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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04372-1
Contig ID Contig-U04372-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04372-1 (Contig-U04372-1Q) /CSM_Contig/Contig-U04372-1Q.Seq.d
CAATAATCAAATTAACAATAATGAAAATAATAATTTAGCAACATCATTAA
GTTCATTAAATATTAATAATAATAATAATAATAATAATATTAATATTACT
CCCNATAATAATAATCAAAATATATTAAAATATGCTATTCATCTTAGATT
TATATGTGTGAAAAAAAGAAAATACTATTTATATAAAAATATTAGAGTTG
TTTTTCCAAATAGAATGCCAGATGAAATGGAAAAATTAAAAATTATTTAC
GCATAC
Gap no gap
Contig length 256
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3506704
End point 3506960
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U04372
List of clone(s) 

est1=SSA345F,1,257
Translated Amino Acid sequence 
NNQINNNENNNLATSLSSLNINNNNNNNNINITPXNNNQNILKYAIHLRFICVKKRKYYL
YKNIRVVFPNRMPDEMEKLKIIYAY
Translated Amino Acid sequence (All Frames) 
Frame A:
q*sn*q**k**fsniikfiky********y*yysx***skyikicyss*iymcekkkilf
i*ky*scfsk*nar*ngkiknylri


Frame B:
NNQINNNENNNLATSLSSLNINNNNNNNNINITPXNNNQNILKYAIHLRFICVKKRKYYL
YKNIRVVFPNRMPDEMEKLKIIYAY


Frame C:
iikltimkiii*qhh*vh*iliiiiiiiilillpiiiikiy*nmlfildlyv*kkentiy
ikilelffqiecqmkwkn*klfth
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04372-1 (Contig-U04372-1Q)
/CSM_Contig/Contig-U04372-1Q.Seq.d
         (256 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04372-1 (Contig-U04372-1Q) /CSM_Contig/Conti...   220  6e-58
Contig-U10605-1 (Contig-U10605-1Q) /CSM_Contig/Conti...    46  2e-05
Contig-U05050-1 (Contig-U05050-1Q) /CSM_Contig/Conti...    42  3e-04
Contig-U11851-1 (Contig-U11851-1Q) /CSM_Contig/Conti...    40  0.001
Contig-U11503-1 (Contig-U11503-1Q) /CSM_Contig/Conti...    40  0.001
Contig-U10413-1 (Contig-U10413-1Q) /CSM_Contig/Conti...    40  0.001
Contig-U09143-1 (Contig-U09143-1Q) /CSM_Contig/Conti...    40  0.001
Contig-U07963-1 (Contig-U07963-1Q) /CSM_Contig/Conti...    38  0.004
Contig-U14255-1 (Contig-U14255-1Q) /CSM_Contig/Conti...    36  0.017
Contig-U14003-1 (Contig-U14003-1Q) /CSM_Contig/Conti...    36  0.017

>Contig-U04372-1 (Contig-U04372-1Q) /CSM_Contig/Contig-U04372-1Q.Seq.d
          Length = 256

 Score =  220 bits (111), Expect = 6e-58
 Identities = 125/132 (94%)
 Strand = Plus / Plus

                                                                       
Query: 125 ttaaaatatgctattcatcttagatttatatgtgtgnnnnnnngaaaatactatttatat 184
           ||||||||||||||||||||||||||||||||||||       |||||||||||||||||
Sbjct: 125 ttaaaatatgctattcatcttagatttatatgtgtgaaaaaaagaaaatactatttatat 184

                                                                       
Query: 185 aaaaatattagagttgtttttccaaatagaatgccagatgaaatggaaaaattaaaaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aaaaatattagagttgtttttccaaatagaatgccagatgaaatggaaaaattaaaaatt 244

                       
Query: 245 atttacgcatac 256
           ||||||||||||
Sbjct: 245 atttacgcatac 256


 Score =  111 bits (56), Expect = 4e-25
 Identities = 56/56 (100%)
 Strand = Plus / Plus

                                                                  
Query: 1  caataatcaaattaacaataatgaaaataataatttagcaacatcattaagttcat 56
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  caataatcaaattaacaataatgaaaataataatttagcaacatcattaagttcat 56


>Contig-U10605-1 (Contig-U10605-1Q) /CSM_Contig/Contig-U10605-1Q.Seq.d
          Length = 510

 Score = 46.1 bits (23), Expect = 2e-05
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 4   taatcaaattaacaataatgaaaataataat 34
           |||||||| ||| ||||||||||||||||||
Sbjct: 171 taatcaaaataataataatgaaaataataat 201


 Score = 36.2 bits (18), Expect = 0.017
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 17  aataatgaaaataataat 34
           ||||||||||||||||||
Sbjct: 208 aataatgaaaataataat 225


>Contig-U05050-1 (Contig-U05050-1Q) /CSM_Contig/Contig-U05050-1Q.Seq.d
          Length = 842

 Score = 42.1 bits (21), Expect = 3e-04
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 14  aacaataatgaaaataataat 34
           |||||||||||||||||||||
Sbjct: 659 aacaataatgaaaataataat 639


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7742
Number of Sequences: 6905
Number of extensions: 7742
Number of successful extensions: 3241
Number of sequences better than 10.0: 518
length of query: 256
length of database: 5,674,871
effective HSP length: 15
effective length of query: 241
effective length of database: 5,571,296
effective search space: 1342682336
effective search space used: 1342682336
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.18
Homology vs DNA 
Query= Contig-U04372-1 (Contig-U04372-1Q) /CSM_Contig/Contig-U04372-1Q.Seq.d
         (256 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU072596) Dictyostelium discoideum slug cDNA, clone SSA345.      145   6e-41  2
(EK422408) 1095515523479 Global-Ocean-Sampling_GS-31-01-01-1...    34   0.12   2
(FI258412) CccaBb036-B7JR CccABb Cajanus cajan genomic clone...    38   0.12   2
(FI232800) CccaBb010-L3JR CccABb Cajanus cajan genomic clone...    38   0.12   2
(AL385221) Medicago truncatula EST MtBC27B06R1 : T7 end of c...    34   0.12   2
(AM463758) Vitis vinifera, whole genome shotgun sequence, co...    48   0.16   1
(AL356800) Human chromosome 14 DNA sequence BAC R-97N10 of l...    48   0.16   1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    44   0.20   4
(DQ207726) Aspergillus niger strain N909 mitochondrion, comp...    46   0.29   2
(CP000095) Prochlorococcus marinus str. NATL2A, complete gen...    34   0.31   2
(AL161545) Arabidopsis thaliana DNA chromosome 4, contig fra...    40   0.42   2
(Z97342) Arabidopsis thaliana DNA chromosome 4, ESSA I FCA c...    40   0.42   2
(FG284787) 1108770681778 New World Screwworm Egg 9261 ESTs C...    34   0.45   2
(FG284779) 1108770681765 New World Screwworm Egg 9261 ESTs C...    34   0.45   2
(AF126324) Chonocephalus heymonsi isolate M 12S ribosomal RN...    34   0.47   2
(AF126313) Chonocephalus heymonsi isolate N 12S ribosomal RN...    34   0.47   2
(AC150993) Bos taurus  BAC CH240-186K21 (Children's Hospital...    36   0.50   3
(ER405216) 1095356004163 Global-Ocean-Sampling_GS-34-01-01-1...    42   0.53   2
(ER386648) 1094426018236 Global-Ocean-Sampling_GS-34-01-01-1...    42   0.55   2
(EJ868631) 1093018298937 Global-Ocean-Sampling_GS-30-02-01-1...    42   0.57   2
(EJ878774) 1093018384764 Global-Ocean-Sampling_GS-30-02-01-1...    42   0.60   2
(AC188992) Callithrix jacchus BAC clone CH259-34H12 from chr...    46   0.62   1
(AM474204) Vitis vinifera contig VV78X230753.8, whole genome...    46   0.62   1
(EI741646) CHORI5148E15TR BAC library from the primary breas...    46   0.62   1
(DX538340) GH_MBb0090I04r GH_MBb Gossypium hirsutum genomic ...    46   0.62   1
(FD343874) CBPN24635.g1 CBPN: Subtracted channel catfish cDN...    46   0.62   1
(CP000660) Pyrobaculum arsenaticum DSM 13514, complete genome.     42   0.92   2
(AC214551) Pan troglodytes BAC clone CH251-547A11 from chrom...    32   1.3    2
(AC204628) Zea mays chromosome 9 clone CH201-245O2; ZMMBBc02...    32   1.3    2
(AC146030) Pan troglodytes BAC clone RP43-124E21 from chromo...    32   1.3    2
(AC073468) Homo sapiens BAC clone RP11-405I21 from 7, comple...    32   1.3    2
(ER971829) AF__Bc0053J11f AF__Bc Aquilegia formosa genomic, ...    32   1.6    2
(AF303440) Rheum sublanceolatum tRNA-Leu (trnL) gene and trn...    32   1.7    2
(CD362459) AGENCOURT_14238774 NICHD_XGC_Brn1 Xenopus laevis ...    34   1.7    2
(CB180288) AGENCOURT_11382489 NICHD_XGC_Tad1 Xenopus laevis ...    34   1.7    2
(EY176642) CBTI5633.g1_A18.ab1:P Triphysaria pusilla root ti...    34   1.7    2
(EW964946) BRHL_02_D14_T7 Headlice composite library with al...    34   1.7    2
(BG551896) dd21b07.y1 Wellcome CRC pSK St 10 5 Xenopus laevi...    34   1.8    2
(EJ766311) 1092963263606 Global-Ocean-Sampling_GS-30-02-01-1...    36   2.0    2
(ER350471) 1092346004209 Global-Ocean-Sampling_GS-34-01-01-1...    36   2.0    2
(AE017157) Chlamydophila pneumoniae TW-183, section 1 of 4 o...    42   2.2    2
(AC157993) Mus musculus chromosome 1, clone RP23-74E8, compl...    44   2.4    1
(AC118196) Mus musculus chromosome 1, clone RP23-354J2, comp...    44   2.4    1
(AC110257) Mus musculus chromosome 3, clone RP23-276I11, com...    44   2.4    1
(AP008208) Oryza sativa (japonica cultivar-group) genomic DN...    44   2.4    1
(AP004857) Oryza sativa Japonica Group genomic DNA, chromoso...    44   2.4    1
(EA701787) Sequence 80666 from patent US 7365185.                  44   2.4    1
(AC092583) Homo sapiens BAC clone RP11-19B22 from 2, complet...    44   2.4    1
(AC130963) Medicago truncatula chromosome 6 clone mth2-36c15...    44   2.4    1
(AC090462) Homo sapiens chromosome 8 clone RP11-108B8 map 8,...    44   2.4    1
(AC225490) Medicago truncatula clone mth2-3k13, WORKING DRAF...    44   2.4    1
(AZ686697) ENTIC84TF Entamoeba histolytica Sheared DNA Entam...    44   2.4    1
(AZ681123) ENTLH59TR Entamoeba histolytica Sheared DNA Entam...    44   2.4    1
(AZ676373) ENTIH38TF Entamoeba histolytica Sheared DNA Entam...    44   2.4    1
(EJ409940) 1093012132235 Global-Ocean-Sampling_GS-28-01-01-1...    44   2.4    1
(EJ343434) 1092963532053 Global-Ocean-Sampling_GS-28-01-01-1...    44   2.4    1
(EJ154453) 1092343796239 Global-Ocean-Sampling_GS-27-01-01-1...    44   2.4    1
(CG878932) ZMMBBb0499F01f ZMMBBb (HindIII) Zea mays subsp. m...    44   2.4    1
(CE085552) tigr-gss-dog-17000359011288 Dog Library Canis lup...    44   2.4    1
(AG320704) Mus musculus molossinus DNA, clone:MSMg01-106L01....    44   2.4    1
(AG282367) Mus musculus molossinus DNA, clone:MSMg01-054G21....    44   2.4    1
(EB255113) CNSN01-C-007411-501 Normalized CNS library (juven...    44   2.4    1
(AM424728) Vitis vinifera contig VV78X141985.3, whole genome...    34   3.3    2
(AC212626) Solanum lycopersicum chromosome 7 clone C07HBa007...    40   3.6    2
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    32   3.8    2
(BJ421994) Dictyostelium discoideum cDNA clone:ddv44a18, 5' ...    34   4.4    2
(AC143050) Macaca mulatta clone CH250-267I9, *** SEQUENCING ...    30   4.5    2
(CU151857) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   4.6    2
(FP015921) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   4.6    2
(AC090346) Homo sapiens chromosome 18 clone RP11-824D7 map 1...    30   4.6    2
(AC022031) Homo sapiens chromosome 18, clone RP11-397A16, co...    30   4.6    2
(AP001457) Homo sapiens genomic DNA, chromosome 18q21 clone:...    30   4.6    2
(FP090911) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   4.6    2
(BJ371155) Dictyostelium discoideum cDNA clone:ddc56j23, 5' ...    34   4.6    2
(AP001373) Homo sapiens genomic DNA, chromosome 18q21 clone:...    30   4.7    2
(AC007859) Homo sapiens, clone RP11-41A1, complete sequence.       30   4.7    2
(AC141707) Apis mellifera clone CH224-56H8, WORKING DRAFT SE...    38   4.8    2
(AC090383) Homo sapiens chromosome 18, clone RP11-727C1, com...    30   4.8    2
(FC812703) Sr_pASP6_011m05_SP6 S. ratti mixed stage pAMP Str...    38   4.8    2
(EA645108) Sequence 23987 from patent US 7365185.                  32   5.1    2
(BJ365598) Dictyostelium discoideum cDNA clone:ddc35m20, 5' ...    34   5.2    2
(BJ420657) Dictyostelium discoideum cDNA clone:ddv40c06, 5' ...    34   5.5    2
(CT841536) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   5.5    2
(AM470078) Vitis vinifera contig VV78X151540.10, whole genom...    30   5.8    2
(EJ311774) 1095403013892 Global-Ocean-Sampling_GS-27-01-01-1...    38   5.8    2
(FC818353) Sr_pAMT7_011l15_T7 S. ratti mixed stage pAMP Stro...    38   5.9    2
(FC818368) Sr_pAMT7_011m07_T7 S. ratti mixed stage pAMP Stro...    38   5.9    2
(ER969675) AF__Bc0033N19r AF__Bc Aquilegia formosa genomic, ...    32   6.1    2
(DX522575) GH_MBb0047K08r GH_MBb Gossypium hirsutum genomic ...    30   6.1    2
(AF044861) Eurema nicippe large subunit ribosomal RNA gene, ...    30   6.1    2
(AC211507) Homo sapiens BAC clone CH17-20M4 from chromosome ...    36   6.1    2
(CL010432) ZMMBBb0553P15f ZMMBBb (HindIII) Zea mays subsp. m...    30   6.2    2
(ET010203) MUGQ_CH252P312A19T7_CP567_080 CHORI-252 Vervet Mo...    30   6.2    2
(AJ785654) Zygaena chirazica eckweileri partial mitochondria...    32   6.3    2
(AC211539) Homo sapiens BAC clone CH17-130G7 from chromosome...    36   6.5    2
(FC812705) Sr_pASP6_011m07_SP6 S. ratti mixed stage pAMP Str...    38   6.6    2
(FC812693) Sr_pASP6_011l15_SP6 S. ratti mixed stage pAMP Str...    38   6.6    2
(AC224044) Bos taurus clone CH240-451L4, WORKING DRAFT SEQUE...    38   6.8    3
(FC816358) Sr_pAMT7_05o11_T7 S. ratti mixed stage pAMP Stron...    38   7.0    2
(FI226535) CccaBa042-B6TV CccABa Cajanus cajan genomic clone...    36   7.1    2
(ER335126) 1092344299024 Global-Ocean-Sampling_GS-34-01-01-1...    32   7.3    2
(EJ204748) 1092344332159 Global-Ocean-Sampling_GS-27-01-01-1...    32   7.3    2
(EK225256) 1095460156240 Global-Ocean-Sampling_GS-31-01-01-1...    32   7.7    2
(EJ968247) 1093022060570 Global-Ocean-Sampling_GS-30-02-01-1...    32   7.8    2
(AC210137) Populus trichocarpa clone POP109-O13, complete se...    42   7.9    3
(AL357792) Human DNA sequence *** SEQUENCING CANCELLED *** f...    34   8.0    3
(EJ462937) 1093023092008 Global-Ocean-Sampling_GS-28-01-01-1...    38   8.1    2
(AC160478) Bos taurus clone CH240-94P14, WORKING DRAFT SEQUE...    42   8.5    3
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    34   8.9    3
(AC024843) Caenorhabditis elegans cosmid Y61A9LA, complete s...    38   9.1    2
(CT990606) Zebrafish DNA sequence from clone CH211-271L9 in ...    42   9.7    1
(CR392341) Zebrafish DNA sequence from clone CH211-222E20 in...    42   9.7    1
(BX296525) Zebrafish DNA sequence from clone CH211-252F24 in...    42   9.7    1
(BX004831) Zebrafish DNA sequence from clone BUSM1-143H6 in ...    42   9.7    1
(BX001033) Zebrafish DNA sequence from clone CH211-286F4 in ...    42   9.7    1
(AC144713) Danio rerio clone CH211-6O1, complete sequence.         42   9.7    1
(BV262955) S235P696FD6.T0 ItalianGreyhound Canis familiaris ...    42   9.7    1
(BS000075) Pan troglodytes chromosome 22 clone:RP43-111A01, ...    42   9.7    1
(AP006161) Oryza sativa Japonica Group genomic DNA, chromoso...    42   9.7    1
(AF035536) Spinacia oleracea cold acclimation protein (CAP16...    42   9.7    1
(AF035535) Spinacia oleracea cold acclimation protein (CAP16...    42   9.7    1
(AC151673) Medicago truncatula chromosome 8 clone mth2-2k12,...    42   9.7    1
(AC125481) Medicago truncatula clone mth2-15n13, complete se...    42   9.7    1
(GC559021) Sequence 2732 from patent US 7416862.                   42   9.7    1
(FB318691) Sequence 1 from Patent EP1854885.                       42   9.7    1
(EA076186) Sequence 3544 from patent US 7183083.                   42   9.7    1
(DI004811) Chlamydia pneumoniae genomic sequence and polypep...    42   9.7    1
(CS598541) Sequence 1 from Patent EP1792995.                       42   9.7    1
(AX300389) Sequence 1 from Patent WO0185972.                       42   9.7    1
(AX145344) Sequence 4066 from Patent WO0134809.                    42   9.7    1
(AR935503) Sequence 1 from patent US 7101963.                      42   9.7    1
(AR889883) Sequence 3544 from patent US 7060458.                   42   9.7    1
(AR607478) Sequence 1 from patent US 6822071.                      42   9.7    1
(AR485980) Sequence 4066 from patent US 6703492.                   42   9.7    1
(AR310754) Sequence 1 from patent US 6559294.                      42   9.7    1
(AR058188) Sequence 3 from patent US 5837545.                      42   9.7    1
(Z81463) Caenorhabditis elegans Cosmid C06B8.                      42   9.7    1
(U21308) Caenorhabditis elegans cosmid ZK1290, complete sequ...    42   9.7    1
(AL772363) Human DNA sequence from clone RP11-974F22 on chro...    42   9.7    1
(AL390793) Human DNA sequence from clone RP13-192B13 on chro...    42   9.7    1
(AC096522) Rattus norvegicus clone CH230-191H24, *** SEQUENC...    42   9.7    1
(FP017141) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.7    1
(CU914359) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.7    1
(CU896606) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.7    1
(CU862058) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.7    1
(CU467595) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.7    1
(CT997804) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   9.7    1
(CT030138) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    42   9.7    1
(CT030047) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    42   9.7    1
(AC224551) Bos taurus clone CH240-482G3, WORKING DRAFT SEQUE...    42   9.7    1
(AC208848) Zea mays chromosome 5 clone CH201-402E12; ZMMBBc0...    42   9.7    1
(AC187907) Zea mays chromosome 5 clone CH201-158O18; ZMMBBc0...    42   9.7    1
(AC181972) Medicago truncatula chromosome 8 clone mth2-43h18...    42   9.7    1
(AC173571) Bos taurus clone CH240-526G1, WORKING DRAFT SEQUE...    42   9.7    1
(AC173382) Bos taurus clone CH240-524C16, WORKING DRAFT SEQU...    42   9.7    1
(AZ691837) ENTKL72TF Entamoeba histolytica Sheared DNA Entam...    42   9.7    1
(AQ742336) HS_5383_B2_H02_SP6 RPCI-11 Human Male BAC Library...    42   9.7    1
(FH665429) CHO_OF5012xf09r1.ab1 CHO_OF5 Nicotiana tabacum ge...    42   9.7    1
(FH548264) CHO_OF4782xn12r1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   9.7    1
(FH548207) CHO_OF4782xn12f1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   9.7    1
(FH344043) CHO_OF4631xm11f1.ab1 CHO_OF4 Nicotiana tabacum ge...    42   9.7    1
(ET973094) CHO_OF704xn04r1.ab1 CHO_OF Nicotiana tabacum geno...    42   9.7    1
(ET835796) CHO_OF585xl14f2.ab1 CHO_OF Nicotiana tabacum geno...    42   9.7    1
(ER450226) 1092963846862 Global-Ocean-Sampling_GS-35-01-01-1...    42   9.7    1
(ER419458) 1092963694439 Global-Ocean-Sampling_GS-35-01-01-1...    42   9.7    1
(ER392978) 1095337030049 Global-Ocean-Sampling_GS-34-01-01-1...    42   9.7    1
(ER349663) 1092346000808 Global-Ocean-Sampling_GS-34-01-01-1...    42   9.7    1
(EK417116) 1095515471429 Global-Ocean-Sampling_GS-31-01-01-1...    42   9.7    1
(EK414909) 1095506186740 Global-Ocean-Sampling_GS-31-01-01-1...    42   9.7    1
(EK408314) 1095505102009 Global-Ocean-Sampling_GS-31-01-01-1...    42   9.7    1
(EK348521) 1095467613595 Global-Ocean-Sampling_GS-31-01-01-1...    42   9.7    1
(EK306667) 1095462383414 Global-Ocean-Sampling_GS-31-01-01-1...    42   9.7    1
(EK247599) 1095460264760 Global-Ocean-Sampling_GS-31-01-01-1...    42   9.7    1
(EK184382) 1095458138415 Global-Ocean-Sampling_GS-31-01-01-1...    42   9.7    1
(EJ945839) 1093018912777 Global-Ocean-Sampling_GS-30-02-01-1...    42   9.7    1
(EJ839982) 1093017824786 Global-Ocean-Sampling_GS-30-02-01-1...    42   9.7    1
(EJ465940) 1095403007842 Global-Ocean-Sampling_GS-28-01-01-1...    42   9.7    1
(EJ184247) 1092344142934 Global-Ocean-Sampling_GS-27-01-01-1...    42   9.7    1
(EJ122632) 1092343380597 Global-Ocean-Sampling_GS-27-01-01-1...    42   9.7    1
(DH414859) Oryzias latipes Fosmid clone:GOLWFno822_j09, reve...    42   9.7    1
(CZ932694) 252557 Tomato EcoRI BAC Library Solanum lycopersi...    42   9.7    1
(CZ430606) OA_BBa0097K03.f OA_BBa Oryza alta genomic clone O...    42   9.7    1
(CG684688) ZMMBBc0160H23f ZMMBBc (EcoRI) Zea mays subsp. may...    42   9.7    1
(CG091519) PUIIA49TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    42   9.7    1
(CG028406) CHGAO82TR CHGA Cleome hassleriana genomic clone C...    42   9.7    1
(BZ716145) OGEAB21TM ZM_0.7_1.5_KB Zea mays genomic clone ZM...    42   9.7    1
(BZ716136) OGEAB21TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    42   9.7    1
(BZ538663) OGAEN32TC ZM2_0.7_1.5_KB Zea mays genomic clone Z...    42   9.7    1
(EG558185) CR02015D08 Leaf CR02 cDNA library Catharanthus ro...    42   9.7    1
(DC864563) Samia cynthia ricini cDNA, clone: I09A02NGRL0006_...    42   9.7    1
(DC860543) Samia cynthia ricini cDNA, clone: S13A01NGRL0007_...    42   9.7    1
(CU603428) Theobroma cacao, mRNA sequence (KZ0AAR1YG13).           42   9.7    1
(CB564461) AGENCOURT_13320532 NICHD_XGC_Tad2 Xenopus laevis ...    42   9.7    1
(BU133013) 603121579F1 CSEQCHL22 Gallus gallus cDNA clone Ch...    42   9.7    1
(FL576541) cembMI0173 cDNA library from leaves of Gossypium ...    42   9.7    1
(FE937003) AHAI-aaa44b03.b2 Pristionchus_pacificus_AHAI1_EST...    42   9.7    1
(AW466289) SWAMCAC21E09SK Brugia malayi adult male cDNA (SAW...    42   9.7    1
(EU497962) Streptococcus equinus bovicin HJ50 biosynthesis g...    42   9.7    1
(BA000023) Sulfolobus tokodaii str. 7 DNA, complete genome.        42   9.7    1
(BA000008) Chlamydophila pneumoniae J138 genomic DNA, comple...    42   9.7    1
(AF270026) Staphylococcus epidermidis strain SR1 clone step....    42   9.7    1
(AE015929) Staphylococcus epidermidis ATCC 12228, complete g...    42   9.7    1
(AE002161) Chlamydophila pneumoniae AR39, complete genome.         42   9.7    1
(AE001363) Chlamydophila pneumoniae CWL029, complete genome.       42   9.7    1
(AB232046) Streptococcus thermophilus tepA gene for thermoph...    42   9.7    1

>(AU072596) Dictyostelium discoideum slug cDNA, clone SSA345.
          Length = 240

 Score =  145 bits (73), Expect(2) = 6e-41
 Identities = 73/73 (100%)
 Strand = Plus / Plus


Query: 168 gaaaatactatttatataaaaatattagagttgtttttccaaatagaatgccagatgaaa 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gaaaatactatttatataaaaatattagagttgtttttccaaatagaatgccagatgaaa 227


Query: 228 tggaaaaattaaa 240
           |||||||||||||
Sbjct: 228 tggaaaaattaaa 240

 Score = 54.0 bits (27), Expect(2) = 6e-41
 Identities = 27/27 (100%)
 Strand = Plus / Plus


Query: 134 gctattcatcttagatttatatgtgtg 160
           |||||||||||||||||||||||||||
Sbjct: 134 gctattcatcttagatttatatgtgtg 160

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 217,711,797
Number of extensions: 17923449
Number of successful extensions: 1993715
Number of sequences better than 10.0: 211
Length of query: 256
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 233
Effective length of database: 99,442,330,388
Effective search space: 23170062980404
Effective search space used: 23170062980404
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04372-1 (Contig-U04372-1Q) /CSM_Contig/Contig-U04372-1Q.Seq.d
         (256 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU638744_368(CU638744|pid:none) Podospora anserina genomic DNA c...    54   2e-06
AM270168_110(AM270168|pid:none) Aspergillus niger contig An08c01...    48   1e-04
AP007161_529(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...    48   1e-04
AB016889_20(AB016889|pid:none) Arabidopsis thaliana genomic DNA,...    41   0.012
AB010072_17(AB010072|pid:none) Arabidopsis thaliana genomic DNA,...    41   0.012
FN392322_848(FN392322|pid:none) Pichia pastoris GS115 chromosome...    39   0.075
BT062097_1(BT062097|pid:none) Zea mays full-length cDNA clone ZM...    37   0.29
EU975257_1(EU975257|pid:none) Zea mays clone 485829 hypothetical...    35   0.64
AK102567_1(AK102567|pid:none) Oryza sativa Japonica Group cDNA c...    34   1.9
AK173161_1(AK173161|pid:none) Mus musculus premature mRNA for mK...    33   4.1
(Q5FW46) RecName: Full=Uncharacterized protein KIAA1370 homolog;...    33   4.1
BC031353_1(BC031353|pid:none) Mus musculus cDNA sequence BC03135...    33   4.1
(Q1LV22) RecName: Full=Uncharacterized protein KIAA1370 homolog;...    33   4.1
AK293920_1(AK293920|pid:none) Homo sapiens cDNA FLJ59489 complet...    33   4.1
AK292917_1(AK292917|pid:none) Homo sapiens cDNA FLJ77246 complet...    33   4.1
BC083498_1(BC083498|pid:none) Homo sapiens KIAA1370, mRNA (cDNA ...    33   4.1
BC109127_1(BC109127|pid:none) Homo sapiens KIAA1370, mRNA (cDNA ...    33   4.1
(Q69ZK7) RecName: Full=Uncharacterized protein KIAA1370;               33   4.1
(Q5ZI58) RecName: Full=Uncharacterized protein KIAA1370 homolog;...    33   4.1
AK159022_1(AK159022|pid:none) Mus musculus visual cortex cDNA, R...    33   4.1
(Q32MH5) RecName: Full=Uncharacterized protein KIAA1370;               33   4.1
BC099042_1(BC099042|pid:none) Xenopus laevis hypothetical protei...    33   4.1
AB037791_1(AB037791|pid:none) Homo sapiens mRNA for KIAA1370 pro...    33   4.1
BC058839_1(BC058839|pid:none) Homo sapiens KIAA1370, mRNA (cDNA ...    33   4.1
BC087525_1(BC087525|pid:none) Xenopus laevis hypothetical LOC496...    32   7.0

>CU638744_368(CU638744|pid:none) Podospora anserina genomic DNA
           chromosome 6, supercontig 2.
          Length = 817

 Score = 53.9 bits (128), Expect = 2e-06
 Identities = 23/39 (58%), Positives = 29/39 (74%)
 Frame = +2

Query: 125 LKYAIHLRFICVKKRKYYLYKNIRVVFPNRMPDEMEKLK 241
           L+Y +HL   C  K +YYLYK+IRVVF NR+PD  EKL+
Sbjct: 630 LRYLVHLHICCPAKGRYYLYKSIRVVFANRVPDGKEKLR 668

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 171,868,033
Number of extensions: 1798625
Number of successful extensions: 3096
Number of sequences better than 10.0: 25
Number of HSP's gapped: 3095
Number of HSP's successfully gapped: 28
Length of query: 85
Length of database: 1,061,185,681
Length adjustment: 55
Effective length of query: 30
Effective length of database: 881,421,041
Effective search space: 26442631230
Effective search space used: 26442631230
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)
PSORT 

 psg: 0.75  gvh: 0.26  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.40  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: nuclear
	 28.0 %: mitochondrial
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for Contig-U04372-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0