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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04515-1
Contig ID Contig-U04515-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U04515-1 (Contig-U04515-1Q) /CSM_Contig/Contig-U04515-1Q.Seq.d
AATACACCACACATTTTATTTTATTTTATTTTATTATTTTTAAAAAATAG
TATTACTATAGAAACAATTATTTTATTATTATTTTGTTTTATAGTTGGAA
AATAAAAAAAAATAAAAATTTATAAAAATGCCAACAACAATCGACGAAGG
TTTACCAGCACCACATAATTTTGTATCTTTTACAACTTTAATAGCAAGAA
AATATCAAAATTTAATTGAAAAAACAATTTCATTCATTCCACAAAGATGG
GCATTTGTTGGTTTTTTATCATTCCTTTATATACTTAGAGTATCATTATC
AAGTGGTGGTTGGTATGTTATTACCTACGCCCTTGGTATATTTCTATTGA
CACGTTTCATTGCATTTTTATCACCAAAATGGGATCCAGAACTTGAAGAA
GATTCAGGTGATTCATTACCAACTACACTCAATAGAAATGATGACGAAGC
AAAACCATTCATTAGAAGATTACCAGAGTTCCTTTTCTGGCACTCAATTT
TCAAAGCATTATTTATTTCAATTTTCTGCACCTTTATTCCATTTTTAGAT
TTACCAGTATTTTGGCCAATTCTTTTATTATATTTCATCATTATCTTTTC
CGTTACTATGAAGAAACAAATTAAACATATGATTAAATATAAATATATTC
CATTCACAGTTGGAAAGAAAACTTATACAAAAAATAATAGCTAATCGTTC
ATACGACGAATAATGCAACAAAACTTTTACAAAAAATAAAAAAAAAAAAT
AAAAAAAAAAAAATAATAATAATAAGATAAGCATATATAATAAATTGTTC
AATTTTTAGTGTGTGAAGCGCTCGACATATTTTATTAAATTAAATTAAAT
CGAATCGAATAAAATAAAAATAAA
Gap no gap
Contig length 874
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1791821
End point 1790947
Strand (PLUS/MINUS) MINUS
Number of clones 3
Number of EST 3
Link to clone list U04515
List of clone(s) 

est1=VSH787E,1,701
est2=SSB213E,51,875
est3=VSE748Z,224,737
Translated Amino Acid sequence 
ihhtfyfilfyyf*kivll*kqlfyyyfvl*lenkkk*KFIKMPTTIDEGLPAPHNFVSF
TTLIARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITYALGIFLLTRFI
AFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFKALFISIFCTFIP
FLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTVGKKTYTKNNS*sfirrimqq
nfykk*kkkikkkk****dkhi**ivqflvcealdify*iklnrie*nknk
Translated Amino Acid sequence (All Frames) 
Frame A:
ntphilfyfillflknsitietiilllfcfivgk*kkikiyknannnrrrftstt*fcif
ynfnskkiskfn*knnfihstkmgicwffiiplyt*siiikwwlvcyylrpwyisidtfh
cifitkmgsrt*rrfr*fitnytq*k**rsktih*kitrvpflalnfqsiiyfnflhlys
ifrftsilansfiifhhylfryyeetn*tyd*i*iysihswkenlykk**livhttnnat
kllqkikkknkkkkiiiir*ayiincsifsv*sarhilln*iksnrik*k*


Frame B:
ihhtfyfilfyyf*kivll*kqlfyyyfvl*lenkkk*KFIKMPTTIDEGLPAPHNFVSF
TTLIARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSGGWYVITYALGIFLLTRFI
AFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLFWHSIFKALFISIFCTFIP
FLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTVGKKTYTKNNS*sfirrimqq
nfykk*kkkikkkk****dkhi**ivqflvcealdify*iklnrie*nknk


Frame C:
ytthfilfyfiifkk*yyyrnnyfiiilfyswkikknknl*kcqqqstkvyqhhiilyll
ql**qeniki*lkkqfhsfhkdghllvfyhsfiyleyhyqvvvgmllptplvyfy*hvsl
hfyhqngiqnlkkiqvihyqlhsiemmtkqnhsledyqssfsgtqfskhylfqfsaplfh
f*iyqyfgqffyyisslsfpll*rnklni*lninifhsqlerkliqkiianrsyde*cnk
tftknkkkk*kkknnnnkisiynklfnf*cvkrstyfikln*iesnkiki
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04515-1 (Contig-U04515-1Q)
/CSM_Contig/Contig-U04515-1Q.Seq.d
         (874 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04515-1 (Contig-U04515-1Q) /CSM_Contig/Conti...  1193  0.0
Contig-U08307-1 (Contig-U08307-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U10800-1 (Contig-U10800-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U09480-1 (Contig-U09480-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U05867-1 (Contig-U05867-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U12658-1 (Contig-U12658-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U05396-1 (Contig-U05396-1Q) /CSM_Contig/Conti...    36  0.062
Contig-U11980-1 (Contig-U11980-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U11794-1 (Contig-U11794-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U11673-1 (Contig-U11673-1Q) /CSM_Contig/Conti...    32  0.96

>Contig-U04515-1 (Contig-U04515-1Q) /CSM_Contig/Contig-U04515-1Q.Seq.d
          Length = 874

 Score = 1193 bits (602), Expect = 0.0
 Identities = 602/602 (100%)
 Strand = Plus / Plus

                                                                       
Query: 129 tgccaacaacaatcgacgaaggtttaccagcaccacataattttgtatcttttacaactt 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tgccaacaacaatcgacgaaggtttaccagcaccacataattttgtatcttttacaactt 188

                                                                       
Query: 189 taatagcaagaaaatatcaaaatttaattgaaaaaacaatttcattcattccacaaagat 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 taatagcaagaaaatatcaaaatttaattgaaaaaacaatttcattcattccacaaagat 248

                                                                       
Query: 249 gggcatttgttggttttttatcattcctttatatacttagagtatcattatcaagtggtg 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gggcatttgttggttttttatcattcctttatatacttagagtatcattatcaagtggtg 308

                                                                       
Query: 309 gttggtatgttattacctacgcccttggtatatttctattgacacgtttcattgcatttt 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gttggtatgttattacctacgcccttggtatatttctattgacacgtttcattgcatttt 368

                                                                       
Query: 369 tatcaccaaaatgggatccagaacttgaagaagattcaggtgattcattaccaactacac 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tatcaccaaaatgggatccagaacttgaagaagattcaggtgattcattaccaactacac 428

                                                                       
Query: 429 tcaatagaaatgatgacgaagcaaaaccattcattagaagattaccagagttccttttct 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tcaatagaaatgatgacgaagcaaaaccattcattagaagattaccagagttccttttct 488

                                                                       
Query: 489 ggcactcaattttcaaagcattatttatttcaattttctgcacctttattccatttttag 548
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ggcactcaattttcaaagcattatttatttcaattttctgcacctttattccatttttag 548

                                                                       
Query: 549 atttaccagtattttggccaattcttttattatatttcatcattatcttttccgttacta 608
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 atttaccagtattttggccaattcttttattatatttcatcattatcttttccgttacta 608

                                                                       
Query: 609 tgaagaaacaaattaaacatatgattaaatataaatatattccattcacagttggaaaga 668
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tgaagaaacaaattaaacatatgattaaatataaatatattccattcacagttggaaaga 668

                                                                       
Query: 669 aaacttatacaaaaaataatagctaatcgttcatacgacgaataatgcaacaaaactttt 728
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 aaacttatacaaaaaataatagctaatcgttcatacgacgaataatgcaacaaaactttt 728

             
Query: 729 ac 730
           ||
Sbjct: 729 ac 730


 Score = 75.8 bits (38), Expect = 7e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 794 attgttcaatttttagtgtgtgaagcgctcgacatatt 831
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 794 attgttcaatttttagtgtgtgaagcgctcgacatatt 831


 Score = 32.2 bits (16), Expect = 0.96
 Identities = 19/20 (95%)
 Strand = Plus / Plus

                               
Query: 668 aaaacttatacaaaaaataa 687
           ||||||| ||||||||||||
Sbjct: 720 aaaacttttacaaaaaataa 739


>Contig-U08307-1 (Contig-U08307-1Q) /CSM_Contig/Contig-U08307-1Q.Seq.d
          Length = 1409

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 533  tttattccatttttagattta 553
            |||||||||||||||||||||
Sbjct: 1280 tttattccatttttagattta 1300


>Contig-U10800-1 (Contig-U10800-1Q) /CSM_Contig/Contig-U10800-1Q.Seq.d
          Length = 1452

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 632 attaaatataaatatattc 650
           |||||||||||||||||||
Sbjct: 79  attaaatataaatatattc 97


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,742
Number of Sequences: 6905
Number of extensions: 12742
Number of successful extensions: 1398
Number of sequences better than 10.0: 133
length of query: 874
length of database: 5,674,871
effective HSP length: 16
effective length of query: 858
effective length of database: 5,564,391
effective search space: 4774247478
effective search space used: 4774247478
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.21
Homology vs DNA 
Query= Contig-U04515-1 (Contig-U04515-1Q) /CSM_Contig/Contig-U04515-1Q.Seq.d
         (874 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU263344) Dictyostelium discoideum vegetative cDNA clone:VS...  1005   0.0    1
(AU037047) Dictyostelium discoideum slug cDNA, clone SSB213.      870   0.0    2
(AJ277590) Dictyostelium discoideum iplA gene for inositol 1...   480   0.0    3
(AU267971) Dictyostelium discoideum vegetative cDNA clone:VS...   654   0.0    1
(AU267972) Dictyostelium discoideum vegetative cDNA clone:VS...   391   e-115  2
(AU071310) Dictyostelium discoideum slug cDNA, clone SSB213.      321   3e-83  1
(FD464361) LARW523TR Haematobia irritans 1st Instar Larvae H...    68   4e-12  2
(FD464301) LARW486TR Haematobia irritans 1st Instar Larvae H...    68   4e-12  2
(FD463729) LARW122TR Haematobia irritans 1st Instar Larvae H...    68   4e-12  2
(FD463728) LARW122TF Haematobia irritans 1st Instar Larvae H...    68   4e-12  2
(FD460892) LARVI23TR Haematobia irritans 1st Instar Larvae H...    68   4e-12  2
(FD465777) LARWD86TR Haematobia irritans 1st Instar Larvae H...    68   4e-12  2
(DC433683) Bombyx mori cDNA, clone:E_FL_epM-_04H10_F_0, 5' e...    42   5e-07  3
(FL640532) TG_34_G6 Termite gut library Reticulitermes flavi...    54   3e-06  2
(FL637901) TG_07_H3 Termite gut library Reticulitermes flavi...    54   3e-06  2
(ES391862) MUS07-F07.x1d-t SHGC-MUS Mytilus californianus cD...    40   2e-05  4
(CK532228) rswga0_011478.y1 swg Bombyx mori cDNA, mRNA seque...    42   4e-05  3
(CK490113) rswab0_008073.y1 swa Bombyx mori cDNA, mRNA seque...    42   4e-05  3
(EB993745) 7434341 CE04 Caenorhabditis elegans cDNA clone 27...    44   0.001  2
(AC102806) Mus musculus chromosome 3, clone RP23-341B15, com...    44   0.002  2
(AZ977703) 2M0253O12R Mouse 10kb plasmid UUGC2M library Mus ...    44   0.002  2
(AZ535245) ENTCP37TR Entamoeba histolytica Sheared DNA Entam...    54   0.002  2
(BH148142) ENTPR75TF Entamoeba histolytica Sheared DNA Entam...    54   0.003  2
(T02054) wEST02775 Early embryo, Stratagene (cat. #937007) C...    44   0.004  2
(AR545166) Sequence 297 from patent US 6747137.                    42   0.004  3
(CB393150) OSTR114F11_1 AD-wrmcDNA Caenorhabditis elegans cD...    44   0.005  2
(EB998281) 7627609 CE04 Caenorhabditis elegans cDNA clone 27...    44   0.006  2
(EB998497) 7404402 CE04 Caenorhabditis elegans cDNA clone 27...    44   0.006  2
(BJ798992) Caenorhabditis elegans cDNA clone:yk1753b01 : 3' ...    44   0.007  2
(BJ144437) Caenorhabditis elegans cDNA clone:yk1207c01 : 3' ...    44   0.007  2
(EH359596) NPAA-aaa26g02.g1 N.brasiliensis_EST_L3A_SL1 Nippo...    46   0.008  2
(FG287049) 1108770728167 New World Screwworm Egg 9261 ESTs C...    46   0.009  2
(FG294927) 1108770721339 New World Screwworm Larvae 9387 EST...    46   0.009  2
(FG289781) 1108793305302 New World Screwworm Egg 9261 ESTs C...    46   0.009  2
(CK096156) UA48BPF09.3pR Populus dormant cambium cDNA librar...    54   0.009  1
(CA930010) MTU2CA.P5.H12 Aspen apex cDNA Library Populus tre...    54   0.009  1
(CA925156) MTU7TL.P14.C04 Aspen leaf cDNA Library Populus tr...    54   0.009  1
(BU819882) UA48BPF09 Populus tremula cambium cDNA library Po...    54   0.009  1
(FG288449) 1108793271723 New World Screwworm Egg 9261 ESTs C...    46   0.010  2
(FG299008) 1108793324740 New World Screwworm Larvae 9387 EST...    46   0.010  2
(FG287310) 1108770738488 New World Screwworm Egg 9261 ESTs C...    46   0.010  2
(FG289390) 1108793297218 New World Screwworm Egg 9261 ESTs C...    46   0.010  2
(FG294575) 1108770716099 New World Screwworm Larvae 9387 EST...    46   0.010  2
(CD082128) MA3-9999U-M330-G01-U.B MA3-0001 Schistosoma manso...    42   0.030  2
(AM045956) Schistosoma mansoni lung schistosomulum EST, clon...    42   0.030  2
(CD075743) MA3-0001U-M330-G01-U.G MA3-0001 Schistosoma manso...    42   0.030  2
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1...    38   0.033  9
(CT030255) Mouse DNA sequence from clone RP23-267P22 on chro...    52   0.037  1
(CT025707) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    52   0.037  1
(GE755969) MUW04-A08.x1d-t SHGC-MUW Mytilus californianus cD...    40   0.053  3
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ...    36   0.077  2
(FF558458) MUSLE83TF MUSL Musa acuminata cDNA 5', mRNA seque...    48   0.081  2
(DL338651) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS.       46   0.086  2
(DJ205100) Method for identification of useful proteins deri...    46   0.086  2
(DB666905) Saccharomyces cerevisiae mRNA, clone: Y107_K23_F....    46   0.097  2
(DB666628) Saccharomyces cerevisiae mRNA, clone: Y106_D19_F....    46   0.10   2
(FM992694) Candida dubliniensis CD36 chromosome 7, complete ...    50   0.14   1
(AP006852) Candida albicans genomic DNA, chromosome 7, compl...    50   0.14   1
(EJ986147) 1093023011799 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.14   1
(EJ913046) 1093018546935 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.14   1
(EJ831450) 1093017582139 Global-Ocean-Sampling_GS-30-02-01-1...    50   0.14   1
(EY274240) BF01005A2A02.f1 Normalized subtracted keck librar...    50   0.14   1
(D28552) Saccharomyces cerevisiae DNA for Rer1p, complete cds.     46   0.17   2
(T00992) wEST01713 Early embryo, Stratagene (cat. #937007) C...    38   0.20   2
(CO906988) BJ02011C12 BJ02 Capsicum annuum cDNA 5', mRNA seq...    38   0.22   2
(Z54281) Caenorhabditis elegans Cosmid F46C5.                      44   0.26   2
(CB389241) OSTF114F11_1 AD-wrmcDNA Caenorhabditis elegans cD...    38   0.29   2
(EC006440) 7404476 CE04 Caenorhabditis elegans cDNA clone 27...    38   0.31   2
(AP003666) Mus musculus genomic DNA, chromosome 16q clone:RP...    34   0.31   2
(AC154380) Mus musculus BAC clone RP23-52F1 from chromosome ...    34   0.32   2
(AC091900) Homo sapiens chromosome 5 clone RP11-158K14, comp...    38   0.32   2
(AC012686) Homo sapiens clone RP11-2L3, WORKING DRAFT SEQUEN...    38   0.32   2
(AC138308) Mus musculus BAC clone RP23-286G16 from 14, compl...    34   0.33   2
(BM062271) KS01040F04 KS01 Capsicum annuum cDNA, mRNA sequence.    38   0.33   2
(CO910474) BJ03006F09 BJ03 Capsicum annuum cDNA 5', mRNA seq...    38   0.33   2
(AC122705) Homo sapiens chromosome 5 clone RP11-113N15, comp...    38   0.34   2
(CO911937) BJ03025H04 BJ03 Capsicum annuum cDNA 5', mRNA seq...    38   0.35   2
(BY917029) Bombyx mori cDNA, clone:wdV30648, 5' end sequence.      40   0.38   2
(ES599432) BPE00000291 Buddenbrockia plumatellae SMART cDNA ...    34   0.41   2
(AQ042272) CIT-HSP-2326B1.TF CIT-HSP Homo sapiens genomic cl...    38   0.42   2
(DY334523) OB_SEa01C11.f OB_SEa Ocimum basilicum cDNA clone ...    44   0.47   2
(CU633917) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.57   1
(AP010076) Lotus japonicus genomic DNA, chromosome 6, clone:...    48   0.57   1
(FH344297) CHO_OF4631xn15f1.ab1 CHO_OF4 Nicotiana tabacum ge...    48   0.57   1
(EJ644780) 1093012258188 Global-Ocean-Sampling_GS-29-01-01-1...    48   0.57   1
(EJ641365) 1093011914248 Global-Ocean-Sampling_GS-29-01-01-1...    48   0.57   1
(DT484763) WS02526.B21_F16 PT-MB-N-A-15 Populus trichocarpa ...    48   0.57   1
(DT479593) WS02526.BR_F16 PT-MB-N-A-15 Populus trichocarpa c...    48   0.57   1
(CX172601) F07_69-26_11.ab1 leaf inoculated with Marssonia p...    48   0.57   1
(CX170058) D10_69-115_08.ab1 leaf inoculated with Marssonia ...    48   0.57   1
(CV271830) WS0155.B21_M20 PTxN-IB-A-6 Populus trichocarpa x ...    48   0.57   1
(AJ778079) Populus euphratica EST, clone P0000400039B07F1.         48   0.57   1
(BU885019) R019E05 Populus root cDNA library Populus tremula...    48   0.57   1
(BU872387) Q042D08 Populus flower cDNA library Populus trich...    48   0.57   1
(EY459155) AIAG-aaa96a11.g1 Anclostoma_caninum_EST_L3_Normal...    48   0.57   1
(EX802087) CAPI1666.fwd CAPI Laccaria bicolor Mycelium inter...    48   0.57   1
(EX781742) CAHC4571.fwd CAHC Laccaria bicolor Vegetative myc...    48   0.57   1
(EX781741) CAHC4571.rev CAHC Laccaria bicolor Vegetative myc...    48   0.57   1
(EV821361) BGBV-aae54c07.b1 Snail_EST_pSMART Biomphalaria gl...    48   0.57   1
(AP006716) Staphylococcus haemolyticus JCSC1435 DNA, complet...    42   0.60   19
(AL161631) Human DNA sequence from clone RP11-70K10 on chrom...    40   0.68   3
(AL008970) Plasmodium falciparum MAL3P4.                           34   0.90   7
(AC189397) Brassica rapa subsp. pekinensis clone KBrB056C05,...    44   1.0    4
(AC024854) Caenorhabditis elegans clone Y71F9B, complete seq...    42   1.2    4
(AC024201) Caenorhabditis elegans cosmid Y71F9B, complete se...    42   1.2    4
(AC159644) Mus musculus BAC clone RP23-358A18 from chromosom...    32   1.2    2
(AC011096) Homo sapiens clone RP11-2D21, WORKING DRAFT SEQUE...    40   1.2    5
(AC158404) Mus musculus BAC clone RP24-112K13 from chromosom...    32   1.2    2
(AJ805209) Antirrhinum majus EST, clone 018_5_12_d07.              42   1.2    2
(AV275168) Mus musculus adult male testis cDNA, RIKEN full-l...    34   1.4    2
(AJ804877) Antirrhinum majus EST, clone 018_5_11_d08.              42   1.4    2
(AJ795042) Antirrhinum majus EST, clone 018_3_06_p10.              42   1.5    2
(DY897230) SF9L02039 Spodoptera frugiperda cDNA Cell Line Li...    34   1.6    2
(CD080564) MA3-9999U-M312-D04-U.B MA3-0001 Schistosoma manso...    36   1.6    2
(DY781065) Sf1H04869-3-1 Spodoptera frugiperda Hemocytes cDN...    34   1.6    2
(EY134561) CBTH4549.g1_J10.ab1:P Triphysaria pusilla root ti...    36   1.6    2
(DC207307) Plasmodium berghei strain ANKA cDNA clone:MG00734...    36   1.6    2
(FG205601) Aabr02325 Antheraea assama fifth instar larval br...    32   1.6    3
(AL954149) Zebrafish DNA sequence from clone CH211-146G19 in...    38   1.8    4
(AV276713) Mus musculus adult male testis cDNA, RIKEN full-l...    34   1.9    2
(AX345967) Sequence 1038 from Patent WO0200928.                    42   2.0    3
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5...    36   2.2    10
(BX901918) Zebrafish DNA sequence from clone DKEY-189N19 in ...    46   2.3    1
(EZ045028) TSA: Acropora millepora SeqIndex9075, mRNA sequence.    46   2.3    1
(BV665354) S216P61574RE1.T0 Masuku Pan troglodytes troglodyt...    46   2.3    1
(BV035103) S212P6065FF10.T0 CZECHII/Ei Mus musculus STS geno...    46   2.3    1
(AL928658) Mouse DNA sequence from clone RP23-238A18 on chro...    46   2.3    1
(AC159472) Mus musculus 10 BAC RP23-244J20 (Roswell Park Can...    46   2.3    1
(AC153798) Mus musculus  BAC RP23-262P15 (Roswell Park Cance...    46   2.3    1
(CT827944) Pan troglodytes chromosome X clone CH251-185B24 m...    46   2.3    1
(AC217069) Pan troglodytes BAC clone CH251-544H17 from chrom...    46   2.3    1
(AC211717) Pan troglodytes BAC clone CH251-352N8 from chromo...    46   2.3    1
(AC195112) Pan troglodytes BAC clone CH251-703P4 from chromo...    46   2.3    1
(X59720) S.cerevisiae chromosome III complete DNA sequence.        46   2.3    1
(AC189296) Brassica rapa subsp. pekinensis clone KBrB027K16,...    46   2.3    1
(DJ025871) Genome-wide DNA marker of Saccharomyces cerevisiae.     46   2.3    1
(AL159988) Human DNA sequence from clone RP11-480M11 on chro...    46   2.3    1
(AC231842) Homo sapiens BAC clone RP11-601H18 from chromosom...    46   2.3    1
(AC012596) Homo sapiens BAC clone CTD-2523K17 from 7, comple...    46   2.3    1
(AC012594) Homo sapiens BAC clone RP11-519L16 from 2, comple...    46   2.3    1
(AC159691) Bos taurus clone CH240-70N21, WORKING DRAFT SEQUE...    46   2.3    1
(AC128607) Rattus norvegicus clone CH230-8A8, WORKING DRAFT ...    46   2.3    1
(AC125586) Rattus norvegicus clone CH230-1F21, *** SEQUENCIN...    46   2.3    1
(AC112923) Mus musculus clone RP24-544D10, WORKING DRAFT SEQ...    46   2.3    1
(EU519453) Saccharomyces paradoxus strain T76.6 chromosome I...    46   2.3    1
(EU519452) Saccharomyces paradoxus strain T68.2 chromosome I...    46   2.3    1
(EU519451) Saccharomyces paradoxus strain T62.1 chromosome I...    46   2.3    1
(EU519450) Saccharomyces paradoxus strain T32.1 chromosome I...    46   2.3    1
(EU519449) Saccharomyces paradoxus strain T26.3 chromosome I...    46   2.3    1
(EU519448) Saccharomyces paradoxus strain T18.2 chromosome I...    46   2.3    1
(EU519447) Saccharomyces paradoxus strain Q43.5 chromosome I...    46   2.3    1
(EU519446) Saccharomyces paradoxus strain Q15.1 chromosome I...    46   2.3    1
(EU519445) Saccharomyces paradoxus strain Q14.4 chromosome I...    46   2.3    1
(EU519444) Saccharomyces paradoxus strain Q6.1 chromosome II...    46   2.3    1
(EU519443) Saccharomyces paradoxus strain Q4.1 chromosome II...    46   2.3    1
(EU519442) Saccharomyces paradoxus strain CBS8444 chromosome...    46   2.3    1
(EU519441) Saccharomyces paradoxus strain CBS8441 chromosome...    46   2.3    1
(EU519440) Saccharomyces paradoxus strain CBS8440 chromosome...    46   2.3    1
(EU519439) Saccharomyces paradoxus strain CBS8439 chromosome...    46   2.3    1
(EU519438) Saccharomyces paradoxus strain CBS8438 chromosome...    46   2.3    1
(EU519437) Saccharomyces paradoxus strain CBS8437 chromosome...    46   2.3    1
(EU519436) Saccharomyces paradoxus strain CBS8436 chromosome...    46   2.3    1
(EU444726) Saccharomyces paradoxus strain CBS8442 chromosome...    46   2.3    1
(EU444725) Saccharomyces cariocanus strain CBS8841 chromosom...    46   2.3    1
(AC068743) Homo sapiens chromosome 2 clone RP11-131E18 map 2...    46   2.3    1
(AC223052) Bos taurus clone CH240-431C19, WORKING DRAFT SEQU...    46   2.3    1
(AC165579) Bos taurus clone CH240-170M4, WORKING DRAFT SEQUE...    46   2.3    1
(AZ697174) RPCI-23-238E24.TV RPCI-23 Mus musculus genomic cl...    46   2.3    1
(AZ287250) RPCI-23-444N6.TV RPCI-23 Mus musculus genomic clo...    46   2.3    1
(EJ376630) 1092963744775 Global-Ocean-Sampling_GS-28-01-01-1...    46   2.3    1
(EI760001) CHORI510R310D02TF BAC library from the primary ov...    46   2.3    1
(DU058285) 96869 Tomato HindIII BAC Library Solanum lycopers...    46   2.3    1
(CT216175) Sus scrofa genomic clone PigE-188A3, genomic surv...    46   2.3    1
(BX139748) Danio rerio genomic clone DKEY-97K10, genomic sur...    46   2.3    1
(AG468866) Mus musculus molossinus DNA, clone:MSMg01-359H07....    46   2.3    1
(DR981071) 0080 Miamiensis avidus YS1 cDNA Miamiensis avidus...    46   2.3    1
(DR015213) STRS1_2_D10.b1_A034 Shoot tip pitch canker suscep...    46   2.3    1
(DB659111) Saccharomyces cerevisiae mRNA, clone: Y051_G23_F....    46   2.3    1
(CX182735) B06_45-16_04.ab1 leaf inoculated with Marssonia p...    46   2.3    1
(CX178135) E07_45-99_09.ab1 leaf inoculated with Marssonia p...    46   2.3    1
(CN520512) GQ0105.B3_N20 GQ010 Populus trichocarpa x Populus...    46   2.3    1
(CK089048) A085P70.3pR Hybrid aspen plasmid library Populus ...    46   2.3    1
(AJ774043) Populus euphratica EST, clone P0000300008A03F1.         46   2.3    1
(BU837630) T104A02 Populus apical shoot cDNA library Populus...    46   2.3    1
(FK868964) EST_crog_evp_903839 crog_evp Caligus rogercressey...    46   2.3    1
(FK868963) EST_crog_evp_899231 crog_evp Caligus rogercressey...    46   2.3    1
(FG298335) 1108793309165 New World Screwworm Larvae 9387 EST...    46   2.3    1
(EY026681) JGI_CAOH1006.fwd CAOH Acropora palmata 15 day old...    46   2.3    1
(EY026680) JGI_CAOH1006.rev CAOH Acropora palmata 15 day old...    46   2.3    1
(EX561261) AIAE-aaa35e04.g1 Ancylostoma_caninum_EST_Female_p...    46   2.3    1
(EW780703) SmSal480 Orange wheat blossom midge salivary glan...    46   2.3    1
(AC186253) Oryctolagus cuniculus clone LB1-276I10, WORKING D...    42   2.5    4
(AM778092) Carica papaya Y chromosome sequence, clone PH 17J04.    42   2.5    2
(CR931737) Medicago truncatula chromosome 5 clone mth2-65j24...    42   2.6    3
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    36   2.6    11
(AC162064) Bos taurus clone CH240-112O17, WORKING DRAFT SEQU...    38   2.8    4
(BQ596399) PfESToab33c08.y1 Plasmodium falciparum 3D7 asexua...    38   3.0    2
(AC104589) Homo sapiens chromosome 15 clone RP11-631B19 map ...    34   3.0    8
(AC233339) Monodelphis domestica clone VMRC18-110I2, WORKING...    36   3.3    6
(BI816355) PfESToaa39d12.y1 Plasmodium falciparum 3D7 asexua...    38   3.8    2
(BI813850) PfESToaa19a10.y1 Plasmodium falciparum 3D7 asexua...    38   4.1    2
(AF250284) Amsacta moorei entomopoxvirus, complete genome.         42   4.2    6
(AC161013) Pan troglodytes BAC clone CH251-500P22 from chrom...    32   4.3    2
(AC222455) Bos taurus clone CH240-418L4, WORKING DRAFT SEQUE...    34   4.3    2
(AC158010) Bos taurus clone CH240-189C3, WORKING DRAFT SEQUE...    34   4.3    2
(AC182910) Bos taurus clone CH240-308K10, WORKING DRAFT SEQU...    44   5.0    3
(CK498921) rswbb0_009145.y1 swb Bombyx mori cDNA, mRNA seque...    36   5.1    2
(AC224506) Bos taurus clone CH240-483L18, WORKING DRAFT SEQU...    44   5.1    3
(AL929229) Zebrafish DNA sequence from clone CH211-1E14 in l...    34   5.3    6
(CL348434) RPCI44_274P23.r RPCI-44 Sus scrofa genomic clone ...    40   5.3    2
(EJ322076) 1095403401334 Global-Ocean-Sampling_GS-27-01-01-1...    36   5.4    2
(CF478079) RTWW3_17_A03.g1_A022 Well-watered loblolly pine r...    34   5.5    2
(AY222911) Schistosoma japonicum clone ZZD1243 mRNA sequence.      34   5.7    2
(AY813476) Schistosoma japonicum SJCHGC04752 protein mRNA, c...    34   5.7    2
(BU722740) SJMALF01 SJM Schistosoma japonicum cDNA similar t...    34   5.8    2
(CR427992) Xenopus tropicalis EST, clone TTbA058e10 3'.            34   5.8    2
(CD139600) MG1-0064T-D213-E10-U.G MG1-0064 Schistosoma manso...    34   6.0    2
(DY812149) CTOX20875.b2_F11.ab1 CTO(XYZ) dandelion Taraxacum...    34   6.3    2
(EJ752799) 1092963047920 Global-Ocean-Sampling_GS-30-02-01-1...    36   6.5    2
(AE001396) Plasmodium falciparum 3D7 chromosome 2 section 33...    30   6.6    6
(AC010479) Homo sapiens chromosome 5 clone CTD-2314I21, WORK...    44   6.7    2
(ES395396) MUS12-G07.x1d-t SHGC-MUS Mytilus californianus cD...    40   7.4    2
(CR954186) Medicago truncatula chromosome 5 clone mth2-117e1...    36   7.8    4
(BV291315) S232P6570RG4.T0 Beagle Canis familiaris STS genom...    44   8.9    1
(AC159186) Mus musculus BAC clone RP24-281N15 from chromosom...    44   8.9    1
(AC154659) Mus musculus BAC clone RP24-269K6 from chromosome...    44   8.9    1
(AC151265) Mus musculus BAC clone RP24-372H7 from chromosome...    44   8.9    1
(AC124356) Mus musculus BAC clone RP24-484D12 from chromosom...    44   8.9    1
(EF145509) Populus trichocarpa clone WS01125_I05 unknown mRNA.     44   8.9    1
(AP008213) Oryza sativa (japonica cultivar-group) genomic DN...    44   8.9    1
(AP004264) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.9    1
(AP003745) Oryza sativa Japonica Group genomic DNA, chromoso...    44   8.9    1
(AM487384) Vitis vinifera contig VV78X065901.3, whole genome...    44   8.9    1
(AM462440) Vitis vinifera contig VV79X004578.1, whole genome...    44   8.9    1
(AC162277) Medicago truncatula clone mth2-192a14, complete s...    44   8.9    1
(AC069159) Arabidopsis thaliana chromosome 1 BAC F14G9 genom...    44   8.9    1
(AC009894) Arabidopsis thaliana chromosome I BAC T6H22 genom...    44   8.9    1
(EA702734) Sequence 81613 from patent US 7365185.                  44   8.9    1
(EA414784) Sequence 16892 from patent US 7319142.                  44   8.9    1
(EA413636) Sequence 15744 from patent US 7319142.                  44   8.9    1
(EA407684) Sequence 3676 from patent US 7319142.                   44   8.9    1
(CS623437) Sequence 47 from Patent WO2006060308.                   44   8.9    1
(GC881122) Sequence 196367 from patent US 6812339.                 44   8.9    1
(GC881121) Sequence 196366 from patent US 6812339.                 44   8.9    1
(GC881120) Sequence 196365 from patent US 6812339.                 44   8.9    1
(GC702060) Sequence 17305 from patent US 6812339.                  44   8.9    1
(GC697651) Sequence 12896 from patent US 6812339.                  44   8.9    1
(AP002529) Homo sapiens genomic DNA, chromosome 6q21, anti-o...    44   8.9    1
(AL356259) Human DNA sequence from clone RP11-385E5 on chrom...    44   8.9    1
(AL133467) Human chromosome 14 DNA sequence BAC R-1070N10 of...    44   8.9    1
(AC104110) Homo sapiens chromosome 5 clone RP11-160A17, comp...    44   8.9    1
(AC073165) Homo sapiens chromosome 5 clone RP11-54E9, comple...    44   8.9    1
(AC007256) Homo sapiens BAC clone RP11-575C6 from 2, complet...    44   8.9    1
(AC007131) Homo sapiens BAC clone RP11-179A20 from 2, comple...    44   8.9    1
(AC162024) Bos taurus clone CH240-24O7, WORKING DRAFT SEQUEN...    44   8.9    1
(AC161837) Bos taurus clone CH240-100O10, WORKING DRAFT SEQU...    44   8.9    1
(AC157294) Bos taurus clone CH240-61D14, WORKING DRAFT SEQUE...    44   8.9    1
(AC151276) Mus musculus chromosome 17 clone RP24-166E12, ***...    44   8.9    1
(AC112054) Rattus norvegicus clone CH230-198B18, *** SEQUENC...    44   8.9    1
(AC108659) Rattus norvegicus clone CH230-93L14, *** SEQUENCI...    44   8.9    1
(AC103629) Mus musculus chromosome 17 clone RP24-166E12 map ...    44   8.9    1
(CU929190) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.9    1
(AC074016) Homo sapiens chromosome 2 clone RP11-155P18, WORK...    44   8.9    1
(AC027099) Homo sapiens chromosome 5 clone RP11-122N15 map 5...    44   8.9    1
(AL590046) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   8.9    1
(AL450318) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   8.9    1
(AL139104) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   8.9    1
(AC224299) Bos taurus clone CH240-489I5, WORKING DRAFT SEQUE...    44   8.9    1
(AC182590) Bos taurus clone CH240-489I18, WORKING DRAFT SEQU...    44   8.9    1
(AC173619) Bos taurus clone CH240-88E7, WORKING DRAFT SEQUEN...    44   8.9    1
(AC019277) Homo sapiens clone RP11-12J15, WORKING DRAFT SEQU...    44   8.9    1
(AB041992) Homo sapiens genomic DNA, chromosome 6q21, clone:...    44   8.9    1
(ET085029) QM0AAC7CB09FM1 CCH3 Citrus clementina genomic clo...    44   8.9    1
(ER301504) 1092343699300 Global-Ocean-Sampling_GS-34-01-01-1...    44   8.9    1
(EK437003) 1095521070373 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.9    1
(EK315812) 1095462412645 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.9    1
(EK226824) 1095460161778 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.9    1
(AM628700) Entamoeba dispar GSS, clone dispar2g07.p1k.             44   8.9    1
(EJ235546) 1092405931833 Global-Ocean-Sampling_GS-27-01-01-1...    44   8.9    1
(DU370567) 1098268193389 CHORI-243 Ovis aries genomic clone ...    44   8.9    1
(DH026225) Oryzias latipes Fosmid clone:GOLWFno41_c20, rever...    44   8.9    1
(DE186370) Bombyx mori genomic DNA, Fosmid clone:RO0342-B08_F.     44   8.9    1
(CZ548868) DM_CBa0009C23.r DM_CBa Drosophila mojavensis geno...    44   8.9    1
(CU102594) Equus caballus GSS, BAC clone CH241-208L18, T7 en...    44   8.9    1
(CE229334) tigr-gss-dog-17000333277436 Dog Library Canis lup...    44   8.9    1
(CC201685) CH261-22N14_Sp6.1 CH261 Gallus gallus genomic clo...    44   8.9    1
(EG637273) gmapht_0022g07.pDNRm13r.scf Gadus morhua heart li...    44   8.9    1
(EB005117) GtraSEQ9069 Gloeophyllum trabeum pBluescript (Eco...    44   8.9    1
(EB004297) GtraSEQ9295 Gloeophyllum trabeum pBluescript (Eco...    44   8.9    1
(DT521440) WS02034.B21_E18 PTxN-IB-N-A-11 Populus trichocarp...    44   8.9    1
(DT520633) WS02448.B21_B18 PTxD-ICC-N-A-14 Populus trichocar...    44   8.9    1
(DT513225) WS02421.B21_H13 PTxD-ICC-N-A-14 Populus trichocar...    44   8.9    1
(DT508617) WS02421.BR_H13 PTxD-ICC-N-A-14 Populus trichocarp...    44   8.9    1
(DT497109) WS01125.BR_I05 PT-P-FL-A-2 Populus trichocarpa cD...    44   8.9    1
(DT492211) WS02549.C21_P08 PT-MB-N-A-15 Populus trichocarpa ...    44   8.9    1
(DT491052) WS02546.C21.1_K21 PT-MB-N-A-15 Populus trichocarp...    44   8.9    1
(DT490625) WS02545.B21_H17 PT-MB-N-A-15 Populus trichocarpa ...    44   8.9    1
(DT486496) WS02531.B21_C10 PT-MB-N-A-15 Populus trichocarpa ...    44   8.9    1
(DT483191) WS02521.B21_O14 PT-MB-N-A-15 Populus trichocarpa ...    44   8.9    1
(DT481184) WS02531.BR_C10 PT-MB-N-A-15 Populus trichocarpa c...    44   8.9    1
(DT478123) WS02521.BR_O14 PT-MB-N-A-15 Populus trichocarpa c...    44   8.9    1
(CV517031) 0048P0018Z_G11_T7 Mimulus guttatus library 1 Mimu...    44   8.9    1
(CV276401) WS0179.B21_K17 PTxD-NR-A-8 Populus trichocarpa x ...    44   8.9    1
(CV270846) WS0153.B21_B15 PTxN-IB-A-6 Populus trichocarpa x ...    44   8.9    1
(CV257549) WS0246.B21_P19 PTxD-ICC-N-A-14 Populus trichocarp...    44   8.9    1
(CV249850) WS01125.B21_I05 PT-P-FL-A-2 Populus trichocarpa c...    44   8.9    1
(CV242646) WS02515.B21_K08 PT-MB-N-A-15 Populus trichocarpa ...    44   8.9    1
(CV241539) WS02512.B21_I01 PT-MB-N-A-15 Populus trichocarpa ...    44   8.9    1
(CV228487) WS01910.B21_E19 PT-DX-N-A-10 Populus trichocarpa ...    44   8.9    1
(CV228034) WS0168.B21_O13 PT-DX-A-7 Populus trichocarpa cDNA...    44   8.9    1
(BX349234) human full-length cDNA 5-PRIME end of clone CS0DL...    44   8.9    1
(BE048757) hr53b08.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone...    44   8.9    1
(FC760355) CBBN1202.fwd CBBN Lottia gigantea 3,4,5,6.5d Larv...    44   8.9    1
(FC605342) CAXS2045.fwd CAXS Lottia gigantea from head, foot...    44   8.9    1
(FC596635) CAXP9970.rev CAXP Lottia gigantea from head, foot...    44   8.9    1
(EY671338) CS00-C1-102-080-A08-CT.F Sweet orange leaf, infec...    44   8.9    1
(EY436813) qm_NP28.C06 Milwaukee estuary quagga mussel gills...    44   8.9    1
(EX837615) CBNB7012.fwd CBNB Phycomyces blakesleeanus NRRL15...    44   8.9    1
(EX837614) CBNB7012.rev CBNB Phycomyces blakesleeanus NRRL15...    44   8.9    1
(EX834237) CBNB4441.fwd CBNB Phycomyces blakesleeanus NRRL15...    44   8.9    1
(EX834236) CBNB4441.rev CBNB Phycomyces blakesleeanus NRRL15...    44   8.9    1
(EX000875) BGBV-aae28d01.g1 Snail_EST_pSMART Biomphalaria gl...    44   8.9    1
(EV818821) BGBV-aae54c07.g1 Snail_EST_pSMART Biomphalaria gl...    44   8.9    1
(FJ577828) Uncultured Amoebozoa clone Joinv04 18S ribosomal ...    44   8.9    1
(AM398681) Flavobacterium psychrophilum JIP02/86 complete ge...    44   8.9    1
(AE001384) Plasmodium falciparum 3D7 chromosome 2 section 21...    34   9.8    4

>(AU263344) Dictyostelium discoideum vegetative cDNA clone:VSE748,
           3' end single read.
          Length = 514

 Score = 1005 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Plus


Query: 224 acaatttcattcattccacaaagatgggcatttgttggttttttatcattcctttatata 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acaatttcattcattccacaaagatgggcatttgttggttttttatcattcctttatata 60


Query: 284 cttagagtatcattatcaagtggtggttggtatgttattacctacgcccttggtatattt 343
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cttagagtatcattatcaagtggtggttggtatgttattacctacgcccttggtatattt 120


Query: 344 ctattgacacgtttcattgcatttttatcaccaaaatgggatccagaacttgaagaagat 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctattgacacgtttcattgcatttttatcaccaaaatgggatccagaacttgaagaagat 180


Query: 404 tcaggtgattcattaccaactacactcaatagaaatgatgacgaagcaaaaccattcatt 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcaggtgattcattaccaactacactcaatagaaatgatgacgaagcaaaaccattcatt 240


Query: 464 agaagattaccagagttccttttctggcactcaattttcaaagcattatttatttcaatt 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaagattaccagagttccttttctggcactcaattttcaaagcattatttatttcaatt 300


Query: 524 ttctgcacctttattccatttttagatttaccagtattttggccaattcttttattatat 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttctgcacctttattccatttttagatttaccagtattttggccaattcttttattatat 360


Query: 584 ttcatcattatcttttccgttactatgaagaaacaaattaaacatatgattaaatataaa 643
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttcatcattatcttttccgttactatgaagaaacaaattaaacatatgattaaatataaa 420


Query: 644 tatattccattcacagttggaaagaaaacttatacaaaaaataatagctaatcgttcata 703
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatattccattcacagttggaaagaaaacttatacaaaaaataatagctaatcgttcata 480


Query: 704 cgacgaataatgcaacaaaacttttac 730
           |||||||||||||||||||||||||||
Sbjct: 481 cgacgaataatgcaacaaaacttttac 507

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 995,000,769
Number of extensions: 65343184
Number of successful extensions: 5690967
Number of sequences better than 10.0: 328
Length of query: 874
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 850
Effective length of database: 99,340,224,878
Effective search space: 84439191146300
Effective search space used: 84439191146300
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04515-1 (Contig-U04515-1Q) /CSM_Contig/Contig-U04515-1Q.Seq.d
         (874 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54D10) RecName: Full=Protein RER1 homolog;                          388   e-106
BT080072_1(BT080072|pid:none) Esox lucius clone eluc-evq-530-159...   187   3e-46
BC141981_1(BC141981|pid:none) Bos taurus RER1 retention in endop...   187   3e-46
(A5PJ65) RecName: Full=Protein RER1;  &BC151447_1(BC151447|pid:n...   187   3e-46
BT045447_1(BT045447|pid:none) Salmo salar clone ssal-rgf-521-332...   187   4e-46
BC088589_1(BC088589|pid:none) Xenopus tropicalis retention in en...   187   4e-46
CR456806_1(CR456806|pid:none) Homo sapiens full open reading fra...   186   7e-46
BT073164_1(BT073164|pid:none) Oncorhynchus mykiss clone omyk-evn...   186   7e-46
(O15258) RecName: Full=Protein RER1;  &(Q5R5U4) RecName: Fu &AJ0...   186   7e-46
AY892036_1(AY892036|pid:none) Synthetic construct Homo sapiens c...   186   7e-46
BT074606_1(BT074606|pid:none) Osmerus mordax clone omor-eva-502-...   186   7e-46
AF157324_1(AF157324|pid:none) Homo sapiens RER1 protein (RER1) m...   186   7e-46
(Q498C8) RecName: Full=Protein RER1;  &(Q9CQU3) RecName: Fu &AK0...   185   2e-45
AE014297_3897(AE014297|pid:none) Drosophila melanogaster chromos...   184   4e-45
AY398406_1(AY398406|pid:none) Danio rerio clone RK139A1B03 RER1 ...   183   8e-45
AE014297_3896(AE014297|pid:none) Drosophila melanogaster chromos...   183   8e-45
BC077533_1(BC077533|pid:none) Xenopus laevis MGC83321 protein, m...   181   2e-44
CU633900_890(CU633900|pid:none) Podospora anserina genomic DNA c...   180   5e-44
AP006852_351(AP006852|pid:none) Candida albicans genomic DNA, ch...   178   2e-43
AK341107_1(AK341107|pid:none) Acyrthosiphon pisum ACYPI003875 mR...   175   2e-42
AP007171_456(AP007171|pid:none) Aspergillus oryzae RIB40 genomic...   173   8e-42
BT070891_1(BT070891|pid:none) Picea sitchensis clone WS02758_H05...   172   1e-41
AM270003_14(AM270003|pid:none) Aspergillus niger contig An02c008...   172   1e-41
CR382121_361(CR382121|pid:none) Kluyveromyces lactis strain NRRL...   172   1e-41
AP006480_15(AP006480|pid:none) Oryza sativa Japonica Group genom...   171   2e-41
FN392319_237(FN392319|pid:none) Pichia pastoris GS115 chromosome...   171   2e-41
CR954214_159(CR954214|pid:none) Ostreococcus tauri strain OTTH05...   171   3e-41
(P79003) RecName: Full=Protein RER1; AltName: Full=Retention of ...   170   7e-41
CR382139_491(CR382139|pid:none) Debaryomyces hansenii strain CBS...   170   7e-41
CP000501_89(CP000501|pid:none) Pichia stipitis CBS 6054 chromoso...   169   1e-40
FN357327_71(FN357327|pid:none) Schistosoma mansoni genome sequen...   167   6e-40
(P25560) RecName: Full=Protein RER1; AltName: Full=Retention of ...   166   7e-40
AB010946_1(AB010946|pid:none) Arabidopsis thaliana mRNA for AtRe...   166   1e-39
EF145185_1(EF145185|pid:none) Populus trichocarpa clone WS01121_...   166   1e-39
BT076950_1(BT076950|pid:none) Caligus rogercresseyi clone crog-e...   166   1e-39
EF086615_1(EF086615|pid:none) Picea sitchensis clone WS02743_P16...   165   2e-39
AP008212_2008(AP008212|pid:none) Oryza sativa (japonica cultivar...   164   4e-39
AK243324_1(AK243324|pid:none) Oryza sativa Japonica Group cDNA, ...   164   4e-39
EF677192_1(EF677192|pid:none) Picea sitchensis clone WS02763_F07...   163   8e-39
AK060999_1(AK060999|pid:none) Oryza sativa Japonica Group cDNA c...   159   1e-37
EU973627_1(EU973627|pid:none) Zea mays clone 403175 RER1A protei...   159   2e-37
AM989984_24(AM989984|pid:none) Zygosaccharomyces rouxii strain C...   157   6e-37
EU967708_1(EU967708|pid:none) Zea mays clone 305479 RER1A protei...   157   6e-37
AE017341_306(AE017341|pid:none) Cryptococcus neoformans var. neo...   155   2e-36
(Q10358) RecName: Full=Protein rer1; AltName: Full=Retention of ...   153   8e-36
FN317716_1(FN317716|pid:none) Schistosoma japonicum isolate Anhu...   153   8e-36
AC006439_24(AC006439|pid:none) Arabidopsis thaliana chromosome 2...   150   5e-35
BT029522_1(BT029522|pid:none) Arabidopsis thaliana At2g18240 mRN...   150   5e-35
AM910989_3(AM910989|pid:none) Plasmodium knowlesi strain H chrom...   147   6e-34
AL844508_31(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...   137   4e-31
AM502240_56(AM502240|pid:none) Leishmania infantum chromosome 22.     136   1e-30
CT005261_56(CT005261|pid:none) Leishmania major strain Friedlin,...   134   3e-30
AC159413_36(AC159413|pid:none) Trypanosoma brucei chromosome 7 c...   133   9e-30
AY813476_1(AY813476|pid:none) Schistosoma japonicum SJCHGC04752 ...   126   8e-28
AL590448_70(AL590448|pid:none) chromosome VIII of strain GB-M1 o...   119   1e-25
AJ303360_1(AJ303360|pid:none) Zygosaccharomyces rouxii el002-w g...   107   5e-22
AF091071_1(AF091071|pid:none) Homo sapiens clone 192 Rer1 mRNA, ...   103   1e-20
AL513477_5(AL513477|pid:none) Human DNA sequence from clone RP4-...   103   1e-20
AY166722_1(AY166722|pid:none) Capsella rubella putative endoplas...    91   7e-17
AJ698926_1(AJ698926|pid:none) Populus euramericana partial mRNA ...    85   4e-15
AM494959_53(AM494959|pid:none) Leishmania braziliensis chromosom...    44   0.009
CR380949_66(CR380949|pid:none) Candida glabrata strain CBS138 ch...    42   0.021
AY360388_7(AY360388|pid:none) Oryza sativa (japonica cultivar-gr...    40   0.14
CR380949_65(CR380949|pid:none) Candida glabrata strain CBS138 ch...    38   0.51
CP001074_2826(CP001074|pid:none) Rhizobium etli CIAT 652, comple...    36   1.5
CP000817_4209(CP000817|pid:none) Lysinibacillus sphaericus C3-41...    36   2.0
CP000815_866(CP000815|pid:none) Paulinella chromatophora chromat...    36   2.0
AM447608_2(AM447608|pid:none) Vitis vinifera contig VV78X047739....    35   3.3
CP001275_11(CP001275|pid:none) Thermomicrobium roseum DSM 5159, ...    35   3.3
BX569693_120(BX569693|pid:none) Synechococcus sp. WH8102 complet...    34   5.7
AJ248285_236(AJ248285|pid:none) Pyrococcus abyssi complete genom...    34   7.4
CP000742_426(CP000742|pid:none) Methanococcus vannielii SB, comp...    34   7.4
CP000688_784(CP000688|pid:none) Dehalococcoides sp. BAV1, comple...    34   7.4
CP000939_1154(CP000939|pid:none) Clostridium botulinum B1 str. O...    34   7.4
AP009608_855(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ...    33   9.7

>(Q54D10) RecName: Full=Protein RER1 homolog;
          Length = 188

 Score =  388 bits (996), Expect = e-106
 Identities = 188/188 (100%), Positives = 188/188 (100%)
 Frame = +2

Query: 128 MPTTIDEGLPAPHNFVSFTTLIARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSG 307
           MPTTIDEGLPAPHNFVSFTTLIARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSG
Sbjct: 1   MPTTIDEGLPAPHNFVSFTTLIARKYQNLIEKTISFIPQRWAFVGFLSFLYILRVSLSSG 60

Query: 308 GWYVITYALGIFLLTRFIAFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLF 487
           GWYVITYALGIFLLTRFIAFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLF
Sbjct: 61  GWYVITYALGIFLLTRFIAFLSPKWDPELEEDSGDSLPTTLNRNDDEAKPFIRRLPEFLF 120

Query: 488 WHSIFKALFISIFCTFIPFLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTVGK 667
           WHSIFKALFISIFCTFIPFLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTVGK
Sbjct: 121 WHSIFKALFISIFCTFIPFLDLPVFWPILLLYFIIIFSVTMKKQIKHMIKYKYIPFTVGK 180

Query: 668 KTYTKNNS 691
           KTYTKNNS
Sbjct: 181 KTYTKNNS 188

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,190,730,848
Number of extensions: 22596634
Number of successful extensions: 59401
Number of sequences better than 10.0: 75
Number of HSP's gapped: 59236
Number of HSP's successfully gapped: 75
Length of query: 291
Length of database: 1,061,185,681
Length adjustment: 127
Effective length of query: 164
Effective length of database: 646,092,785
Effective search space: 105959216740
Effective search space used: 105959216740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.95  gvh: 0.43  alm: 0.23  top: 0.53  tms: 0.27  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 16.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U04515-1 is end
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0