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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05011-1
Contig ID Contig-U05011-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U05011-1 (Contig-U05011-1Q) /CSM_Contig/Contig-U05011-1Q.Seq.d
AAAAATAATTTTACACTTTTTATTTTTAATATTGATAATTTTATTTCATT
AAAATATTATTTATTATTTATCACAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGAAAAATCAATTTTATTTTCCAAGTTATTTTATAATATCAATTTTATT
TATATTAATAAATGGTAGTATGGGAAATTCGTTTTATGGTACATCAAAAG
ATAAATATTATCAAGTTGAATCATTTAATAACCCAAATTGTGAGGGTGGA
CCTATACAATACCAAGCAATTTTAAAAGGGACAGAATATTGTTTTTCCAT
GCCATATTTCCAACTTGATTGTTCAGGTGGATTTGAAAATAGCACAAGGG
ATTGTTATTTTTCTATGTCTTGTTTTTGTGGAGAAGATTGTAGATATTAT
ATAAATCTAAATGAATGCGTTCAAGTATTAAATACATCCTTTAAAGTTGT
TTATAAAATAATAAATTATAAAGAAAAGGATTTTTGTCAAATAACTGAAA
CTTATAAAACTTTCTGATGAAAGAATTTGGAGATATAGATTAGATGGATT
ACAAGTATTTAAAAAGGGTGTTTGTTTGTATGGTGGAAGTATTGATTGTG
ATGAGGNNNTTTACTTATTTTTATTATTGTAATTCAACAAACCTCTCAAT
AAAATTACAAACAAAAATGTCAAATAATGCAATTTCATATTCGACAAGAA
AAAATGGTGAAACAGGGTCACATTATTTTTACCCAAACGATCCAAATTTC
CTAATTAAACCTATACCAAATAATGCTTTCAATACAATTAGTTCTAATTT
TACATTTCCATTTTTTTTAATTTTAGTTTTTTTATTTATATTATAAATTG
TAATTTTATTTAATCTATTTTTAGAAAAAAAAAAAAATAAAAATAAAAAT
AAAAAAAAAATAAAAAAAAAAAAAAAATAAAAANAAAAATAAATACTGTT
TTAAAA
Gap no gap
Contig length 956
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3885913
End point 3884957
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U05011
List of clone(s) 

est1=SSE508E,1,957
Translated Amino Acid sequence 
kiilhflfliliilfh*NIIYYLSQKKKKKKKKMKNQFYFPSYFIISILFILINGSMGNS
FYGTSKDKYYQVESFNNPNCEGGPIQYQAILKGTEYCFSMPYFQLDCSGGFENSTRDCYF
SMSCFCGEDCRYYINLNECVQVLNTSFKVVYKIINYKEKDFCQITETYKTF**knlei*i
rwitsi*kgclfvwwky*l**gxllifiiviqqtsq*nykqkcqimqfhirqekmvkqgh
iiftqtiqis*lnlyqimlsiqlvlilhfhff*f*ffylyykl*fyliyf*kkkkikiki
kkk*kkkknkxknkycfk
Translated Amino Acid sequence (All Frames) 
Frame A:
knnftlfifnidnfislkyyllfitkkkkkkkkneksilfsklfyninfiyinkw*ygkf
vlwyikr*ilss*ii**pkl*gwtytipsnfkrdrilffhaifpt*lfrwi*k*hkgllf
fyvlflwrrl*ilyksk*mrssikyil*scl*nnkl*rkgflsnn*nl*nflmkefgdid
*mdykylkrvfvcmvevlivmrxftyfyycnstnlsiklqtkmsnnaisystrkngetgs
hyfypndpnflikpipnnafntissnftfpfflilvflfil*ivilfnlflekkknknkn
kkkikkkkk*kxk*ilf*


Frame B:
kiilhflfliliilfh*NIIYYLSQKKKKKKKKMKNQFYFPSYFIISILFILINGSMGNS
FYGTSKDKYYQVESFNNPNCEGGPIQYQAILKGTEYCFSMPYFQLDCSGGFENSTRDCYF
SMSCFCGEDCRYYINLNECVQVLNTSFKVVYKIINYKEKDFCQITETYKTF**knlei*i
rwitsi*kgclfvwwky*l**gxllifiiviqqtsq*nykqkcqimqfhirqekmvkqgh
iiftqtiqis*lnlyqimlsiqlvlilhfhff*f*ffylyykl*fyliyf*kkkkikiki
kkk*kkkknkxknkycfk


Frame C:
k*fytfyf*y**fyfikilfiiyhkkkkkkkkk*kinfifqvil*yqfyly**mvvweir
fmvhqkiniiklnhlitqivrvdlyntkqf*kgqnivfpchisnlivqvdlkiaqgivif
lclvfvekivdii*i*mnafky*ihplklfik**iikkrifvk*lkliklsderiwryrl
dglqvfkkgvclyggsidcdexxylflll*fnkplnkitnknvk*cnfifdkkkw*nrvt
lflpkrskfpn*tytk*cfqyn*f*fyisiffnfsffiyiincnfi*sifrkkkk*k*k*
kknkkkkkikxkintvlk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05011-1 (Contig-U05011-1Q)
/CSM_Contig/Contig-U05011-1Q.Seq.d
         (956 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05011-1 (Contig-U05011-1Q) /CSM_Contig/Conti...  1247  0.0
Contig-U04297-1 (Contig-U04297-1Q) /CSM_Contig/Conti...    38  0.017
Contig-U14714-1 (Contig-U14714-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U12081-1 (Contig-U12081-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U00011-1 (Contig-U00011-1Q) /CSM_Contig/Conti...    36  0.067
Contig-U13049-1 (Contig-U13049-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U12907-1 (Contig-U12907-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U12497-1 (Contig-U12497-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U12098-1 (Contig-U12098-1Q) /CSM_Contig/Conti...    34  0.27
Contig-U12032-1 (Contig-U12032-1Q) /CSM_Contig/Conti...    34  0.27

>Contig-U05011-1 (Contig-U05011-1Q) /CSM_Contig/Contig-U05011-1Q.Seq.d
          Length = 956

 Score = 1247 bits (629), Expect = 0.0
 Identities = 638/638 (100%)
 Strand = Plus / Plus

                                                                       
Query: 160 aaatggtagtatgggaaattcgttttatggtacatcaaaagataaatattatcaagttga 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 aaatggtagtatgggaaattcgttttatggtacatcaaaagataaatattatcaagttga 219

                                                                       
Query: 220 atcatttaataacccaaattgtgagggtggacctatacaataccaagcaattttaaaagg 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 atcatttaataacccaaattgtgagggtggacctatacaataccaagcaattttaaaagg 279

                                                                       
Query: 280 gacagaatattgtttttccatgccatatttccaacttgattgttcaggtggatttgaaaa 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gacagaatattgtttttccatgccatatttccaacttgattgttcaggtggatttgaaaa 339

                                                                       
Query: 340 tagcacaagggattgttatttttctatgtcttgtttttgtggagaagattgtagatatta 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tagcacaagggattgttatttttctatgtcttgtttttgtggagaagattgtagatatta 399

                                                                       
Query: 400 tataaatctaaatgaatgcgttcaagtattaaatacatcctttaaagttgtttataaaat 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tataaatctaaatgaatgcgttcaagtattaaatacatcctttaaagttgtttataaaat 459

                                                                       
Query: 460 aataaattataaagaaaaggatttttgtcaaataactgaaacttataaaactttctgatg 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 aataaattataaagaaaaggatttttgtcaaataactgaaacttataaaactttctgatg 519

                                                                       
Query: 520 aaagaatttggagatatagattagatggattacaagtatttaaaaagggtgtttgtttgt 579
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 aaagaatttggagatatagattagatggattacaagtatttaaaaagggtgtttgtttgt 579

                                                                       
Query: 580 atggtggaagtattgattgtgatgaggnnntttacttatttttattattgtaattcaaca 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atggtggaagtattgattgtgatgaggnnntttacttatttttattattgtaattcaaca 639

                                                                       
Query: 640 aacctctcaataaaattacaaacaaaaatgtcaaataatgcaatttcatattcgacaaga 699
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 aacctctcaataaaattacaaacaaaaatgtcaaataatgcaatttcatattcgacaaga 699

                                                                       
Query: 700 aaaaatggtgaaacagggtcacattatttttacccaaacgatccaaatttcctaattaaa 759
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 aaaaatggtgaaacagggtcacattatttttacccaaacgatccaaatttcctaattaaa 759

                                                 
Query: 760 cctataccaaataatgctttcaatacaattagttctaa 797
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 760 cctataccaaataatgctttcaatacaattagttctaa 797


 Score = 34.2 bits (17), Expect = 0.27
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 940 taaatactgttttaaaa 956
           |||||||||||||||||
Sbjct: 940 taaatactgttttaaaa 956


>Contig-U04297-1 (Contig-U04297-1Q) /CSM_Contig/Contig-U04297-1Q.Seq.d
          Length = 573

 Score = 38.2 bits (19), Expect = 0.017
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 193 atcaaaagataaatattatcaag 215
           |||||||||||||||| ||||||
Sbjct: 201 atcaaaagataaatataatcaag 223


>Contig-U14714-1 (Contig-U14714-1Q) /CSM_Contig/Contig-U14714-1Q.Seq.d
          Length = 718

 Score = 36.2 bits (18), Expect = 0.067
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 447 ttgtttataaaataataaatta 468
           |||||||||| |||||||||||
Sbjct: 164 ttgtttataatataataaatta 143


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,370
Number of Sequences: 6905
Number of extensions: 14370
Number of successful extensions: 1849
Number of sequences better than 10.0: 172
length of query: 956
length of database: 5,674,871
effective HSP length: 16
effective length of query: 940
effective length of database: 5,564,391
effective search space: 5230527540
effective search space used: 5230527540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 7. 8
Homology vs DNA 
Query= Contig-U05011-1 (Contig-U05011-1Q) /CSM_Contig/Contig-U05011-1Q.Seq.d
         (956 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C92515) Dictyostelium discoideum slug cDNA, clone SSE508.        371   e-151  2
(AU072435) Dictyostelium discoideum slug cDNA, clone SSE508.      159   2e-34  1
(AC235817) Glycine max strain Williams 82 clone GM_WBa0006O0...    46   0.016  6
(AM397722) Marsupella sparsifolia chloroplast tRNA-Gly gene,...    38   0.034  2
(ED775860) GM_WBb0152M09.f GM_WBb Glycine max genomic clone ...    46   0.039  2
(BX321890) Zebrafish DNA sequence from clone CH211-258D5 in ...    46   0.056  4
(BQ475154) cicindela2c02.b Cicindela campestris cDNA Cicinde...    36   0.13   2
(BQ475747) cicindela2c02.b.2 Cicindela campestris cDNA Cicin...    36   0.13   2
(BQ475674) cicindela1a01.b.2 Cicindela campestris cDNA Cicin...    36   0.13   2
(FF578721) TTEDO67THB Tetrahymena thermophila conjugation cD...    36   0.19   3
(CX578068) TTE00027693 Amplicon Express - Conjugative Form T...    36   0.22   3
(CS468856) Sequence 47 from Patent EP1748080.                      40   0.23   5
(CS468855) Sequence 46 from Patent EP1748080.                      40   0.23   5
(CS419333) Sequence 47 from Patent WO2006094836.                   40   0.23   5
(CS419332) Sequence 46 from Patent WO2006094836.                   40   0.23   5
(EJ824907) 1093017555362 Global-Ocean-Sampling_GS-30-02-01-1...    36   0.31   3
(AC152883) Bos taurus clone CH240-13N24, WORKING DRAFT SEQUE...    48   0.64   1
(AC152882) Bos taurus clone CH240-13A19, WORKING DRAFT SEQUE...    48   0.64   1
(AC103756) Homo sapiens chromosome 15 clone RP11-784A9 map 1...    48   0.64   1
(AC224548) Bos taurus clone CH240-482F19, WORKING DRAFT SEQU...    48   0.64   1
(AC182050) Bos taurus clone CH240-487G19, WORKING DRAFT SEQU...    48   0.64   1
(AG303742) Mus musculus molossinus DNA, clone:MSMg01-083L02....    48   0.64   1
(EG784438) EST_ssal_evd_40778 ssalevd thymus Salmo salar cDN...    48   0.64   1
(EG784437) EST_ssal_evd_40777 ssalevd thymus Salmo salar cDN...    48   0.64   1
(AC184620) Strongylocentrotus purpuratus clone R3-3074H8, WO...    40   0.65   6
(EJ406222) 1093012098016 Global-Ocean-Sampling_GS-28-01-01-1...    34   1.0    3
(FG289817) 1108793307980 New World Screwworm Egg 9261 ESTs C...    38   1.3    3
(AC176252) Strongylocentrotus purpuratus clone R3-3060I22, W...    40   1.3    4
(FG290522) 1108793323765 New World Screwworm Egg 9261 ESTs C...    38   1.4    3
(FG286635) 1108770723708 New World Screwworm Egg 9261 ESTs C...    38   1.5    3
(AM474816) Vitis vinifera, whole genome shotgun sequence, co...    34   1.5    2
(GE663337) CBUF6827.g1 B.anynana_abdomen_2-10kb Bicyclus any...    38   1.6    2
(CZ537675) SRAA-aad14g05.b1 Strongyloides ratti whole genome...    34   1.7    2
(AM397727) Nardia scalaris chloroplast tRNA-Gly gene, specim...    32   1.8    2
(EX606115) 255354377 Pea aphid whole body normalized full le...    40   1.9    2
(EU306659) Medicago truncatula zinc finger protein, GH1 prot...    34   1.9    8
(AC203546) Medicago truncatula clone mth2-70e3, WORKING DRAF...    34   2.2    5
(AC176244) Strongylocentrotus purpuratus clone R3-3061P23, W...    38   2.3    4
(AC139873) Rattus norvegicus clone CH230-80C10, WORKING DRAF...    36   2.4    5
(AE014185) Plasmodium falciparum 3D7 chromosome 10, complete...    40   2.5    12
(AL732527) Mouse DNA sequence from clone RP23-259B18 on chro...    46   2.5    1
(AM463047) Vitis vinifera contig VV78X085063.24, whole genom...    46   2.5    1
(AM443253) Vitis vinifera contig VV78X177495.5, whole genome...    46   2.5    1
(CQ572999) Sequence 757 from Patent WO0171042.                     46   2.5    1
(DQ242969) Bombyx mori chromosome 24 microsatellite S2411-F ...    46   2.5    1
(AE013599) Drosophila melanogaster chromosome 2R, complete s...    46   2.5    1
(AC007477) Drosophila melanogaster, chromosome 2R, region 41...    46   2.5    1
(CU640402) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.5    1
(CT971492) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    46   2.5    1
(AP010104) Lotus japonicus genomic DNA, clone: LjT44F11, TM0...    46   2.5    1
(AC234610) Sus scrofa clone RP44-284N15, WORKING DRAFT SEQUE...    46   2.5    1
(AC226014) Solanum lycopersicum chromosome 6 clone C06SLm002...    46   2.5    1
(AC225964) Sus scrofa clone RP44-431N14, WORKING DRAFT SEQUE...    46   2.5    1
(AC018130) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    46   2.5    1
(AC006595) Homo sapiens, *** SEQUENCING IN PROGRESS ***, 4 u...    46   2.5    1
(AZ398212) 1M0163G06R Mouse 10kb plasmid UUGC1M library Mus ...    46   2.5    1
(DX553184) GH_MBb0041N23f GH_MBb Gossypium hirsutum genomic ...    46   2.5    1
(DX410351) SOYFS18TH LargeInsertSoybeanGenLibBuild4 Glycine ...    46   2.5    1
(CW974233) AIAA-aaa69b03.g1 Ancylostoma caninum whole genome...    46   2.5    1
(DR074596) ik97f07.g1 Ginkgo male leaf (NYBG) Ginkgo biloba ...    46   2.5    1
(EX931967) li67a07.g7 Ginkgo microsporophyll (NYBG) Ginkgo b...    46   2.5    1
(ER591988) 1093016202836 Global-Ocean-Sampling_GS-36-01-01-2...    36   2.6    3
(AC060830) Homo sapiens chromosome 11 clone RP11-529A4, WORK...    36   2.7    5
(AC178274) Strongylocentrotus purpuratus clone R3-3093D16, W...    40   2.7    5
(AC179932) Strongylocentrotus purpuratus clone R3-3031F8, WO...    40   2.9    7
(AC124222) Rattus norvegicus  BAC CH230-453H12 () complete s...    36   3.0    5
(AC201243) Strongylocentrotus purpuratus clone R3-15K9, WORK...    40   3.3    3
(AM449793) Vitis vinifera contig VV78X149831.8, whole genome...    38   3.5    2
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       32   3.6    11
(AC201637) Strongylocentrotus purpuratus clone R3-3104M9, WO...    40   4.4    7
(DQ366735) Uncultured Prochlorococcus marinus clone HOT0M-2B...    40   4.6    3
(CU468652) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.8    2
(AC176489) Strongylocentrotus purpuratus clone R3-307108, WO...    40   4.8    3
(AZ267984) RPCI-23-127O5.TV RPCI-23 Mus musculus genomic clo...    34   4.8    2
(CU915411) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   4.9    2
(AC178591) Strongylocentrotus purpuratus clone R3-113M07, WO...    40   5.4    4
(AB102768) Oryzias latipes plscr1, zic4, zic1 genes for phos...    36   5.7    4
(CS605097) Sequence 4083 from Patent WO2007039234.                 38   5.7    2
(CS603449) Sequence 2435 from Patent WO2007039234.                 38   5.7    2
(AC176612) Strongylocentrotus purpuratus clone R3-114C05, WO...    40   5.9    3
(AM434763) Vitis vinifera contig VV78X216597.20, whole genom...    44   6.0    2
(AM613376) Entamoeba invadens IP1 GSS, clone inv035f08.q1k.        40   6.2    2
(AC184792) Zea mays chromosome 5 clone CH201-144D14; ZMMBBc0...    38   6.2    3
(CL515401) SAIL_89_H04.v1 SAIL Collection Arabidopsis thalia...    34   6.2    2
(DD000852) PLANT ARTIFICIAL CHROMOSOME COMPOSITIONS AND METH...    40   6.3    2
(AX059537) Sequence 270 from Patent WO0055325.                     40   6.3    2
(GO301666) AHPZ404.fwd AHPZ Teleopsis dalmanni Late larval e...    40   6.4    2
(DU500156) 1098421143309 CHORI-243 Ovis aries genomic clone ...    32   6.5    2
(EB628015) AGENCOURT_56922846 D. grimshawi EST Drosophila gr...    34   6.5    2
(AM479422) Vitis vinifera contig VV78X055344.2, whole genome...    40   6.6    3
(DX220984) OR_ABa0097G21.r OR_ABa Oryza ridleyi genomic clon...    38   6.7    2
(AF128393) Arabidopsis thaliana BAC T1J1.                          40   6.7    2
(BX322581) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.8    4
(GR130247) CCBX14825.g1 CCBX Mimulus guttatus IM62 floral bu...    40   7.0    2
(EI333607) GM_WBc0074H11.f GM_WBc Glycine max genomic clone ...    38   7.0    2
(EI333879) GM_WBc0074N11.f GM_WBc Glycine max genomic clone ...    38   7.3    2
(BX571883) Zebrafish DNA sequence from clone DKEY-151P17 in ...    40   7.4    4
(AC151521) Medicago truncatula chromosome 7 clone mte1-49d11...    34   7.5    5
(AP004607) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    36   7.9    4
(AM470689) Vitis vinifera contig VV78X221801.13, whole genom...    38   8.0    3
(AM469701) Vitis vinifera contig VV78X210538.5, whole genome...    40   8.0    2
(CR749176) Zebrafish DNA sequence from clone DKEY-43B13 in l...    42   8.2    5
(ED678068) GM_WBb0009O04.f GM_WBb Glycine max genomic clone ...    38   8.2    2
(CZ526772) GMW2-152M9a.b1 GMW2 Glycine max genomic, genomic ...    38   8.6    2
(EK232714) 1095460185814 Global-Ocean-Sampling_GS-31-01-01-1...    30   8.7    3
(CR555301) Zebrafish DNA sequence from clone CH211-129A13 in...    40   8.9    7
(CG008635) ZUAHC63TV ZM_3.0_4.0_KB Zea mays genomic clone ZM...    38   9.0    2

>(C92515) Dictyostelium discoideum slug cDNA, clone SSE508.
          Length = 457

 Score =  371 bits (187), Expect(2) = e-151
 Identities = 187/187 (100%)
 Strand = Plus / Plus


Query: 610 tttacttatttttattattgtaattcaacaaacctctcaataaaattacaaacaaaaatg 669
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tttacttatttttattattgtaattcaacaaacctctcaataaaattacaaacaaaaatg 162


Query: 670 tcaaataatgcaatttcatattcgacaagaaaaaatggtgaaacagggtcacattatttt 729
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 tcaaataatgcaatttcatattcgacaagaaaaaatggtgaaacagggtcacattatttt 222


Query: 730 tacccaaacgatccaaatttcctaattaaacctataccaaataatgctttcaatacaatt 789
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tacccaaacgatccaaatttcctaattaaacctataccaaataatgctttcaatacaatt 282


Query: 790 agttcta 796
           |||||||
Sbjct: 283 agttcta 289

 Score =  198 bits (100), Expect(2) = e-151
 Identities = 100/100 (100%)
 Strand = Plus / Plus


Query: 507 aaactttctgatgaaagaatttggagatatagattagatggattacaagtatttaaaaag 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaactttctgatgaaagaatttggagatatagattagatggattacaagtatttaaaaag 60


Query: 567 ggtgtttgtttgtatggtggaagtattgattgtgatgagg 606
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggtgtttgtttgtatggtggaagtattgattgtgatgagg 100

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 1,070,979,665
Number of extensions: 72696887
Number of successful extensions: 6107436
Number of sequences better than 10.0: 108
Length of query: 956
Length of database: 104,622,809,269
Length adjustment: 24
Effective length of query: 932
Effective length of database: 102,084,959,077
Effective search space: 95143181859764
Effective search space used: 95143181859764
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.31
Homology vs Protein 
Query= Contig-U05011-1 (Contig-U05011-1Q) /CSM_Contig/Contig-U05011-1Q.Seq.d
         (956 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP010935_1000(AP010935|pid:none) Streptococcus dysgalactiae subs...    34   6.6

>AP010935_1000(AP010935|pid:none) Streptococcus dysgalactiae subsp.
           equisimilis GGS_124 DNA, complete genome.
          Length = 436

 Score = 34.3 bits (77), Expect = 6.6
 Identities = 21/69 (30%), Positives = 37/69 (53%)
 Frame = +1

Query: 568 VFVCMVEVLIVMRXFTYFYYCNSTNLSIKLQTKMSNNAISYSTRKNGETGSHYFYPNDPN 747
           +FV M  +++ +  F  +   +S+ +S+      SNNA SY+ R      S YF  +  N
Sbjct: 26  IFVVMTIIILQIMRFGVYSSVDSSLISV------SNNASSYANRTMARISSFYF--DAEN 77

Query: 748 FLIKPIPNN 774
            +IKP+P++
Sbjct: 78  NVIKPLPDS 86

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 1,201,817,518
Number of extensions: 22403938
Number of successful extensions: 62324
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62275
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 1,061,185,681
Length adjustment: 128
Effective length of query: 190
Effective length of database: 642,824,337
Effective search space: 122136624030
Effective search space used: 122136624030
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.19  gvh: 0.56  alm: 0.31  top: -0.07  tms: 0.07  mit: 0.30  mip: 0.00
 nuc: 0.20  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.50  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 20.0 %: nuclear
	 16.0 %: Golgi
	 16.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U05011-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0