum chromosome 6, complete sequ... 36 2.6 13
(AP007293) Lotus japonicus genomic DNA, chromosome 1, clone:... 40 2.6 4
(AC096717) Homo sapiens BAC clone RP11-10O3 from 4, complete... 38 2.6 4
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 38 2.6 18
(CJ451883) Macaca fascicularis mRNA, clone: QflA-17514, 5' e... 32 2.7 3
(AC164436) Mus musculus BAC clone RP23-134C5 from chromosome... 34 2.7 7
(AC110696) Rattus norvegicus clone CH230-106N21, WORKING DRA... 36 2.7 7
(CU693375) Zebrafish DNA sequence from clone CH211-59P9 in l... 34 2.8 6
(ET031271) MUGQ_CH252P332F05T7_GL530_027 CHORI-252 Vervet Mo... 34 2.8 3
(AL844587) Zebrafish DNA sequence from clone DKEY-7E14 in li... 38 2.8 8
(ET031319) MUGQ_CH252P332H05T7_GL530_025 CHORI-252 Vervet Mo... 34 2.8 3
(AC149575) Populus trichocarpa clone Pop1-41G18, complete se... 34 3.0 6
(DQ372942) Methanococcus voltae putative GMP synthase (MVO17... 34 3.0 4
(AC151503) Dasypus novemcinctus clone VMRC5-293N7, WORKING D... 36 3.0 5
(AC007767) Sequence of BAC F5D14 from Arabidopsis thaliana c... 42 3.0 5
(CR790385) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 3.1 9
(CU914541) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.1 7
(CR388015) Zebrafish DNA sequence from clone DKEY-246L21 in ... 38 3.1 7
(AC213936) Equus caballus clone CH241-226I13, WORKING DRAFT ... 34 3.2 7
(AP010454) Lotus japonicus genomic DNA, chromosome 4, clone:... 34 3.2 6
(AC114406) Mus musculus chromosome 14, clone RP23-8P18, comp... 38 3.3 6
(CR854991) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 3.3 6
(AC210132) Populus trichocarpa clone POP011-D09, complete se... 32 3.3 7
(CP000728) Clostridium botulinum F str. Langeland, complete ... 34 3.3 14
(AL138697) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 3.4 9
(AL929346) Zebrafish DNA sequence from clone DKEY-38P12. 34 3.4 7
(AC168460) Strongylocentrotus purpuratus clone R3-35H9, WORK... 34 3.5 7
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 34 3.5 10
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 34 3.5 14
(AL713976) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 40 3.5 9
(AC084757) Homo sapiens chromosome 15 clone RP11-227D13 map ... 36 3.7 6
(CU928845) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 3.7 9
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co... 38 3.7 11
(ER296360) 1092343649707 Global-Ocean-Sampling_GS-34-01-01-1... 38 3.8 3
(AC022204) Homo sapiens chromosome 8 clone RP11-535F5, WORKI... 36 3.8 7
(FP236374) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.9 7
(AC010451) Homo sapiens chromosome 5 clone CTD-2247C11, comp... 40 3.9 6
(AC017582) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 38 3.9 5
(AX344555) Sequence 6 from Patent WO0200932. 34 4.1 11
(AC093085) Homo sapiens BAC clone RP11-732M2 from 2, complet... 40 4.1 5
(CU640402) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 4.1 6
(CU464182) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 4.1 2
(CU695285) Brassica rapa subsp. pekinensis clone KBrH005H12,... 34 4.2 6
(AC159494) Bos taurus clone CH240-73F14, WORKING DRAFT SEQUE... 40 4.3 8
(AC209107) Populus trichocarpa clone POP088-K16, complete se... 34 4.3 7
(CR792436) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 4.4 2
(BX538351) Cryptosporidium parvum chromosome 6, complete seq... 36 4.4 10
(AC167785) Glycine max clone gmw2-2o24, WORKING DRAFT SEQUEN... 32 4.4 2
(AM437317) Vitis vinifera contig VV78X122307.2, whole genome... 36 4.4 4
(BX005361) Zebrafish DNA sequence from clone DKEY-19C8 in li... 34 4.5 2
(CR450702) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 4.5 2
(CR855304) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 4.5 2
(AM441169) Vitis vinifera contig VV78X100540.4, whole genome... 38 4.5 2
(BX005374) Zebrafish DNA sequence from clone DKEY-29H23 in l... 34 4.5 2
(BX901890) Zebrafish DNA sequence from clone DKEY-265J11. 34 4.5 2
(BX005399) Zebrafish DNA sequence from clone DKEY-3D16 in li... 34 4.5 2
(AC108052) Homo sapiens BAC clone RP11-335K21 from 4, comple... 36 4.5 7
(BX511087) Zebrafish DNA sequence from clone DKEY-261O7 in l... 34 4.5 2
(CU138491) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.5 2
(BX005286) Zebrafish DNA sequence from clone DKEY-237I9 in l... 34 4.5 2
(CR388050) Zebrafish DNA sequence from clone CH211-287N14 in... 34 4.5 2
(CU137684) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 4.5 2
(AZ711690) RPCI-24-132L23.TJ RPCI-24 Mus musculus genomic cl... 34 4.5 2
(AL133328) Human DNA sequence from clone RP13-21D1 on chromo... 34 4.5 2
(BX247865) Zebrafish DNA sequence from clone CH211-205J13 in... 34 4.5 2
(CU469202) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.5 2
(FP102322) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.5 2
(CR786581) Zebrafish DNA sequence from clone DKEY-179C19 in ... 34 4.5 2
(CR792440) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 4.5 2
(CR450761) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 4.5 2
(CU929513) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.6 2
(BX005283) Zebrafish DNA sequence from clone CH211-93G21 in ... 34 4.6 2
(AC009841) Drosophila melanogaster clone RPCI98-13F11, WORKI... 44 4.6 3
(BX248083) Zebrafish DNA sequence from clone CH211-255B5 in ... 34 4.6 2
(BX957348) Zebrafish DNA sequence from clone CH211-270P4 in ... 34 4.6 2
(BJ396784) Dictyostelium discoideum cDNA clone:dds43o20, 5' ... 38 4.6 2
(BX510935) Zebrafish DNA sequence from clone DKEY-207L24 in ... 34 4.6 2
(CR848032) Zebrafish DNA sequence from clone DKEY-62K3 in li... 34 4.6 2
(EF710653) Glyptapanteles indiensis clone BAC 2G16, *** SEQU... 34 4.6 2
(BJ337040) Dictyostelium discoideum cDNA clone:dda56e01, 5' ... 38 4.7 2
(FP236516) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 4.7 2
(CU633259) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.7 5
(AC005505) Plasmodium falciparum chromosome 12 clone PFYAC18... 36 4.7 10
(AL773558) Zebrafish DNA sequence from clone CH211-207M11 in... 38 4.8 7
(CR392335) Zebrafish DNA sequence from clone CH211-161C21 in... 34 4.8 5
(AC156318) Bos taurus clone CH240-51F24, WORKING DRAFT SEQUE... 38 4.8 6
(CU914534) Zebrafish DNA sequence from clone CH73-275E13 in ... 34 4.8 2
(CU138487) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 4.9 6
(CU179641) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 4.9 5
(AP010365) Lotus japonicus genomic DNA, chromosome 3, clone:... 38 4.9 6
(CU855786) Zebrafish DNA sequence from clone CH1073-504D15 i... 34 5.0 2
(CU746927) A BAC library has been constructed from PN40024 g... 36 5.1 2
(AC168877) Bos taurus clone CH240-204G14, WORKING DRAFT SEQU... 36 5.3 5
(AC010031) Drosophila melanogaster 3L BAC RP98-2M20 (Roswell... 38 5.3 6
(AL356495) Human DNA sequence from clone RP11-206L1 on chrom... 40 5.4 6
(AC225964) Sus scrofa clone RP44-431N14, WORKING DRAFT SEQUE... 38 5.5 5
(AC125675) Rattus norvegicus clone CH230-237O17, WORKING DRA... 36 5.5 4
(AM475593) Vitis vinifera contig VV78X118841.8, whole genome... 32 5.6 2
(BJ394075) Dictyostelium discoideum cDNA clone:dds33o16, 5' ... 38 5.6 2
(AC171131) Helobdella robusta clone CH306-1A2, complete sequ... 34 5.6 6
(AC171127) Helobdella robusta clone CH306-1A1, complete sequ... 34 5.6 6
(FF563106) TT1B262TV Tetrahymena thermophila SB210 cDNA libr... 42 5.7 2
(AC148203) Callicebus moloch clone LB5-190B16, complete sequ... 38 5.7 3
(CD649896) CvGil00601 Crassostrea virginica Gill Crassostrea... 36 5.7 2
(AC196377) Macaca mulatta clone CH250-126G11, WORKING DRAFT ... 38 5.7 3
(AC141342) Rattus norvegicus clone CH230-432G19, *** SEQUENC... 36 5.7 3
(AC119503) Rattus norvegicus clone CH230-243I22, WORKING DRA... 38 5.8 3
(AC079055) Homo sapiens clone RP11-164M22, WORKING DRAFT SEQ... 36 5.8 5
(CT030718) Zebrafish DNA sequence from clone DKEYP-12H3 in l... 40 5.9 6
(AC012081) Homo sapiens 3 BAC RP11-416O18 (Roswell Park Canc... 36 5.9 6
(DX537923) GH_MBb0077F12f GH_MBb Gossypium hirsutum genomic ... 34 5.9 2
(EF506945) Leptosira terrestris UTEX 333 chloroplast, comple... 38 5.9 9
(EK068948) 1092960164997 Global-Ocean-Sampling_GS-31-01-01-1... 36 6.0 2
(AC179022) Strongylocentrotus purpuratus clone R3-1108F02, W... 42 6.0 4
(CT056626) Sus scrofa genomic clone PigE-124E8, genomic surv... 34 6.0 2
(CT472222) Sus scrofa genomic clone CH242-517B11, genomic su... 34 6.0 2
(ER627486) 1093018294897 Global-Ocean-Sampling_GS-36-01-01-2... 34 6.0 2
(CZ541896) SRAA-aad40h11.b1 Strongyloides ratti whole genome... 34 6.0 2
(CT086007) Sus scrofa genomic clone CH242-134D12, genomic su... 34 6.1 2
(EI716209) 2B421008O07TF BAC library from breast tumor sampl... 34 6.2 2
(AC117487) Homo sapiens 3 BAC CTD-2017B15 (CalTech Human BAC... 38 6.3 2
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 40 6.4 18
(ED117932) AUAC-aav99d01.b1 Ascaris suum whole genome shotgu... 34 6.4 2
(AC126480) Rattus norvegicus clone CH230-78H9, WORKING DRAFT... 38 6.5 4
(AC094031) Rattus norvegicus clone CH230-53K20, *** SEQUENCI... 36 6.5 6
(AL139135) Human DNA sequence from clone RP11-463J7 on chrom... 36 6.5 7
(CR558302) Zebrafish DNA sequence from clone DKEY-33M11 in l... 34 6.6 8
(DX415487) MUGQ_CH252P028C14Sp6_GL401_013 CHORI-252 Vervet M... 36 6.6 2
(CP001301) Borrelia garinii PBr plasmid PBr_lp25, complete s... 32 6.7 6
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 36 6.7 17
(AC097454) Homo sapiens BAC clone RP11-2F17 from 4, complete... 32 6.7 8
(CU463860) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 6.7 8
(EJ694680) 1092956014481 Global-Ocean-Sampling_GS-30-02-01-1... 42 6.8 2
(EJ033449) 1095454060505 Global-Ocean-Sampling_GS-26-01-01-1... 36 6.8 2
(FB571325) Sequence 192 from Patent EP1865317. 32 6.8 11
(AC109384) Rattus norvegicus clone CH230-61L13, *** SEQUENCI... 34 6.8 8
(CJ449667) Macaca fascicularis mRNA, clone: QflA-15191, 5' e... 40 6.9 2
(CJ447671) Macaca fascicularis mRNA, clone: QflA-13014, 5' e... 36 7.0 2
(DD010735) Diagnosis of known genetic Parameters within the ... 34 7.0 17
(AC172883) Brassica rapa subsp. pekinensis clone KBrH125N23,... 38 7.0 6
(CR396583) Zebrafish DNA sequence from clone DKEY-157G20 in ... 34 7.1 5
(CW795608) WiscDsLox450F06 Arabidopsis thaliana T-DNA insert... 40 7.1 2
(AC027383) Homo sapiens chromosome 1 clone RP11-579J20 map 1... 36 7.2 4
(EJ844655) 1093017850106 Global-Ocean-Sampling_GS-30-02-01-1... 42 7.2 2
(AC093502) Drosophila melanogaster 3L BAC RP98-48C4 (Roswell... 38 7.3 4
(BH673613) BOMCV47TR BO_2_3_KB Brassica oleracea genomic clo... 36 7.4 3
(AC002486) Homo sapiens BAC clone CTA-367O17 from 7, complet... 36 7.4 6
(EK212331) 1095460103142 Global-Ocean-Sampling_GS-31-01-01-1... 34 7.4 2
(EJ890282) 1093018438542 Global-Ocean-Sampling_GS-30-02-01-1... 42 7.5 2
(EJ927834) 1093018789774 Global-Ocean-Sampling_GS-30-02-01-1... 42 7.5 2
(DU968621) 376915 Tomato MboI BAC Library Solanum lycopersic... 38 7.5 2
(CU062563) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 7.5 6
(CU181895) Zebrafish DNA sequence from clone CH73-147D22 in ... 38 7.6 3
(AC060766) Homo sapiens chromosome 17, clone RP11-686D22, co... 36 7.6 4
(FG298824) 1108793322617 New World Screwworm Larvae 9387 EST... 40 7.6 2
(CP000049) Borrelia turicatae 91E135, complete genome. 32 7.6 15
(AC121950) Mus musculus BAC clone RP24-216M19 from 6, comple... 40 7.8 4
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 32 7.8 11
(AC225004) Bos taurus clone CH240-469H6, WORKING DRAFT SEQUE... 34 7.8 6
(AC013616) Homo sapiens clone RP11-10N3, WORKING DRAFT SEQUE... 38 7.8 4
(CU972423) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 7.9 8
(AC027385) Homo sapiens chromosome 21 clone RP11-304D2 map 2... 36 7.9 6
(CU570788) Zebrafish DNA sequence from clone CH73-299H12 in ... 36 7.9 4
(AM434875) Vitis vinifera contig VV78X103687.3, whole genome... 34 8.0 3
(FG288903) 1108793290867 New World Screwworm Egg 9261 ESTs C... 40 8.0 2
(FG284134) 1108770655964 New World Screwworm Egg 9261 ESTs C... 40 8.1 2
(AM479051) Vitis vinifera, whole genome shotgun sequence, co... 36 8.1 3
(CU464162) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 8.2 7
(EI284267) GM_WBc0003F05.r GM_WBc Glycine max genomic clone ... 32 8.2 3
(AC055788) Homo sapiens chromosome 8, clone RP11-252H14, com... 36 8.2 6
(BX842663) Mouse DNA sequence from clone RP23-176P20 on chro... 36 8.3 6
(FG286010) 1108770710794 New World Screwworm Egg 9261 ESTs C... 40 8.3 2
(DQ630521) Stigeoclonium helveticum strain UTEX 441 chloropl... 32 8.4 7
(FG283449) 1108770613909 New World Screwworm Egg 9261 ESTs C... 40 8.4 2
(AX346271) Sequence 1342 from Patent WO0200928. 30 8.5 5
(AC182540) Ateles geoffroyi clone UC1-338I2, complete sequence. 38 8.5 5
(AM630974) Entamoeba dispar GSS, clone dispar62e07.p1k. 32 8.5 3
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 36 8.7 11
(CS468836) Sequence 27 from Patent EP1748080. 32 8.7 7
(CS468835) Sequence 26 from Patent EP1748080. 32 8.7 7
(CS419313) Sequence 27 from Patent WO2006094836. 32 8.7 7
(CS419312) Sequence 26 from Patent WO2006094836. 32 8.7 7
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 32 8.8 13
(AB262389) Bombyx mori BMWCP5, BMWCP4, BMWCP3, BMWCP2 genes ... 36 8.9 6
(CJ463286) Macaca fascicularis mRNA, clone: QnpA-11465, 5' e... 32 9.0 3
(AX344550) Sequence 1 from Patent WO0200932. 30 9.0 13
(AC199750) Heliconius erato clone BBAM-27D18, WORKING DRAFT ... 34 9.0 8
(AB053519) Carabus estreicheri mitochondrial gene for NADH d... 36 9.0 2
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 36 9.1 10
(ER423612) 1092963732835 Global-Ocean-Sampling_GS-35-01-01-1... 32 9.2 3
(AC178090) Strongylocentrotus purpuratus clone R3-3067F23, W... 42 9.2 6
(EV831866) FTSBG14TF Tetrahymena thermophila SB210 cDNA libr... 34 9.2 3
(CU459019) Zebrafish DNA sequence from clone CH1073-448D1 in... 44 9.4 1
(CT573464) Zebrafish DNA sequence from clone DKEY-112N9 in l... 44 9.4 1
(CR376829) Zebrafish DNA sequence from clone CH211-218I18 in... 44 9.4 1
(BX322604) Zebrafish DNA sequence from clone DKEY-10N19 in l... 44 9.4 1
(BX322536) Zebrafish DNA sequence from clone DKEY-174K12 in ... 44 9.4 1
(AC160129) Mus musculus BAC clone RP23-253N17 from chromosom... 44 9.4 1
(AC157910) Mus musculus chromosome 18, clone RP24-372A6, com... 44 9.4 1
(AC120339) Mus musculus chromosome 14, clone RP23-126A8, com... 44 9.4 1
(AC218138) MACACA MULATTA BAC clone CH250-234C9 from chromos... 44 9.4 1
(AC209790) MACACA MULATTA BAC clone CH250-536L15 from chromo... 44 9.4 1
(AC198664) Pan troglodytes BAC clone CH251-644C21 from chrom... 44 9.4 1
(AP008211) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.4 1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.4 1
(AP004078) Oryza sativa Japonica Group genomic DNA, chromoso... 44 9.4 1
(AC209531) Medicago truncatula chromosome 2 BAC clone mth2-1... 44 9.4 1
(AC188782) Solanum lycopersicum cv. Heinz 1706, chromosome 5... 44 9.4 1
(AC144736) Oryza sativa (japonica cultivar-group) chromosome... 44 9.4 1
(EA679993) Sequence 58872 from patent US 7365185. 44 9.4 1
(DL068437) Cancer Gene Determination and Therapeutic Screeni... 44 9.4 1
(DL067812) Cancer Gene Determination and Therapeutic Screeni... 44 9.4 1
(DL066030) Cancer Gene Determination and Therapeutic Screeni... 44 9.4 1
(DL061533) Cancer Gene Determination and Therapeutic Screeni... 44 9.4 1
(DJ492564) The method of determining the risk of urinary cal... 44 9.4 1
(DD147230) The method of collecting the data for predicting ... 44 9.4 1
(CS301554) Sequence 1 from Patent EP1666611. 44 9.4 1
(CQ613082) Sequence 40840 from Patent WO0171042. 44 9.4 1
(BD035299) Sequence tag and encoded human protein. 44 9.4 1
(AX899766) Sequence 15629 from Patent EP1033401. 44 9.4 1
(AX337041) Sequence 7550 from Patent WO0194629. 44 9.4 1
(AX336416) Sequence 6925 from Patent WO0194629. 44 9.4 1
(AX334634) Sequence 5143 from Patent WO0194629. 44 9.4 1
(AX330137) Sequence 646 from Patent WO0194629. 44 9.4 1
(GC700989) Sequence 16234 from patent US 6812339. 44 9.4 1
(GC697739) Sequence 12984 from patent US 6812339. 44 9.4 1
(GC697738) Sequence 12983 from patent US 6812339. 44 9.4 1
(GC697737) Sequence 12982 from patent US 6812339. 44 9.4 1
(GC696589) Sequence 11833 from patent US 6812339. 44 9.4 1
(AR961160) Sequence 15629 from patent US 7115416. 44 9.4 1
(AR735560) Sequence 15629 from patent US 6783961. 44 9.4 1
(AR514051) Sequence 19011 from patent US 6703491. 44 9.4 1
(AR498769) Sequence 3729 from patent US 6703491. 44 9.4 1
(Z30974) Caenorhabditis elegans Cosmid K08E5. 44 9.4 1
(AE014296) Drosophila melanogaster chromosome 3L, complete s... 44 9.4 1
(S78410) hOPN=osteopontin {promoter} [human, Genomic, 2200 nt]. 44 9.4 1
(D14813) Homo sapiens gene for osteopontin, complete cds. 44 9.4 1
(DQ384483) Homo sapiens clone fa0533 genomic sequence. 44 9.4 1
(AP000844) Homo sapiens genomic DNA, chromosome 11q clone:RP... 44 9.4 1
(AL513479) Human DNA sequence from clone RP11-329N22 on chro... 44 9.4 1
(AL451071) Human chromosome 14 DNA sequence BAC R-779M2 of l... 44 9.4 1
(AL390800) Human chromosome 14 DNA sequence BAC R-254B15 of ... 44 9.4 1
(AL359263) Human DNA sequence from clone RP13-88F20 on chrom... 44 9.4 1
(AL163283) Homo sapiens chromosome 21 segment HS21C083. 44 9.4 1
(AL132670) Human DNA sequence from clone RP1-90G1 on chromos... 44 9.4 1
(AL078587) Human DNA sequence from clone RP4-760C5 on chromo... 44 9.4 1
(AF043945) Homo sapiens chromosome 21 clone PAC 39C17 map 21... 44 9.4 1
(AF001548) Human Chromosome 16 BAC clone CIT987SK-A-815A9, c... 44 9.4 1
(AC131944) Homo sapiens BAC clone CTD-2285E13 from 4, comple... 44 9.4 1
(AC091838) Homo sapiens chromosome 5 clone CTD-2105K20, comp... 44 9.4 1
(AC068185) Homo sapiens chromosome 11, clone RP11-330I10, co... 44 9.4 1
(AC068130) Homo sapiens BAC clone RP11-640F22 from 2, comple... 44 9.4 1
(AC067843) Homo sapiens chromosome 8, clone RP11-645E10, com... 44 9.4 1
(AC053466) Homo sapiens chromosome 10 clone RP11-491G3, comp... 44 9.4 1
(AC023955) Homo sapiens chromosome 8, clone RP11-153B5, comp... 44 9.4 1
(AC022690) Homo sapiens chromosome 8, clone RP11-480O10, com... 44 9.4 1
(AC009866) Homo sapiens chromosome 11, clone RP11-61E7, comp... 44 9.4 1
(AC008945) Homo sapiens chromosome 5 clone CTD-2325A15, comp... 44 9.4 1
(AC008875) Homo sapiens chromosome 5 clone CTD-2201E18, comp... 44 9.4 1
(AC008180) Homo sapiens 3 BAC RP11-292L5 (Roswell Park Cance... 44 9.4 1
(AC002123) Human BAC clone GS1-312P20 from 5p15.2, complete ... 44 9.4 1
(AC159557) Bos taurus clone CH240-75H7, WORKING DRAFT SEQUEN... 44 9.4 1
(AC146361) Bos taurus clone RP42-384C21, WORKING DRAFT SEQUE... 44 9.4 1
(AC143179) Macaca mulatta clone CH250-269L12, *** SEQUENCING... 44 9.4 1
(AC138050) Felis catus clone RP86-125L17, WORKING DRAFT SEQU... 44 9.4 1
(AC137984) Oryza sativa Japonica Group chromosome 5 clone P0... 44 9.4 1
(AC137916) Felis catus clone RP86-410P5, WORKING DRAFT SEQUE... 44 9.4 1
(AC131963) Rattus norvegicus clone CH230-340L19, WORKING DRA... 44 9.4 1
(AC131838) Rattus norvegicus clone CH230-273G6, WORKING DRAF... 44 9.4 1
(FP236509) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.4 1
(CU929323) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 9.4 1
(AC092759) Papio anubis clone RP41-259J8, WORKING DRAFT SEQU... 44 9.4 1
(AC092527) Papio anubis clone RP41-344N10, WORKING DRAFT SEQ... 44 9.4 1
(AC068055) Homo sapiens chromosome 2 clone RP11-86G8, WORKIN... 44 9.4 1
(AC036118) Homo sapiens clone RP11-159N21, WORKING DRAFT SEQ... 44 9.4 1
(CT737178) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.4 1
(AP002831) Homo sapiens genomic DNA, chromosome 11q clone:RP... 44 9.4 1
(AP000932) Homo sapiens genomic DNA, chromosome 11q25 clone:... 44 9.4 1
(AP000800) Homo sapiens genomic DNA, chromosome 11q25 clone:... 44 9.4 1
(AL358052) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 9.4 1
(AC223039) Bos taurus clone CH240-431K8, WORKING DRAFT SEQUE... 44 9.4 1
(AC220247) Bos taurus clone CH240-367H16, WORKING DRAFT SEQU... 44 9.4 1
(AC185911) Bos taurus clone RP42-128L15, WORKING DRAFT SEQUE... 44 9.4 1
(AC182057) Bos taurus clone CH240-329H17, WORKING DRAFT SEQU... 44 9.4 1
(AC180733) Strongylocentrotus purpuratus clone R3-3083M22, W... 44 9.4 1
(AC170763) Macaca mulatta clone CH250-337E7, WORKING DRAFT S... 44 9.4 1
(AC170564) Bos taurus clone CH240-241C1, WORKING DRAFT SEQUE... 44 9.4 1
(AC166406) Bos taurus clone CH240-68N11, WORKING DRAFT SEQUE... 44 9.4 1
(AC024688) Homo sapiens chromosome 1 clone RP11-207A8 map 1,... 44 9.4 1
(AC014082) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 9.4 1
(AY812123) Schistosoma japonicum SJCHGC06890 protein mRNA, p... 44 9.4 1

>(BJ341542) Dictyostelium discoideum cDNA clone:dda7h04, 3' end,
single read.
Length = 782

Score = 1435 bits (724), Expect = 0.0
Identities = 724/724 (100%)
Strand = Plus / Minus


Query: 130 tcggtatggtattaattatggtttcaattgtatggattggtcaatactttagaagaaata 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tcggtatggtattaattatggtttcaattgtatggattggtcaatactttagaagaaata 723


Query: 190 aattaaatggttgggtaattgaatgtttaattttgataatgattctatcattaatgtcta 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 aattaaatggttgggtaattgaatgtttaattttgataatgattctatcattaatgtcta 663


Query: 250 tatttttatatacattaaattggatttatataatttataatttaccacttggtaaaaata 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tatttttatatacattaaattggatttatataatttataatttaccacttggtaaaaata 603


Query: 310 tttttgaaattgcaaattgggtttatgttttagcaaagaatttatttttcttattgttaa 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tttttgaaattgcaaattgggtttatgttttagcaaagaatttatttttcttattgttaa 543


Query: 370 tttatgctggtcaaggttggacaacatcaatttattctaagtcaaaattaagaaattgta 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tttatgctggtcaaggttggacaacatcaatttattctaagtcaaaattaagaaattgta 483


Query: 430 tcaatatattcttaattgtatttaatatttcattgggatggtcattaagttatatttatg 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcaatatattcttaattgtatttaatatttcattgggatggtcattaagttatatttatg 423


Query: 490 attattcgaaaccagatattagaccatacaattattatttagattgtttacctggatact 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 attattcgaaaccagatattagaccatacaattattatttagattgtttacctggatact 363


Query: 550 tttcttatgttgcatacggcttattaacggtctattttatttattgcaatataatttcct 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tttcttatgttgcatacggcttattaacggtctattttatttattgcaatataatttcct 303


Query: 610 atagatcattaaatgatgctgagccggctagaaaaacatttttaaaaattttcacattgg 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atagatcattaaatgatgctgagccggctagaaaaacatttttaaaaattttcacattgg 243


Query: 670 ttttctcaatatatatgttgagtccgattttggttggtatcatctcccatttccttgtgg 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttttctcaatatatatgttgagtccgattttggttggtatcatctcccatttccttgtgg 183


Query: 730 attatatgaaattcaaagtttcaactataatgaatcacactttggatttcatattttaca 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 attatatgaaattcaaagtttcaactataatgaatcacactttggatttcatattttaca 123


Query: 790 ttactctaatggtgttctataggcctacagctggaaatattttagtaacaaaattagtaa 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ttactctaatggtgttctataggcctacagctggaaatattttagtaacaaaattagtaa 63


Query: 850 accc 853
||||
Sbjct: 62 accc 59

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,202,582,283
Number of extensions: 83314472
Number of successful extensions: 8180787
Number of sequences better than 10.0: 556
Length of query: 919
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 895
Effective length of database: 99,340,224,878
Effective search space: 88909501265810
Effective search space used: 88909501265810
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.10
Homology vs Protein
Query= Contig-U00011-1 (Contig-U00011-1Q) /CSM_Contig/Contig-U00011-1Q.Seq.d
(919 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC117070_6(AC117070|pid:none) Dictyostelium discoideum chromosom... 74 9e-12
CP000849_1104(CP000849|pid:none) Rickettsia bellii OSU 85-389, c... 44 0.010
CP001332_137(CP001332|pid:none) Micromonas sp. RCC299 chromosome... 43 0.013
CP000087_360(CP000087|pid:none) Rickettsia bellii RML369-C, comp... 43 0.013
AY312991_4(AY312991|pid:none) Alvinella pompejana epibiont 7G3 f... 40 0.084
EF043402_12(EF043402|pid:none) Heterorhabditis bacteriophora str... 37 0.71
CR931691_13(CR931691|pid:none) Streptococcus pneumoniae strain n... 37 0.93
CP000853_2204(CP000853|pid:none) Alkaliphilus oremlandii OhILAs,... 37 0.93
BX293980_593(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi... 36 1.6
BA000023_1789(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA,... 36 1.6
DQ927304_24(DQ927304|pid:none) Tetrahymena paravorax strain RP m... 36 2.1
CP000517_802(CP000517|pid:none) Lactobacillus helveticus DPC 457... 36 2.1
(Q54BI3) RecName: Full=LIMR family protein DDB_G0293610; 36 2.1
DQ927305_30(DQ927305|pid:none) Tetrahymena pigmentosa strain UM1... 35 2.7
CP001348_3283(CP001348|pid:none) Clostridium cellulolyticum H10,... 35 2.7
AL844505_255(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 35 2.7
CR382401_2(CR382401|pid:none) Plasmodium falciparum chromosome 6... 35 2.7
AP009180_169(AP009180|pid:none) Candidatus Carsonella ruddii PV ... 35 3.5
CP000777_2856(CP000777|pid:none) Leptospira biflexa serovar Pato... 35 3.5
CP000033_886(CP000033|pid:none) Lactobacillus acidophilus NCFM, ... 35 4.6
AJ617723_3(AJ617723|pid:none) Staphylococcus aureus agrD gene, a... 35 4.6
BA000033_1962(BA000033|pid:none) Staphylococcus aureus subsp. au... 35 4.6
AY673996_59(AY673996|pid:none) Gracilaria tenuistipitata var. li... 35 4.6
BT046014_1(BT046014|pid:none) Salmo salar clone ssal-rgf-539-123... 35 4.6
AJ617720_3(AJ617720|pid:none) Staphylococcus aureus agrD gene, a... 35 4.6
AJ617721_3(AJ617721|pid:none) Staphylococcus aureus agrD gene, a... 35 4.6
AY144994_1(AY144994|pid:none) Saccharomyces kluyveri clone P2191... 35 4.6
A86783(A86783) glycosyl transferase ymjE [imported] - Lactococcu... 35 4.6
(P61243) RecName: Full=Protein ycf2; &AP005672_45(AP005672|pid:... 35 4.7
AJ417718_12(AJ417718|pid:none) Ancylostoma duodenale complete mi... 34 6.1
CP000349_142(CP000349|pid:none) Leptospira borgpetersenii serova... 34 6.1
AL844507_54(AL844507|pid:none) Plasmodium falciparum 3D7 chromos... 34 6.1
AB501205_7(AB501205|pid:none) Apaturina erminea mitochondrial CO... 34 6.1
AL111168_1483(AL111168|pid:none) Campylobacter jejuni subsp. jej... 34 7.9
DQ927304_11(DQ927304|pid:none) Tetrahymena paravorax strain RP m... 34 7.9
BC118234_1(BC118234|pid:none) Bos taurus transmembrane protein 1... 34 7.9
CP000413_374(CP000413|pid:none) Lactobacillus gasseri ATCC 33323... 34 7.9

>AC117070_6(AC117070|pid:none) Dictyostelium discoideum chromosome 2
map 2097701-2233941 strain AX4, complete sequence.
Length = 394

Score = 73.6 bits (179), Expect = 9e-12
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 10/194 (5%)
Frame = +3

Query: 309 IFEIANWVYVLAKN-LFFLLLIYAGQGW-TTSIYSKSKLRNCINIFLIVFNIS------- 461
IF I +V+ N LF LL+I QGW S + K F I+FN +
Sbjct: 182 IFFILVFVFTFTSNSLFSLLIINISQGWGLISDFGKR--------FAIIFNCAIFFSTEI 233

Query: 462 LGWSLSYIYDYSKPDIRPYNYYLDCLPGYFSYVAYGLLTVYFIYCNIISYRSLNDAEPAR 641
LG S + S+ Y GY GL YFI+ N I + +L + +
Sbjct: 234 LGLSAYLVESNSQFYGGEYRNPFKSNVGYVLIAIQGLTIFYFIFSNKI-FSNLISTDQYQ 292

Query: 642 KTFLKIFTLVFSIYMLSPILVGIISHFLVDY-MKFKVSTIMNHTLDFIFYITLMVFYRPT 818
++FL F ++FSI+++S + IIS F+VD +F + +I+N + + IFY+ ++ Y P
Sbjct: 293 QSFLVKFKIIFSIWIISIPISEIISIFIVDNNFRFSLFSIINDSFNLIFYLLIIYIYHPC 352

Query: 819 AGNILVTKLVNPYN 860
NILV +L + Y+
Sbjct: 353 KSNILVKRLNSYYD 366

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,286,368,628
Number of extensions: 25323505
Number of successful extensions: 56038
Number of sequences better than 10.0: 37
Number of HSP's gapped: 55934
Number of HSP's successfully gapped: 37
Length of query: 306
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 178
Effective length of database: 636,901,312
Effective search space: 113368433536
Effective search space used: 113368433536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.91 gvh: 0.43 alm: 0.18 top: 0.13 tms: 0.40 mit: 0.27 mip: 0.22
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

28.0 %: plasma membrane
28.0 %: endoplasmic reticulum
16.0 %: mitochondrial
12.0 %: nuclear
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for Contig-U00011-1 is pla

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 10
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0