Contig-U01127-1
Contig ID Contig-U01127-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01127-1 (Contig-U01127-1Q) /CSM_Contig/Contig-U01127-1Q.Seq.d
ATTTATTAACACACAAACAATAAAACACACTGGGATTATCATCATTATCA
CTATCATTATTATTATTATTATTATTATAATTGTTTTTTTATTTATTAAT
AGAATTTGACAACAATGAAAATAAAATTAAAAATAAATGAATGGATTTAG
AAAACTATTTCTATTATTATTTTTAATTATCAATATTATTATTAAAATAA
AAATTACAAATAGTTTAACAGGATGTGAATTATTATCACTAGATCTATGT
CTATCAGCATATCCAATGTGTATGGCATTAATATTAACAAGTTGTTGTCC
TGGTCAATCCCCACTATGCTTAGAAGTTGATACTGTTATTAATTATCTAA
CAAATAAAAAACAAAATATTCAAAATTGTCTTAGAAATTTAAATAATGGA
ATTTTATATGAATTATGGGGTGATATGGATGAAATTCCTGGTTATGAAAT
AATACCAATACCAAATATAACTTGTTTAAATTTAGGTTGTGAAAATAAAG
GATTTAGTTGTAAATATCAAAGTGTTGCAAGTTGTAAAGATTCTCAATCA
TTATGTTGTAAACCAATACCAGTTTGTACCAATT

Gap no gap
Contig length 584
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U01127
List of clone(s)

est1=SLB419F,1,585
Translated Amino Acid sequence
fintqtikhtgiiiiitiiiiiiiiiivflfinri*qq*k*n*k*MNGFRKLFLLLFLII
NIIIKIKITNSLTGCELLSLDLCLSAYPMCMALILTSCCPGQSPLCLEVDTVINYLTNKK
QNIQNCLRNLNNGILYELWGDMDEIPGYEIIPIPNITCLNLGCENKGFSCKYQSVASCKD
SQSLCCKPIPVCTN


Translated Amino Acid sequence (All Frames)
Frame A:
iy*htnnkthwdyhhyhyhyyyyyyyncffiy**nlttmkiklkinewi*ktisiiifny
qyyy*nknyk*fnrm*iiitrsmsisisnvygininkllswsiptmlrs*ycy*lsnk*k
tkyskls*kfk*wnfi*img*yg*nswl*nntntkynlfkfrl*k*ri*l*iskcckl*r
fsiiml*tntslyq


Frame B:
fintqtikhtgiiiiitiiiiiiiiiivflfinri*qq*k*n*k*MNGFRKLFLLLFLII
NIIIKIKITNSLTGCELLSLDLCLSAYPMCMALILTSCCPGQSPLCLEVDTVINYLTNKK
QNIQNCLRNLNNGILYELWGDMDEIPGYEIIPIPNITCLNLGCENKGFSCKYQSVASCKD
SQSLCCKPIPVCTN


Frame C:
llthkq*ntlglsslslslllllll*lffylliefdnnenkiknk*mdlenyfyyyf*ls
illlk*klqiv*qdvnyyh*iyvyqhiqcvwh*y*qvvvlvnphya*klilllii*qikn
kifkivlei*imefymnygviwmkflvmk*yqyqi*lv*i*vvkikdlvvnikvlqvvki
lnhyvvnqyqfvpi


own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01127-1 (Contig-U01127-1Q)
/CSM_Contig/Contig-U01127-1Q.Seq.d
(584 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01127-1 (Contig-U01127-1Q) /CSM_Contig/Conti... 749 0.0
Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U09507-1 (Contig-U09507-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U00542-1 (Contig-U00542-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U12981-1 (Contig-U12981-1Q) /CSM_Contig/Conti... 36 0.057
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti... 36 0.057
Contig-U11098-1 (Contig-U11098-1Q) /CSM_Contig/Conti... 36 0.057
Contig-U10554-1 (Contig-U10554-1Q) /CSM_Contig/Conti... 36 0.057
Contig-U07993-1 (Contig-U07993-1Q) /CSM_Contig/Conti... 36 0.057
Contig-U05614-1 (Contig-U05614-1Q) /CSM_Contig/Conti... 36 0.057

>Contig-U01127-1 (Contig-U01127-1Q) /CSM_Contig/Contig-U01127-1Q.Seq.d
Length = 584

Score = 749 bits (378), Expect = 0.0
Identities = 378/378 (100%)
Strand = Plus / Plus


Query: 207 caaatagtttaacaggatgtgaattattatcactagatctatgtctatcagcatatccaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 caaatagtttaacaggatgtgaattattatcactagatctatgtctatcagcatatccaa 266


Query: 267 tgtgtatggcattaatattaacaagttgttgtcctggtcaatccccactatgcttagaag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgtgtatggcattaatattaacaagttgttgtcctggtcaatccccactatgcttagaag 326


Query: 327 ttgatactgttattaattatctaacaaataaaaaacaaaatattcaaaattgtcttagaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ttgatactgttattaattatctaacaaataaaaaacaaaatattcaaaattgtcttagaa 386


Query: 387 atttaaataatggaattttatatgaattatggggtgatatggatgaaattcctggttatg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 atttaaataatggaattttatatgaattatggggtgatatggatgaaattcctggttatg 446


Query: 447 aaataataccaataccaaatataacttgtttaaatttaggttgtgaaaataaaggattta 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aaataataccaataccaaatataacttgtttaaatttaggttgtgaaaataaaggattta 506


Query: 507 gttgtaaatatcaaagtgttgcaagttgtaaagattctcaatcattatgttgtaaaccaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gttgtaaatatcaaagtgttgcaagttgtaaagattctcaatcattatgttgtaaaccaa 566


Query: 567 taccagtttgtaccaatt 584
||||||||||||||||||
Sbjct: 567 taccagtttgtaccaatt 584


Score = 65.9 bits (33), Expect = 6e-11
Identities = 33/33 (100%)
Strand = Plus / Plus


Query: 1 atttattaacacacaaacaataaaacacactgg 33
|||||||||||||||||||||||||||||||||
Sbjct: 1 atttattaacacacaaacaataaaacacactgg 33


Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus


Query: 91 atttattaatagaatttgacaacaatg 117
|||||||||||||||||||||||||||
Sbjct: 91 atttattaatagaatttgacaacaatg 117


Score = 32.2 bits (16), Expect = 0.89
Identities = 16/16 (100%)
Strand = Plus / Plus


Query: 139 gaatggatttagaaaa 154
||||||||||||||||
Sbjct: 139 gaatggatttagaaaa 154


>Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Contig-U11697-1Q.Seq.d
Length = 4364

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus


Query: 444 atgaaataataccaataccaa 464
|||||||||||||||||||||
Sbjct: 1407 atgaaataataccaataccaa 1387


>Contig-U09507-1 (Contig-U09507-1Q) /CSM_Contig/Contig-U09507-1Q.Seq.d
Length = 951

Score = 38.2 bits (19), Expect = 0.014
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 336 ttattaattatctaacaaataaa 358
||||||| |||||||||||||||
Sbjct: 6 ttattaaatatctaacaaataaa 28


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,953
Number of Sequences: 8361
Number of extensions: 10953
Number of successful extensions: 1334
Number of sequences better than 10.0: 152
length of query: 584
length of database: 7,895,291
effective HSP length: 16
effective length of query: 568
effective length of database: 7,761,515
effective search space: 4408540520
effective search space used: 4408540520
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.23
Homology vs DNA
Query= Contig-U01127-1 (Contig-U01127-1Q) /CSM_Contig/Contig-U01127-1Q.Seq.d
(584 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU060768) Dictyostelium discoideum slug cDNA, clone SLB419. 726 0.0 3
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 561 0.0 4
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 82 5e-21 6
(BJ327852) Dictyostelium discoideum cDNA clone:dda22b05, 5' ... 36 0.009 3
(CW915509) RPCI42_159E3.TV RPCI-42 Bos taurus genomic clone ... 42 0.18 2
(BW008309) Ciona intestinalis cDNA, clone:rcibd032o22, 3' en... 40 0.18 2
(FB571360) Sequence 227 from Patent EP1865317. 48 0.38 1
(FB571304) Sequence 171 from Patent EP1865317. 48 0.38 1
(DH198209) Oryzias latipes Fosmid clone:GOLWFno488_g10, forw... 48 0.38 1
(CP000867) Methanococcus maripaludis C6, complete genome. 48 0.38 1
(AC155817) Mus musculus BAC clone RP23-473M8 from chromosome... 42 0.49 2
(AM659255) Entamoeba moshkovskii FIC GSS, clone mosh087h12.q1k. 36 0.70 2
(AF165818) Guillardia theta nucleomorph chromosome 1, comple... 36 0.80 2
(AM651700) Entamoeba moshkovskii FIC GSS, clone mosh101b09.p1k. 36 0.86 2
(AX344672) Sequence 97 from Patent WO0200927. 38 0.98 3
(EJ941264) 1093018867043 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.0 2
(EJ957807) 1093018981962 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.0 2
(AC223587) Bos taurus clone CH240-464L1, WORKING DRAFT SEQUE... 42 1.2 3
(CU424490) Medicago truncatula chromosome 5 clone mth2-95h16... 36 1.3 5
(AC162074) Bos taurus clone CH240-111I9, WORKING DRAFT SEQUE... 42 1.3 3
(BX547933) Zebrafish DNA sequence from clone DKEY-87L9 in li... 46 1.5 1
(AY523504) Eleusine kigeziensis clone KH2506N tRNA-Thr gene,... 46 1.5 1
(AM446487) Vitis vinifera contig VV78X261003.2, whole genome... 46 1.5 1
(AC074276) Homo sapiens 3 BAC RP11-113A11 (Roswell Park Canc... 46 1.5 1
(AC073452) Homo sapiens chromosome 3 clone RP11-804J11 map 3... 46 1.5 1
(BX296529) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.5 1
(ER960249) CH260-111I03_T7 CHORI-260 Meleagris gallopavo gen... 46 1.5 1
(AV368584) Mus musculus 14 days embryo female mammary gland ... 46 1.5 1
(FF298840) 279325556 Pea aphid whole body normalized full le... 46 1.5 1
(EX644857) 256670965 Pea aphid whole body normalized full le... 46 1.5 1
(AC011421) Homo sapiens chromosome 5 clone CTD-2303O5, compl... 36 2.2 5
(AC204811) Lemur catta clone LB2-263K22, WORKING DRAFT SEQUE... 36 2.3 4
(AC130172) Rattus norvegicus clone CH230-39I11, WORKING DRAF... 40 2.6 2
(AC148346) Medicago truncatula clone mth2-25m19, complete se... 36 2.7 3
(BD452698) Diagnosis of Diseases Associated with tumor suppr... 32 3.5 2
(AX251177) Sequence 145 from Patent WO0168912. 32 3.5 2
(CZ935197) 254310 Tomato EcoRI BAC Library Solanum lycopersi... 32 3.9 2
(CZ935198) 259114 Tomato EcoRI BAC Library Solanum lycopersi... 32 3.9 2
(AZ525111) 240PbC12 Pb MBN #21 Plasmodium berghei genomic 3'... 34 3.9 2
(AC179001) Strongylocentrotus purpuratus clone R3-1108M17, W... 36 4.5 4
(AC083907) Homo sapiens chromosome 3 clone RP11-632M22, WORK... 40 4.9 2
(CU914452) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 5.6 3
(CR388150) Zebrafish DNA sequence from clone DKEY-115A2 in l... 44 5.9 1
(AC186837) Gallus gallus BAC clone CH261-79E12 from chromoso... 44 5.9 1
(AC147044) Mus musculus BAC clone RP23-106B19 from chromosom... 44 5.9 1
(AC123534) Mus musculus BAC clone RP23-356I5 from chromosome... 44 5.9 1
(AC114916) Mus musculus BAC clone RP23-68E10 from 15, comple... 44 5.9 1
(DQ913566) Pentameris thuarii isolate 5456 trnT-trnL interge... 44 5.9 1
(AM435679) Vitis vinifera contig VV78X268665.10, whole genom... 44 5.9 1
(AM430380) Vitis vinifera contig VV78X215861.4, whole genome... 44 5.9 1
(AE014298) Drosophila melanogaster chromosome X, complete se... 44 5.9 1
(AC008334) Drosophila melanogaster clone BACR08K05, complete... 44 5.9 1
(AC129035) Rattus norvegicus clone CH230-250G6, *** SEQUENCI... 44 5.9 1
(AC126002) Rattus norvegicus clone CH230-27F17, WORKING DRAF... 44 5.9 1
(AC123368) Rattus norvegicus clone CH230-506E3, *** SEQUENCI... 44 5.9 1
(AC106452) Rattus norvegicus clone CH230-200L23, *** SEQUENC... 44 5.9 1
(CT573691) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.9 1
(AC233785) Zea mays chromosome 1 clone CH201-119J3; ZMMBBc01... 44 5.9 1
(AC230475) Bos taurus clone CH240-507I16, WORKING DRAFT SEQU... 44 5.9 1
(AC230023) Zea mays chromosome 1 clone CH201-251J17; ZMMBBc0... 44 5.9 1
(AC224116) Bos taurus clone CH240-449I5, WORKING DRAFT SEQUE... 44 5.9 1
(AC212410) Zea mays chromosome unknown clone CH201-538F24; Z... 44 5.9 1
(AC206224) Zea mays chromosome unknown clone CH201-502D18; Z... 44 5.9 1
(AC204628) Zea mays chromosome 9 clone CH201-245O2; ZMMBBc02... 44 5.9 1
(AC204064) Zea mays chromosome unknown clone CH201-135O17; Z... 44 5.9 1
(AC200062) Zea mays chromosome 1 clone CH201-299D9; ZMMBBc02... 44 5.9 1
(AC198120) Zea mays chromosome unknown clone CH201-464C9; ZM... 44 5.9 1
(AC195402) Zea mays chromosome unknown clone ZMMBBb-463P11; ... 44 5.9 1
(AC181192) Strongylocentrotus purpuratus clone R3-13D10, WOR... 44 5.9 1
(AC178040) Strongylocentrotus purpuratus clone R3-3055P11, W... 44 5.9 1
(AC176839) Strongylocentrotus purpuratus clone R3-3120C11, W... 44 5.9 1
(AC168822) Strongylocentrotus purpuratus clone R3-13E4, WORK... 44 5.9 1
(AC168816) Strongylocentrotus purpuratus clone R3-13G12, WOR... 44 5.9 1
(AC018132) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 5.9 1
(BH170937) SALK_003575 Arabidopsis thaliana TDNA insertion l... 44 5.9 1
(BH162679) ENTRU36TR Entamoeba histolytica Sheared DNA Entam... 44 5.9 1
(BH150119) ENTQP70TR Entamoeba histolytica Sheared DNA Entam... 44 5.9 1
(BH133758) ENTNH45TR Entamoeba histolytica Sheared DNA Entam... 44 5.9 1
(BH130818) ENTOP88TF Entamoeba histolytica Sheared DNA Entam... 44 5.9 1
(ER579773) 1093015830596 Global-Ocean-Sampling_GS-36-01-01-2... 44 5.9 1
(EK540273) 1095516054987 Global-Ocean-Sampling_GS-32-01-01-1... 44 5.9 1
(EK439914) 1095522067274 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.9 1
(EJ188060) 1092344167807 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.9 1
(ED399286) AUAC-aaz99b02.g1 Ascaris suum whole genome shotgu... 44 5.9 1
(ED136037) AUAC-aak45c09.g1 Ascaris suum whole genome shotgu... 44 5.9 1
(DX562222) GH_MBb0028J05f GH_MBb Gossypium hirsutum genomic ... 44 5.9 1
(DX560203) GH_MBb0079G18r GH_MBb Gossypium hirsutum genomic ... 44 5.9 1
(DX541864) GH_MBb0055H21f GH_MBb Gossypium hirsutum genomic ... 44 5.9 1
(DU831527) KBrS008J19R KBrS, Brassica rapa Sau3AI BAC librar... 44 5.9 1
(DU782471) ASXB434.g2 HF500_10-06-02 uncultured marine micro... 44 5.9 1
(DE913458) Macropus eugenii DNA, BAC clone: MEB1-097M07_R, 3... 44 5.9 1
(DE352709) Bombyx mori genomic DNA, BAC clone:BET_071_C15. 44 5.9 1
(DE316584) Bombyx mori genomic DNA, BAC clone:BES_610_B08. 44 5.9 1
(CW509702) ZMMBHc0001g18.f ZMMBHc Zea mays genomic clone ZMM... 44 5.9 1
(CW002316) ZMMBHh0001g17.f ZMMBHh Zea mays genomic clone ZMM... 44 5.9 1
(CW002284) ZMMBHh0001e09.f ZMMBHh Zea mays genomic clone ZMM... 44 5.9 1
(CW002238) ZMMBHh0001a01.f ZMMBHh Zea mays genomic clone ZMM... 44 5.9 1
(CW001877) ZMMBHg0002i08.r ZMMBHg Zea mays genomic clone ZMM... 44 5.9 1
(CW000821) ZMMBHg0001b15.r ZMMBHg Zea mays genomic clone ZMM... 44 5.9 1
(CW000695) ZMMBHf0014o22.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1
(CW000062) ZMMBHf0014b07.r ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1
(CL999377) ZMMBHf0013c12.r ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1
(CL999368) ZMMBHf0013c08.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1
(CL997729) ZMMBHf0010o17.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1
(CL996464) ZMMBHf0009d17.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1
(CL993359) ZMMBHf0005a24.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1
(CL991172) ZMMBHf0002c10.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1
(CL991002) ZMMBHf0001o14.r ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1
(CL990933) ZMMBHf0001n01.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1
(CL990648) ZMMBHf0001h01.r ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1
(CL990230) ZMMBHe0007o02.f ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1
(CL989536) ZMMBHe0006o21.f ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1
(CL989203) ZMMBHe0006h22.f ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1
(CL988125) ZMMBHe0005a16.f ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1
(CL987914) ZMMBHe0004m02.r ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1
(CL987910) ZMMBHe0004l24.r ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1
(CL987765) ZMMBHe0004i24.f ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1
(CL987758) ZMMBHe0004i20.r ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1
(CL987624) ZMMBHe0004g01.r ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1
(CL986991) ZMMBHe0003i06.f ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1
(CL986401) ZMMBHe0002l09.r ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1
(CL986042) ZMMBHe0002d17.r ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1
(CL984880) ZMMBHd0002k14.r ZMMBHd Zea mays genomic clone ZMM... 44 5.9 1
(CL984388) ZMMBHd0002a04.f ZMMBHd Zea mays genomic clone ZMM... 44 5.9 1
(CL984149) ZMMBHd0001k24.r ZMMBHd Zea mays genomic clone ZMM... 44 5.9 1
(CG838614) ZMMBBc0221B21f ZMMBBc (EcoRI) Zea mays subsp. may... 44 5.9 1
(CE477588) tigr-gss-dog-17000364625716 Dog Library Canis lup... 44 5.9 1
(CC157166) ig17h02.g1 WGS-ZmaysF (DH5a methyl filtered) Zea ... 44 5.9 1
(BX185635) Danio rerio genomic clone DKEY-192I5, genomic sur... 44 5.9 1
(EL596822) He_pwd_0222G10_M13R Heliconius erato pooled wing ... 44 5.9 1
(EC354770) LIVERF089526F6 POSSUM_01-POSSUM-LIVER-2KB Trichos... 44 5.9 1
(EC310816) OVARYF089639O21 POSSUM_01-POSSUM-C-OVARY-2KB Tric... 44 5.9 1
(DW854184) MSAM319715_1230_1780 LCM-dissected maize shoot ap... 44 5.9 1
(DW748848) MSAM079528_1228_1778 LCM-dissected maize shoot ap... 44 5.9 1
(AJ903981) Trichoderma asperellum EST, clone L14T53P138R01700. 44 5.9 1
(CA262317) SCEQLB2019G12.g LB2 Saccharum officinarum cDNA cl... 44 5.9 1
(BJ696898) Ptyochromis sp. 'redtail sheller' cDNA clone:no58... 44 5.9 1
(BJ693935) Ptyochromis sp. 'redtail sheller' cDNA clone:no54... 44 5.9 1
(BJ691856) Ptyochromis sp. 'redtail sheller' cDNA clone:no51... 44 5.9 1
(BJ081617) Xenopus laevis cDNA clone:XL076d03, 3' end, singl... 44 5.9 1
(BJ076721) Xenopus laevis cDNA clone:XL058i17, 3' end, singl... 44 5.9 1
(FG291907) 1108800220021 New World Screwworm Egg 9261 ESTs C... 44 5.9 1
(FG291539) 1108793348396 New World Screwworm Egg 9261 ESTs C... 44 5.9 1
(FG286660) 1108770723740 New World Screwworm Egg 9261 ESTs C... 44 5.9 1
(EW794739) G893P523RI17.T0 Ixodes scapularis Pooled Non-infe... 44 5.9 1
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 44 5.9 1
(AM180355) Clostridium difficile 630 complete genome. 44 5.9 1
(AC200462) Rhesus Macaque BAC CH250-273K14 () complete sequ... 36 6.2 4
(Z67736) Caenorhabditis elegans Cosmid F57G12. 38 6.2 2
(AP009636) Lotus japonicus genomic DNA, clone: LjB12N13, BM1... 40 6.9 4
(CR267836) Reverse strand read from insert in 5'HPRT inserti... 36 7.1 2
(DC561424) Bombyx mori cDNA, clone:E_FL_wd--_27I12_F_0, 5' e... 36 7.3 2
(DW258141) UI-S-GG1-aay-h-09-0-UI.s1 UI-S-GG1 Euprymna scolo... 32 8.0 3
(CR769772) Zebrafish DNA sequence from clone CH211-12H2 in l... 38 8.7 4
(EI877292) CAH1-44N22TV CAA1Ba Cicer arietinum genomic clone... 40 9.1 2
(CV846222) ID0AEE14BH10RM1 ID0AEE Acyrthosiphon pisum cDNA c... 34 9.3 2
(FG661068) G1142P322RE19.T0 Anolis carolinensis pooled norma... 36 9.6 2

>(AU060768) Dictyostelium discoideum slug cDNA, clone SLB419.
Length = 585

Score = 726 bits (366), Expect(3) = 0.0
Identities = 366/366 (100%)
Strand = Plus / Plus


Query: 219 caggatgtgaattattatcactagatctatgtctatcagcatatccaatgtgtatggcat 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 caggatgtgaattattatcactagatctatgtctatcagcatatccaatgtgtatggcat 278


Query: 279 taatattaacaagttgttgtcctggtcaatccccactatgcttagaagttgatactgtta 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 taatattaacaagttgttgtcctggtcaatccccactatgcttagaagttgatactgtta 338


Query: 339 ttaattatctaacaaataaaaaacaaaatattcaaaattgtcttagaaatttaaataatg 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttaattatctaacaaataaaaaacaaaatattcaaaattgtcttagaaatttaaataatg 398


Query: 399 gaattttatatgaattatggggtgatatggatgaaattcctggttatgaaataataccaa 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaattttatatgaattatggggtgatatggatgaaattcctggttatgaaataataccaa 458


Query: 459 taccaaatataacttgtttaaatttaggttgtgaaaataaaggatttagttgtaaatatc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 taccaaatataacttgtttaaatttaggttgtgaaaataaaggatttagttgtaaatatc 518


Query: 519 aaagtgttgcaagttgtaaagattctcaatcattatgttgtaaaccaataccagtttgta 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 aaagtgttgcaagttgtaaagattctcaatcattatgttgtaaaccaataccagtttgta 578


Query: 579 ccaatt 584
||||||
Sbjct: 579 ccaatt 584

Score = 67.9 bits (34), Expect(3) = 0.0
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 1 atttattaacacacaaacaataaaacacactggg 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 atttattaacacacaaacaataaaacacactggg 34

Score = 38.2 bits (19), Expect(3) = 0.0
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 99 atagaatttgacaacaatg 117
|||||||||||||||||||
Sbjct: 99 atagaatttgacaacaatg 117

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 594,599,110
Number of extensions: 39805357
Number of successful extensions: 3478771
Number of sequences better than 10.0: 158
Length of query: 584
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 561
Effective length of database: 99,442,330,388
Effective search space: 55787147347668
Effective search space used: 55787147347668
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.14
Homology vs Protein
Query= Contig-U01127-1 (Contig-U01127-1Q) /CSM_Contig/Contig-U01127-1Q.Seq.d
(584 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC117076_49(AC117076|pid:none) Dictyostelium discoideum chromoso... 277 2e-73
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso... 158 1e-37
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 58 2e-07
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 47 3e-04
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 47 4e-04
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 44 0.003
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid... 39 0.079
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 37 0.39
U84829_1(U84829|pid:none) HIV-1 strain PC05 from USA, envelope g... 33 4.3
EU577877_1(EU577877|pid:none) HIV-1 isolate 5057_H5 from USA env... 33 4.3
EU577878_1(EU577878|pid:none) HIV-1 isolate 5057_H6 from USA env... 33 5.7
EU577867_1(EU577867|pid:none) HIV-1 isolate 5057_A6 from USA env... 33 5.7
CP001400_53(CP001400|pid:none) Sulfolobus islandicus M.14.25, co... 33 5.7
EU577876_1(EU577876|pid:none) HIV-1 isolate 5057_H10 from USA en... 33 7.4
AY586546_8(AY586546|pid:none) HIV-1 isolate Cu100 from Cuba, com... 33 7.4
CP000283_3451(CP000283|pid:none) Rhodopseudomonas palustris BisB... 33 7.4

>AC117076_49(AC117076|pid:none) Dictyostelium discoideum chromosome
2 map 3323568-3470138 strain AX4, complete sequence.
Length = 399

Score = 277 bits (708), Expect = 2e-73
Identities = 131/149 (87%), Positives = 131/149 (87%)
Frame = +2

Query: 137 MNGFRXXXXXXXXXXXXXXXXXXTNSLTGCELLSLDLCLSAYPMCMALILTSCCPGQSPL 316
MNGFR TNSLTGCELLSLDLCLSAYPMCMALILTSCCPGQSPL
Sbjct: 1 MNGFRKLFLLLFLIINIIIKIKITNSLTGCELLSLDLCLSAYPMCMALILTSCCPGQSPL 60

Query: 317 CLEVDTVINYLTNKKQNIQNCLRNLNNGILYELWGDMDEIPGYEIIPIPNITCLNLGCEN 496
CLEVDTVINYLTNKKQNIQNCLRNLNNGILYELWGDMDEIPGYEIIPIPNITCLNLGCEN
Sbjct: 61 CLEVDTVINYLTNKKQNIQNCLRNLNNGILYELWGDMDEIPGYEIIPIPNITCLNLGCEN 120

Query: 497 KGFSCKYQSVASCKDSQSLCCKPIPVCTN 583
KGFSCKYQSVASCKDSQSLCCKPIPVCTN
Sbjct: 121 KGFSCKYQSVASCKDSQSLCCKPIPVCTN 149

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 643,104,347
Number of extensions: 10119854
Number of successful extensions: 22152
Number of sequences better than 10.0: 16
Number of HSP's gapped: 22129
Number of HSP's successfully gapped: 17
Length of query: 194
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 72
Effective length of database: 656,320,666
Effective search space: 47255087952
Effective search space used: 47255087952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 1.01 gvh: 0.66 alm: 0.47 top: 0.27 tms: 0.00 mit: 0.38 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: extracellular, including cell wall
16.0 %: vacuolar
8.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: Golgi

>> prediction for Contig-U01127-1 is exc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0