| Contig-U04670-1 |
| Contig ID |
Contig-U04670-1 |
| Contig update |
2001. 8.29 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
461 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
2424962 |
| End point |
2424501 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U04670 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 6.28 |
| Homology vs DNA |
Query= Contig-U04670-1 (Contig-U04670-1Q) /CSM_Contig/Contig-U04670-1Q.Seq.d
(461 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU071682) Dictyostelium discoideum slug cDNA, clone SSC257. 180 3e-49 2
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 38 0.22 6
(CU407166) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.23 5
(AC189628) Brassica rapa subsp. pekinensis clone KBrS003D10,... 40 0.25 3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 0.30 8
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69... 36 0.47 6
(AC220678) Bos taurus clone CH240-349I5, WORKING DRAFT SEQUE... 36 0.62 2
(CR293511) Zebrafish DNA sequence from clone DKEY-93H22 in l... 36 0.77 3
(CU861481) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.78 4
(AC189549) Brassica rapa subsp. pekinensis clone KBrH005C21,... 40 0.99 5
(AM429993) Vitis vinifera contig VV78X252170.43, whole genom... 34 1.1 3
(AL627394) Mouse DNA sequence from clone RP23-174I9 on chrom... 46 1.2 1
(AM445891) Vitis vinifera contig VV78X245458.2, whole genome... 46 1.2 1
(U41264) Caenorhabditis elegans cosmid F10E7, complete seque... 46 1.2 1
(CU972389) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.2 1
(CU928357) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 1.2 1
(AC172957) Bos taurus clone CH240-279L9, WORKING DRAFT SEQUE... 46 1.2 1
(BH971079) odh54a07.g1 B.oleracea002 Brassica oleracea genom... 46 1.2 1
(BH690638) BOMCG88TR BO_2_3_KB Brassica oleracea genomic clo... 46 1.2 1
(AL954314) Zebrafish DNA sequence from clone XX-162M2 in lin... 34 1.2 4
(BZ465838) BONBD48TR BO_1.6_2_KB_tot Brassica oleracea genom... 34 1.2 2
(CT998539) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 1.2 2
(AP003071) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 44 1.3 2
(AZ615682) 1M0445G02F Mouse 10kb plasmid UUGC1M library Mus ... 36 1.4 2
(EI074463) hgx0013ah03.b1 hgx Oryza minuta genomic clone hgx... 34 1.4 3
(EJ041079) 1095454093541 Global-Ocean-Sampling_GS-26-01-01-1... 32 1.5 3
(AC189143) Cavia porcellus clone CH234-354G19, WORKING DRAFT... 38 1.7 5
(AC196754) Citrus sinensis clone CSRBBa-032P20, WORKING DRAF... 38 1.9 3
(AB015468) Arabidopsis thaliana genomic DNA, chromosome 5, T... 44 1.9 2
(AP002782) Homo sapiens genomic DNA, chromosome 11q clone:RP... 40 2.0 3
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 36 2.1 6
(CU466949) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.1 8
(AC099645) Mus musculus chromosome 15, clone RP23-426G4, com... 42 2.3 5
(AJ928742) Theileria annulata EST, clone tam022c06_q1k. 38 2.7 2
(AL031677) Human DNA sequence from clone RP4-790B6 on chromo... 38 2.7 5
(BX571981) Zebrafish DNA sequence from clone DKEY-31J3 in li... 36 2.8 7
(AC216292) Solanum lycopersicum chromosome 12 clone LE_HBa-1... 42 2.8 2
(BX957357) Zebrafish DNA sequence from clone DKEY-98L21 in l... 36 3.0 5
(DD334290) A method of testing a sensitivity of tumor cells ... 38 3.0 3
(AL355815) Human DNA sequence from clone RP3-453H5 on chromo... 38 3.0 3
(AC019124) Homo sapiens chromosome 11 clone RP11-554A11, WOR... 44 3.0 3
(AZ669724) ENTGJ38TF Entamoeba histolytica Sheared DNA Entam... 34 3.1 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 3.1 8
(AC212922) Populus trichocarpa clone POP006-E02, complete se... 38 3.2 2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 32 3.3 10
(CB386304) OSTF047A1_1 AD-wrmcDNA Caenorhabditis elegans cDN... 40 3.4 2
(CT573304) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 4.1 5
(AF466305) Dictyostelium discoideum ABC transporter AbcB2 (a... 36 4.4 2
(AC102801) Homo sapiens chromosome 8, clone RP11-960P16, com... 38 4.6 3
(CT027646) Zebrafish DNA sequence from clone CH211-38M6 in l... 44 4.6 1
(CT025920) Zebrafish DNA sequence from clone CH73-64P10 in l... 44 4.6 1
(BX548001) Zebrafish DNA sequence from clone DKEY-231J9 in l... 44 4.6 1
(BX470100) Zebrafish DNA sequence from clone DKEY-239K7 in l... 44 4.6 1
(BX247877) Zebrafish DNA sequence from clone DKEY-16J24 in l... 44 4.6 1
(BV094176) RPAMMSEQ0006114 Roche Palo Alto Mus musculus STS ... 44 4.6 1
(BV094169) RPAMMSEQ0006107 Roche Palo Alto Mus musculus STS ... 44 4.6 1
(AL627445) Mouse DNA sequence from clone RP23-81D2 on chromo... 44 4.6 1
(AC165260) Mus musculus BAC clone RP23-123E17 from chromosom... 44 4.6 1
(AC162374) Mus musculus BAC clone RP24-370I14 from chromosom... 44 4.6 1
(AC161252) Mus musculus BAC clone RP24-167E3 from chromosome... 44 4.6 1
(AC122049) Mus musculus BAC clone RP24-456N19 from 16, compl... 44 4.6 1
(AM474537) Vitis vinifera, whole genome shotgun sequence, co... 44 4.6 1
(AC144474) Medicago truncatula clone mth2-15l5, complete seq... 44 4.6 1
(AC124958) Medicago truncatula clone mth2-18i11, complete se... 44 4.6 1
(EA040319) Sequence 27 from patent US 7151161. 44 4.6 1
(AX685238) Sequence 45 from Patent WO02066652. 44 4.6 1
(AC112173) Homo sapiens chromosome 5 clone CTD-2275D10, comp... 44 4.6 1
(AC137253) Rattus norvegicus clone CH230-unknown, WORKING DR... 44 4.6 1
(AC128477) Rattus norvegicus clone CH230-128A7, *** SEQUENCI... 44 4.6 1
(AC127183) Rattus norvegicus clone CH230-96B18, *** SEQUENCI... 44 4.6 1
(AC118787) Rattus norvegicus clone CH230-433F6, *** SEQUENCI... 44 4.6 1
(AC097795) Rattus norvegicus clone CH230-60J21, WORKING DRAF... 44 4.6 1
(AC095675) Rattus norvegicus clone CH230-8J15, WORKING DRAFT... 44 4.6 1
(AC032012) Mus musculus chromosome 11 clone RP23-237M14 map ... 44 4.6 1
(CU464053) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 4.6 1
(CU019556) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 4.6 1
(CR381583) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 4.6 1
(BX470165) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 4.6 1
(AP003779) Homo sapiens genomic DNA, chromosome 11q clone:RP... 44 4.6 1
(AC224822) Bos taurus clone CH240-475I15, WORKING DRAFT SEQU... 44 4.6 1
(AC217328) Oryza punctata clone OP__Ba0003P01, *** SEQUENCIN... 44 4.6 1
(AC191919) Spermophilus tridecemlineatus clone VMRC20-416E5,... 44 4.6 1
(AC191385) Pan troglodytes chromosome 11 clone CH251-510M10,... 44 4.6 1
(AK148620) Mus musculus 2 days neonate sympathetic ganglion ... 44 4.6 1
(BH518285) BOGNA05TF BOGN Brassica oleracea genomic clone BO... 44 4.6 1
(BH502606) BOGLD61TR BOGL Brassica oleracea genomic clone BO... 44 4.6 1
(BH489642) BOGBU78TR BOGB Brassica oleracea genomic clone BO... 44 4.6 1
(BH480226) BOHNX01TR BOHN Brassica oleracea genomic clone BO... 44 4.6 1
(BH466536) BOHGW20TR BOHG Brassica oleracea genomic clone BO... 44 4.6 1
(BH434921) BOHKK92TR BOHK Brassica oleracea genomic clone BO... 44 4.6 1
(BH424764) BOHLN91TF BOHL Brassica oleracea genomic clone BO... 44 4.6 1
(AQ977276) RPCI-23-334F20.TV RPCI-23 Mus musculus genomic cl... 44 4.6 1
(ER483862) 1093015284764 Global-Ocean-Sampling_GS-35-01-01-1... 44 4.6 1
(ER355136) 1092351045470 Global-Ocean-Sampling_GS-34-01-01-1... 44 4.6 1
(ER295704) 1092343645693 Global-Ocean-Sampling_GS-34-01-01-1... 44 4.6 1
(EI201690) MUGQ_CH252P193C20Sp6_CN293_078 CHORI-252 Vervet M... 44 4.6 1
(DX064512) KBrB072A07F KBrB, Brassica rapa BamHI BAC library... 44 4.6 1
(CZ887927) ubnb001e001d03f0 Brassica napus methylation unfil... 44 4.6 1
(CT085636) Sus scrofa genomic clone CH242-132C9, genomic sur... 44 4.6 1
(CC053617) SALK_045798.40.50.x Arabidopsis thaliana TDNA ins... 44 4.6 1
(BZ466293) BONAM41TR BO_1.6_2_KB_tot Brassica oleracea genom... 44 4.6 1
(BZ463370) BONFY95TF BO_1.6_2_KB_tot Brassica oleracea genom... 44 4.6 1
(BZ435531) BONQK33TR BO_1.6_2_KB_tot Brassica oleracea genom... 44 4.6 1
(BZ009088) oeh51b03.b1 B.oleracea002 Brassica oleracea genom... 44 4.6 1
(AG049184) Pan troglodytes DNA, clone: PTB-029D18.R. 44 4.6 1
(DW267926) UI-S-GN1-aby-i-14-0-UI.s1 UI-S-GN1 Euprymna scolo... 44 4.6 1
(DW261274) UI-S-GG1-abe-m-11-0-UI.s1 UI-S-GG1 Euprymna scolo... 44 4.6 1
(CK182276) EST771596 BEA Rhipicephalus microplus cDNA clone ... 44 4.6 1
(CK182275) EST771595 BEA Rhipicephalus microplus cDNA clone ... 44 4.6 1
(FG293051) 1108770656180 New World Screwworm Larvae 9387 EST... 44 4.6 1
(FG288647) 1108793273104 New World Screwworm Egg 9261 ESTs C... 44 4.6 1
(CR925678) Ehrlichia ruminantium str. Welgevonden, complete ... 44 4.6 1
(CR925677) Ehrlichia ruminantium str. Gardel, complete genome. 44 4.6 1
(CR767821) Ehrlichia ruminantium strain Welgevonden, complet... 44 4.6 1
(AF308668) Cowdria ruminantium clone 14hw hypothetical lipop... 44 4.6 1
(AC121768) Mus musculus BAC clone RP23-339H16 from 15, compl... 38 5.0 2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 5.1 7
(CU656044) Zebrafish DNA sequence from clone CH1073-96K4. 36 5.1 4
(BX321894) Zebrafish DNA sequence from clone DKEYP-56B7 in l... 36 5.6 6
(AC104458) Homo sapiens chromosome 1 clone RP5-1102E8, compl... 42 5.6 3
(EK200552) 1095460055172 Global-Ocean-Sampling_GS-31-01-01-1... 34 5.8 2
(ET101201) QM0AAB18CF09FM1 CCER1 Citrus clementina genomic c... 36 5.8 2
(DJ386646) Diagnosis of Diseases Associated with Metastasis. 34 6.0 3
(AX346109) Sequence 1180 from Patent WO0200928. 34 6.0 3
(AX281442) Sequence 106 from Patent WO0177376. 34 6.0 3
(FP015838) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 6.6 4
(ER582266) 1093015847663 Global-Ocean-Sampling_GS-36-01-01-2... 38 6.6 2
(AC067914) Homo sapiens chromosome 22 clone RP11-459D2 map 2... 36 6.6 3
(EK581249) 1095521701417 Global-Ocean-Sampling_GS-32-01-01-1... 36 6.8 2
(AC114261) Dictyostelium discoideum chromosome 2 map 126059-... 34 6.8 5
(EK563672) 1095521029590 Global-Ocean-Sampling_GS-32-01-01-1... 36 7.0 2
(DV968271) GC06266 Gracilaria changii cDNA library Gracilari... 40 7.1 2
(AC084336) Homo sapiens chromosome 8, clone RP11-625F15, com... 38 7.2 3
(AC181601) Bos taurus clone CH240-420H3, WORKING DRAFT SEQUE... 36 7.6 3
(AC094077) Rattus norvegicus clone CH230-129B9, *** SEQUENCI... 30 8.1 2
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 32 8.2 2
(AC152713) Bos taurus clone CH240-7D23, WORKING DRAFT SEQUEN... 40 8.2 5
(AL807377) Zebrafish DNA sequence from clone CH211-229G3. 34 8.2 3
(AC141167) Rattus norvegicus clone CH230-233C10, WORKING DRA... 30 8.3 2
(AC016861) Homo sapiens clone RP11-13N14, LOW-PASS SEQUENCE ... 40 8.5 2
(BX323994) Zebrafish DNA sequence from clone CH211-273A5 in ... 36 8.6 5
(AC215900) Populus trichocarpa clone POP064-E05, complete se... 32 8.7 2
(CT573389) Zebrafish DNA sequence from clone CH73-95L15 in l... 32 8.8 2
(AC138157) Carollia perspicillata clone 45N16, complete sequ... 42 8.9 4
(AC122041) Mus musculus BAC clone RP24-443H19 from chromosom... 42 9.3 3
(AC158172) Medicago truncatula chromosome 6 clone mth2-143b6... 36 9.4 4
(BX537109) Zebrafish DNA sequence from clone DKEY-86P22 in l... 32 9.7 5
(AC101713) Mus musculus chromosome 15, clone RP23-282L9, com... 36 9.8 3
(AG390822) Mus musculus molossinus DNA, clone:MSMg01-207K16.... 36 9.9 2
(AM449196) Vitis vinifera contig VV78X056493.9, whole genome... 30 9.9 2
>(AU071682) Dictyostelium discoideum slug cDNA, clone SSC257.
Length = 240
Score = 180 bits (91), Expect(2) = 3e-49
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 150 gaacacaccccaactctcaactacataatgaataaagagatagttgcacaattattacaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gaacacaccccaactctcaactacataatgaataaagagatagttgcacaattattacaa 209
Query: 210 gcaacattatcaagtgatcatactagagtac 240
|||||||||||||||||||||||||||||||
Sbjct: 210 gcaacattatcaagtgatcatactagagtac 240
Score = 50.1 bits (25), Expect(2) = 3e-49
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ctaattatttatatgtttttagatt 25
|||||||||||||||||||||||||
Sbjct: 1 ctaattatttatatgtttttagatt 25
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 552,339,134
Number of extensions: 38019462
Number of successful extensions: 3634127
Number of sequences better than 10.0: 151
Length of query: 461
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 438
Effective length of database: 99,442,330,388
Effective search space: 43555740709944
Effective search space used: 43555740709944
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
|
| protein update |
2009. 7.30 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |