NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05006-1
Contig ID Contig-U05006-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U05006-1 (Contig-U05006-1Q) /CSM_Contig/Contig-U05006-1Q.Seq.d
AAATTCAAAACATAATATATTTATAAAGATTTTACATCCACTTAGTTTTG
TGCTAAGTTTTGTTGTAATGATAACATCAATTATATTATTAATTATATTG
AATCCAGAATTCATTGCAAATCGAGCCCAATTGGAGGGTCATAGTATAGT
GTTTGCTTGGTGTTTAAATATTTTAATTCATTGGATTCCACCGATTATGT
TAGTGTTTGATTTAATCTTACATAAGGAACATATTAGAAAGAGACATCGT
ATATTTTTATCAAGAAGAAATAATTTGAAGACTTGGATCAAGGATGGTGT
TAAAGTATTTTGGTGCGTAGTTTCTCCAATGATTCTAGTGGCTGCTTGGT
TTGGCGCAGGTTTTACAATTCAAGGTGTTTATGGTGTTACAAATTACAAT
TTATCTTATCTTATTCCTTCAATGTGTGCTGTTGATATGATTGTAGCTTT
TTTCTTTATTTGGGTTGTTAGAAAAAAACCAGATTCCTATATAAGATTAA
ATAGTTAAAAATAAAAAATTTAAAAATATCCATAAATAAAAAAAAAAAAA
AAAA
Gap no gap
Contig length 554
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2883330
End point 2883884
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 3
Link to clone list U05006
List of clone(s) 

est1=VSB533Z,1,555
est2=VSB555Z,16,555
est3=SSE469E,29,555
Translated Amino Acid sequence 
NSKHNIFIKILHPLSFVLSFVVMITSIILLIILNPEFIANRAQLEGHSIVFAWCLNILIH
WIPPIMLVFDLILHKEHIRKRHRIFLSRRNNLKTWIKDGVKVFWCVVSPMILVAAWFGAG
FTIQGVYGVTNYNLSYLIPSMCAVDMIVAFFFIWVVRKKPDSYIRLNS*k*ki*kyp*ik
kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kfkt*yiykdftst*fcakfccndninyiinyiesrihcksspiggs*ysvclvfkyfns
ldstdyvsv*fnlt*gty*ketsyifikkk*fedldqgwc*silvrsfsndssgclvwrr
fynsrclwcyklqfilsysfnvcc*ydcsfflylgc*kktrflykik*lkiknlkisink
kkkk


Frame B:
NSKHNIFIKILHPLSFVLSFVVMITSIILLIILNPEFIANRAQLEGHSIVFAWCLNILIH
WIPPIMLVFDLILHKEHIRKRHRIFLSRRNNLKTWIKDGVKVFWCVVSPMILVAAWFGAG
FTIQGVYGVTNYNLSYLIPSMCAVDMIVAFFFIWVVRKKPDSYIRLNS*k*ki*kyp*ik
kkkk


Frame C:
iqniiyl*rfyihlvlc*vll***hqlyy*ly*iqnslqiepnwrviv*cllgv*if*fi
gfhrlc*cli*syirnilerdivyfyqeeii*rlgsrmvlkyfga*flq*f*wllglaqv
lqfkvfmvlqitiylilflqcvlli*l*lfslfglleknqipi*d*ivknkkfknihk*k
kkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05006-1 (Contig-U05006-1Q)
/CSM_Contig/Contig-U05006-1Q.Seq.d
         (554 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05006-1 (Contig-U05006-1Q) /CSM_Contig/Conti...   940  0.0
Contig-U06305-1 (Contig-U06305-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U12213-1 (Contig-U12213-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U12114-1 (Contig-U12114-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U12069-1 (Contig-U12069-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U11916-1 (Contig-U11916-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U10884-1 (Contig-U10884-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U05301-1 (Contig-U05301-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U05212-1 (Contig-U05212-1Q) /CSM_Contig/Conti...    34  0.15
Contig-U04548-1 (Contig-U04548-1Q) /CSM_Contig/Conti...    34  0.15

>Contig-U05006-1 (Contig-U05006-1Q) /CSM_Contig/Contig-U05006-1Q.Seq.d
          Length = 554

 Score =  940 bits (474), Expect = 0.0
 Identities = 488/495 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaattcaaaacataatatatttataaagattttacatccacttagttttgtgctaagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaattcaaaacataatatatttataaagattttacatccacttagttttgtgctaagttt 60

                                                                       
Query: 61  tgttgtaatgataacatcaattatattattaattatattgaatccagaattcattgcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgttgtaatgataacatcaattatattattaattatattgaatccagaattcattgcaaa 120

                                                                       
Query: 121 tcgagcccaattggagggtcatagtatagtgtttgcttggtgtttaaatattttaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcgagcccaattggagggtcatagtatagtgtttgcttggtgtttaaatattttaattca 180

                                                                       
Query: 181 ttggattccaccgattatgttagtgtttgatttaatcttacataaggaacatattagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttggattccaccgattatgttagtgtttgatttaatcttacataaggaacatattagaaa 240

                                                                       
Query: 241 gagacatcgtatatttttatcaagaagaaataatttgaagacttggatcaaggatggtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gagacatcgtatatttttatcaagaagaaataatttgaagacttggatcaaggatggtgt 300

                                                                       
Query: 301 taaagtattttggtgcgtagtttctccaatgattctagtggctgcttggtttggcgcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaagtattttggtgcgtagtttctccaatgattctagtggctgcttggtttggcgcagg 360

                                                                       
Query: 361 ttttacaattcaaggtgtttatggtgttacaaattacaatttatcttatcttattccttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttttacaattcaaggtgtttatggtgttacaaattacaatttatcttatcttattccttc 420

                                                                       
Query: 421 aatgtgtgctgttgatatgattgtagcttttttctttatttgggttgttagnnnnnnncc 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||       ||
Sbjct: 421 aatgtgtgctgttgatatgattgtagcttttttctttatttgggttgttagaaaaaaacc 480

                          
Query: 481 agattcctatataag 495
           |||||||||||||||
Sbjct: 481 agattcctatataag 495


>Contig-U06305-1 (Contig-U06305-1Q) /CSM_Contig/Contig-U06305-1Q.Seq.d
          Length = 576

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 76  atcaattatattattaattatatt 99
           |||||||||||||||| |||||||
Sbjct: 255 atcaattatattattatttatatt 232


>Contig-U12213-1 (Contig-U12213-1Q) /CSM_Contig/Contig-U12213-1Q.Seq.d
          Length = 1122

 Score = 34.2 bits (17), Expect = 0.15
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 162  gtttaaatattttaatt 178
            |||||||||||||||||
Sbjct: 1024 gtttaaatattttaatt 1040


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7854
Number of Sequences: 6905
Number of extensions: 7854
Number of successful extensions: 983
Number of sequences better than 10.0: 323
length of query: 554
length of database: 5,674,871
effective HSP length: 16
effective length of query: 538
effective length of database: 5,564,391
effective search space: 2993642358
effective search space used: 2993642358
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7. 7
Homology vs DNA 
Query= Contig-U05006-1 (Contig-U05006-1Q) /CSM_Contig/Contig-U05006-1Q.Seq.d
         (554 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU262077) Dictyostelium discoideum vegetative cDNA clone:VS...   934   0.0    1
(AU262093) Dictyostelium discoideum vegetative cDNA clone:VS...   904   0.0    1
(AU037934) Dictyostelium discoideum slug cDNA, clone SSE469.      872   0.0    1
(CZ937329) 256907 Tomato EcoRI BAC Library Solanum lycopersi...    42   0.060  2
(CT971497) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.092  6
(GE402562) 293790318 Nasonia vitripennis Female Pupae Nasoni...    50   0.093  1
(CT009674) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.13   6
(CT956057) Zebrafish DNA sequence from clone DKEY-61L1 in li...    38   0.15   6
(AL844509) Plasmodium falciparum 3D7 chromosome 13.                36   0.30   10
(M10129) Plasmodium falciparum (isolate FC27) S-antigen gene.      48   0.37   1
(ED756756) GM_WBb0125J03.r GM_WBb Glycine max genomic clone ...    48   0.37   1
(DU935385) 357989 Tomato EcoRI BAC Library Solanum lycopersi...    48   0.37   1
(CX024656) Mdlv4-4051k12.y1 Mdlv4 Malus x domestica cDNA clo...    44   0.54   2
(BX510367) Zebrafish DNA sequence from clone DKEY-117M4 in l...    38   0.65   5
(GM694859) Sequence 98 from Patent WO2008087040.                   42   0.76   2
(GO410151) EST_ccle_evs_1031330 ccleevs mixed_tissue Caligus...    32   1.0    2
(GO410150) EST_ccle_evs_1030562 ccleevs mixed_tissue Caligus...    32   1.0    2
(GO400140) EST_ccle_evs_1041509 ccleevs mixed_tissue Caligus...    32   1.0    2
(GO400139) EST_ccle_evs_1044965 ccleevs mixed_tissue Caligus...    32   1.0    2
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69...    36   1.2    6
(AC154285) Mus musculus BAC clone RP23-452P8 from chromosome...    46   1.5    1
(AM466305) Vitis vinifera contig VV78X119936.4, whole genome...    46   1.5    1
(AL138974) Human chromosome 14 DNA sequence BAC C-2384A14 of...    46   1.5    1
(AL135878) Human chromosome 14 DNA sequence BAC R-148E17 of ...    46   1.5    1
(CU633522) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(CU468384) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(EK215057) 1095460116010 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.5    1
(EK139079) 1095454061663 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.5    1
(CR233761) Forward strand read from insert in 5'HPRT inserti...    46   1.5    1
(EC271139) TT1CE90TH Tetrahymena thermophila SB210 cDNA libr...    46   1.5    1
(EB311668) CNSN01-F-074951-501 Normalized CNS library (juven...    46   1.5    1
(CX590508) TTE00024205 Amplicon Express - Conjugative Form T...    46   1.5    1
(FF572996) TTECM30THB Tetrahymena thermophila conjugation cD...    46   1.5    1
(FF563575) TT1B585TH Tetrahymena thermophila SB210 cDNA libr...    46   1.5    1
(EV838096) TT1DZ04TV Tetrahymena thermophila SB210 cDNA libr...    46   1.5    1
(EV835007) FMMAJ32TF Tetrahymena thermophila SB210 cDNA libr...    46   1.5    1
(EV832585) FMMBY70TF Tetrahymena thermophila SB210 cDNA libr...    46   1.5    1
(AC184623) Strongylocentrotus purpuratus clone R3-3074I8, WO...    40   1.8    2
(EJ014737) 1095433013596 Global-Ocean-Sampling_GS-26-01-01-1...    34   2.2    3
(BX511137) Zebrafish DNA sequence from clone DKEY-192A11 in ...    40   2.3    4
(ER923154) MUGQ_CH252P281P24Sp6_CP411_082 CHORI-252 Vervet M...    40   2.5    2
(ET770527) CHO_OF561xd21f1.ab1 CHO_OF Nicotiana tabacum geno...    40   2.7    2
(AG444721) Mus musculus molossinus DNA, clone:MSMg01-327F08....    36   2.7    2
(CB756869) AGENCOURT_12978988 NICHD_XGC_Tad2 Xenopus laevis ...    36   2.7    2
(ET770591) CHO_OF561xd21r1.ab1 CHO_OF Nicotiana tabacum geno...    40   2.7    2
(FH004009) CHO_OF204xi19r2.ab1 CHO_OF Nicotiana tabacum geno...    42   2.8    2
(FH104878) CHO_OF3124xd01r1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   2.8    2
(CU638840) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   2.8    2
(FH105036) CHO_OF3124xd02r1.ab1 CHO_OF3 Nicotiana tabacum ge...    42   2.8    2
(CB756251) AGENCOURT_12978970 NICHD_XGC_Tad2 Xenopus laevis ...    36   2.8    2
(AM478486) Vitis vinifera contig VV78X073450.2, whole genome...    34   3.6    3
(BZ456834) BONAY07TR BO_1.6_2_KB_tot Brassica oleracea genom...    32   3.9    2
(AC194744) Gallus gallus BAC clone CH261-79G17 from chromoso...    38   4.0    3
(AC113366) Homo sapiens chromosome 5 clone RP11-109F5, compl...    40   4.1    3
(CU459030) Medicago truncatula chromosome 5 clone mth2-20d14...    34   4.3    6
(AC215748) Chlorocebus aethiops clone CH252-491E19, WORKING ...    34   5.1    4
(AC112348) Rattus norvegicus clone CH230-303F3, WORKING DRAF...    40   5.3    4
(EU852811) Saccharomyces pastorianus Weihenstephan 34/70 mit...    38   5.4    4
(CU929937) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   5.4    3
(AC214420) Populus trichocarpa clone POP111-L12, complete se...    42   5.5    3
(BX004769) Zebrafish DNA sequence from clone DKEY-15I8 in li...    44   5.7    1
(AL670680) Mouse DNA sequence from clone RP23-314D24 on chro...    44   5.7    1
(AF242432) Mus musculus Naip3 gene, exon 1; neuronal apoptos...    44   5.7    1
(AC158771) Mus musculus chromosome 15, clone RP23-450E19, co...    44   5.7    1
(AC158536) Mus musculus BAC clone RP23-29L19 from chromosome...    44   5.7    1
(FM992695) Candida dubliniensis CD36 chromosome R, complete ...    44   5.7    1
(AM489037) Vitis vinifera contig VV78X082512.3, whole genome...    44   5.7    1
(AM432380) Vitis vinifera contig VV78X188164.5, whole genome...    44   5.7    1
(AC161804) Mus musculus chromosome 15 clone RP24-250B12 map ...    44   5.7    1
(AC126665) Rattus norvegicus clone CH230-50A1, *** SEQUENCIN...    44   5.7    1
(AC123252) Rattus norvegicus clone CH230-216C22, *** SEQUENC...    44   5.7    1
(AC114378) Rattus norvegicus clone CH230-157B4, *** SEQUENCI...    44   5.7    1
(AC110460) Rattus norvegicus clone CH230-275F9, *** SEQUENCI...    44   5.7    1
(AC106137) Rattus norvegicus clone CH230-230P12, WORKING DRA...    44   5.7    1
(AC103235) Rattus norvegicus clone CH230-7N7, WORKING DRAFT ...    44   5.7    1
(AC093971) Rattus norvegicus clone CH230-7M16, WORKING DRAFT...    44   5.7    1
(AC078912) Mus musculus strain C57BL6/J chromosome 4 clone R...    44   5.7    1
(CU466545) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.7    1
(AC184560) Strongylocentrotus purpuratus clone R3-62M6, WORK...    44   5.7    1
(AC181553) Strongylocentrotus purpuratus clone R3-7G5, WORKI...    44   5.7    1
(AC181208) Strongylocentrotus purpuratus clone R3-4008N17, W...    44   5.7    1
(AC179214) Strongylocentrotus purpuratus clone R3-1107D15, W...    44   5.7    1
(AC177494) Strongylocentrotus purpuratus clone R3-1027N17, W...    44   5.7    1
(AC025795) Mus musculus chromosome 4 clone RP23-115E21 map 4...    44   5.7    1
(BC107654) Rattus norvegicus general transcription factor II...    44   5.7    1
(AK154739) Mus musculus NOD-derived CD11c +ve dendritic cell...    44   5.7    1
(BH281959) CH230-97G7.TV CHORI-230 Segment 1 Rattus norvegic...    44   5.7    1
(AZ500896) 1M0339D05R Mouse 10kb plasmid UUGC1M library Mus ...    44   5.7    1
(FT186814) Rattus norvegicus DNA, BAC clone: RNB2-394E19, 5'...    44   5.7    1
(ED382301) AUAC-aba10c05.g1 Ascaris suum whole genome shotgu...    44   5.7    1
(DE581228) Bombyx mori genomic DNA, Fosmid clone:GBMFno230_o...    44   5.7    1
(DE372119) Bombyx mori genomic DNA, BAC clone:BET_635_F05.         44   5.7    1
(DE368608) Bombyx mori genomic DNA, BAC clone:BET_623_P18.         44   5.7    1
(CE575896) tigr-gss-dog-17000366198671 Dog Library Canis lup...    44   5.7    1
(CC127401) NDL.48D8.SP6 Notre Dame Liverpool Aedes aegypti g...    44   5.7    1
(AG302519) Mus musculus molossinus DNA, clone:MSMg01-082A24....    44   5.7    1
(DN201272) USDA-FP_136363 Asian citrus psyllid Diaphorina ci...    44   5.7    1
(DB839133) Nilaparvata lugens mRNA, EST clone:NLTH5203, 5' e...    44   5.7    1
(AM091251) Lutzomyia longipalpis EST clone NSFM-71a11, seque...    44   5.7    1
(CK524308) rswea0_010777.y1 swe Bombyx mori cDNA, mRNA seque...    44   5.7    1
(CK522104) rswea0_007195.y1 swe Bombyx mori cDNA, mRNA seque...    44   5.7    1
(CB234937) AGENCOURT_11443966 NIH_MGC_166 Mus musculus cDNA ...    44   5.7    1
(BY763920) Mus musculus NOD-derived CD11c +ve dendritic cell...    44   5.7    1
(BI412531) 602990965F1 NCI_CGAP_Lu33 Mus musculus cDNA clone...    44   5.7    1
(AE015927) Clostridium tetani E88, complete genome.                44   5.7    1
(AQ581851) RPCI-11-454A20.TJ RPCI-11 Homo sapiens genomic cl...    36   5.8    2
(AC181253) Strongylocentrotus purpuratus clone R3-4011A11, W...    42   6.4    2
(AC125194) Mus musculus BAC clone RP23-275K6 from chromosome...    32   6.5    5
(AF538053) Monosiga brevicollis mitochondrion, complete genome.    32   6.8    5
(AC184189) Strongylocentrotus purpuratus clone R3-3020E17, W...    42   6.9    2
(EL505258) F10_1445_302.AB1 Blood stage Plasmodium falciparu...    36   7.2    2
(AC073318) Homo sapiens BAC clone RP11-266F12 from 7, comple...    34   7.4    5
(AC202366) Medicago truncatula clone mth2-71c4, WORKING DRAF...    32   7.5    5
(EL496244) G01_PFBAMHI-M-T3-PLATE2A.AB1 Blood stage Plasmodi...    36   7.5    2
(FC850445) CBHN6320.rev CBHN Metridium senile tentacle Metri...    38   7.9    2
(CR940353) Theileria annulata genomic DNA chromosome 4.            32   8.7    2
(FI736240) BOT01-82F17TR BOT01 Brassica oleracea genomic clo...    34   10.0   2

>(AU262077) Dictyostelium discoideum vegetative cDNA clone:VSB533,
           3' end single read.
          Length = 555

 Score =  934 bits (471), Expect = 0.0
 Identities = 471/471 (100%)
 Strand = Plus / Plus


Query: 1   aaattcaaaacataatatatttataaagattttacatccacttagttttgtgctaagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaattcaaaacataatatatttataaagattttacatccacttagttttgtgctaagttt 60


Query: 61  tgttgtaatgataacatcaattatattattaattatattgaatccagaattcattgcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgttgtaatgataacatcaattatattattaattatattgaatccagaattcattgcaaa 120


Query: 121 tcgagcccaattggagggtcatagtatagtgtttgcttggtgtttaaatattttaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcgagcccaattggagggtcatagtatagtgtttgcttggtgtttaaatattttaattca 180


Query: 181 ttggattccaccgattatgttagtgtttgatttaatcttacataaggaacatattagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttggattccaccgattatgttagtgtttgatttaatcttacataaggaacatattagaaa 240


Query: 241 gagacatcgtatatttttatcaagaagaaataatttgaagacttggatcaaggatggtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gagacatcgtatatttttatcaagaagaaataatttgaagacttggatcaaggatggtgt 300


Query: 301 taaagtattttggtgcgtagtttctccaatgattctagtggctgcttggtttggcgcagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 taaagtattttggtgcgtagtttctccaatgattctagtggctgcttggtttggcgcagg 360


Query: 361 ttttacaattcaaggtgtttatggtgttacaaattacaatttatcttatcttattccttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttttacaattcaaggtgtttatggtgttacaaattacaatttatcttatcttattccttc 420


Query: 421 aatgtgtgctgttgatatgattgtagcttttttctttatttgggttgttag 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatgtgtgctgttgatatgattgtagcttttttctttatttgggttgttag 471

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 697,854,360
Number of extensions: 45683205
Number of successful extensions: 4098817
Number of sequences better than 10.0: 119
Length of query: 554
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 531
Effective length of database: 102,190,702,835
Effective search space: 54263263205385
Effective search space used: 54263263205385
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U05006-1 (Contig-U05006-1Q) /CSM_Contig/Contig-U05006-1Q.Seq.d
         (554 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF363224_1(EF363224|pid:none) Supella longipalpa voucher G22 cyt...    36   0.59
AY491269_1(AY491269|pid:none) Supella longipalpa isolate B05 cyt...    36   0.59
CP001078_916(CP001078|pid:none) Clostridium botulinum E3 str. Al...    36   0.77
AY762650_2(AY762650|pid:none) Pheidole noda cytochrome c oxidase...    36   0.77
CP000950_3266(CP000950|pid:none) Yersinia pseudotuberculosis YPI...    35   1.7
CP001048_905(CP001048|pid:none) Yersinia pseudotuberculosis PB1/...    35   1.7
DQ335198_1(DQ335198|pid:none) Tetramorium bicarinatum isolate bi...    35   1.7
AY452164_2(AY452164|pid:none) Pseudolasius sp. DF-2004 cytochrom...    35   1.7
CP000720_3129(CP000720|pid:none) Yersinia pseudotuberculosis IP ...    35   1.7
AE009952_929(AE009952|pid:none) Yersinia pestis KIM, complete ge...    35   1.7
CP000485_2248(CP000485|pid:none) Bacillus thuringiensis str. Al ...    34   2.3
AY452160_2(AY452160|pid:none) Paratrechina bourbonica cytochrome...    34   2.3
BC059328_1(BC059328|pid:none) Xenopus laevis hypothetical protei...    34   2.9
AF205169_1(AF205169|pid:none) Paratemnopteryx weinsteini Pwein1 ...    34   2.9
EF492883_1(EF492883|pid:none) Blattella asahinai haplotype 1 cyt...    34   2.9
AY762651_2(AY762651|pid:none) Pheidole smythiesii cytochrome c o...    34   2.9
CP001056_1603(CP001056|pid:none) Clostridium botulinum B str. Ek...    34   2.9
EF363216_1(EF363216|pid:none) Blattella germanica voucher IB1 cy...    34   2.9
AF205170_1(AF205170|pid:none) Paratemnopteryx weinsteini Pwein2 ...    34   2.9
AB005906_1(AB005906|pid:none) Blattella lituricollis mitochondri...    34   2.9
AF205175_1(AF205175|pid:none) Neotemnopteryx styliparedra Nstyl1...    33   3.8
AF215860_7(AF215860|pid:none) Schistosoma japonicum mitochondrio...    33   3.8
CP001215_1863(CP001215|pid:none) Bacillus anthracis str. CDC 684...    33   3.8
AE017355_2391(AE017355|pid:none) Bacillus thuringiensis serovar ...    33   3.8
DQ194420_1(DQ194420|pid:none) Maoricicada campbelli voucher AR1 ...    33   3.8
U36314_1(U36314|pid:none) Aphomomyrmex afer cytochrome oxidase s...    33   3.8
AE016879_2432(AE016879|pid:none) Bacillus anthracis str. Ames, c...    33   3.8
AE017225_2431(AE017225|pid:none) Bacillus anthracis str. Sterne,...    33   3.8
DQ874261_1(DQ874261|pid:none) Ischnoptera sp. 3 DJGI-2006 cytoch...    33   3.8
CP000096_1133(CP000096|pid:none) Pelodictyon luteolum DSM 273, c...    33   5.0
DQ874323_1(DQ874323|pid:none) Pseudomops oblongata cytochrome ox...    33   5.0
AF205155_1(AF205155|pid:none) Paratemnopteryx kookabinnensis Pko...    33   5.0
AB036115_1(AB036115|pid:none) Macropanesthia sp. QMa1 mitochondr...    33   5.0
EU543539_2(EU543539|pid:none) Chondrostethus woodfordi isolate S...    33   5.0
CP000001_2356(CP000001|pid:none) Bacillus cereus E33L, complete ...    33   5.0
DQ874332_1(DQ874332|pid:none) Xestoblatta sp. 1 DJGI-2006 cytoch...    33   5.0
FJ474348_1(FJ474348|pid:none) Chondrostethus woodfordi isolate C...    33   5.0
EF051388_1(EF051388|pid:none) Kikihia sp. 'aotea east' cytochrom...    33   6.6
AF313507_1(AF313507|pid:none) Maoricicada cassiope cytochrome ox...    33   6.6
AF205173_1(AF205173|pid:none) Neotemnopteryx fulva Nfulva1 cytoc...    33   6.6
DQ194397_1(DQ194397|pid:none) Maoricicada nigra nigra voucher M....    33   6.6
AF205156_1(AF205156|pid:none) Paratemnopteryx kookabinnensis Pko...    33   6.6
AF205143_1(AF205143|pid:none) Paratemnopteryx atra Patra1 cytoch...    33   6.6
DQ874293_1(DQ874293|pid:none) Ischnoptera sp. 1 DJGI-2006 cytoch...    33   6.6
AB036103_1(AB036103|pid:none) Caeparia crenulata mitochondrial C...    33   6.6
AF189082_1(AF189082|pid:none) Cryptotermes brevis cytochrome oxi...    33   6.6
EU253879_1(EU253879|pid:none) Cryptotermes brevis voucher BYU IG...    33   6.6
DQ194417_1(DQ194417|pid:none) Maoricicada oromelaena voucher M.o...    33   6.6
AF205145_1(AF205145|pid:none) Paratemnopteryx centralensis Pcent...    33   6.6
DQ194392_1(DQ194392|pid:none) Maoricicada otagoensis maceweni vo...    33   6.6
AF205144_1(AF205144|pid:none) Paratemnopteryx atra Patra2 cytoch...    33   6.6
DQ194404_1(DQ194404|pid:none) Maoricicada mangu mangu voucher M....    33   6.6
CP001489_746(CP001489|pid:none) Brucella melitensis ATCC 23457 c...    33   6.6
CP000709_704(CP000709|pid:none) Brucella ovis ATCC 25840 chromos...    33   6.6
AF205159_1(AF205159|pid:none) Paratemnopteryx rufa Prufa1 cytoch...    33   6.6
AF189103_1(AF189103|pid:none) Kalotermes rufinotum cytochrome ox...    33   6.6
AF205160_1(AF205160|pid:none) Paratemnopteryx rufa Prufa2 cytoch...    33   6.6
DQ874294_1(DQ874294|pid:none) Ischnoptera sp. 2 DJGI-2006 cytoch...    33   6.6
DQ023095_2(DQ023095|pid:none) Monomorium pharaonis isolate momom...    33   6.6
DQ874328_1(DQ874328|pid:none) Symploce pallens cytochrome oxidas...    33   6.6
AF205164_1(AF205164|pid:none) Paratemnopteryx stonei Pstonei4 cy...    33   6.6
DQ194419_1(DQ194419|pid:none) Maoricicada campbelli voucher TSR7...    33   6.6
EU427344_3(EU427344|pid:none) Riptortus pedestris mitochondrion,...    33   6.6
DQ194398_1(DQ194398|pid:none) Maoricicada tenuis voucher M.tenui...    33   6.6
AY513406_2(AY513406|pid:none) Philya sp. CPL-2004 cytochrome oxi...    33   6.6
DQ194421_1(DQ194421|pid:none) Maoricicada campbelli voucher OMR1...    33   6.6
AF190328_1(AF190328|pid:none) Oecophylla smaragdina cytochrome c...    33   6.6
AF205147_1(AF205147|pid:none) Paratemnopteryx couloniana Pcoul c...    32   8.6
CP001078_1453(CP001078|pid:none) Clostridium botulinum E3 str. A...    32   8.6
AY513407_2(AY513407|pid:none) Hypsoprora sp. CPL-2004 cytochrome...    32   8.6
DQ194433_1(DQ194433|pid:none) Rhodopsalta cruentata voucher R.cr...    32   8.6
CP001101_1087(CP001101|pid:none) Chlorobium phaeobacteroides BS1...    32   8.6
AF205158_1(AF205158|pid:none) Paratemnopteryx rosensis Prose2 cy...    32   8.6
AF205167_1(AF205167|pid:none) Paratemnopteryx stonei Pstonei7 cy...    32   8.6
DQ181536_1(DQ181536|pid:none) Panesthia sp. SR-2005 cytochrome o...    32   8.6
EF409412_2(EF409412|pid:none) Wasmannia auropunctata isolate C1 ...    32   8.6
AB036125_1(AB036125|pid:none) Panesthia lata mitochondrial COII ...    32   8.6
AB005905_1(AB005905|pid:none) Lobopterella dimidiatipes mitochon...    32   8.6
AF205166_1(AF205166|pid:none) Paratemnopteryx stonei Pstonei6 cy...    32   8.6
AF205157_1(AF205157|pid:none) Paratemnopteryx rosensis Prose1 cy...    32   8.6
CP001102_527(CP001102|pid:none) Candidatus Amoebophilus asiaticu...    32   8.6
AF205165_1(AF205165|pid:none) Paratemnopteryx stonei Pstonei5 cy...    32   8.6
EF363209_1(EF363209|pid:none) Panesthia cribrata voucher G41 cyt...    32   8.6
FJ464085_1(FJ464085|pid:none) Kikihia sp. 'flemingi' voucher 03....    32   8.6
AP006840_1312(AP006840|pid:none) Symbiobacterium thermophilum IA...    32   8.6
AF205163_1(AF205163|pid:none) Paratemnopteryx stonei Pstonei3 cy...    32   8.6
AY513465_2(AY513465|pid:none) Metcalfiella monogramma isolate ME...    32   8.6
CP000159_2527(CP000159|pid:none) Salinibacter ruber DSM 13855, c...    32   8.6
AY363247_1(AY363247|pid:none) Bdellovibrio bacteriovorus putativ...    32   8.6

>EF363224_1(EF363224|pid:none) Supella longipalpa voucher G22
           cytochrome oxidase subunit II (COII) gene, partial cds;
           mitochondrial.
          Length = 227

 Score = 36.2 bits (82), Expect = 0.59
 Identities = 17/53 (32%), Positives = 32/53 (60%)
 Frame = +2

Query: 50  VLSFVVMITSIILLIILNPEFIANRAQLEGHSIVFAWCLNILIHWIPPIMLVF 208
           ++  ++M+ S ++++++N +FI NR  LEGH I   W +       P I+L+F
Sbjct: 30  IIIMIIMVVSYMMILLINNKFI-NRYLLEGHLIEIVWTI------APAIILIF 75

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 839,848,594
Number of extensions: 15943259
Number of successful extensions: 43595
Number of sequences better than 10.0: 89
Number of HSP's gapped: 43573
Number of HSP's successfully gapped: 89
Length of query: 184
Length of database: 1,061,185,681
Length adjustment: 121
Effective length of query: 63
Effective length of database: 665,703,473
Effective search space: 41939318799
Effective search space used: 41939318799
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.98  gvh: 0.54  alm: 0.12  top: 0.23  tms: 0.27  mit: 0.31  mip: 0.00
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 20.0 %: plasma membrane
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U05006-1 is end
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0