Contig-U01121-1 |
Contig ID |
Contig-U01121-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1421 |
Chromosome number (1..6, M) |
6 |
Chromosome length |
3595308 |
Start point |
51726 |
End point |
50302 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
11 |
Number of EST |
13 |
Link to clone list |
U01121 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6. 7 |
Homology vs CSM-cDNA |
|
dna update |
2009. 4.23 |
Homology vs DNA |
Query= Contig-U01121-1 (Contig-U01121-1Q) /CSM_Contig/Contig-U01121-1Q.Seq.d (1431 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ345899) Dictyostelium discoideum cDNA clone:dda29n09, 3' ... 1174 0.0 3 (AF509501) Dictyostelium discoideum putative polypeptide Glc... 1154 0.0 3 (BJ400241) Dictyostelium discoideum cDNA clone:dds9l08, 3' e... 1154 0.0 4 (AF233612) Dictyostelium discoideum putative phosphatidylino... 1106 0.0 2 (BJ347573) Dictyostelium discoideum cDNA clone:dda27b15, 3' ... 1082 0.0 2 (BJ343662) Dictyostelium discoideum cDNA clone:dda16d20, 3' ... 1074 0.0 2 (BJ347149) Dictyostelium discoideum cDNA clone:dda26c08, 3' ... 1057 0.0 3 (AU038975) Dictyostelium discoideum slug cDNA, clone SSM226. 934 0.0 2 (AU034901) Dictyostelium discoideum slug cDNA, clone SLE662. 896 0.0 3 (AU060742) Dictyostelium discoideum slug cDNA, clone SLB326. 1039 0.0 1 (AU060997) Dictyostelium discoideum slug cDNA, clone SLC558. 1035 0.0 1 (AU052946) Dictyostelium discoideum slug cDNA, clone SLF365. 666 0.0 2 (AU052815) Dictyostelium discoideum slug cDNA, clone SLF147. 573 0.0 2 (AU034559) Dictyostelium discoideum slug cDNA, clone SLC474. 613 0.0 2 (AU033696) Dictyostelium discoideum slug cDNA, clone SLB326. 317 e-134 3 (AU060413) Dictyostelium discoideum slug cDNA, clone SLJ654. 347 3e-93 2 (AU074839) Dictyostelium discoideum slug cDNA, clone SSM226. 264 9e-66 1 (ER285002) 1092343555578 Global-Ocean-Sampling_GS-34-01-01-1... 44 0.092 2 (AB304075) Vigna marina chloroplast DNA, tRNA-Leu and trnL-F... 50 0.24 1 (CT797456) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.24 1 (AC168482) Strongylocentrotus purpuratus clone R3-3117M3, WO... 50 0.24 1 (AC128711) Homo sapiens 3 BAC RP11-70N22 (Roswell Park Cance... 48 0.50 6 (BV530403) G591P616633FC4.T0 Clint Pan troglodytes verus STS... 48 0.95 1 (FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 48 0.95 1 (AC022058) Homo sapiens chromosome 8 clone RP11-482M5 map 8,... 48 0.95 1 (CP000612) Desulfotomaculum reducens MI-1, complete genome. 48 0.95 1 (AC096717) Homo sapiens BAC clone RP11-10O3 from 4, complete... 40 1.6 8 (DX532281) GH_MBb0044O22f GH_MBb Gossypium hirsutum genomic ... 36 1.8 2 (AC173841) Strongylocentrotus purpuratus clone R3-3081I1, WO... 42 3.4 4 (BX511115) Zebrafish DNA sequence from clone CH211-101B18 in... 46 3.7 1 (AL929072) Zebrafish DNA sequence from clone CH211-140B8. 46 3.7 1 (AC154684) Mus musculus BAC clone RP23-143E1 from 12, comple... 46 3.7 1 (AC150285) Mus musculus BAC clone RP23-340J3 from 12, comple... 46 3.7 1 (AP009397) Solanum lycopersicum genomic DNA, chromosome 8, c... 46 3.7 1 (AY297353) Trite planiceps NADH dehydrogenase subunit 1 (ND1... 46 3.7 1 (AC151851) Takifugu rubripes, *** SEQUENCING IN PROGRESS ***... 46 3.7 1 (AC177637) Strongylocentrotus purpuratus clone R3-1020F5, WO... 46 3.7 1 (AC177540) Strongylocentrotus purpuratus clone R3-1026O17, W... 46 3.7 1 (AZ655257) 1M0530G07F Mouse 10kb plasmid UUGC1M library Mus ... 46 3.7 1 (AZ022311) RPCI-23-341K1.TV RPCI-23 Mus musculus genomic clo... 46 3.7 1 (FI204986) CccaBa014-C17TV CccABa Cajanus cajan genomic clon... 46 3.7 1 (AQ170974) HS_2202_A1_C01_MR CIT Approved Human Genomic Sper... 46 3.7 1 (CR335702) mte1-66B7RM1 BAC end, cultivar Jemalong A17 of Me... 46 3.7 1 (DB720994) Solanum lycopersicum cDNA, clone: LEFL2036H24, 5'... 46 3.7 1 (DB717864) Solanum lycopersicum cDNA, clone: LEFL2027E05, 5'... 46 3.7 1 (DB697496) Solanum lycopersicum cDNA, clone: LEFL1061AD05, 5... 46 3.7 1 (DB682179) Solanum lycopersicum cDNA, clone: LEFL1012DC04, 5... 46 3.7 1 (CV969764) PN001F1 infected potato, center of lesion 6 dpi P... 46 3.7 1 (CA354382) 626092 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 46 3.7 1 (BP911130) Solanum lycopersicum cDNA, clone: LC22CD04, 5' en... 46 3.7 1 (BP909696) Solanum lycopersicum cDNA, clone: LC16DC06, 5' en... 46 3.7 1 (GD170965) OXAX-aaa75f06.b1 Oxytricha_pSMART_OXAX Sterkiella... 46 3.7 1 (AL022170) Human DNA sequence from clone RP3-501N12 on chrom... 42 5.0 5 (CL123971) ISB1-84K7_Sp6.1 ISB1 Xenopus (Silurana) tropicali... 44 5.4 2 (AC145817) Pan troglodytes BAC clone RP43-6C4 from chromosom... 38 6.3 4 (AC201394) Strongylocentrotus purpuratus clone R3-17J8, WORK... 42 6.3 2 (AC194236) Zea mays chromosome 3 clone CH201-290E2, *** SEQU... 38 6.4 3 (AX641673) Sequence 2863 from Patent WO0101118. 34 7.4 9 (AC232449) Brassica rapa subsp. pekinensis clone KBrB008G18,... 40 8.1 6 (AL591984) Listeria monocytogenes strain EGD, complete genom... 34 8.3 8
>(BJ345899) Dictyostelium discoideum cDNA clone:dda29n09, 3' end, single read. Length = 681
Score = 1174 bits (592), Expect(3) = 0.0 Identities = 592/592 (100%) Strand = Plus / Minus
Query: 686 gacaaaatcatacgcacctattggtgaaaatggtataccacgtaccgtattaactcatta 745 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 681 gacaaaatcatacgcacctattggtgaaaatggtataccacgtaccgtattaactcatta 622
Query: 746 tccaatggcttacaatgttgaagatagtggtttaccagtgattgatcaaacaggtgtacc 805 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 tccaatggcttacaatgttgaagatagtggtttaccagtgattgatcaaacaggtgtacc 562
Query: 806 aagattatgtaaaggtgaattcaattctcgtggtatcatcaccttcaattcattcatcct 865 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 561 aagattatgtaaaggtgaattcaattctcgtggtatcatcaccttcaattcattcatcct 502
Query: 866 aaaggcaacaactaagcctgccgaatgtccttacattgccgctggtttctttttcacctc 925 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 501 aaaggcaacaactaagcctgccgaatgtccttacattgccgctggtttctttttcacctc 442
Query: 926 tggtgaagcaattaaattggtaccatttgatcctcatctttcaaatctattcgaaggtga 985 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 441 tggtgaagcaattaaattggtaccatttgatcctcatctttcaaatctattcgaaggtga 382
Query: 986 agaaattctatacagtgttagaatgtattcagctggatttagattctttgctccaactct 1045 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 381 agaaattctatacagtgttagaatgtattcagctggatttagattctttgctccaactct 322
Query: 1046 caacgtttgttttcactattactctcgtccaaaatctccaaaattctgggaagataataa 1105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 321 caacgtttgttttcactattactctcgtccaaaatctccaaaattctgggaagataataa 262
Query: 1106 acaatactatttagatatgcaaaaatcggttgaacgtttaaaatacatcttacgttggcc 1165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 261 acaatactatttagatatgcaaaaatcggttgaacgtttaaaatacatcttacgttggcc 202
Query: 1166 tttagagaatactcctgatctctctgaaccacaatttgctgaaatcgataaatataccat 1225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 201 tttagagaatactcctgatctctctgaaccacaatttgctgaaatcgataaatataccat 142
Query: 1226 tgctaatacataccattttaactgaatattatcaacgttggaaaattgatgt 1277 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 141 tgctaatacataccattttaactgaatattatcaacgttggaaaattgatgt 90
Score = 61.9 bits (31), Expect(3) = 0.0 Identities = 31/31 (100%) Strand = Plus / Minus
Query: 1280 aaaataaaaaagtacattggcatcaattttg 1310 ||||||||||||||||||||||||||||||| Sbjct: 88 aaaataaaaaagtacattggcatcaattttg 58
Score = 32.2 bits (16), Expect(3) = 0.0 Identities = 18/19 (94%) Strand = Plus / Minus
Query: 1312 gatcaacaacctccacaag 1330 ||||| ||||||||||||| Sbjct: 57 gatcancaacctccacaag 39
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 1,540,491,565 Number of extensions: 91633373 Number of successful extensions: 7052404 Number of sequences better than 10.0: 61 Length of query: 1431 Length of database: 101,790,757,118 Length adjustment: 24 Effective length of query: 1407 Effective length of database: 99,340,224,878 Effective search space: 139771696403346 Effective search space used: 139771696403346 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.14 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
2 |
SL (DIR, L) |
7 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |