Homology vs DNA |
Query= Contig-U04940-1 (Contig-U04940-1Q) /CSM_Contig/Contig-U04940-1Q.Seq.d (776 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU037636) Dictyostelium discoideum slug cDNA, clone SSE113. 692 0.0 3 (AU072288) Dictyostelium discoideum slug cDNA, clone SSE113. 404 e-108 1 (AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 38 0.012 12 (AL844506) Plasmodium falciparum chromosome 7. 40 0.023 15 (C93361) Dictyostelium discoideum slug cDNA, clone SSM671. 52 0.032 1 (C90802) Dictyostelium discoideum slug cDNA, clone SSJ166. 52 0.032 1 (BJ411840) Dictyostelium discoideum cDNA clone:ddv6c03, 5' e... 52 0.032 1 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 32 0.081 12 (GE806545) EST_scau_evk_971547 scauevk mixed_tissue Sebastes... 40 0.092 2 (EW978238) EST_sras_evg_777463 srasevg mixed_tissue Sebastes... 40 0.093 2 (EW984986) EST_sras_evg_777879 srasevg mixed_tissue Sebastes... 40 0.095 2 (EW985351) EST_sras_evg_778065 srasevg mixed_tissue Sebastes... 40 0.096 2 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 40 0.16 11 (CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 34 0.18 16 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 0.20 15 (AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com... 32 0.20 15 (CP000727) Clostridium botulinum A str. Hall, complete genome. 36 0.20 17 (AF030694) Plasmodium falciparum strain Dd2 heat shock prote... 40 0.22 7 (AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 32 0.26 11 (CP000726) Clostridium botulinum A str. ATCC 19397, complete... 36 0.27 17 (AM412317) Clostridium botulinum A str. ATCC 3502 complete g... 36 0.28 17 (DQ198583) Phengodes sp. UPOL 000M29 cytochrome oxidase subu... 48 0.51 1 (BX664703) Zebrafish DNA sequence from clone DKEYP-74A8 in l... 38 0.58 7 (AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 0.65 13 (AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 32 0.67 6 (CP000395) Borrelia afzelii PKo, complete genome. 36 0.95 14 (U89350) Dictyostelium discoideum golvesin (gol) gene, compl... 42 1.0 2 (AC133822) Rattus norvegicus clone CH230-235C5, *** SEQUENCI... 32 1.0 2 (AC110433) Rattus norvegicus clone CH230-230O15, WORKING DRA... 32 1.0 2 (AC083817) Mus musculus 1 BAC RP23-470G12 (Roswell Park Canc... 38 1.2 3 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 38 1.5 17 (AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 32 1.5 10 (AC140024) Medicago truncatula chromosome 8 clone mth2-5f21,... 44 1.8 4 (AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 34 1.9 7 (AF295546) Malawimonas jakobiformis mitochondrial DNA, compl... 36 2.0 5 (BX005316) Zebrafish DNA sequence from clone CH211-287H3. 46 2.0 1 (AL929392) Zebrafish DNA sequence from clone CH211-79L17 in ... 46 2.0 1 (AC157593) Mus musculus BAC clone RP23-254B18 from chromosom... 46 2.0 1 (AC102083) Mus musculus chromosome 16, clone RP23-269L18, co... 46 2.0 1 (AC166314) Medicago truncatula chromosome 2 BAC clone mth2-1... 46 2.0 1 (AC159835) Bos taurus clone CH240-78B22, WORKING DRAFT SEQUE... 46 2.0 1 (AC110663) Bos taurus clone RP42-343B18, WORKING DRAFT SEQUE... 46 2.0 1 (CU302261) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.0 1 (AC220217) Bos taurus clone CH240-366J10, WORKING DRAFT SEQU... 46 2.0 1 (EJ696514) 1092956020775 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.0 1 (EJ652581) 1092954006084 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.0 1 (DX601158) ZMMBBc0261C14.fq ZMMBB_VAL Zea mays genomic clone... 46 2.0 1 (DU877261) 220226 Tomato HindIII BAC Library Solanum lycoper... 46 2.0 1 (DH380620) Oryzias latipes Fosmid clone:GOLWFno781_a14, forw... 46 2.0 1 (CT707260) Danio rerio EST, clone ZF_mu_200a18 3'. 46 2.0 1 (CT707259) Danio rerio EST, clone ZF_mu_200a18 5'. 46 2.0 1 (BJ731143) Oryzias latipes cDNA clone:MF015DA013o12, 5' end. 46 2.0 1 (BB202751) Mus musculus 0 day neonate thymus cDNA, RIKEN ful... 42 2.0 2 (AC167388) Bos taurus clone CH240-137P12, WORKING DRAFT SEQU... 36 2.0 5 (AL844501) Plasmodium falciparum strain 3D7, chromosome 1. 34 2.1 13 (AC073551) Homo sapiens BAC clone RP11-498C14 from 2, comple... 38 2.2 4 (AC138580) Medicago truncatula chromosome 6 clone mth2-14e15... 36 2.4 7 (DY697067) EST_ssal_rgb2_52806 ssalrgb2 mixed_tissue Salmo s... 42 2.5 2 (AC159437) Trypanosoma brucei chromosome 7 clone RPCI93-29K4... 38 2.7 3 (AC099863) Mus musculus chromosome 3, clone RP23-6F2, comple... 38 2.9 6 (AC069399) Homo sapiens chromosome 3 clone RP11-348L20 map 3... 44 2.9 4 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 32 3.0 10 (CU463345) Mouse DNA sequence from clone RP24-346O11 on chro... 38 3.3 3 (AC202298) Medicago truncatula clone mth2-82e22, complete se... 36 3.4 5 (AF222718) Chrysodidymus synuroideus mitochondrion, complete... 32 3.4 6 (AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 30 3.5 13 (AQ046873) RPCI11-33M20.TK RPCI-11 Homo sapiens genomic clon... 34 3.6 3 (AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 3.6 9 (AC219450) Bos taurus clone CH240-340P12, WORKING DRAFT SEQU... 38 3.7 3 (AC094963) Rattus norvegicus X BAC CH230-6L20 (Children's Ho... 34 3.8 2 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 40 3.8 8 (CR356240) Zebrafish DNA sequence from clone CH211-226E7 in ... 32 3.8 2 (CU464119) Zebrafish DNA sequence from clone CH73-271G12 in ... 34 3.8 5 (AC137889) Homo sapiens chromosome 8 clone RP11-164D17 map 8... 38 3.8 4 (BX247870) Zebrafish DNA sequence from clone RP71-24B12 in l... 32 3.9 2 (CU041370) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 3.9 3 (CP000361) Arcobacter butzleri RM4018, complete genome. 38 4.0 15 (EI520872) MUGQ_CH252P241P07Sp6_CN460_018 CHORI-252 Vervet M... 34 4.1 2 (AC092801) Homo sapiens chromosome 1 clone RP11-36N20, compl... 36 4.1 6 (AC104303) Homo sapiens chromosome 3 clone RP11-391P4, compl... 36 4.2 5 (AC149788) Pan troglodytes BAC clone CH251-63L13 from chromo... 40 4.3 4 (AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 32 4.4 9 (AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 34 4.5 5 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 5.0 9 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 34 5.1 9 (AC175126) Bos taurus clone CH240-459D20, WORKING DRAFT SEQU... 40 5.2 4 (CP001205) Borrelia burgdorferi ZS7, complete genome. 36 5.3 11 (AZ693037) ENTHP79TF Entamoeba histolytica Sheared DNA Entam... 40 5.3 2 (AI168538) oz42b05.s1 Soares_NhHMPu_S1 Homo sapiens cDNA clo... 34 5.6 2 (AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 34 5.6 7 (AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7... 32 5.7 11 (AC149953) Strongylocentrotus purpuratus clone R3-32B17, WOR... 34 5.9 5 (EK576972) 1095521355481 Global-Ocean-Sampling_GS-32-01-01-1... 34 6.4 3 (AC178057) Strongylocentrotus purpuratus clone R3-3056G04, W... 34 6.6 7 (AM471579) Vitis vinifera contig VV78X046697.1, whole genome... 36 6.6 2 (AL589679) Mouse DNA sequence from clone RP23-189A16 on chro... 42 6.7 5 (CR376842) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 6.7 6 (AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 6.8 10 (AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 32 6.9 10 (CT476817) Zebrafish DNA sequence from clone CH211-62C1 in l... 38 6.9 6 (DV742201) ID0AFF6BG11CM1 ID0AFF Acyrthosiphon pisum cDNA cl... 38 7.2 2 (AA259131) zs30c02.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 34 7.3 3 (BH154372) ENTTH52TR Entamoeba histolytica Sheared DNA Entam... 32 7.7 3 (AA830778) oc56a10.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 34 7.8 3 (BX005044) Zebrafish DNA sequence from clone DKEY-7L6 in lin... 44 7.9 1 (BV644092) S217P6990RH5.T0 Noemie Pan troglodytes troglodyte... 44 7.9 1 (AL845488) Mouse DNA sequence from clone RP23-215P8 on chrom... 44 7.9 1 (CU104666) Gorilla DNA sequence from clone CH255-415I16. 44 7.9 1 (CU104654) Gorilla DNA sequence from clone CH255-13G2. 44 7.9 1 (BA000041) Pan troglodytes DNA, major histocompatibility com... 44 7.9 1 (AC200691) MACACA MULATTA BAC clone CH250-157G13 from chromo... 44 7.9 1 (AB054536) Pan troglodytes LTB, TNF alpha, LTA, IKBL, ATP6G,... 44 7.9 1 (AY558680) Phellinus ferrugineovelutinus strain CBS 218.48 s... 44 7.9 1 (AM270350) Aspergillus niger contig An15c0230, complete genome. 44 7.9 1 (DJ008493) Methods and Compositions for Differentiating Tiss... 44 7.9 1 (CS452618) Sequence 18 from Patent WO2006119494. 44 7.9 1 (CS452617) Sequence 17 from Patent WO2006119494. 44 7.9 1 (CS039419) Sequence 229 from Patent WO2005019477. 44 7.9 1 (GC698988) Sequence 14233 from patent US 6812339. 44 7.9 1 (GC696536) Sequence 11780 from patent US 6812339. 44 7.9 1 (AR535919) Sequence 481 from patent US 6737248. 44 7.9 1 (AR354363) Sequence 481 from patent US 6593114. 44 7.9 1 (AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 44 7.9 1 (X92841) H.sapiens MICA gene. 44 7.9 1 (L29411) Homo sapiens MHC class I alpha chain gene, leader e... 44 7.9 1 (D84394) Homo sapiens genomic DNA, 237 kb segment from 6p21.... 44 7.9 1 (CR847852) Human DNA sequence from clone DAMA-345G11 on chro... 44 7.9 1 (BX119958) Human DNA sequence from clone DASS-38L18 on chrom... 44 7.9 1 (BA000025) Homo sapiens genomic DNA, chromosome 6p21.3, HLA ... 44 7.9 1 (AP003486) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 44 7.9 1 (AP000824) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 44 7.9 1 (AL845443) Human DNA sequence from clone DAQB-48K1 on chromo... 44 7.9 1 (AL669854) Human DNA sequence from clone XXbac-25O20 on chro... 44 7.9 1 (AL645933) Human DNA sequence from clone XXbac-181B23 on chr... 44 7.9 1 (AC098677) Homo sapiens BAC clone RP11-416E16 from 4, comple... 44 7.9 1 (AC093001) Homo sapiens 3 BAC RP11-206M11 (Roswell Park Canc... 44 7.9 1 (AC066694) Homo sapiens BAC clone RP11-655A7 from 2, complet... 44 7.9 1 (AC004180) Homo sapiens clone UWGC:M32A from 6p21, complete ... 44 7.9 1 (AC129376) Rattus norvegicus clone CH230-83P17, *** SEQUENCI... 44 7.9 1 (AC126413) Mus musculus clone RP24-340A9, WORKING DRAFT SEQU... 44 7.9 1 (AC126239) Felis catus clone RP86-474H17, WORKING DRAFT SEQU... 44 7.9 1 (AC106403) Rattus norvegicus clone CH230-129B20, *** SEQUENC... 44 7.9 1 (AC091741) Homo sapiens chromosome 4 clone RP11-689E2, *** S... 44 7.9 1 (AC072027) Homo sapiens chromosome 3 clone RP11-268J1, WORKI... 44 7.9 1 (AC069268) Homo sapiens chromosome 3p clone RP11-348I20, WOR... 44 7.9 1 (AC037468) Homo sapiens chromosome 4 clone RP11-198E18 map 4... 44 7.9 1 (AC233206) Monodelphis domestica clone VMRC18-928C19, WORKIN... 44 7.9 1 (AC233017) Monodelphis domestica clone VMRC18-348E13, WORKIN... 44 7.9 1 (AC223985) Bos taurus clone CH240-452I19, WORKING DRAFT SEQU... 44 7.9 1 (AC223844) Bos taurus clone CH240-456D12, WORKING DRAFT SEQU... 44 7.9 1 (AC199665) Nomascus leucogenys leucogenys clone CH271-201N17... 44 7.9 1 (AC181722) Strongylocentrotus purpuratus clone R3-1039G04, W... 44 7.9 1 (AC178363) Strongylocentrotus purpuratus clone R3-3107B10, W... 44 7.9 1 (AC176104) Strongylocentrotus purpuratus clone R3-24F10, WOR... 44 7.9 1 (AC175945) Strongylocentrotus purpuratus clone R3-17C11, WOR... 44 7.9 1 (AC168758) Strongylocentrotus purpuratus clone R3-3004I8, WO... 44 7.9 1 (AC166956) Bos taurus clone CH240-188C18, WORKING DRAFT SEQU... 44 7.9 1 (AC163504) Bos taurus clone CH240-241B2, WORKING DRAFT SEQUE... 44 7.9 1 (AC025119) Homo sapiens chromosome 3 clone RP11-206M11 map 3... 44 7.9 1 (AC022249) Homo sapiens clone RP11-24G14, WORKING DRAFT SEQU... 44 7.9 1 (EK332474) 1095467028959 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.9 1 (EK045426) 1092959547682 Global-Ocean-Sampling_GS-31-01-01-1... 44 7.9 1 (AM660931) Entamoeba moshkovskii FIC GSS, clone mosh104b01.p1k. 44 7.9 1 (AM644205) Entamoeba moshkovskii FIC GSS, clone mosh007f11.q1k. 44 7.9 1 (EI327397) GM_WBc0065F06.r GM_WBc Glycine max genomic clone ... 44 7.9 1 (DX458915) Cpl00569 Papaya Genomic DNA BAC Library Carica pa... 44 7.9 1 (BH985815) oeh96e08.b1 B.oleracea002 Brassica oleracea genom... 44 7.9 1 (EC320062) EMBRYOF088896J3 POSSUM_01-POSSUM-C-EMBRYO-2KB Tri... 44 7.9 1 (DT861718) LB00552.CR_P11 GC_BGC-05 Bos taurus cDNA clone IM... 44 7.9 1 (DN815936) ACAC-aac21c17.g1 Hydra EST UCI 7 Hydra magnipapil... 44 7.9 1 (CB987280) AGENCOURT_13643080 NIH_MGC_184 Homo sapiens cDNA ... 44 7.9 1 (EY475793) METAK22TF JCVI-MT3 Medicago truncatula cDNA 5', m... 44 7.9 1 (CP000736) Staphylococcus aureus subsp. aureus JH1, complete... 44 7.9 1 (CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151... 44 7.9 1 (CP000703) Staphylococcus aureus subsp. aureus JH9, complete... 44 7.9 1 (CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375... 44 7.9 1 (CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co... 44 7.9 1 (CP000046) Staphylococcus aureus subsp. aureus COL, complete... 44 7.9 1 (BA000018) Staphylococcus aureus subsp. aureus N315 DNA, com... 44 7.9 1 (BA000017) Staphylococcus aureus subsp. aureus Mu50 DNA, com... 44 7.9 1 (AP009351) Staphylococcus aureus subsp. aureus str. Newman D... 44 7.9 1 (AP009324) Staphylococcus aureus subsp. aureus Mu3 DNA, comp... 44 7.9 1 (AM398681) Flavobacterium psychrophilum JIP02/86 complete ge... 44 7.9 1 (AM260525) Bartonella tribocorum CIP 105476 complete genome,... 44 7.9 1 (AJ938182) Staphylococcus aureus RF122 complete genome. 44 7.9 1 (CU928762) Zebrafish DNA sequence from clone CH73-203I3 in l... 32 8.0 5 (AC159458) Trypanosoma brucei chromosome 7 clone RPCI93-8P12... 38 8.3 3 (AB365355) Candida boidinii TRM1 gene for Zn(II)2Cys6-type t... 30 8.7 5 (CU302254) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 8.8 5 (AC176307) Strongylocentrotus purpuratus clone R3-3057B1, WO... 40 9.2 7 (AE014298) Drosophila melanogaster chromosome X, complete se... 30 9.3 2 (AC127908) Rattus norvegicus clone CH230-213E7, WORKING DRAF... 36 9.8 4 (AC168488) Strongylocentrotus purpuratus clone R3-3117J19, W... 40 9.9 4
>(AU037636) Dictyostelium discoideum slug cDNA, clone SSE113. Length = 558
Score = 692 bits (349), Expect(3) = 0.0 Identities = 358/358 (100%) Strand = Plus / Plus
Query: 322 aaaatggtatggttagatttttaaagaaaaagatttggacaatgtacagttattgctgtc 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 94 aaaatggtatggttagatttttaaagaaaaagatttggacaatgtacagttattgctgtc 153
Query: 382 aacagttatgtcgtggtaatcattatatgattnggaatgataaagattttcaatacagtt 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 aacagttatgtcgtggtaatcattatatgattnggaatgataaagattttcaatacagtt 213
Query: 442 atagactttggattgccgatgatgaaaataatgaacataagttggaccattccgtatcat 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 atagactttggattgccgatgatgaaaataatgaacataagttggaccattccgtatcat 273
Query: 502 taagattaaatcaaaaatcattttatgctgaccttttaaaaaattctttccctcattctt 561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 taagattaaatcaaaaatcattttatgctgaccttttaaaaaattctttccctcattctt 333
Query: 562 caaaaatgaaatgttatgaactattaatcctttanatcggtgttttaccaatntcaatgg 621 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 334 caaaaatgaaatgttatgaactattaatcctttanatcggtgttttaccaatntcaatgg 393
Query: 622 tttcaaagaatgataaagcattatatcatttattatttgaaatggatgaataataaca 679 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 tttcaaagaatgataaagcattatatcatttattatttgaaatggatgaataataaca 451
Score = 190 bits (96), Expect(3) = 0.0 Identities = 96/96 (100%) Strand = Plus / Plus
Query: 229 tcattatcaaggtaataatgttggtggtatcaatttcgatagtatcaatattaatataga 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 tcattatcaaggtaataatgttggtggtatcaatttcgatagtatcaatattaatataga 61
Query: 289 tccaaataatgaacaatcaatttcagatactcaaaa 324 |||||||||||||||||||||||||||||||||||| Sbjct: 62 tccaaataatgaacaatcaatttcagatactcaaaa 97
Score = 46.1 bits (23), Expect(3) = 0.0 Identities = 23/23 (100%) Strand = Plus / Plus
Query: 754 cttttaataaaattaatctttaa 776 ||||||||||||||||||||||| Sbjct: 526 cttttaataaaattaatctttaa 548
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 994,096,822 Number of extensions: 67811810 Number of successful extensions: 5829216 Number of sequences better than 10.0: 193 Length of query: 776 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 752 Effective length of database: 99,340,224,878 Effective search space: 74703849108256 Effective search space used: 74703849108256 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
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Homology vs Protein |
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