Contig-U01127-1 |
Contig ID |
Contig-U01127-1 |
Contig update |
2001. 8.29 |
Contig sequence |
|
Gap |
no gap |
Contig length |
584 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U01127 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6. 7 |
Homology vs CSM-cDNA |
|
dna update |
2009. 4.23 |
Homology vs DNA |
Query= Contig-U01127-1 (Contig-U01127-1Q) /CSM_Contig/Contig-U01127-1Q.Seq.d (584 letters)
Database: ddbj_A 102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU060768) Dictyostelium discoideum slug cDNA, clone SLB419. 726 0.0 3 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 561 0.0 4 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 82 5e-21 6 (BJ327852) Dictyostelium discoideum cDNA clone:dda22b05, 5' ... 36 0.009 3 (CW915509) RPCI42_159E3.TV RPCI-42 Bos taurus genomic clone ... 42 0.18 2 (BW008309) Ciona intestinalis cDNA, clone:rcibd032o22, 3' en... 40 0.18 2 (FB571360) Sequence 227 from Patent EP1865317. 48 0.38 1 (FB571304) Sequence 171 from Patent EP1865317. 48 0.38 1 (DH198209) Oryzias latipes Fosmid clone:GOLWFno488_g10, forw... 48 0.38 1 (CP000867) Methanococcus maripaludis C6, complete genome. 48 0.38 1 (AC155817) Mus musculus BAC clone RP23-473M8 from chromosome... 42 0.49 2 (AM659255) Entamoeba moshkovskii FIC GSS, clone mosh087h12.q1k. 36 0.70 2 (AF165818) Guillardia theta nucleomorph chromosome 1, comple... 36 0.80 2 (AM651700) Entamoeba moshkovskii FIC GSS, clone mosh101b09.p1k. 36 0.86 2 (AX344672) Sequence 97 from Patent WO0200927. 38 0.98 3 (EJ941264) 1093018867043 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.0 2 (EJ957807) 1093018981962 Global-Ocean-Sampling_GS-30-02-01-1... 36 1.0 2 (AC223587) Bos taurus clone CH240-464L1, WORKING DRAFT SEQUE... 42 1.2 3 (CU424490) Medicago truncatula chromosome 5 clone mth2-95h16... 36 1.3 5 (AC162074) Bos taurus clone CH240-111I9, WORKING DRAFT SEQUE... 42 1.3 3 (BX547933) Zebrafish DNA sequence from clone DKEY-87L9 in li... 46 1.5 1 (AY523504) Eleusine kigeziensis clone KH2506N tRNA-Thr gene,... 46 1.5 1 (AM446487) Vitis vinifera contig VV78X261003.2, whole genome... 46 1.5 1 (AC074276) Homo sapiens 3 BAC RP11-113A11 (Roswell Park Canc... 46 1.5 1 (AC073452) Homo sapiens chromosome 3 clone RP11-804J11 map 3... 46 1.5 1 (BX296529) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 46 1.5 1 (ER960249) CH260-111I03_T7 CHORI-260 Meleagris gallopavo gen... 46 1.5 1 (AV368584) Mus musculus 14 days embryo female mammary gland ... 46 1.5 1 (FF298840) 279325556 Pea aphid whole body normalized full le... 46 1.5 1 (EX644857) 256670965 Pea aphid whole body normalized full le... 46 1.5 1 (AC011421) Homo sapiens chromosome 5 clone CTD-2303O5, compl... 36 2.2 5 (AC204811) Lemur catta clone LB2-263K22, WORKING DRAFT SEQUE... 36 2.3 4 (AC130172) Rattus norvegicus clone CH230-39I11, WORKING DRAF... 40 2.6 2 (AC148346) Medicago truncatula clone mth2-25m19, complete se... 36 2.7 3 (BD452698) Diagnosis of Diseases Associated with tumor suppr... 32 3.5 2 (AX251177) Sequence 145 from Patent WO0168912. 32 3.5 2 (CZ935197) 254310 Tomato EcoRI BAC Library Solanum lycopersi... 32 3.9 2 (CZ935198) 259114 Tomato EcoRI BAC Library Solanum lycopersi... 32 3.9 2 (AZ525111) 240PbC12 Pb MBN #21 Plasmodium berghei genomic 3'... 34 3.9 2 (AC179001) Strongylocentrotus purpuratus clone R3-1108M17, W... 36 4.5 4 (AC083907) Homo sapiens chromosome 3 clone RP11-632M22, WORK... 40 4.9 2 (CU914452) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 5.6 3 (CR388150) Zebrafish DNA sequence from clone DKEY-115A2 in l... 44 5.9 1 (AC186837) Gallus gallus BAC clone CH261-79E12 from chromoso... 44 5.9 1 (AC147044) Mus musculus BAC clone RP23-106B19 from chromosom... 44 5.9 1 (AC123534) Mus musculus BAC clone RP23-356I5 from chromosome... 44 5.9 1 (AC114916) Mus musculus BAC clone RP23-68E10 from 15, comple... 44 5.9 1 (DQ913566) Pentameris thuarii isolate 5456 trnT-trnL interge... 44 5.9 1 (AM435679) Vitis vinifera contig VV78X268665.10, whole genom... 44 5.9 1 (AM430380) Vitis vinifera contig VV78X215861.4, whole genome... 44 5.9 1 (AE014298) Drosophila melanogaster chromosome X, complete se... 44 5.9 1 (AC008334) Drosophila melanogaster clone BACR08K05, complete... 44 5.9 1 (AC129035) Rattus norvegicus clone CH230-250G6, *** SEQUENCI... 44 5.9 1 (AC126002) Rattus norvegicus clone CH230-27F17, WORKING DRAF... 44 5.9 1 (AC123368) Rattus norvegicus clone CH230-506E3, *** SEQUENCI... 44 5.9 1 (AC106452) Rattus norvegicus clone CH230-200L23, *** SEQUENC... 44 5.9 1 (CT573691) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 5.9 1 (AC233785) Zea mays chromosome 1 clone CH201-119J3; ZMMBBc01... 44 5.9 1 (AC230475) Bos taurus clone CH240-507I16, WORKING DRAFT SEQU... 44 5.9 1 (AC230023) Zea mays chromosome 1 clone CH201-251J17; ZMMBBc0... 44 5.9 1 (AC224116) Bos taurus clone CH240-449I5, WORKING DRAFT SEQUE... 44 5.9 1 (AC212410) Zea mays chromosome unknown clone CH201-538F24; Z... 44 5.9 1 (AC206224) Zea mays chromosome unknown clone CH201-502D18; Z... 44 5.9 1 (AC204628) Zea mays chromosome 9 clone CH201-245O2; ZMMBBc02... 44 5.9 1 (AC204064) Zea mays chromosome unknown clone CH201-135O17; Z... 44 5.9 1 (AC200062) Zea mays chromosome 1 clone CH201-299D9; ZMMBBc02... 44 5.9 1 (AC198120) Zea mays chromosome unknown clone CH201-464C9; ZM... 44 5.9 1 (AC195402) Zea mays chromosome unknown clone ZMMBBb-463P11; ... 44 5.9 1 (AC181192) Strongylocentrotus purpuratus clone R3-13D10, WOR... 44 5.9 1 (AC178040) Strongylocentrotus purpuratus clone R3-3055P11, W... 44 5.9 1 (AC176839) Strongylocentrotus purpuratus clone R3-3120C11, W... 44 5.9 1 (AC168822) Strongylocentrotus purpuratus clone R3-13E4, WORK... 44 5.9 1 (AC168816) Strongylocentrotus purpuratus clone R3-13G12, WOR... 44 5.9 1 (AC018132) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 5.9 1 (BH170937) SALK_003575 Arabidopsis thaliana TDNA insertion l... 44 5.9 1 (BH162679) ENTRU36TR Entamoeba histolytica Sheared DNA Entam... 44 5.9 1 (BH150119) ENTQP70TR Entamoeba histolytica Sheared DNA Entam... 44 5.9 1 (BH133758) ENTNH45TR Entamoeba histolytica Sheared DNA Entam... 44 5.9 1 (BH130818) ENTOP88TF Entamoeba histolytica Sheared DNA Entam... 44 5.9 1 (ER579773) 1093015830596 Global-Ocean-Sampling_GS-36-01-01-2... 44 5.9 1 (EK540273) 1095516054987 Global-Ocean-Sampling_GS-32-01-01-1... 44 5.9 1 (EK439914) 1095522067274 Global-Ocean-Sampling_GS-31-01-01-1... 44 5.9 1 (EJ188060) 1092344167807 Global-Ocean-Sampling_GS-27-01-01-1... 44 5.9 1 (ED399286) AUAC-aaz99b02.g1 Ascaris suum whole genome shotgu... 44 5.9 1 (ED136037) AUAC-aak45c09.g1 Ascaris suum whole genome shotgu... 44 5.9 1 (DX562222) GH_MBb0028J05f GH_MBb Gossypium hirsutum genomic ... 44 5.9 1 (DX560203) GH_MBb0079G18r GH_MBb Gossypium hirsutum genomic ... 44 5.9 1 (DX541864) GH_MBb0055H21f GH_MBb Gossypium hirsutum genomic ... 44 5.9 1 (DU831527) KBrS008J19R KBrS, Brassica rapa Sau3AI BAC librar... 44 5.9 1 (DU782471) ASXB434.g2 HF500_10-06-02 uncultured marine micro... 44 5.9 1 (DE913458) Macropus eugenii DNA, BAC clone: MEB1-097M07_R, 3... 44 5.9 1 (DE352709) Bombyx mori genomic DNA, BAC clone:BET_071_C15. 44 5.9 1 (DE316584) Bombyx mori genomic DNA, BAC clone:BES_610_B08. 44 5.9 1 (CW509702) ZMMBHc0001g18.f ZMMBHc Zea mays genomic clone ZMM... 44 5.9 1 (CW002316) ZMMBHh0001g17.f ZMMBHh Zea mays genomic clone ZMM... 44 5.9 1 (CW002284) ZMMBHh0001e09.f ZMMBHh Zea mays genomic clone ZMM... 44 5.9 1 (CW002238) ZMMBHh0001a01.f ZMMBHh Zea mays genomic clone ZMM... 44 5.9 1 (CW001877) ZMMBHg0002i08.r ZMMBHg Zea mays genomic clone ZMM... 44 5.9 1 (CW000821) ZMMBHg0001b15.r ZMMBHg Zea mays genomic clone ZMM... 44 5.9 1 (CW000695) ZMMBHf0014o22.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1 (CW000062) ZMMBHf0014b07.r ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1 (CL999377) ZMMBHf0013c12.r ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1 (CL999368) ZMMBHf0013c08.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1 (CL997729) ZMMBHf0010o17.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1 (CL996464) ZMMBHf0009d17.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1 (CL993359) ZMMBHf0005a24.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1 (CL991172) ZMMBHf0002c10.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1 (CL991002) ZMMBHf0001o14.r ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1 (CL990933) ZMMBHf0001n01.f ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1 (CL990648) ZMMBHf0001h01.r ZMMBHf Zea mays genomic clone ZMM... 44 5.9 1 (CL990230) ZMMBHe0007o02.f ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1 (CL989536) ZMMBHe0006o21.f ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1 (CL989203) ZMMBHe0006h22.f ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1 (CL988125) ZMMBHe0005a16.f ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1 (CL987914) ZMMBHe0004m02.r ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1 (CL987910) ZMMBHe0004l24.r ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1 (CL987765) ZMMBHe0004i24.f ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1 (CL987758) ZMMBHe0004i20.r ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1 (CL987624) ZMMBHe0004g01.r ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1 (CL986991) ZMMBHe0003i06.f ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1 (CL986401) ZMMBHe0002l09.r ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1 (CL986042) ZMMBHe0002d17.r ZMMBHe Zea mays genomic clone ZMM... 44 5.9 1 (CL984880) ZMMBHd0002k14.r ZMMBHd Zea mays genomic clone ZMM... 44 5.9 1 (CL984388) ZMMBHd0002a04.f ZMMBHd Zea mays genomic clone ZMM... 44 5.9 1 (CL984149) ZMMBHd0001k24.r ZMMBHd Zea mays genomic clone ZMM... 44 5.9 1 (CG838614) ZMMBBc0221B21f ZMMBBc (EcoRI) Zea mays subsp. may... 44 5.9 1 (CE477588) tigr-gss-dog-17000364625716 Dog Library Canis lup... 44 5.9 1 (CC157166) ig17h02.g1 WGS-ZmaysF (DH5a methyl filtered) Zea ... 44 5.9 1 (BX185635) Danio rerio genomic clone DKEY-192I5, genomic sur... 44 5.9 1 (EL596822) He_pwd_0222G10_M13R Heliconius erato pooled wing ... 44 5.9 1 (EC354770) LIVERF089526F6 POSSUM_01-POSSUM-LIVER-2KB Trichos... 44 5.9 1 (EC310816) OVARYF089639O21 POSSUM_01-POSSUM-C-OVARY-2KB Tric... 44 5.9 1 (DW854184) MSAM319715_1230_1780 LCM-dissected maize shoot ap... 44 5.9 1 (DW748848) MSAM079528_1228_1778 LCM-dissected maize shoot ap... 44 5.9 1 (AJ903981) Trichoderma asperellum EST, clone L14T53P138R01700. 44 5.9 1 (CA262317) SCEQLB2019G12.g LB2 Saccharum officinarum cDNA cl... 44 5.9 1 (BJ696898) Ptyochromis sp. 'redtail sheller' cDNA clone:no58... 44 5.9 1 (BJ693935) Ptyochromis sp. 'redtail sheller' cDNA clone:no54... 44 5.9 1 (BJ691856) Ptyochromis sp. 'redtail sheller' cDNA clone:no51... 44 5.9 1 (BJ081617) Xenopus laevis cDNA clone:XL076d03, 3' end, singl... 44 5.9 1 (BJ076721) Xenopus laevis cDNA clone:XL058i17, 3' end, singl... 44 5.9 1 (FG291907) 1108800220021 New World Screwworm Egg 9261 ESTs C... 44 5.9 1 (FG291539) 1108793348396 New World Screwworm Egg 9261 ESTs C... 44 5.9 1 (FG286660) 1108770723740 New World Screwworm Egg 9261 ESTs C... 44 5.9 1 (EW794739) G893P523RI17.T0 Ixodes scapularis Pooled Non-infe... 44 5.9 1 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 44 5.9 1 (AM180355) Clostridium difficile 630 complete genome. 44 5.9 1 (AC200462) Rhesus Macaque BAC CH250-273K14 () complete sequ... 36 6.2 4 (Z67736) Caenorhabditis elegans Cosmid F57G12. 38 6.2 2 (AP009636) Lotus japonicus genomic DNA, clone: LjB12N13, BM1... 40 6.9 4 (CR267836) Reverse strand read from insert in 5'HPRT inserti... 36 7.1 2 (DC561424) Bombyx mori cDNA, clone:E_FL_wd--_27I12_F_0, 5' e... 36 7.3 2 (DW258141) UI-S-GG1-aay-h-09-0-UI.s1 UI-S-GG1 Euprymna scolo... 32 8.0 3 (CR769772) Zebrafish DNA sequence from clone CH211-12H2 in l... 38 8.7 4 (EI877292) CAH1-44N22TV CAA1Ba Cicer arietinum genomic clone... 40 9.1 2 (CV846222) ID0AEE14BH10RM1 ID0AEE Acyrthosiphon pisum cDNA c... 34 9.3 2 (FG661068) G1142P322RE19.T0 Anolis carolinensis pooled norma... 36 9.6 2
>(AU060768) Dictyostelium discoideum slug cDNA, clone SLB419. Length = 585
Score = 726 bits (366), Expect(3) = 0.0 Identities = 366/366 (100%) Strand = Plus / Plus
Query: 219 caggatgtgaattattatcactagatctatgtctatcagcatatccaatgtgtatggcat 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 219 caggatgtgaattattatcactagatctatgtctatcagcatatccaatgtgtatggcat 278
Query: 279 taatattaacaagttgttgtcctggtcaatccccactatgcttagaagttgatactgtta 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 taatattaacaagttgttgtcctggtcaatccccactatgcttagaagttgatactgtta 338
Query: 339 ttaattatctaacaaataaaaaacaaaatattcaaaattgtcttagaaatttaaataatg 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 339 ttaattatctaacaaataaaaaacaaaatattcaaaattgtcttagaaatttaaataatg 398
Query: 399 gaattttatatgaattatggggtgatatggatgaaattcctggttatgaaataataccaa 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 399 gaattttatatgaattatggggtgatatggatgaaattcctggttatgaaataataccaa 458
Query: 459 taccaaatataacttgtttaaatttaggttgtgaaaataaaggatttagttgtaaatatc 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 459 taccaaatataacttgtttaaatttaggttgtgaaaataaaggatttagttgtaaatatc 518
Query: 519 aaagtgttgcaagttgtaaagattctcaatcattatgttgtaaaccaataccagtttgta 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 519 aaagtgttgcaagttgtaaagattctcaatcattatgttgtaaaccaataccagtttgta 578
Query: 579 ccaatt 584 |||||| Sbjct: 579 ccaatt 584
Score = 67.9 bits (34), Expect(3) = 0.0 Identities = 34/34 (100%) Strand = Plus / Plus
Query: 1 atttattaacacacaaacaataaaacacactggg 34 |||||||||||||||||||||||||||||||||| Sbjct: 1 atttattaacacacaaacaataaaacacactggg 34
Score = 38.2 bits (19), Expect(3) = 0.0 Identities = 19/19 (100%) Strand = Plus / Plus
Query: 99 atagaatttgacaacaatg 117 ||||||||||||||||||| Sbjct: 99 atagaatttgacaacaatg 117
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 102105510 Number of Hits to DB: 594,599,110 Number of extensions: 39805357 Number of successful extensions: 3478771 Number of sequences better than 10.0: 158 Length of query: 584 Length of database: 101,790,757,118 Length adjustment: 23 Effective length of query: 561 Effective length of database: 99,442,330,388 Effective search space: 55787147347668 Effective search space used: 55787147347668 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.14 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |