Contig-U01121-1
Contig ID Contig-U01121-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01121-1 (Contig-U01121-1Q) /CSM_Contig/Contig-U01121-1Q.Seq.d
GATAATGAAAAGCCAATAAAAGAAAAAAAAAAAAAAAAACCTATAAATAA
ATAAAAATAAAATTAAGATATAAAAAAAATAACATAATAGCAATAAATAT
AAACAGTTATAAAAAATGGTAGTTTCAAAGAAACCTTTCATTTATACTGT
TGGAGCGGTTTTAATTATAGTTTTAATATTTCAAATGAATTATTATTTTA
GAATCGATTCAAAATTAACAGAAAGAGATGTAAAAAATTCAGTAAATGGT
GGAATATCAGGAGGAATAAATAGGAATGTGGTAGGAGAAGAGATAGATCC
AACCATATTTGTATCATTAGCAGCATATAGGGATGTATTTTGTTCAGACA
CTATAAATTATATATTTAATCATGCCAATCGACCAGAGAAAATATTCATT
GGTATAGTAGATCAAGGATCAGAGTTTTTAGAGGAAGATCCAAATCAAGA
TCCATCATTTCCAAATTCATACTGTTATAGGGGGTTAAAGGTAGCACCCG
AATTGATACAATCAAATGTTAGAAGAATAGCATTGACAGTGGCACAATCG
AAAGGACCAACATTAGCACGTTATTATGCAACAACCCTCTACAACAATGA
GACATATTTCATGCAAGTCGATAGTCATCTACGTTTTATTA---------
-GTTGGGATTCATTGATTATCAATGATCTTTGGTTGACAAAATCATACGC
ACCTATTGGTGAAAATGGTATACCACGTACCGTATTAACTCATTATCCAA
TGGCTTACAATGTTGAAGATAGTGGTTTACCAGTGATTGATCAAACAGGT
GTACCAAGATTATGTAAAGGTGAATTCAATTCTCGTGGTATCATCACCTT
CAATTCATTCATCCTAAAGGCAACAACTAAGCCTGCCGAATGTCCTTACA
TTGCCGCTGGTTTCTTTTTCACCTCTGGTGAAGCAATTAAATTGGTACCA
TTTGATCCTCATCTTTCAAATCTATTCGAAGGTGAAGAAATTCTATACAG
TGTTAGAATGTATTCAGCTGGATTTAGATTCTTTGCTCCAACTCTCAACG
TTTGTTTTCACTATTACTCTCGTCCAAAATCTCCAAAATTCTGGGAAGAT
AATAAACAATACTATTTAGATATGCAAAAATCGGTTGAACGTTTAAAATA
CATCTTACGTTGGCCTTTAGAGAATACTCCTGATCTCTCTGAACCACAAT
TTGCTGAAATCGATAAATATACCATTGCTAATACATACCATTTTAACTGA
ATATTATCAACGTTGGAAAATTGATGTTGAAAATAAAAAAGTACATTGGC
ATCAATTTTGTGATCAACAACCTCCACAAGAATAAATTTTATAATATATA
ATAAATAAATAAATAAAAAGAAATAAAAATAATAAAATAATAAAATAATA
AAATTAATTTAATTGTTTTTGTATGATAAAA

Gap gap included
Contig length 1421
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 51726
End point 50302
Strand (PLUS/MINUS) MINUS
Number of clones 11
Number of EST 13
Link to clone list U01121
List of clone(s)

est1=SLJ654F,1,292
est2=SLB326F,8,642
est3=SLC558F,8,639
est4=SSM226F,11,339
est5=SFE430Z,643,1341
est6=AFO339Z,677,1362
est7=AFH874Z,684,1396
est8=SLE662Z,703,1377
est9=SSM226Z,755,1392
est10=SLF365Z,890,1409
est11=SLC474Z,913,1343
est12=SLF147Z,937,1417
est13=SLB326Z,1062,1422
Translated Amino Acid sequence
imksq*kkkkkknl*inknkiki*kk*hnsnkykql*KMVVSKKPFIYTVGAVLIIVLIF
QMNYYFRIDSKLTERDVKNSVNGGISGGINRNVVGEEIDPTIFVSLAAYRDVFCSDTINY
IFNHANRPEKIFIGIVDQGSEFLEEDPNQDPSFPNSYCYRGLKVAPELIQSNVRRIALTV
AQSKGPTLARYYATTLYNNETYFMQVDSHLRFI---

---WDSLIINDLWLTKSYAPIGENGIPRTVLTHYPMAYNVEDSGLPVIDQTGVPRLCKGE
FNSRGIITFNSFILKATTKPAECPYIAAGFFFTSGEAIKLVPFDPHLSNLFEGEEILYSV
RMYSAGFRFFAPTLNVCFHYYSRPKSPKFWEDNKQYYLDMQKSVERLKYILRWPLENTPD
LSEPQFAEIDKYTIANTYHFN*ilstlen*c*k*kstlasil*sttstrinfiiynk*in
kkk*k**nnkiikli*lflydk


Translated Amino Acid sequence (All Frames)
Frame A:
dnekpikekkkkkpink*k*n*dikkit**q*i*tvikngsfketfhlycwsgfnysfni
snellf*nrfkinrkrckkfskwwnirrnk*ecgrrrdrsnhiciissi*gcilfrhykl
yi*scqstrenihwysrsrirvfrgrsksrsiiskfill*gvkgstridtikc*knsids
gtiertnistllcnnplqq*difhasr*sstfy---

---vgih*lsmifg*qnhthllvkmvyhvpy*liiqwltmlkivvyq*likqvyqdyvkv
nsilvvsspsihss*rqqlslpnvltlplvsfsplvkqlnwyhlilifqiyskvkkfytv
leciqldldsllqlstfvftitlvqnlqnsgkiinnti*icknrlnv*ntsyvgl*rill
islnhnllksinipllihtilteyyqrwkidvenkkvhwhqfcdqqppqe*il*yiink*
ikrnknnkiik**n*fncfcmik

Frame B:
imksq*kkkkkknl*inknkiki*kk*hnsnkykql*KMVVSKKPFIYTVGAVLIIVLIF
QMNYYFRIDSKLTERDVKNSVNGGISGGINRNVVGEEIDPTIFVSLAAYRDVFCSDTINY
IFNHANRPEKIFIGIVDQGSEFLEEDPNQDPSFPNSYCYRGLKVAPELIQSNVRRIALTV
AQSKGPTLARYYATTLYNNETYFMQVDSHLRFI---

---lgfidyq*slvdkiirtyw*kwyttyrinslsnglqc*r*wftsd*snrctkim*r*
iqfswyhhlqfihpkgnn*acrmslhcrwflfhlw*sn*igti*sssfksirr*rnsiqc
*nvfswi*ilcsnsqrlfslllsskiskilgr**tilfryakig*tfkihltlafreys*
sl*ttic*nr*iyhc*yipf*lniinvgklmlkikkyiginfvinnlhknkfyni**ink
*keikiik**nnkinlivfv**

Frame C:
**kankrkkkkktyk*ikiklrykknniiaininsykkw*fqrnlsfillerf*l*f*yf
k*iiilesiqn*qkem*kiq*mveyqee*igmw*ekr*iqpylyh*qhigmyfvqtl*ii
ylimpidqrkyslv**ikdqsf*rkiqikihhfqihtvigg*r*hpn*ynqmlee*h*qw
hnrkdqh*hvimqqpsttmrhiscksiviyvll---

---WDSLIINDLWLTKSYAPIGENGIPRTVLTHYPMAYNVEDSGLPVIDQTGVPRLCKGE
FNSRGIITFNSFILKATTKPAECPYIAAGFFFTSGEAIKLVPFDPHLSNLFEGEEILYSV
RMYSAGFRFFAPTLNVCFHYYSRPKSPKFWEDNKQYYLDMQKSVERLKYILRWPLENTPD
LSEPQFAEIDKYTIANTYHFN*ilstlen*c*k*kstlasil*sttstrinfiiynk*in
kkk*k**nnkiikli*lflydk

own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01121-1 (Contig-U01121-1Q)
/CSM_Contig/Contig-U01121-1Q.Seq.d
(1431 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01121-1 (Contig-U01121-1Q) /CSM_Contig/Conti... 2420 0.0
Contig-U12118-1 (Contig-U12118-1Q) /CSM_Contig/Conti... 40 0.009
Contig-U11474-1 (Contig-U11474-1Q) /CSM_Contig/Conti... 40 0.009
Contig-U14024-1 (Contig-U14024-1Q) /CSM_Contig/Conti... 38 0.036
Contig-U11243-1 (Contig-U11243-1Q) /CSM_Contig/Conti... 38 0.036
Contig-U14130-1 (Contig-U14130-1Q) /CSM_Contig/Conti... 36 0.14
Contig-U11745-1 (Contig-U11745-1Q) /CSM_Contig/Conti... 36 0.14
Contig-U10209-1 (Contig-U10209-1Q) /CSM_Contig/Conti... 36 0.14
Contig-U06805-1 (Contig-U06805-1Q) /CSM_Contig/Conti... 36 0.14
Contig-U04752-1 (Contig-U04752-1Q) /CSM_Contig/Conti... 36 0.14

>Contig-U01121-1 (Contig-U01121-1Q) /CSM_Contig/Contig-U01121-1Q.Seq.d
Length = 1431

Score = 2420 bits (1221), Expect = 0.0
Identities = 1251/1251 (100%)
Strand = Plus / Plus


Query: 80 taacataatagcaataaatataaacagttataaaaaatggtagtttcaaagaaacctttc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 taacataatagcaataaatataaacagttataaaaaatggtagtttcaaagaaacctttc 139


Query: 140 atttatactgttggagcggttttaattatagttttaatatttcaaatgaattattatttt 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 atttatactgttggagcggttttaattatagttttaatatttcaaatgaattattatttt 199


Query: 200 agaatcgattcaaaattaacagaaagagatgtaaaaaattcagtaaatggtggaatatca 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agaatcgattcaaaattaacagaaagagatgtaaaaaattcagtaaatggtggaatatca 259


Query: 260 ggaggaataaataggaatgtggtaggagaagagatagatccaaccatatttgtatcatta 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggaggaataaataggaatgtggtaggagaagagatagatccaaccatatttgtatcatta 319


Query: 320 gcagcatatagggatgtattttgttcagacactataaattatatatttaatcatgccaat 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gcagcatatagggatgtattttgttcagacactataaattatatatttaatcatgccaat 379


Query: 380 cgaccagagaaaatattcattggtatagtagatcaaggatcagagtttttagaggaagat 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cgaccagagaaaatattcattggtatagtagatcaaggatcagagtttttagaggaagat 439


Query: 440 ccaaatcaagatccatcatttccaaattcatactgttatagggggttaaaggtagcaccc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccaaatcaagatccatcatttccaaattcatactgttatagggggttaaaggtagcaccc 499


Query: 500 gaattgatacaatcaaatgttagaagaatagcattgacagtggcacaatcgaaaggacca 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaattgatacaatcaaatgttagaagaatagcattgacagtggcacaatcgaaaggacca 559


Query: 560 acattagcacgttattatgcaacaaccctctacaacaatgagacatatttcatgcaagtc 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acattagcacgttattatgcaacaaccctctacaacaatgagacatatttcatgcaagtc 619


Query: 620 gatagtcatctacgttttattannnnnnnnnngttgggattcattgattatcaatgatct 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gatagtcatctacgttttattannnnnnnnnngttgggattcattgattatcaatgatct 679


Query: 680 ttggttgacaaaatcatacgcacctattggtgaaaatggtataccacgtaccgtattaac 739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttggttgacaaaatcatacgcacctattggtgaaaatggtataccacgtaccgtattaac 739


Query: 740 tcattatccaatggcttacaatgttgaagatagtggtttaccagtgattgatcaaacagg 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tcattatccaatggcttacaatgttgaagatagtggtttaccagtgattgatcaaacagg 799


Query: 800 tgtaccaagattatgtaaaggtgaattcaattctcgtggtatcatcaccttcaattcatt 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tgtaccaagattatgtaaaggtgaattcaattctcgtggtatcatcaccttcaattcatt 859


Query: 860 catcctaaaggcaacaactaagcctgccgaatgtccttacattgccgctggtttcttttt 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 catcctaaaggcaacaactaagcctgccgaatgtccttacattgccgctggtttcttttt 919


Query: 920 cacctctggtgaagcaattaaattggtaccatttgatcctcatctttcaaatctattcga 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 cacctctggtgaagcaattaaattggtaccatttgatcctcatctttcaaatctattcga 979


Query: 980 aggtgaagaaattctatacagtgttagaatgtattcagctggatttagattctttgctcc 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 aggtgaagaaattctatacagtgttagaatgtattcagctggatttagattctttgctcc 1039


Query: 1040 aactctcaacgtttgttttcactattactctcgtccaaaatctccaaaattctgggaaga 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 aactctcaacgtttgttttcactattactctcgtccaaaatctccaaaattctgggaaga 1099


Query: 1100 taataaacaatactatttagatatgcaaaaatcggttgaacgtttaaaatacatcttacg 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 taataaacaatactatttagatatgcaaaaatcggttgaacgtttaaaatacatcttacg 1159


Query: 1160 ttggcctttagagaatactcctgatctctctgaaccacaatttgctgaaatcgataaata 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1160 ttggcctttagagaatactcctgatctctctgaaccacaatttgctgaaatcgataaata 1219


Query: 1220 taccattgctaatacataccattttaactgaatattatcaacgttggaaaattgatgttg 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1220 taccattgctaatacataccattttaactgaatattatcaacgttggaaaattgatgttg 1279


Query: 1280 aaaataaaaaagtacattggcatcaattttgtgatcaacaacctccacaag 1330
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1280 aaaataaaaaagtacattggcatcaattttgtgatcaacaacctccacaag 1330


Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus


Query: 1405 taatttaattgtttttgtatgataaaa 1431
|||||||||||||||||||||||||||
Sbjct: 1405 taatttaattgtttttgtatgataaaa 1431


Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 1 gataatgaaaagccaataaaag 22
||||||||||||||||||||||
Sbjct: 1 gataatgaaaagccaataaaag 22


>Contig-U12118-1 (Contig-U12118-1Q) /CSM_Contig/Contig-U12118-1Q.Seq.d
Length = 2905

Score = 40.1 bits (20), Expect = 0.009
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 1005 agaatgtattcagctggatt 1024
||||||||||||||||||||
Sbjct: 1761 agaatgtattcagctggatt 1742


>Contig-U11474-1 (Contig-U11474-1Q) /CSM_Contig/Contig-U11474-1Q.Seq.d
Length = 6271

Score = 40.1 bits (20), Expect = 0.009
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 1005 agaatgtattcagctggatt 1024
||||||||||||||||||||
Sbjct: 3433 agaatgtattcagctggatt 3414


Score = 30.2 bits (15), Expect = 8.7
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 451 tccatcatttccaaa 465
|||||||||||||||
Sbjct: 3034 tccatcatttccaaa 3020


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,179
Number of Sequences: 8361
Number of extensions: 26179
Number of successful extensions: 2208
Number of sequences better than 10.0: 192
length of query: 1431
length of database: 7,895,291
effective HSP length: 16
effective length of query: 1415
effective length of database: 7,761,515
effective search space: 10982543725
effective search space used: 10982543725
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.23
Homology vs DNA
Query= Contig-U01121-1 (Contig-U01121-1Q) /CSM_Contig/Contig-U01121-1Q.Seq.d
(1431 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ345899) Dictyostelium discoideum cDNA clone:dda29n09, 3' ... 1174 0.0 3
(AF509501) Dictyostelium discoideum putative polypeptide Glc... 1154 0.0 3
(BJ400241) Dictyostelium discoideum cDNA clone:dds9l08, 3' e... 1154 0.0 4
(AF233612) Dictyostelium discoideum putative phosphatidylino... 1106 0.0 2
(BJ347573) Dictyostelium discoideum cDNA clone:dda27b15, 3' ... 1082 0.0 2
(BJ343662) Dictyostelium discoideum cDNA clone:dda16d20, 3' ... 1074 0.0 2
(BJ347149) Dictyostelium discoideum cDNA clone:dda26c08, 3' ... 1057 0.0 3
(AU038975) Dictyostelium discoideum slug cDNA, clone SSM226. 934 0.0 2
(AU034901) Dictyostelium discoideum slug cDNA, clone SLE662. 896 0.0 3
(AU060742) Dictyostelium discoideum slug cDNA, clone SLB326. 1039 0.0 1
(AU060997) Dictyostelium discoideum slug cDNA, clone SLC558. 1035 0.0 1
(AU052946) Dictyostelium discoideum slug cDNA, clone SLF365. 666 0.0 2
(AU052815) Dictyostelium discoideum slug cDNA, clone SLF147. 573 0.0 2
(AU034559) Dictyostelium discoideum slug cDNA, clone SLC474. 613 0.0 2
(AU033696) Dictyostelium discoideum slug cDNA, clone SLB326. 317 e-134 3
(AU060413) Dictyostelium discoideum slug cDNA, clone SLJ654. 347 3e-93 2
(AU074839) Dictyostelium discoideum slug cDNA, clone SSM226. 264 9e-66 1
(ER285002) 1092343555578 Global-Ocean-Sampling_GS-34-01-01-1... 44 0.092 2
(AB304075) Vigna marina chloroplast DNA, tRNA-Leu and trnL-F... 50 0.24 1
(CT797456) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.24 1
(AC168482) Strongylocentrotus purpuratus clone R3-3117M3, WO... 50 0.24 1
(AC128711) Homo sapiens 3 BAC RP11-70N22 (Roswell Park Cance... 48 0.50 6
(BV530403) G591P616633FC4.T0 Clint Pan troglodytes verus STS... 48 0.95 1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 48 0.95 1
(AC022058) Homo sapiens chromosome 8 clone RP11-482M5 map 8,... 48 0.95 1
(CP000612) Desulfotomaculum reducens MI-1, complete genome. 48 0.95 1
(AC096717) Homo sapiens BAC clone RP11-10O3 from 4, complete... 40 1.6 8
(DX532281) GH_MBb0044O22f GH_MBb Gossypium hirsutum genomic ... 36 1.8 2
(AC173841) Strongylocentrotus purpuratus clone R3-3081I1, WO... 42 3.4 4
(BX511115) Zebrafish DNA sequence from clone CH211-101B18 in... 46 3.7 1
(AL929072) Zebrafish DNA sequence from clone CH211-140B8. 46 3.7 1
(AC154684) Mus musculus BAC clone RP23-143E1 from 12, comple... 46 3.7 1
(AC150285) Mus musculus BAC clone RP23-340J3 from 12, comple... 46 3.7 1
(AP009397) Solanum lycopersicum genomic DNA, chromosome 8, c... 46 3.7 1
(AY297353) Trite planiceps NADH dehydrogenase subunit 1 (ND1... 46 3.7 1
(AC151851) Takifugu rubripes, *** SEQUENCING IN PROGRESS ***... 46 3.7 1
(AC177637) Strongylocentrotus purpuratus clone R3-1020F5, WO... 46 3.7 1
(AC177540) Strongylocentrotus purpuratus clone R3-1026O17, W... 46 3.7 1
(AZ655257) 1M0530G07F Mouse 10kb plasmid UUGC1M library Mus ... 46 3.7 1
(AZ022311) RPCI-23-341K1.TV RPCI-23 Mus musculus genomic clo... 46 3.7 1
(FI204986) CccaBa014-C17TV CccABa Cajanus cajan genomic clon... 46 3.7 1
(AQ170974) HS_2202_A1_C01_MR CIT Approved Human Genomic Sper... 46 3.7 1
(CR335702) mte1-66B7RM1 BAC end, cultivar Jemalong A17 of Me... 46 3.7 1
(DB720994) Solanum lycopersicum cDNA, clone: LEFL2036H24, 5'... 46 3.7 1
(DB717864) Solanum lycopersicum cDNA, clone: LEFL2027E05, 5'... 46 3.7 1
(DB697496) Solanum lycopersicum cDNA, clone: LEFL1061AD05, 5... 46 3.7 1
(DB682179) Solanum lycopersicum cDNA, clone: LEFL1012DC04, 5... 46 3.7 1
(CV969764) PN001F1 infected potato, center of lesion 6 dpi P... 46 3.7 1
(CA354382) 626092 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 46 3.7 1
(BP911130) Solanum lycopersicum cDNA, clone: LC22CD04, 5' en... 46 3.7 1
(BP909696) Solanum lycopersicum cDNA, clone: LC16DC06, 5' en... 46 3.7 1
(GD170965) OXAX-aaa75f06.b1 Oxytricha_pSMART_OXAX Sterkiella... 46 3.7 1
(AL022170) Human DNA sequence from clone RP3-501N12 on chrom... 42 5.0 5
(CL123971) ISB1-84K7_Sp6.1 ISB1 Xenopus (Silurana) tropicali... 44 5.4 2
(AC145817) Pan troglodytes BAC clone RP43-6C4 from chromosom... 38 6.3 4
(AC201394) Strongylocentrotus purpuratus clone R3-17J8, WORK... 42 6.3 2
(AC194236) Zea mays chromosome 3 clone CH201-290E2, *** SEQU... 38 6.4 3
(AX641673) Sequence 2863 from Patent WO0101118. 34 7.4 9
(AC232449) Brassica rapa subsp. pekinensis clone KBrB008G18,... 40 8.1 6
(AL591984) Listeria monocytogenes strain EGD, complete genom... 34 8.3 8

>(BJ345899) Dictyostelium discoideum cDNA clone:dda29n09, 3' end,
single read.
Length = 681

Score = 1174 bits (592), Expect(3) = 0.0
Identities = 592/592 (100%)
Strand = Plus / Minus


Query: 686 gacaaaatcatacgcacctattggtgaaaatggtataccacgtaccgtattaactcatta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gacaaaatcatacgcacctattggtgaaaatggtataccacgtaccgtattaactcatta 622


Query: 746 tccaatggcttacaatgttgaagatagtggtttaccagtgattgatcaaacaggtgtacc 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccaatggcttacaatgttgaagatagtggtttaccagtgattgatcaaacaggtgtacc 562


Query: 806 aagattatgtaaaggtgaattcaattctcgtggtatcatcaccttcaattcattcatcct 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagattatgtaaaggtgaattcaattctcgtggtatcatcaccttcaattcattcatcct 502


Query: 866 aaaggcaacaactaagcctgccgaatgtccttacattgccgctggtttctttttcacctc 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggcaacaactaagcctgccgaatgtccttacattgccgctggtttctttttcacctc 442


Query: 926 tggtgaagcaattaaattggtaccatttgatcctcatctttcaaatctattcgaaggtga 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtgaagcaattaaattggtaccatttgatcctcatctttcaaatctattcgaaggtga 382


Query: 986 agaaattctatacagtgttagaatgtattcagctggatttagattctttgctccaactct 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaattctatacagtgttagaatgtattcagctggatttagattctttgctccaactct 322


Query: 1046 caacgtttgttttcactattactctcgtccaaaatctccaaaattctgggaagataataa 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacgtttgttttcactattactctcgtccaaaatctccaaaattctgggaagataataa 262


Query: 1106 acaatactatttagatatgcaaaaatcggttgaacgtttaaaatacatcttacgttggcc 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatactatttagatatgcaaaaatcggttgaacgtttaaaatacatcttacgttggcc 202


Query: 1166 tttagagaatactcctgatctctctgaaccacaatttgctgaaatcgataaatataccat 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagagaatactcctgatctctctgaaccacaatttgctgaaatcgataaatataccat 142


Query: 1226 tgctaatacataccattttaactgaatattatcaacgttggaaaattgatgt 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 tgctaatacataccattttaactgaatattatcaacgttggaaaattgatgt 90

Score = 61.9 bits (31), Expect(3) = 0.0
Identities = 31/31 (100%)
Strand = Plus / Minus


Query: 1280 aaaataaaaaagtacattggcatcaattttg 1310
|||||||||||||||||||||||||||||||
Sbjct: 88 aaaataaaaaagtacattggcatcaattttg 58

Score = 32.2 bits (16), Expect(3) = 0.0
Identities = 18/19 (94%)
Strand = Plus / Minus


Query: 1312 gatcaacaacctccacaag 1330
||||| |||||||||||||
Sbjct: 57 gatcancaacctccacaag 39

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,540,491,565
Number of extensions: 91633373
Number of successful extensions: 7052404
Number of sequences better than 10.0: 61
Length of query: 1431
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 1407
Effective length of database: 99,340,224,878
Effective search space: 139771696403346
Effective search space used: 139771696403346
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.14
Homology vs Protein
Query= Contig-U01121-1 (Contig-U01121-1Q) /CSM_Contig/Contig-U01121-1Q.Seq.d
(1431 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AF509501_1(AF509501|pid:none) Dictyostelium discoideum putative ... 408 0.0
FJ168556_15(FJ168556|pid:none) Bodo saltans clone fosmid 93E01, ... 122 5e-35
CP000078_25(CP000078|pid:none) Leishmania major strain Friedlin ... 101 3e-29
AM502220_71(AM502220|pid:none) Leishmania infantum chromosome 2. 101 1e-28
AC008031_11(AC008031|pid:none) Trypanosoma brucei chromosome 2 c... 94 1e-27
CP000720_1332(CP000720|pid:none) Yersinia pseudotuberculosis IP ... 74 2e-25
BX936398_2674(BX936398|pid:none) Yersinia pseudotuberculosis IP3... 74 2e-25
(Q8T1C6) RecName: Full=[Skp1-protein]-hydroxyproline N-acetylglu... 76 2e-23
AM286415_2559(AM286415|pid:none) Yersinia enterocolitica subsp. ... 67 1e-22
CP000393_1659(CP000393|pid:none) Trichodesmium erythraeum IMS101... 74 2e-20
CP000110_1790(CP000110|pid:none) Synechococcus sp. CC9605, compl... 71 2e-19
AM494954_113(AM494954|pid:none) Leishmania braziliensis chromoso... 82 3e-19
AM502235_115(AM502235|pid:none) Leishmania infantum chromosome 17. 84 4e-19
AC091655_22(AC091655|pid:none) Trypanosoma brucei chromosome 5 c... 82 7e-19
CP000850_4639(CP000850|pid:none) Salinispora arenicola CNS-205, ... 74 4e-17
EU599318_1(EU599318|pid:none) Trypanosoma cruzi strain CL Brener... 92 6e-17
CP000125_1614(CP000125|pid:none) Burkholderia pseudomallei 1710b... 57 1e-13
BX571966_110(BX571966|pid:none) Burkholderia pseudomallei strain... 57 2e-13
CP001025_2989(CP001025|pid:none) Burkholderia ambifaria MC40-6 c... 45 6e-09
AY372453_30(AY372453|pid:none) Uncultured marine proteobacterium... 64 2e-08
CP000085_132(CP000085|pid:none) Burkholderia thailandensis E264 ... 57 2e-06
FJ168556_17(FJ168556|pid:none) Bodo saltans clone fosmid 93E01, ... 55 5e-06
CP000804_134(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 37 1.8
CP001324_459(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 35 8.8
CP000139_376(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ... 35 8.8

>AF509501_1(AF509501|pid:none) Dictyostelium discoideum putative
polypeptide GlcNAc-transferase catalytic region (cis4c)
gene, partial cds.
Length = 380

Score = 408 bits (1049), Expect(3) = 0.0
Identities = 194/194 (100%), Positives = 194/194 (100%)
Frame = +3

Query: 654 WDSLIINDLWLTKSYAPIGENGIPRTVLTHYPMAYNVEDSGLPVIDQTGVPRLCKGEFNS 833
WDSLIINDLWLTKSYAPIGENGIPRTVLTHYPMAYNVEDSGLPVIDQTGVPRLCKGEFNS
Sbjct: 155 WDSLIINDLWLTKSYAPIGENGIPRTVLTHYPMAYNVEDSGLPVIDQTGVPRLCKGEFNS 214

Query: 834 RGIITFNSFILKATTKPAECPYIAAGFFFTSGEAIKLVPFDPHLSNLFEGEEILYSVRMY 1013
RGIITFNSFILKATTKPAECPYIAAGFFFTSGEAIKLVPFDPHLSNLFEGEEILYSVRMY
Sbjct: 215 RGIITFNSFILKATTKPAECPYIAAGFFFTSGEAIKLVPFDPHLSNLFEGEEILYSVRMY 274

Query: 1014 SAGFRFFAPTLNVCFHYYSRPKSPKFWEDNKQYYLDMQKSVERLKYILRWPLENTPDLSE 1193
SAGFRFFAPTLNVCFHYYSRPKSPKFWEDNKQYYLDMQKSVERLKYILRWPLENTPDLSE
Sbjct: 275 SAGFRFFAPTLNVCFHYYSRPKSPKFWEDNKQYYLDMQKSVERLKYILRWPLENTPDLSE 334

Query: 1194 PQFAEIDKYTIANT 1235
PQFAEIDKYTIANT
Sbjct: 335 PQFAEIDKYTIANT 348

Score = 266 bits (681), Expect(3) = 0.0
Identities = 133/152 (87%), Positives = 133/152 (87%)
Frame = +2

Query: 185 MNYYFRIDSKLTERDXXXXXXXXXXXXXXXXXXXEEIDPTIFVSLAAYRDVFCSDTINYI 364
MNYYFRIDSKLTERD EEIDPTIFVSLAAYRDVFCSDTINYI
Sbjct: 1 MNYYFRIDSKLTERDVKNSVNGGISGGINRNVVGEEIDPTIFVSLAAYRDVFCSDTINYI 60

Query: 365 FNHANRPEKIFIGIVDQGSEFLEEDPNQDPSFPNSYCYRGLKVAPELIQSNVRRIALTVA 544
FNHANRPEKIFIGIVDQGSEFLEEDPNQDPSFPNSYCYRGLKVAPELIQSNVRRIALTVA
Sbjct: 61 FNHANRPEKIFIGIVDQGSEFLEEDPNQDPSFPNSYCYRGLKVAPELIQSNVRRIALTVA 120

Query: 545 QSKGPTLARYYATTLYNNETYFMQVDSHLRFI 640
QSKGPTLARYYATTLYNNETYFMQVDSHLRFI
Sbjct: 121 QSKGPTLARYYATTLYNNETYFMQVDSHLRFI 152

Score = 77.4 bits (189), Expect(3) = 0.0
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = +1

Query: 1237 TILTEYYQRWKIDVENKKVHWHQFCDQQPPQE 1332
TILTEYYQRWKIDVENKKVHWHQFCDQQPPQE
Sbjct: 349 TILTEYYQRWKIDVENKKVHWHQFCDQQPPQE 380

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,969,922,246
Number of extensions: 38360051
Number of successful extensions: 97186
Number of sequences better than 10.0: 25
Number of HSP's gapped: 97108
Number of HSP's successfully gapped: 54
Length of query: 477
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 345
Effective length of database: 623,955,076
Effective search space: 215264501220
Effective search space used: 215264501220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 1.00 gvh: 0.32 alm: 0.22 top: 0.33 tms: 0.07 mit: 0.33 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: nuclear
20.0 %: cytoplasmic
16.0 %: endoplasmic reticulum
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: peroxisomal
4.0 %: vesicles of secretory system

>> prediction for Contig-U01121-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 7
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0