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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04547-1
Contig ID Contig-U04547-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04547-1 (Contig-U04547-1Q) /CSM_Contig/Contig-U04547-1Q.Seq.d
AAGAAAAACCAATAAATATAAATGGTAAGGTTTTGTCATTAAGTTTTGCA
AAACCAATAGATAAAAAATTAAGATCCGATAAGATTCAAAGAAAATTACA
AAGAATTTCCAATAATCAAAAAAATAATTTGAATAATTTAAATAATAGTT
TTAATAATTTAAATAATATAAATAATGGGAATCTATTTGGAAGTACATCT
TTTAATCCTCATATTCCCCAACATTATAAAAACTCAAGTGTACATTATAA
CCAACTAAATAATAATAATAATAATAATAATAATAATAATAATAATAATC
AACAACNNAAACAATTATTACAACAACAATTTTTAAATNATTTAAATAAT
AATACCAATAATAATTTTAATAACTTTAATGGAAATTTACCAATGGATAA
TACATATTTACAACTTTTACAGCAACAACAACAACTTCAACCCCAACAAT
TATATTTCAATTATCCGAACTCCTTAAATAATGGAAATTTTCAAAAAAAA
AGATTTACTCCATACTAATTAAATAAAAACTTAATAGGAAAAAATAAAAA
AATATTTATATATTCTTTCCAAACG
Gap no gap
Contig length 575
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5599936
End point 5599378
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U04547
List of clone(s) 

est1=SSB379E,1,576
Translated Amino Acid sequence 
EKPININGKVLSLSFAKPIDKKLRSDKIQRKLQRISNNQKNNLNNLNNSFNNLNNINNGN
LFGSTSFNPHIPQHYKNSSVHYNQLNNNNNNNNNNNNNNQQXKQLLQQQFLNXLNNNTNN
NFNNFNGNLPMDNTYLQLLQQQQQLQPQQLYFNYPNSLNNGNFQKKRFTPY*lnknligk
nkkifiysfqt
Translated Amino Acid sequence (All Frames) 
Frame A:
kknq*i*mvrfch*vlqnq*ikn*dpirfkenykefpiikkii*ii*iivlii*ii*img
iylevhllilifpniiktqvyiitn*iiiiiiiiiiiiiinnxnnyynnnf*xi*iiipi
iilitlmeiyqwiihiynfysnnnnfnpnnyisiirtp*imeifkkkdllhtn*ikt**e
kikkylyilsk


Frame B:
rktnkykw*gfvikfcktnr*kikir*dskkitknfq*skk*fe*fk**f**fk*yk*we
siwkyif*ssysptl*klkctl*ptk*************sttxtiitttifkxfk**yq*
*f**l*wkftng*yifttftattttstptiifqlsellk*wkfskkkiysilik*klnrk
k*kniyiffpn


Frame C:
EKPININGKVLSLSFAKPIDKKLRSDKIQRKLQRISNNQKNNLNNLNNSFNNLNNINNGN
LFGSTSFNPHIPQHYKNSSVHYNQLNNNNNNNNNNNNNNQQXKQLLQQQFLNXLNNNTNN
NFNNFNGNLPMDNTYLQLLQQQQQLQPQQLYFNYPNSLNNGNFQKKRFTPY*lnknligk
nkkifiysfqt
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04547-1 (Contig-U04547-1Q)
/CSM_Contig/Contig-U04547-1Q.Seq.d
         (575 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04547-1 (Contig-U04547-1Q) /CSM_Contig/Conti...   262  4e-70
Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Conti...    46  4e-05
Contig-U14107-1 (Contig-U14107-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U01465-1 (Contig-U01465-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U06437-1 (Contig-U06437-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U13940-1 (Contig-U13940-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12535-1 (Contig-U12535-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12308-1 (Contig-U12308-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U03186-1 (Contig-U03186-1Q) /CSM_Contig/Conti...    38  0.010

>Contig-U04547-1 (Contig-U04547-1Q) /CSM_Contig/Contig-U04547-1Q.Seq.d
          Length = 575

 Score =  262 bits (132), Expect = 4e-70
 Identities = 150/159 (94%)
 Strand = Plus / Plus

                                                                       
Query: 380 tggaaatttaccaatggataatacatatttacaacttttacagcaacaacaacaacttca 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tggaaatttaccaatggataatacatatttacaacttttacagcaacaacaacaacttca 439

                                                                       
Query: 440 accccaacaattatatttcaattatccgaactccttaaataatggaaattttcnnnnnnn 499
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 440 accccaacaattatatttcaattatccgaactccttaaataatggaaattttcaaaaaaa 499

                                                  
Query: 500 nngatttactccatactaattaaataaaaacttaatagg 538
             |||||||||||||||||||||||||||||||||||||
Sbjct: 500 aagatttactccatactaattaaataaaaacttaatagg 538


 Score =  232 bits (117), Expect = 3e-61
 Identities = 117/117 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaaaaaccaataaatataaatggtaaggttttgtcattaagttttgcaaaaccaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aagaaaaaccaataaatataaatggtaaggttttgtcattaagttttgcaaaaccaatag 60

                                                                    
Query: 61  ataaaaaattaagatccgataagattcaaagaaaattacaaagaatttccaataatc 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ataaaaaattaagatccgataagattcaaagaaaattacaaagaatttccaataatc 117


 Score =  157 bits (79), Expect = 2e-38
 Identities = 79/79 (100%)
 Strand = Plus / Plus

                                                                       
Query: 177 gggaatctatttggaagtacatcttttaatcctcatattccccaacattataaaaactca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gggaatctatttggaagtacatcttttaatcctcatattccccaacattataaaaactca 236

                              
Query: 237 agtgtacattataaccaac 255
           |||||||||||||||||||
Sbjct: 237 agtgtacattataaccaac 255


 Score = 46.1 bits (23), Expect = 4e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 553 tatttatatattctttccaaacg 575
           |||||||||||||||||||||||
Sbjct: 553 tatttatatattctttccaaacg 575


>Contig-U11830-1 (Contig-U11830-1Q) /CSM_Contig/Contig-U11830-1Q.Seq.d
          Length = 971

 Score = 46.1 bits (23), Expect = 4e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 419 acagcaacaacaacaacttcaac 441
           |||||||||||||||||||||||
Sbjct: 722 acagcaacaacaacaacttcaac 744


>Contig-U14107-1 (Contig-U14107-1Q) /CSM_Contig/Contig-U14107-1Q.Seq.d
          Length = 124

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 423 caacaacaacaacttcaaccccaac 447
           ||||||||||||||||||| |||||
Sbjct: 42  caacaacaacaacttcaacaccaac 66


 Score = 30.2 bits (15), Expect = 2.5
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 421 agcaacaacaacaac 435
           |||||||||||||||
Sbjct: 82  agcaacaacaacaac 96


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,861
Number of Sequences: 6905
Number of extensions: 13861
Number of successful extensions: 5131
Number of sequences better than 10.0: 706
length of query: 575
length of database: 5,674,871
effective HSP length: 16
effective length of query: 559
effective length of database: 5,564,391
effective search space: 3110494569
effective search space used: 3110494569
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 6.23
Homology vs DNA 
Query= Contig-U04547-1 (Contig-U04547-1Q) /CSM_Contig/Contig-U04547-1Q.Seq.d
         (575 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AY392444) Dictyostelium discoideum RNA-binding protein gene...   204   e-130  4
(AF072431) Dictyostelium discoideum putative RNA binding pro...   204   e-130  4
(AU071389) Dictyostelium discoideum slug cDNA, clone SSB379.      204   3e-79  2
(C84244) Dictyostelium discoideum slug cDNA, clone SSB379.        161   7e-79  3
(AC217718) Solanum tuberosum chromosome 1 clone RH089B02, **...    48   0.015  3
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    52   0.024  1
(AU268606) Dictyostelium discoideum vegetative cDNA clone:VS...    52   0.024  1
(FK704784) ADM-P31_C01 Adult female salivary gland cDNA libr...    50   0.094  1
(AC232028) Solanum tuberosum chromosome 1 clone RH053G11, **...    38   0.22   2
(AF170083) Candida albicans putative transcriptional repress...    34   0.26   2
(AC234530) Solanum tuberosum chromosome 1 clone RH040C01, **...    48   0.37   1
(AC233419) Solanum tuberosum chromosome 1 clone RH071B08, **...    48   0.37   1
(ER863119) POTM801TF Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.37   1
(EI384617) POTCU50TR Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.37   1
(EI383514) POTC320TR Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.37   1
(EI383123) POTA375TR Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.37   1
(EI380234) POTBW65TR Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.37   1
(EI374463) POTBP30TF Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.37   1
(EI367531) POTCB91TF Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.37   1
(CU633509) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.47   5
(CU633895) Podospora anserina genomic DNA chromosome 4, supe...    46   1.5    1
(AC171131) Helobdella robusta clone CH306-1A2, complete sequ...    46   1.5    1
(AC171127) Helobdella robusta clone CH306-1A1, complete sequ...    46   1.5    1
(AC152852) Carollia perspicillata clone 299C9, WORKING DRAFT...    46   1.5    1
(AC152851) Carollia perspicillata clone 107E13, WORKING DRAF...    46   1.5    1
(EJ273521) 1095366003601 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.5    1
(AU039777) Dictyostelium discoideum slug cDNA, clone SLG393.       46   1.5    1
(CU737586) Phaeodactylum tricornutum mRNA 5-prime sequence f...    46   1.5    1
(CU729866) Phaeodactylum tricornutum mRNA 5-prime sequence f...    46   1.5    1
(CU717104) Phaeodactylum tricornutum mRNA 5-prime sequence f...    46   1.5    1
(CU707884) Phaeodactylum tricornutum mRNA 5-prime sequence f...    46   1.5    1
(CU702886) Phaeodactylum tricornutum mRNA 5-prime sequence f...    46   1.5    1
(CU697610) Phaeodactylum tricornutum mRNA 5-prime sequence f...    46   1.5    1
(CT943844) Phaeodactylum tricornutum 5-PRIME EST from clone ...    46   1.5    1
(CT889120) Phaeodactylum tricornutum 5-PRIME EST from clone ...    46   1.5    1
(CT876479) Phaeodactylum tricornutum 5-PRIME EST from clone ...    46   1.5    1
(CT874363) Phaeodactylum tricornutum 5-PRIME EST from clone ...    46   1.5    1
(CT873006) Phaeodactylum tricornutum 5-PRIME EST from clone ...    46   1.5    1
(BJ382386) Dictyostelium discoideum cDNA clone:ddc44g14, 3' ...    46   1.5    1
(BE581738) kq51e10.y1 TBN95TM-SSR Strongyloides stercoralis ...    46   1.5    1
(FK073726) XABT132097.b1 Gateway compatible cien cDNA librar...    46   1.5    1
(FG287351) 1108770738534 New World Screwworm Egg 9261 ESTs C...    46   1.5    1
(FG282842) 1108383360865 New World Screwworm Egg 9261 ESTs C...    46   1.5    1
(FF790298) XABT86279.fwd Gateway compatible cien cDNA librar...    46   1.5    1
(EY176053) CBTI5365.g1_J22.ab1:P Triphysaria pusilla root ti...    46   1.5    1
(EX487651) HA_MX1_57g05_SP6 Lobster Multiple Tissues, Normal...    46   1.5    1
(CA997285) rg14f01.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    42   1.9    2
(EY381894) CAXA3738.rev CAXA Helobdella robusta Subtracted L...    38   2.2    2
(ER822756) PPTAH15TR Solanum tuberosum RHPOTKEY BAC ends Sol...    42   2.3    2
(ER851450) PPTFT22TF Solanum tuberosum RHPOTKEY BAC ends Sol...    42   2.3    2
(AC181946) Strongylocentrotus purpuratus clone R3-1008B10, W...    40   2.4    3
(CU633360) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.7    6
(EY332349) CAWY4797.fwd CAWY Helobdella robusta Subtracted E...    36   2.7    2
(EI383491) POTBB01TF Solanum tuberosum RHPOTKEY BAC ends Sol...    42   2.8    2
(EI821716) POTGL92TF Solanum tuberosum RHPOTKEY BAC ends Sol...    42   2.9    2
(AC196856) Medicago truncatula chromosome 7 BAC clone mth2-3...    42   3.7    2
(DU489006) 1098421162853 CHORI-243 Ovis aries genomic clone ...    34   3.9    2
(EY352514) CAWZ18861.rev CAWZ Helobdella robusta Primary Lat...    34   3.9    2
(BX284113) Zebrafish DNA sequence from clone CH211-247M3 in ...    44   5.8    1
(AF133300) Mus musculus MOR 3'Beta1, MOR 3'Beta2, MOR 3'Beta...    44   5.8    1
(AP008214) Oryza sativa (japonica cultivar-group) genomic DN...    44   5.8    1
(AP005245) Oryza sativa Japonica Group genomic DNA, chromoso...    44   5.8    1
(AP003883) Oryza sativa Japonica Group genomic DNA, chromoso...    44   5.8    1
(AM426608) Vitis vinifera contig VV78X010792.19, whole genom...    44   5.8    1
(AC215428) Solanum lycopersicum chromosome 2 clone C02HBa022...    44   5.8    1
(EA687282) Sequence 66161 from patent US 7365185.                  44   5.8    1
(CQ610304) Sequence 38062 from Patent WO0171042.                   44   5.8    1
(EU304615) Anopheles quadriannulatus isolate QUA23_B REL2 ge...    44   5.8    1
(DQ656524) Papilio zelicaon clone D224 microsatellite sequence.    44   5.8    1
(AE014298) Drosophila melanogaster chromosome X, complete se...    44   5.8    1
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    44   5.8    1
(AC023705) Drosophila melanogaster X BAC RP98-7L6 (Roswell P...    44   5.8    1
(AC021856) Homo sapiens BAC clone RP11-553E5 from 4, complet...    44   5.8    1
(CU928183) Brassica rapa subsp. pekinensis clone KBrH026A01,...    44   5.8    1
(AC079636) Mus musculus clone RP23-16H9, WORKING DRAFT SEQUE...    44   5.8    1
(AC068088) Homo sapiens chromosome 4 clone RP11-565E18 map 4...    44   5.8    1
(AC232500) Brassica rapa subsp. pekinensis clone KBrB055E21,...    44   5.8    1
(AC180726) Strongylocentrotus purpuratus clone R3-3083J2, WO...    44   5.8    1
(AC167029) Bos taurus clone CH240-187F5, WORKING DRAFT SEQUE...    44   5.8    1
(AC012987) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   5.8    1
(FH130157) CHO_OF3500xf14f1.ab1 CHO_OF3 Nicotiana tabacum ge...    44   5.8    1
(ER850446) POTJN45TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   5.8    1
(CW693152) OG_BBa0052D13.r OG_BBa Oryza glaberrima genomic c...    44   5.8    1
(CW424174) fsbb001f134g03f0 Sorghum methylation filtered lib...    44   5.8    1
(BZ475810) BONQF01TF BO_1.6_2_KB_tot Brassica oleracea genom...    44   5.8    1
(BZ042580) ljt11g10.b1 B.oleracea002 Brassica oleracea genom...    44   5.8    1
(BH603228) BOGNR14TF BOGN Brassica oleracea genomic clone BO...    44   5.8    1
(BH591189) BOGMT53TF BOGM Brassica oleracea genomic clone BO...    44   5.8    1
(DY966678) CLSM17831.b1_N17.ab1 CLS(LMS) lettuce sativa Lact...    44   5.8    1
(DN312160) PL06012A1G01 cDNA from juvenile hermaphodites Sch...    44   5.8    1
(DB696053) Solanum lycopersicum cDNA, clone: LEFL1056BG04, 5...    44   5.8    1
(DB688436) Solanum lycopersicum cDNA, clone: LEFL1033AB08, 5...    44   5.8    1
(DB679552) Solanum lycopersicum cDNA, clone: LEFL1004CC11, 5...    44   5.8    1
(CN768769) taf19a09.x1 Hydra EST Darmstadt I Hydra magnipapi...    44   5.8    1
(BB930387) Trifolium pratense cDNA clone:RCC02026.                 44   5.8    1
(FG296422) 1108793252569 New World Screwworm Larvae 9387 EST...    44   5.8    1
(FG284529) 1108770671713 New World Screwworm Egg 9261 ESTs C...    44   5.8    1
(FC846447) CBHN4235.fwd CBHN Metridium senile tentacle Metri...    44   5.8    1
(AW398111) EST297994 L. pennellii trichome, Cornell Universi...    44   5.8    1
(EY337104) CAWY811.fwd CAWY Helobdella robusta Subtracted Ea...    44   5.8    1
(EY336934) CAWY8011.fwd CAWY Helobdella robusta Subtracted E...    44   5.8    1
(EY332280) CAWY4754.fwd CAWY Helobdella robusta Subtracted E...    44   5.8    1
(EX140714) BR124544 primary leaf cDNA library KLPS Brassica ...    44   5.8    1
(EX030014) BR014658 callus cDNA library KBCG Brassica rapa s...    44   5.8    1
(EV477410) Fc_nor_24D02_M13F Folsomia candida normalized cDN...    44   5.8    1
(EV197580) 0098733 Brassica napus Cold acclimation - light B...    44   5.8    1
(DX953997) CHORI105-48C4.TF CHORI105.pEpiFOS5 Trypanosoma cr...    34   8.4    2
(AC108576) Rattus norvegicus clone CH230-228K24, WORKING DRA...    38   9.2    2
(DX953998) CHORI105-48C4.TF.1 CHORI105.pEpiFOS5 Trypanosoma ...    34   9.2    2

>(AY392444) Dictyostelium discoideum RNA-binding protein gene,
            complete cds.
          Length = 3658

 Score =  204 bits (103), Expect(4) = e-130
 Identities = 103/103 (100%)
 Strand = Plus / Plus


Query: 1    aagaaaaaccaataaatataaatggtaaggttttgtcattaagttttgcaaaaccaatag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2335 aagaaaaaccaataaatataaatggtaaggttttgtcattaagttttgcaaaaccaatag 2394


Query: 61   ataaaaaattaagatccgataagattcaaagaaaattacaaag 103
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2395 ataaaaaattaagatccgataagattcaaagaaaattacaaag 2437

 Score =  157 bits (79), Expect(4) = e-130
 Identities = 79/79 (100%)
 Strand = Plus / Plus


Query: 177  gggaatctatttggaagtacatcttttaatcctcatattccccaacattataaaaactca 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2511 gggaatctatttggaagtacatcttttaatcctcatattccccaacattataaaaactca 2570


Query: 237  agtgtacattataaccaac 255
            |||||||||||||||||||
Sbjct: 2571 agtgtacattataaccaac 2589

 Score =  153 bits (77), Expect(4) = e-130
 Identities = 80/81 (98%)
 Strand = Plus / Plus


Query: 412  aacttttacagcaacaacaacaacttcaaccccaacaattatatttcaattatccgaact 471
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2746 aacttttacagcaacaacaacaacttcaaccccaacaattatattttaattatccgaact 2805


Query: 472  ccttaaataatggaaattttc 492
            |||||||||||||||||||||
Sbjct: 2806 ccttaaataatggaaattttc 2826

 Score = 42.1 bits (21), Expect(4) = e-130
 Identities = 21/21 (100%)
 Strand = Plus / Plus


Query: 555  tttatatattctttccaaacg 575
            |||||||||||||||||||||
Sbjct: 2889 tttatatattctttccaaacg 2909

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 421,846,776
Number of extensions: 29409362
Number of successful extensions: 3767591
Number of sequences better than 10.0: 111
Length of query: 575
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 552
Effective length of database: 99,442,330,388
Effective search space: 54892166374176
Effective search space used: 54892166374176
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04547-1 (Contig-U04547-1Q) /CSM_Contig/Contig-U04547-1Q.Seq.d
         (575 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 474,327,886
Number of extensions: 5438754
Number of successful extensions: 7832
Number of sequences better than 10.0: 0
Number of HSP's gapped: 7832
Number of HSP's successfully gapped: 0
Length of query: 191
Length of database: 1,061,185,681
Length adjustment: 121
Effective length of query: 70
Effective length of database: 665,703,473
Effective search space: 46599243110
Effective search space used: 46599243110
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.82  gvh: 0.46  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U04547-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0