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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U04605-1
Contig ID Contig-U04605-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U04605-1 (Contig-U04605-1Q) /CSM_Contig/Contig-U04605-1Q.Seq.d
AAAAAAGATATTCTCATATTATTTGTTTTTTTATTATTATTTTATTTCTA
AAAAGAGTTTATAGAGATAAAGGTTAAAACAAACATATAAAGATATTTTT
TTTTAAAAAAAAAAAAAAGGAATATTAAAAAAAAAAAAAAATAAAAATAA
AAAAAATAATACATTCATATTAGAAAAAAAAAAAAAAAAAAAGAAATGAA
AAGATTTTTTGGTGTTTCAAACAACCCAACCAGCCCCAACTTTAGATGAG
GCAACAAAAAGAATTGGTGGAAGGATGGGACAAATGGATGAAAAAATAAA
TGGATTAAATCAAGAATTATTAGCATATGATAAACAAATAAAAGCAACTA
GACCAGGTCCAGCACAGAATGCAATTAAACAAAAAGCAATTAGAGTATTA
CAACAAAAGAAAATGTATGAAAGACAAAGAGACCAAATGGCAAGTACATC
ATTTAATATGGAGCAAACCAAGTTTGCCACAGAGTCAATGAGAGATACAA
TTACAACAGTTTCAGCAATGAAACAGGGTGCCAAAGACATGAAAACACAA
TTAAAACATATAAAAATTGAAGATGTAGACGATATGCAAAGAATGAAATG
CAAGATTTATTAGATTATAACGGATGAAATTCAAGAATCATTAGGTAGAG
CTTATCAAACTCCAGATACTTTAGATGAATCAGAGTTGGAGGCTGAATTA
ATGTCAATGGGTGAAGAATTAGAATTGGAGAGCCTCAATGCCTTCTTATT
TAATGACACCATCAGTTCCAACTACTGATCCACATCAATCAAGTGTTGAT
GAATATGGTTTACCTATAGGCCAAGAAGCATCACAACAAGTTGTTTAA
Gap no gap
Contig length 848
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 936174
End point 935401
Strand (PLUS/MINUS) MINUS
Number of clones 4
Number of EST 6
Link to clone list U04605
List of clone(s) 

est1=VSG434F,1,136
est2=SSG360F,15,553
est3=VSG434Z,173,799
est4=VSC575Z,241,847
est5=SSB758Z,284,844
est6=SSG360Z,562,844
Translated Amino Acid sequence 
kkifsyylffyyyfiskksl*r*rlkqtykdiff*kkkkgilkkkknknkknntfilekk
kkkkk*KDFLVFQTTQPAPTLDEATKRIGGRMGQMDEKINGLNQELLAYDKQIKATRPGP
AQNAIKQKAIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRDTITTVSAMKQGAKDM
KTQLKHIKIEDVDDMQRMKCKIY*iitdeiqeslgrayqtpdtldeseleaelmsmgeel
eleslnaflfndtissny*stsikc**iwftyrprsittscl
Translated Amino Acid sequence (All Frames) 
Frame A:
kkdililfvflllfyf*kefieikvktni*ryfflkkkkrnikkkkk*k*kk*yihirkk
kkkkemkrffgvsnnptspnfr*gnkknwwkdgtng*knkwiksriisi**tnksn*trs
stecn*tksn*sittkenv*ktkrpngkyii*yganqvchrvnerynynsfsnetgcqrh
entiktykn*rcrryaknemqdlldyng*nsriir*slsnsryfr*irvgg*invng*ri
rigepqclli**hhqfqllihinqvlmnmvyl*akkhhnklf


Frame B:
kkifsyylffyyyfiskksl*r*rlkqtykdiff*kkkkgilkkkknknkknntfilekk
kkkkk*KDFLVFQTTQPAPTLDEATKRIGGRMGQMDEKINGLNQELLAYDKQIKATRPGP
AQNAIKQKAIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRDTITTVSAMKQGAKDM
KTQLKHIKIEDVDDMQRMKCKIY*iitdeiqeslgrayqtpdtldeseleaelmsmgeel
eleslnaflfndtissny*stsikc**iwftyrprsittscl


Frame C:
kryshiicffiiilflkrvyrdkg*nkhikifffkkkkkey*kkkkikikkiihsy*kkk
kkkrnekifwcfkqpnqpql*mrqqkelvegwdkwmkk*md*ikny*hmink*kqldqvq
hrmqlnkkqleyynkrkcmkdketkwqvhhliwskpslpqsq*eiqlqqfqq*nrvpkt*
khn*ni*klkm*ticke*narfirl*rmkfknh*veliklqil*mnqswrln*cqwvkn*
nwrasmpsylmtpsvpttdphqssvdeyglpigqeasqqvv*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U04605-1 (Contig-U04605-1Q)
/CSM_Contig/Contig-U04605-1Q.Seq.d
         (848 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U04605-1 (Contig-U04605-1Q) /CSM_Contig/Conti...  1300  0.0
Contig-U05482-1 (Contig-U05482-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U14838-1 (Contig-U14838-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U12244-1 (Contig-U12244-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U08935-1 (Contig-U08935-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U00515-1 (Contig-U00515-1Q) /CSM_Contig/Conti...    34  0.24
Contig-U14866-1 (Contig-U14866-1Q) /CSM_Contig/Conti...    32  0.93
Contig-U14831-1 (Contig-U14831-1Q) /CSM_Contig/Conti...    32  0.93
Contig-U14801-1 (Contig-U14801-1Q) /CSM_Contig/Conti...    32  0.93

>Contig-U04605-1 (Contig-U04605-1Q) /CSM_Contig/Contig-U04605-1Q.Seq.d
          Length = 848

 Score = 1300 bits (656), Expect = 0.0
 Identities = 656/656 (100%)
 Strand = Plus / Plus

                                                                       
Query: 193 gaaatgaaaagattttttggtgtttcaaacaacccaaccagccccaactttagatgaggc 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaaatgaaaagattttttggtgtttcaaacaacccaaccagccccaactttagatgaggc 252

                                                                       
Query: 253 aacaaaaagaattggtggaaggatgggacaaatggatgaaaaaataaatggattaaatca 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aacaaaaagaattggtggaaggatgggacaaatggatgaaaaaataaatggattaaatca 312

                                                                       
Query: 313 agaattattagcatatgataaacaaataaaagcaactagaccaggtccagcacagaatgc 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agaattattagcatatgataaacaaataaaagcaactagaccaggtccagcacagaatgc 372

                                                                       
Query: 373 aattaaacaaaaagcaattagagtattacaacaaaagaaaatgtatgaaagacaaagaga 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aattaaacaaaaagcaattagagtattacaacaaaagaaaatgtatgaaagacaaagaga 432

                                                                       
Query: 433 ccaaatggcaagtacatcatttaatatggagcaaaccaagtttgccacagagtcaatgag 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ccaaatggcaagtacatcatttaatatggagcaaaccaagtttgccacagagtcaatgag 492

                                                                       
Query: 493 agatacaattacaacagtttcagcaatgaaacagggtgccaaagacatgaaaacacaatt 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agatacaattacaacagtttcagcaatgaaacagggtgccaaagacatgaaaacacaatt 552

                                                                       
Query: 553 aaaacatataaaaattgaagatgtagacgatatgcaaagaatgaaatgcaagatttatta 612
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaaacatataaaaattgaagatgtagacgatatgcaaagaatgaaatgcaagatttatta 612

                                                                       
Query: 613 gattataacggatgaaattcaagaatcattaggtagagcttatcaaactccagatacttt 672
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gattataacggatgaaattcaagaatcattaggtagagcttatcaaactccagatacttt 672

                                                                       
Query: 673 agatgaatcagagttggaggctgaattaatgtcaatgggtgaagaattagaattggagag 732
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 agatgaatcagagttggaggctgaattaatgtcaatgggtgaagaattagaattggagag 732

                                                                       
Query: 733 cctcaatgccttcttatttaatgacaccatcagttccaactactgatccacatcaatcaa 792
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cctcaatgccttcttatttaatgacaccatcagttccaactactgatccacatcaatcaa 792

                                                                   
Query: 793 gtgttgatgaatatggtttacctataggccaagaagcatcacaacaagttgtttaa 848
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gtgttgatgaatatggtttacctataggccaagaagcatcacaacaagttgtttaa 848


 Score =  113 bits (57), Expect = 3e-25
 Identities = 57/57 (100%)
 Strand = Plus / Plus

                                                                    
Query: 48  ctaaaaagagtttatagagataaaggttaaaacaaacatataaagatattttttttt 104
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  ctaaaaagagtttatagagataaaggttaaaacaaacatataaagatattttttttt 104


 Score = 32.2 bits (16), Expect = 0.93
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                          
Query: 1  aaaaaagatattctca 16
          ||||||||||||||||
Sbjct: 1  aaaaaagatattctca 16


>Contig-U05482-1 (Contig-U05482-1Q) /CSM_Contig/Contig-U05482-1Q.Seq.d
          Length = 898

 Score = 40.1 bits (20), Expect = 0.004
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 308 aatcaagaattattagcatatgat 331
           ||||||||||||||||||| ||||
Sbjct: 266 aatcaagaattattagcatttgat 289


>Contig-U14838-1 (Contig-U14838-1Q) /CSM_Contig/Contig-U14838-1Q.Seq.d
          Length = 1096

 Score = 36.2 bits (18), Expect = 0.060
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 50  aaaaagagtttatagagataaa 71
           ||||||||||| ||||||||||
Sbjct: 481 aaaaagagtttttagagataaa 502


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,320
Number of Sequences: 6905
Number of extensions: 12320
Number of successful extensions: 1063
Number of sequences better than 10.0: 104
length of query: 848
length of database: 5,674,871
effective HSP length: 16
effective length of query: 832
effective length of database: 5,564,391
effective search space: 4629573312
effective search space used: 4629573312
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 6.26
Homology vs DNA 
Query= Contig-U04605-1 (Contig-U04605-1Q) /CSM_Contig/Contig-U04605-1Q.Seq.d
         (848 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU266476) Dictyostelium discoideum vegetative cDNA clone:VS...  1066   0.0    2
(AU262652) Dictyostelium discoideum vegetative cDNA clone:VS...   692   0.0    4
(AU037316) Dictyostelium discoideum slug cDNA, clone SSB758.      593   0.0    4
(C94065) Dictyostelium discoideum slug cDNA, clone SSG360.        234   e-126  4
(AU073202) Dictyostelium discoideum slug cDNA, clone SSG360.       96   4e-40  3
(AU266475) Dictyostelium discoideum vegetative cDNA clone:VS...    96   4e-19  2
(CZ538103) SRAA-aad17e09.b1 Strongyloides ratti whole genome...    38   3e-06  3
(BG225801) kp72a11.y1 TBN95TM-SSFH Strongyloides stercoralis...    38   8e-05  4
(BG225516) kp68g09.y1 TBN95TM-SSFH Strongyloides stercoralis...    38   8e-05  4
(CN554150) tae33f11.y1 Hydra EST Darmstadt I Hydra magnipapi...    40   1e-04  2
(CX830573) ACAC-aaa11d08.g1 Hydra EST UCI 7 Hydra magnipapil...    38   5e-04  2
(CN623529) tae08a10.y1 Hydra EST Darmstadt I Hydra magnipapi...    44   5e-04  2
(CD285683) tab26g10.x1 Hydra EST -III Hydra magnipapillata c...    38   6e-04  2
(BW212372) Ciona intestinalis cDNA, clone:cieg070d10, 5' end...    42   0.002  2
(FF767574) XABT71071.fwd Gateway compatible cien cDNA librar...    42   0.002  2
(BW342436) Ciona intestinalis cDNA, clone:ciem821i18, 5'end,...    42   0.002  2
(AV972045) Ciona intestinalis cDNA, clone:cieg31j20, 5' end,...    42   0.002  2
(AV861937) Ciona intestinalis cDNA, clone:rcieg31j20, 3' end...    42   0.002  2
(EY260057) BF01007X1D06.f1 Normalized subtracted keck librar...    38   0.008  2
(AK222321) Ciona intestinalis cDNA, clone:cibd077f12, full i...    38   0.028  2
(AV995919) Ciona intestinalis cDNA, clone:citb42m08, 5' end,...    38   0.028  3
(BW342192) Ciona intestinalis cDNA, clone:ciem820m03, 5'end,...    38   0.028  3
(BW326647) Ciona intestinalis cDNA, clone:cidg825g02, 5'end,...    38   0.028  3
(BW348938) Ciona intestinalis cDNA, clone:ciem840p24, 5'end,...    38   0.028  3
(BW214956) Ciona intestinalis cDNA, clone:cieg078e20, 5' end...    38   0.028  3
(AK174163) Ciona intestinalis cDNA, clone:cibd021o02, full i...    38   0.028  2
(BP006358) Ciona intestinalis cDNA, clone:ciad40o24, 5' end,...    38   0.029  3
(BW501609) Ciona intestinalis cDNA, clone:cima005f17, 3'end,...    38   0.029  2
(BW499335) Ciona intestinalis cDNA, clone:cima049e06, 3'end,...    38   0.029  2
(FF897102) CBWU31053.b1 Yutaka Satou unpublished cDNA librar...    38   0.029  2
(FF734525) XABT47937.fwd Gateway compatible cien cDNA librar...    38   0.029  2
(FF935196) CBWU71314.b1 Yutaka Satou unpublished cDNA librar...    38   0.029  2
(BW004497) Ciona intestinalis cDNA, clone:rcibd021o02, 3' en...    38   0.029  2
(BW105070) Ciona intestinalis cDNA, clone:rcicl104o02, 3' en...    38   0.029  2
(BW376536) Ciona intestinalis cDNA, clone:cidg810j16, 3'end,...    38   0.029  2
(BW456931) Ciona intestinalis cDNA, clone:cijv024e12, 3'end,...    38   0.029  2
(BW401000) Ciona intestinalis cDNA, clone:ciem835d01, 3'end,...    38   0.029  2
(BW399542) Ciona intestinalis cDNA, clone:ciem830k08, 3'end,...    38   0.029  2
(BW380650) Ciona intestinalis cDNA, clone:cidg825g02, 3'end,...    38   0.029  2
(FF929939) CBWU67291.b1 Yutaka Satou unpublished cDNA librar...    38   0.029  2
(BW390894) Ciona intestinalis cDNA, clone:ciem803p22, 3'end,...    38   0.029  2
(BW419397) Ciona intestinalis cDNA, clone:cima834f17, 3'end,...    38   0.029  2
(BW402966) Ciona intestinalis cDNA, clone:ciem840p24, 3'end,...    38   0.029  2
(FF806022) XABT96731.fwd Gateway compatible cien cDNA librar...    38   0.029  2
(FF926894) CBWU65422.b1 Yutaka Satou unpublished cDNA librar...    38   0.029  2
(FF906171) CBWU37397.b1 Yutaka Satou unpublished cDNA librar...    38   0.029  2
(CN553879) tae33f11.x1 Hydra EST Darmstadt I Hydra magnipapi...    38   0.029  2
(BW432871) Ciona intestinalis cDNA, clone:cijv024e12, 5'end,...    38   0.029  2
(BW045315) Ciona intestinalis cDNA, clone:cibd058f07, 5' end...    38   0.029  2
(BW347007) Ciona intestinalis cDNA, clone:ciem835d01, 5'end,...    38   0.029  2
(BW216856) Ciona intestinalis cDNA, clone:cieg084c07, 5' end...    38   0.029  2
(BW033062) Ciona intestinalis cDNA, clone:cibd021o02, 5' end...    38   0.029  2
(BP017141) Ciona intestinalis cDNA, clone:ciad67m21, 5' end,...    38   0.029  2
(BW311066) Ciona intestinalis cDNA, clone:ciht009i24, 5' end...    38   0.029  2
(FK142709) XABT175533.b1 Gateway compatible cien cDNA librar...    38   0.029  2
(BW216532) Ciona intestinalis cDNA, clone:cieg083d08, 5' end...    38   0.029  3
(BW239553) Ciona intestinalis cDNA, clone:cicl104o02, 5' end...    38   0.029  2
(FF794409) XABT89021.fwd Gateway compatible cien cDNA librar...    38   0.029  2
(BW345458) Ciona intestinalis cDNA, clone:ciem830k08, 5'end,...    38   0.029  2
(BW193158) Ciona intestinalis cDNA, clone:ciad098o13, 5' end...    38   0.029  2
(BW322602) Ciona intestinalis cDNA, clone:cidg810j16, 5'end,...    38   0.029  2
(FF970851) CBWU93711.b1 Yutaka Satou unpublished cDNA librar...    38   0.029  2
(BP017957) Ciona intestinalis cDNA, clone:ciad58d11, 5' end,...    38   0.029  2
(BW364972) Ciona intestinalis cDNA, clone:cima834f17, 5'end,...    38   0.029  3
(BW336765) Ciona intestinalis cDNA, clone:ciem803p22, 5'end,...    38   0.029  2
(BW334993) Ciona intestinalis cDNA, clone:cidg849k22, 5'end,...    38   0.029  2
(AV995180) Ciona intestinalis cDNA, clone:citb40e11, 5' end,...    38   0.029  2
(CN633461) taf11b04.y1 Hydra EST Darmstadt I Hydra magnipapi...    38   0.030  2
(AV671681) Ciona intestinalis cDNA clone:citb1a20 : 5' end, ...    38   0.030  2
(AV398513) Bombyx mori cDNA clone:NV021898.                        52   0.036  1
(DC548300) Bombyx mori cDNA, clone:E_FL_phe-_13J03_F_0, 5' e...    52   0.036  1
(DC547607) Bombyx mori cDNA, clone:E_FL_phe-_11C09_F_0, 5' e...    52   0.036  1
(CK562179) rswpb0_005129.y1 swp Bombyx mori cDNA, mRNA seque...    52   0.036  1
(CK560251) rswpb0_002530.y1 swp Bombyx mori cDNA, mRNA seque...    52   0.036  1
(CK559317) rswpb0_001276.y1 swp Bombyx mori cDNA, mRNA seque...    52   0.036  1
(CK546448) rswhb0_018492.y1 swh Bombyx mori cDNA, mRNA seque...    52   0.036  1
(CK543450) rswhb0_011209.y1 swh Bombyx mori cDNA, mRNA seque...    52   0.036  1
(CK539876) rswhb0_003007.y1 swh Bombyx mori cDNA, mRNA seque...    52   0.036  1
(CK515264) rswjb0_002512.y1 swj Bombyx mori cDNA, mRNA seque...    52   0.036  1
(CK486890) rswab0_003778.y1 swa Bombyx mori cDNA, mRNA seque...    52   0.036  1
(BY928103) Bombyx mori cDNA, clone:E_EL_fcP8_13H10_R_0, 3' e...    52   0.036  1
(BE224313) kp59h09.y1 TBN95TM-SSFH Strongyloides stercoralis...    38   0.063  3
(BE029930) kp36g07.y1 TBN95TM-SSFH Strongyloides stercoralis...    38   0.063  3
(BE030076) kp38e05.y1 TBN95TM-SSFH Strongyloides stercoralis...    38   0.088  3
(BE223993) kp53e10.y1 TBN95TM-SSFH Strongyloides stercoralis...    38   0.093  3
(BE224469) kp63d03.y1 TBN95TM-SSFH Strongyloides stercoralis...    38   0.11   3
(FF749703) XABT58716.fwd Gateway compatible cien cDNA librar...    36   0.11   2
(FK080167) XABT136137.b1 Gateway compatible cien cDNA librar...    36   0.11   2
(FK070865) XABT130387.b1 Gateway compatible cien cDNA librar...    36   0.11   2
(FF799055) XABT92141.fwd Gateway compatible cien cDNA librar...    36   0.11   2
(FK203474) XABT213083.b1 Gateway compatible cien cDNA librar...    36   0.11   2
(FK106368) XABT153390.b1 Gateway compatible cien cDNA librar...    36   0.11   2
(FK139743) XABT173708.b1 Gateway compatible cien cDNA librar...    36   0.11   2
(FK188496) XABT203723.b1 Gateway compatible cien cDNA librar...    36   0.11   2
(BE029006) kp23e04.y1 TBN95TM-SSFH Strongyloides stercoralis...    38   0.11   2
(AC009794) Homo sapiens chromosome 4 clone RP11-343C10 map 4...    42   0.16   4
(FD962871) RR1G858TF RR1(CS) Raphanus raphanistrum subsp. ma...    40   0.35   2
(FD970763) RR2G681TF RR2(MS) Raphanus raphanistrum subsp. ra...    40   0.38   2
(EV574729) RR4BJ39JQ RR4(PB) Raphanus raphanistrum subsp. la...    40   0.39   2
(BW396552) Ciona intestinalis cDNA, clone:ciem821i18, 3'end,...    34   0.41   2
(EV570444) RR4BJ39TF RR4(PB) Raphanus raphanistrum subsp. la...    40   0.46   2
(AL008970) Plasmodium falciparum MAL3P4.                           40   0.47   5
(BT005859) Arabidopsis thaliana At3g10640 gene, complete cds.      34   0.51   3
(CQ804434) Sequence 845 from Patent WO2004035798.                  34   0.51   3
(BH708707) BOHYB12TR BO_2_3_KB Brassica oleracea genomic clo...    48   0.55   1
(DY324083) OB_EEa05L18.r OB_EEa Ocimum basilicum cDNA clone ...    48   0.55   1
(DB613718) Halocynthia roretzi cDNA clone:mae34o17, 5' end.        48   0.55   1
(DB582968) Halocynthia roretzi cDNA clone:ma315l14, 5' end.        48   0.55   1
(FG219082) Aaov02255 Antheraea assama fifth instar larval ov...    48   0.55   1
(FG207294) Aabr04018 Antheraea assama fifth instar larval br...    48   0.55   1
(BG225644) kp70c03.y1 TBN95TM-SSFH Strongyloides stercoralis...    34   0.79   3
(CF652016) 28-L020580-066-004-H08-SP6P MPIZ-ADIS-066 Arabido...    34   0.80   3
(AK228223) Arabidopsis thaliana mRNA for hypothetical protei...    34   0.84   3
(AC146892) Dasypus novemcinctus clone VMRC5-372F24, WORKING ...    40   1.1    4
(AC125131) Mus musculus BAC clone RP24-310B22 from chromosom...    36   1.2    2
(AC215442) Solanum lycopersicum chromosome 2 clone C02SLe000...    38   1.3    6
(AF006064) Fowlpox virus M long terminal repeat, complete se...    38   1.3    2
(BX823662) Arabidopsis thaliana Full-length cDNA Complete se...    34   1.3    3
(BW396307) Ciona intestinalis cDNA, clone:ciem820m03, 3'end,...    32   1.5    2
(FF503616) G709P5167RH6.T0 Acorn worm normalized neurula pEx...    32   1.5    2
(CW834242) OP__Ba0093K15.f OP__Ba Oryza punctata genomic clo...    36   2.2    3
(AC123682) Mus musculus chromosome 15, clone RP23-288J22, co...    46   2.2    1
(BX072548) Oryza sativa chromosome 11, . BAC OSJNBa0029D01 o...    46   2.2    1
(BX000503) Oryza sativa chromosome 12, . BAC OSJNBb0077A02 o...    46   2.2    1
(BX000496) Oryza sativa chromosome 12, . BAC OSJNBa0096E03 o...    46   2.2    1
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    46   2.2    1
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN...    46   2.2    1
(AC120536) Oryza sativa Japonica Group chromosome 11 clone O...    46   2.2    1
(EA698391) Sequence 77270 from patent US 7365185.                  46   2.2    1
(EA692497) Sequence 71376 from patent US 7365185.                  46   2.2    1
(EA659637) Sequence 38516 from patent US 7365185.                  46   2.2    1
(EA628054) Sequence 6933 from patent US 7365185.                   46   2.2    1
(AC134022) Rattus norvegicus clone CH230-87O18, *** SEQUENCI...    46   2.2    1
(AC131821) Rattus norvegicus clone CH230-248C12, *** SEQUENC...    46   2.2    1
(AC131352) Rattus norvegicus clone CH230-71L19, WORKING DRAF...    46   2.2    1
(AC129845) Rattus norvegicus clone CH230-329D22, WORKING DRA...    46   2.2    1
(AC128928) Rattus norvegicus clone CH230-363K7, *** SEQUENCI...    46   2.2    1
(AC124835) Oryza sativa Japonica Group chromosome 5 clone OJ...    46   2.2    1
(AC109680) Rattus norvegicus clone CH230-87P18, *** SEQUENCI...    46   2.2    1
(AC102793) Mus musculus clone RP23-225G21, LOW-PASS SEQUENCE...    46   2.2    1
(AC094929) Rattus norvegicus clone CH230-6D15, *** SEQUENCIN...    46   2.2    1
(AZ403411) 1M0171A17F Mouse 10kb plasmid UUGC1M library Mus ...    46   2.2    1
(EI099807) hgv0004bd04.b1 hgv Oryza rufipogon genomic clone ...    46   2.2    1
(DN793448) Pm_Admus_13D04_T3 Helene and Hannah Pecten maximu...    46   2.2    1
(DB766990) Apis mellifera head cDNA, RIKEN full-length enric...    46   2.2    1
(DB766622) Apis mellifera head cDNA, RIKEN full-length enric...    46   2.2    1
(FG291142) 1108793330728 New World Screwworm Egg 9261 ESTs C...    46   2.2    1
(FG290464) 1108793321772 New World Screwworm Egg 9261 ESTs C...    46   2.2    1
(FG288754) 1108793276247 New World Screwworm Egg 9261 ESTs C...    46   2.2    1
(FG285961) 1108770710727 New World Screwworm Egg 9261 ESTs C...    46   2.2    1
(CT030663) Mouse DNA sequence from clone RP23-233E5 on chrom...    36   2.6    4
(AP003288) Oryza sativa Japonica Group genomic DNA, chromoso...    38   3.6    2
(AC103312) Rattus norvegicus clone CH230-121E7, *** SEQUENCI...    32   4.0    2
(AC103054) Rattus norvegicus clone CH230-158E13, WORKING DRA...    32   4.1    2
(CN207813) Tor8261y2 Gametophyte rehydration Library Syntric...    34   4.1    3
(BU804172) SJFBHD02 SJF Schistosoma japonicum cDNA, mRNA seq...    40   5.4    2
(FK059859) XABT123757.b1 Gateway compatible cien cDNA librar...    32   5.6    2
(CZ539053) SRAA-aad23d08.b1 Strongyloides ratti whole genome...    34   5.6    2
(ER637058) SB_BBc84-E01.F SB_BBc Sorghum bicolor genomic 5',...    42   5.7    2
(EI332168) GM_WBc0072D05.r GM_WBc Glycine max genomic clone ...    30   6.0    3
(AC233494) Solanum tuberosum chromosome 5 clone RH126H02, co...    38   6.1    4
(CO255428) WS00825.B21_B15 WS-X-N-A-9 Picea glauca cDNA clon...    34   6.5    2
(AC150285) Mus musculus BAC clone RP23-340J3 from 12, comple...    36   6.8    4
(EI355529) GM_WBc0106J11.r GM_WBc Glycine max genomic clone ...    30   7.1    3
(ER964243) SOOA538JR LargeInsertSoybeanGenLibBuild4 Glycine ...    30   7.5    3
(CU469087) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   7.5    3
(ED786419) GM_WBb0167O04.r GM_WBb Glycine max genomic clone ...    30   8.4    3
(AC079531) Mus musculus clone RP23-345C6, WORKING DRAFT SEQU...    38   8.4    6
(AL732391) Mouse DNA sequence from clone RP23-364H13 on chro...    44   8.7    1
(AC146896) Mus musculus chromosome X clone xcat-28-97f16, co...    44   8.7    1
(AC093447) Mus musculus strain 129/Sv clone ct7-25g12 map X,...    44   8.7    1
(AC206551) Pongo abelii BAC clone CH276-44A10 from chromosom...    44   8.7    1
(AC200523) MACACA MULATTA BAC clone CH250-549O22 from chromo...    44   8.7    1
(EU382997) Populus euphratica outward rectifying potassium c...    44   8.7    1
(AJ271446) Populus tremula x Populus tremuloides mRNA for ou...    44   8.7    1
(AC214213) Populus trichocarpa clone POP024-E15, complete se...    44   8.7    1
(CQ608906) Sequence 36664 from Patent WO0171042.                   44   8.7    1
(BD061520) Genome DNA of symbiotic bacteria of aphid.              44   8.7    1
(AR409405) Sequence 1 from patent US 6632935.                      44   8.7    1
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    44   8.7    1
(AC093199) Drosophila melanogaster, chromosome 2L, region 33...    44   8.7    1
(AC006240) Drosophila melanogaster, chromosome 2L, region 33...    44   8.7    1
(AL590487) Human DNA sequence from clone RP11-212K13 on chro...    44   8.7    1
(AC026470) Homo sapiens chromosome 16 clone RP11-44I10, comp...    44   8.7    1
(AC023813) Homo sapiens chromosome 16 clone CTC-527H23, comp...    44   8.7    1
(AC151518) Dasypus novemcinctus clone VMRC5-69F10, WORKING D...    44   8.7    1
(AC095778) Rattus norvegicus clone CH230-9O14, WORKING DRAFT...    44   8.7    1
(FP102921) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   8.7    1
(CU856108) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(CU855846) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(CU467952) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(CU151859) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   8.7    1
(AL358353) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   8.7    1
(AC206574) Pongo abelii chromosome 15 clone CH276-311I24, WO...    44   8.7    1
(AC196360) Dasypus novemcinctus clone VMRC5-388P18, WORKING ...    44   8.7    1
(AC020335) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   8.7    1
(AC018785) Homo sapiens clone RP11-21J4, WORKING DRAFT SEQUE...    44   8.7    1
(AC009536) Drosophila melanogaster strain y chromosome 2 clo...    44   8.7    1
(EK163917) 1095458043105 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.7    1
(EJ482668) 1095403479603 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.7    1
(EJ402274) 1093012063233 Global-Ocean-Sampling_GS-28-01-01-1...    44   8.7    1
(AL099268) Drosophila melanogaster genome survey sequence T7...    44   8.7    1
(CZ253508) LQCYB04TV American Alligator BAC Library Alligato...    44   8.7    1
(CW760296) OG_BBa0068O20.f OG_BBa Oryza glaberrima genomic c...    44   8.7    1
(CT124659) Sus scrofa genomic clone PigE-179A5, genomic surv...    44   8.7    1
(CR877701) Sus scrofa BES.                                         44   8.7    1
(CG975075) MBEBF68TF mth2 Medicago truncatula genomic clone ...    44   8.7    1
(CG933722) MBEJO33TRB mth2 Medicago truncatula genomic clone...    44   8.7    1
(CC483433) CH240_312O21.TARBAC13P2 CHORI-240 Bos taurus geno...    44   8.7    1
(EH736208) CNMM9294.b1_K19.ab1 CNM(LMS) spotted knapweed Cen...    44   8.7    1
(EE480423) BNYS6DCT_UP_031_G10_06MAY2005_068 Brassica napus ...    44   8.7    1
(EE448700) 75ETGS60_UP_011_A03_03MAY2005_031 75ETGS60 Brassi...    44   8.7    1
(EE430967) 34ETGS48_UP_022_B12_09FEB2005_094 Brassica napus ...    44   8.7    1
(CV277426) WS0143.B21_I23 PTxD-IL-A-5 Populus trichocarpa x ...    44   8.7    1
(AM208268) Paracentrotus lividus EST, clone MPMGp1174M0614Q,...    44   8.7    1
(CN733604) 25RDBNM_UP_013_H12_15JAN2004_082 Brassica napus 2...    44   8.7    1
(CN584826) USDA-FP_127895 Acyrthosiphon pisum, Pea Aphid Acy...    44   8.7    1
(CK545233) rswhb0_015985.y1 swh Bombyx mori cDNA, mRNA seque...    44   8.7    1
(CK528856) rswfa0_008120.y1 swf Bombyx mori cDNA, mRNA seque...    44   8.7    1
(CK501930) rswcc0_001622.y1 swc Bombyx mori cDNA, mRNA seque...    44   8.7    1
(CK087761) A020P20.3pR Hybrid aspen plasmid library Populus ...    44   8.7    1
(BY940313) Bombyx mori cDNA, clone:E_FL_e100_27B01_F_0, 5' e...    44   8.7    1
(BM606270) 17000659103479 A.Gam.ad.cDNA.blood1 Anopheles gam...    44   8.7    1
(FG564955) BN18DYSC_UP_142_D08_3APR2008_058 BN18DYSC Brassic...    44   8.7    1
(FG286796) 1108770726415 New World Screwworm Egg 9261 ESTs C...    44   8.7    1
(EV021741) BNSCS2CT_UP_081_F12_19APR2007_086 Brassica napus ...    44   8.7    1
(ES982001) 40JKME7D_UP_055_F08_17JUN2006_054 Brassica napus ...    44   8.7    1
(ES922692) 24RDBNH_UP_181_C07_14DEC2006_059 Brassica napus 2...    44   8.7    1
(AA226644) nc21d06.s1 NCI_CGAP_Pr1 Homo sapiens cDNA clone I...    44   8.7    1
(CP001161) Buchnera aphidicola str. 5A (Acyrthosiphon pisum)...    44   8.7    1
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu...    44   8.7    1
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    44   8.7    1

>(AU266476) Dictyostelium discoideum vegetative cDNA clone:VSG434,
           3' end single read.
          Length = 626

 Score = 1067 bits (538), Expect(2) = 0.0
 Identities = 552/558 (98%)
 Strand = Plus / Plus


Query: 193 gaaatgaaaagattttttggtgtttcaaacaacccaaccagccccaactttagatgaggc 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21  gaaatgaaaagattttttggtgtttcaaacaacccaaccagccccaactttagatgaggc 80


Query: 253 aacaaaaagaattggtggaaggatgggacaaatggatgaaaaaataaatggattaaatca 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  aacaaaaagaattggtggaaggatgggacaaatggatgaaaaaataaatggattaaatca 140


Query: 313 agaattattagcatatgataaacaaataaaagcaactagaccaggtccagcacagaatgc 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 agaattattagcatatgataaacaaataaaagcaactagaccaggtccagcacagaatgc 200


Query: 373 aattaaacaaaaagcaattagagtattacaacaaaagaaaatgtatgaaagacaaagaga 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattaaacaaaaagcaattagagtattacaacaaaagaaaatgtatgaaagacaaagaga 260


Query: 433 ccaaatggcaagtacatcatttaatatggagcaaaccaagtttgccacagagtcaatgag 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaaatggcaagtacatcatttaatatggagcaaaccaagtttgccacagagtcaatgag 320


Query: 493 agatacaattacaacagtttcagcaatgaaacagggtgccaaagacatgaaaacacaatt 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatacaattacaacagtttcagcaatgaaacagggtgccaaagacatgaaaacacaatt 380


Query: 553 aaaacatataaaaattgaagatgtagacgatatgcaaagaatgaaatgcaagatttatta 612
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aaaacatataaaaattgaagatgtagacgatatgcaaagaatganatgcaagatttatta 440


Query: 613 gattataacggatgaaattcaagaatcattaggtagagcttatcaaactccagatacttt 672
           |||||||||||||||||||||||  ||||||||||||||||||| |||||||||  ||||
Sbjct: 441 gattataacggatgaaattcaagnntcattaggtagagcttatcgaactccagangcttt 500


Query: 673 agatgaatcagagttggaggctgaattaatgtcaatgggtgaagaattagaattggagag 732
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatgaatcagagttggaggctgaattaatgtcaatgggtgaagaattagaattggagag 560


Query: 733 cctcaatgccttcttatt 750
           ||||||||||||||||||
Sbjct: 561 cctcaatgccttcttatt 578

 Score = 87.7 bits (44), Expect(2) = 0.0
 Identities = 48/50 (96%)
 Strand = Plus / Plus


Query: 750 ttaatgacaccatcagttccaactactgatccacatcaatcaagtgttga 799
           |||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 577 ttaatgacaccatcagttccaactnctnatccacatcaatcaagtgttga 626

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,031,669,975
Number of extensions: 64943459
Number of successful extensions: 5346387
Number of sequences better than 10.0: 233
Length of query: 848
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 824
Effective length of database: 99,340,224,878
Effective search space: 81856345299472
Effective search space used: 81856345299472
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.30
Homology vs Protein 
Query= Contig-U04605-1 (Contig-U04605-1Q) /CSM_Contig/Contig-U04605-1Q.Seq.d
         (848 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54JK4) RecName: Full=Charged multivesicular body protein 5; Al...   260   1e-85
EF677338_1(EF677338|pid:none) Picea sitchensis clone WS02765_O15...   140   1e-32
(Q4QQV8) RecName: Full=Charged multivesicular body protein 5; Al...   137   5e-31
AC073405_19(AC073405|pid:none) Oryza sativa (japonica cultivar-g...   137   5e-31
BT052216_1(BT052216|pid:none) Medicago truncatula clone MTYF9_FA...   137   6e-31
EU441354_1(EU441354|pid:none) Xenopus borealis clone Chmp5.a chr...   135   1e-30
AK108287_1(AK108287|pid:none) Oryza sativa Japonica Group cDNA c...   135   1e-30
BC103182_1(BC103182|pid:none) Bos taurus chromatin modifying pro...   135   2e-30
BT082925_1(BT082925|pid:none) Anoplopoma fimbria clone afim-evh-...   135   2e-30
AK295744_1(AK295744|pid:none) Homo sapiens cDNA FLJ50171 complet...   135   2e-30
(Q5RBR3) RecName: Full=Charged multivesicular body protein 5; Al...   135   2e-30
(Q6DD52) RecName: Full=Charged multivesicular body protein 5; Al...   134   5e-30
BC016698_1(BC016698|pid:none) Homo sapiens chromatin modifying p...   133   7e-30
DQ215994_1(DQ215994|pid:none) Taeniopygia guttata clone 0065P000...   133   9e-30
DQ215988_1(DQ215988|pid:none) Taeniopygia guttata clone 0058P004...   133   9e-30
(Q9VVI9) RecName: Full=Charged multivesicular body protein 5;  &...   132   1e-29
AB008271_17(AB008271|pid:none) Arabidopsis thaliana genomic DNA,...   132   2e-29
BT079989_1(BT079989|pid:none) Esox lucius clone eluc-evq-537-126...   131   3e-29
AK341009_1(AK341009|pid:none) Acyrthosiphon pisum ACYPI001352 mR...   126   1e-28
BT073142_1(BT073142|pid:none) Oncorhynchus mykiss clone omyk-evn...   127   4e-28
BT057148_1(BT057148|pid:none) Salmo salar clone ssal-eve-558-181...   127   4e-28
BT056720_1(BT056720|pid:none) Salmo salar clone ssal-eve-507-009...   127   4e-28
DQ215989_1(DQ215989|pid:none) Taeniopygia guttata clone 0058P002...   127   6e-28
BC086333_1(BC086333|pid:none) Rattus norvegicus chromatin modify...   127   6e-28
EU678319_1(EU678319|pid:none) Crassostrea gigas Snf7 mRNA, compl...   126   8e-28
CR382128_339(CR382128|pid:none) Yarrowia lipolytica strain CLIB1...   126   1e-27
BT073651_1(BT073651|pid:none) Oncorhynchus mykiss clone omyk-evn...   126   1e-27
AX885571_1(AX885571|pid:none) Sequence 1434 from Patent EP1033401.    124   3e-27
AY223022_1(AY223022|pid:none) Schistosoma japonicum clone ZZD112...   122   2e-26
AM494971_58(AM494971|pid:none) Leishmania braziliensis chromosom...   121   3e-26
AP007155_970(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...   118   2e-25
AF132968_1(AF132968|pid:none) Homo sapiens CGI-34 protein mRNA, ...   117   6e-25
AM270079_9(AM270079|pid:none) Aspergillus niger contig An04c0180...   116   8e-25
AM502253_66(AM502253|pid:none) Leishmania infantum chromosome 35.     114   3e-24
FM992693_161(FM992693|pid:none) Candida dubliniensis CD36 chromo...   114   4e-24
BC041499_1(BC041499|pid:none) Xenopus laevis hypothetical protei...   113   7e-24
CR954204_271(CR954204|pid:none) Ostreococcus tauri strain OTTH05...   112   1e-23
CP000081_57(CP000081|pid:none) Leishmania major chromosome 35, c...   111   3e-23
FN392321_161(FN392321|pid:none) Pichia pastoris GS115 chromosome...   111   3e-23
CU633865_273(CU633865|pid:none) Podospora anserina genomic DNA c...   110   8e-23
CP000584_248(CP000584|pid:none) Ostreococcus lucimarinus CCE9901...   109   1e-22
CP000499_154(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...   108   3e-22
AE017346_266(AE017346|pid:none) Cryptococcus neoformans var. neo...   107   7e-22
(O74422) RecName: Full=Uncharacterized protein C162.06c;  &AL023...   106   9e-22
BT057399_1(BT057399|pid:none) Salmo salar clone ssal-evf-514-044...    96   1e-18
CR382123_154(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    86   2e-15
AE016817_516(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...    80   7e-14
CU928167_406(CU928167|pid:none) Kluyveromyces thermotolerans str...    80   1e-13
(Q03390) RecName: Full=Vacuolar protein-sorting-associated prote...    69   3e-10
AY558173_1(AY558173|pid:none) Saccharomyces cerevisiae clone FLH...    69   3e-10
AF229832_1(AF229832|pid:none) Homo sapiens apoptosis-related pro...    67   6e-10
AB332236_1(AB332236|pid:none) Cyanidioschyzon merolae gene for h...    62   3e-08
CP000596_225(CP000596|pid:none) Ostreococcus lucimarinus CCE9901...    52   2e-05
CU928179_849(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    51   6e-05
(Q6CJL0) RecName: Full=Vacuolar-sorting protein SNF7; AltName: F...    50   7e-05
BT033457_1(BT033457|pid:none) Zea mays full-length cDNA clone ZM...    49   2e-04
(Q6FW96) RecName: Full=Vacuolar-sorting protein SNF7; AltName: F...    49   3e-04
CP001326_634(CP001326|pid:none) Micromonas sp. RCC299 chromosome...    49   3e-04
BT038648_1(BT038648|pid:none) Zea mays full-length cDNA clone ZM...    48   4e-04
AK065728_1(AK065728|pid:none) Oryza sativa Japonica Group cDNA c...    48   4e-04
BT051222_1(BT051222|pid:none) Medicago truncatula clone MTYF1_F2...    46   0.001
(Q5KL29) RecName: Full=Vacuolar-sorting protein SNF7; AltName: F...    45   0.002
AY558202_1(AY558202|pid:none) Saccharomyces cerevisiae clone FLH...    45   0.002
(Q6IQ73) RecName: Full=Charged multivesicular body protein 4c; A...    44   0.005
CT005272_399(CT005272|pid:none) Leishmania major strain Friedlin...    44   0.009
(Q9P7F7) RecName: Full=Vacuolar-sorting protein snf7; AltName: F...    43   0.012
AM920428_259(AM920428|pid:none) Penicillium chrysogenum Wisconsi...    43   0.015
AM494972_408(AM494972|pid:none) Leishmania braziliensis chromoso...    40   0.098
CP000500_174(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    40   0.098
CP001103_2928(CP001103|pid:none) Alteromonas macleodii 'Deep eco...    40   0.13
CP000240_2284(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1...    39   0.22
CP001503_1672(CP001503|pid:none) Burkholderia glumae BGR1 chromo...    38   0.37
AP010904_1348(AP010904|pid:none) Desulfovibrio magneticus RS-1 D...    38   0.37
(Q86H98) RecName: Full=Charged multivesicular body protein 4; Al...    37   1.1
CP000979_96(CP000979|pid:none) Borrelia duttonii Ly plasmid pl16...    36   1.4
AE014075_343(AE014075|pid:none) Escherichia coli CFT073, complet...    36   1.4
CP000300_1382(CP000300|pid:none) Methanococcoides burtonii DSM 6...    35   3.2
(Q4G3H4) RecName: Full=Inhibitor of nuclear factor kappa-B kinas...    35   4.1
BC051614_1(BC051614|pid:none) Danio rerio conserved helix-loop-h...    35   4.1
AB331963_1(AB331963|pid:none) Aspergillus oryzae Aosnf7 gene for...    35   4.1
CR762430_3(CR762430|pid:none) Zebrafish DNA sequence from clone ...    35   4.1
(Q5TJ57) RecName: Full=Formin-E; AltName: Full=Diaphanous-relate...    35   4.1
CP000423_1420(CP000423|pid:none) Lactobacillus casei ATCC 334, c...    34   5.4
CP000413_755(CP000413|pid:none) Lactobacillus gasseri ATCC 33323...    34   5.4
CU928176_537(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    34   5.4
EF676903_1(EF676903|pid:none) Picea sitchensis clone WS02757_J17...    34   5.4
AM494969_76(AM494969|pid:none) Leishmania braziliensis chromosom...    34   5.4
CP000702_1140(CP000702|pid:none) Thermotoga petrophila RKU-1, co...    34   5.4
EU931189_1(EU931189|pid:none) Drosophila affinis CG15465-like pr...    34   5.4
AP009493_4020(AP009493|pid:none) Streptomyces griseus subsp. gri...    34   7.0
AE017332_439(AE017332|pid:none) Mycoplasma hyopneumoniae 232, co...    34   7.0
AE001439_1183(AE001439|pid:none) Helicobacter pylori J99, comple...    34   7.0
CR954246_2826(CR954246|pid:none) Pseudoalteromonas haloplanktis ...    34   7.0
CR940347_687(CR940347|pid:none) Theileria annulata strain Ankara...    33   9.2
CR380958_534(CR380958|pid:none) Candida glabrata strain CBS138 c...    33   9.2
Z93382_3(Z93382|pid:none) Caenorhabditis elegans Cosmid F45G2, c...    33   9.2
T22235(T22235)hypothetical protein F45G2.3 - Caenorhabditis eleg...    33   9.2
S22355(S22355;S18870) dnaK-type molecular chaperone hsp70 - Clos...    33   9.2

>(Q54JK4) RecName: Full=Charged multivesicular body protein 5;
           AltName: Full=Vacuolar protein-sorting-associated
           protein 60;
          Length = 215

 Score =  260 bits (665), Expect(2) = 1e-85
 Identities = 137/155 (88%), Positives = 139/155 (89%)
 Frame = +2

Query: 206 FLVFQTTQPAPTLDEATKRIGGRMGQMDEKINGLNQELLAYDKQIKATRPGPAQNAIKQK 385
           F      QPAPTLDEATKRIGGRMGQMDEKINGLNQELLAYDKQIKATRPGPAQNAIKQK
Sbjct: 4   FFGVSNNQPAPTLDEATKRIGGRMGQMDEKINGLNQELLAYDKQIKATRPGPAQNAIKQK 63

Query: 386 AIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRDTITTVSAMKQGAKDMKTQLKHIK 565
           AIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRDTITTVSAMKQGAKDMKTQLKHIK
Sbjct: 64  AIRVLQQKKMYERQRDQMASTSFNMEQTKFATESMRDTITTVSAMKQGAKDMKTQLKHIK 123

Query: 566 IEDVDDMQRMKCKIY*IITDEIQESLGRAYQTPDT 670
           IEDVDDMQ     +     +EIQESLGRAYQTPDT
Sbjct: 124 IEDVDDMQDEMQDLL-DYNNEIQESLGRAYQTPDT 157

 Score = 80.1 bits (196), Expect(2) = 1e-85
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = +3

Query: 732 ASMPSYLMTPSVPTTDPHQSSVDEYGLPIGQEASQQVV 845
           ASMPSYLMTPSVPTTDPHQSSVDEYGLPIGQEASQQVV
Sbjct: 178 ASMPSYLMTPSVPTTDPHQSSVDEYGLPIGQEASQQVV 215

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,053,056,188
Number of extensions: 17723853
Number of successful extensions: 52452
Number of sequences better than 10.0: 98
Number of HSP's gapped: 52363
Number of HSP's successfully gapped: 101
Length of query: 282
Length of database: 1,061,185,681
Length adjustment: 127
Effective length of query: 155
Effective length of database: 646,092,785
Effective search space: 100144381675
Effective search space used: 100144381675
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.83  gvh: 0.43  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for Contig-U04605-1 is cyt
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0