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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U05475-1
Contig ID Contig-U05475-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U05475-1 (Contig-U05475-1Q) /CSM_Contig/Contig-U05475-1Q.Seq.d
AAAAATTATTACAAACAAATATTTACCAAACAATGAATCCAAAAGATAAA
AGAGTTAATTTTGGTTCTATGGAACCTTTAATAAGAGATATTGGTACAGT
TTATGAATTTTATTTTGATCAAAATACATTTATAGAATCAGAAATAAAAA
CATTTTTAAAAGAATTTGAAACAAAGAGAGGAGATAGAGATTTATATTCA
CTTTCACAACAAACCATAAATGCAAATAATACAATTGTAAATATAAATAG
ATCAATTCATCAATCAAGTCAATTCCTTGAAAATATTAATAATAATTTAA
ATCAAATAAATTCAAAGTTATCAACTCAAGTTGAAAATGAATCAATTCAT
CAAGAACAAAGAAATAATGATAGATTAAATAAATTTGAATTGGAATTAGT
TGAAAAGAAATCAATTGAAGATTCATTCAATCAAAGAAAATCACAAATTG
AAAATGATTTCAATGAAAAAGCATCAGTCCTACGTGACAAATATCAAATT
GTATTATAAA
Gap no gap
Contig length 510
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5027720
End point 5028230
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U05475
List of clone(s) 

est1=SSI655F,1,511
Translated Amino Acid sequence 
KLLQTNIYQTMNPKDKRVNFGSMEPLIRDIGTVYEFYFDQNTFIESEIKTFLKEFETKRG
DRDLYSLSQQTINANNTIVNINRSIHQSSQFLENINNNLNQINSKLSTQVENESIHQEQR
NNDRLNKFELELVEKKSIEDSFNQRKSQIENDFNEKASVLRDKYQIVL*
Translated Amino Acid sequence (All Frames) 
Frame A:
knyykqiftkq*iqkikelilvlwnl**eilvqfmnfilikihl*nqk*khf*knlkqre
eieiyihfhnkp*mqiiql*i*idqfinqvnslkiliii*ik*iqsyqlklkmnqfiknk
eimid*inlnwn*lkrnqlkihsikenhklkmismkkhqsyvtniklyyk


Frame B:
kiitnkylpnneskr*ks*fwfygtfnkrywysl*ilf*skyiyrirnknifkri*nker
r*rfiftfttnhkck*ynckyk*inssiksip*ky***fksnkfkvinss*k*inssrtk
k***ik*i*igis*kein*rfiqskkitn*k*fq*ksispt*qisncii


Frame C:
KLLQTNIYQTMNPKDKRVNFGSMEPLIRDIGTVYEFYFDQNTFIESEIKTFLKEFETKRG
DRDLYSLSQQTINANNTIVNINRSIHQSSQFLENINNNLNQINSKLSTQVENESIHQEQR
NNDRLNKFELELVEKKSIEDSFNQRKSQIENDFNEKASVLRDKYQIVL*
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U05475-1 (Contig-U05475-1Q)
/CSM_Contig/Contig-U05475-1Q.Seq.d
         (510 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U05475-1 (Contig-U05475-1Q) /CSM_Contig/Conti...  1011  0.0
Contig-U12500-1 (Contig-U12500-1Q) /CSM_Contig/Conti...    42  6e-04
Contig-U13697-1 (Contig-U13697-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U09510-1 (Contig-U09510-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U12712-1 (Contig-U12712-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12561-1 (Contig-U12561-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12495-1 (Contig-U12495-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U11962-1 (Contig-U11962-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U11174-1 (Contig-U11174-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U03664-1 (Contig-U03664-1Q) /CSM_Contig/Conti...    38  0.009

>Contig-U05475-1 (Contig-U05475-1Q) /CSM_Contig/Contig-U05475-1Q.Seq.d
          Length = 510

 Score = 1011 bits (510), Expect = 0.0
 Identities = 510/510 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaattattacaaacaaatatttaccaaacaatgaatccaaaagataaaagagttaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaaattattacaaacaaatatttaccaaacaatgaatccaaaagataaaagagttaatt 60

                                                                       
Query: 61  ttggttctatggaacctttaataagagatattggtacagtttatgaattttattttgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttggttctatggaacctttaataagagatattggtacagtttatgaattttattttgatc 120

                                                                       
Query: 121 aaaatacatttatagaatcagaaataaaaacatttttaaaagaatttgaaacaaagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaatacatttatagaatcagaaataaaaacatttttaaaagaatttgaaacaaagagag 180

                                                                       
Query: 181 gagatagagatttatattcactttcacaacaaaccataaatgcaaataatacaattgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gagatagagatttatattcactttcacaacaaaccataaatgcaaataatacaattgtaa 240

                                                                       
Query: 241 atataaatagatcaattcatcaatcaagtcaattccttgaaaatattaataataatttaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atataaatagatcaattcatcaatcaagtcaattccttgaaaatattaataataatttaa 300

                                                                       
Query: 301 atcaaataaattcaaagttatcaactcaagttgaaaatgaatcaattcatcaagaacaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcaaataaattcaaagttatcaactcaagttgaaaatgaatcaattcatcaagaacaaa 360

                                                                       
Query: 361 gaaataatgatagattaaataaatttgaattggaattagttgaaaagaaatcaattgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaaataatgatagattaaataaatttgaattggaattagttgaaaagaaatcaattgaag 420

                                                                       
Query: 421 attcattcaatcaaagaaaatcacaaattgaaaatgatttcaatgaaaaagcatcagtcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attcattcaatcaaagaaaatcacaaattgaaaatgatttcaatgaaaaagcatcagtcc 480

                                         
Query: 481 tacgtgacaaatatcaaattgtattataaa 510
           ||||||||||||||||||||||||||||||
Sbjct: 481 tacgtgacaaatatcaaattgtattataaa 510


 Score = 32.2 bits (16), Expect = 0.55
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 111 tattttgatcaaaata 126
           ||||||||||||||||
Sbjct: 126 tattttgatcaaaata 111


>Contig-U12500-1 (Contig-U12500-1Q) /CSM_Contig/Contig-U12500-1Q.Seq.d
          Length = 1529

 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 282 aatattaataataatttaaat 302
           |||||||||||||||||||||
Sbjct: 681 aatattaataataatttaaat 701


>Contig-U13697-1 (Contig-U13697-1Q) /CSM_Contig/Contig-U13697-1Q.Seq.d
          Length = 467

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 288 aataataatttaaatcaaataaat 311
           ||||||||||||||| ||||||||
Sbjct: 274 aataataatttaaataaaataaat 297


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,175
Number of Sequences: 6905
Number of extensions: 17175
Number of successful extensions: 2533
Number of sequences better than 10.0: 907
length of query: 510
length of database: 5,674,871
effective HSP length: 16
effective length of query: 494
effective length of database: 5,564,391
effective search space: 2748809154
effective search space used: 2748809154
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 7.22
Homology vs DNA 
Query= Contig-U05475-1 (Contig-U05475-1Q) /CSM_Contig/Contig-U05475-1Q.Seq.d
         (510 letters)

Database: ddbj_B
           105,743,758 sequences; 104,622,809,269 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU073894) Dictyostelium discoideum slug cDNA, clone SSI655.      476   e-130  1
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    38   0.005  7
(DY626509) hh_Ab_Pinky2003_000014779 Cichlid Pinky cDNA libr...    52   0.022  1
(CU151894) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    50   0.030  5
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    44   0.063  4
(AM422018) Candidatus Phytoplasma australiense complete genome.    38   0.071  8
(CT009492) M.truncatula DNA sequence from clone MTH2-93A21 o...    34   0.072  6
(CT583721) Zebrafish DNA sequence from clone DKEY-193G10 in ...    50   0.085  1
(BX248115) Zebrafish DNA sequence from clone CH211-208K15 in...    50   0.085  1
(CU914350) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.085  1
(CU466326) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    50   0.085  1
(CT027634) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    50   0.085  1
(CT263598) Sus scrofa genomic clone CH242-229K19, genomic su...    50   0.085  1
(DW646312) CLJ380-L15.x1d-t SHGC-CLJ2 Gasterosteus aculeatus...    50   0.085  1
(DQ451873) Eleutheria dichotoma fosmid fCnox-5, complete seq...    38   0.15   3
(EK294979) 1095462344555 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.18   2
(AC109140) Mus musculus chromosome 5, clone RP23-153N23, com...    40   0.19   4
(AC231669) Solanum tuberosum chromosome 11 clone RH083G18, *...    34   0.20   2
(BX629348) Zebrafish DNA sequence from clone DKEY-4E7 in lin...    38   0.20   2
(CW641265) OA_ABa0177P11.r OA_ABa Oryza australiensis genomi...    38   0.25   2
(CW575695) OA_ABa0104A12.r OA_ABa Oryza australiensis genomi...    38   0.25   2
(GF040578) pRRL2:Newb:20080411:42302 USMARC Pig Breed SNP Di...    48   0.34   1
(AC164578) Mus musculus  BAC RP23-15E20 (Roswell Park Cancer...    48   0.34   1
(AC153817) Mus musculus  BAC RP23-11P24 (Roswell Park Cancer...    48   0.34   1
(AC087184) Mus Musculus Chromosome 3 RP23-403C5, complete se...    48   0.34   1
(AL844501) Plasmodium falciparum strain 3D7, chromosome 1.         48   0.34   1
(AC017092) Homo sapiens BAC clone RP11-510D22 from 5, comple...    48   0.34   1
(AC008513) Homo sapiens chromosome 5 clone CTC-455C23, compl...    48   0.34   1
(AC008490) Homo sapiens chromosome 5 clone CTC-426I14, compl...    48   0.34   1
(AC078946) Mus musculus strain C57BL6/J chromosome 6 clone R...    48   0.34   1
(AC078932) Mus musculus strain C57BL6/J chromosome 6 clone R...    48   0.34   1
(AC069342) Homo sapiens chromosome 3 clone RP11-808I7 map 3,...    48   0.34   1
(CU407143) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    48   0.34   1
(AC011794) Homo sapiens clone RP11-17L14, WORKING DRAFT SEQU...    48   0.34   1
(EK245634) 1095460252306 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.34   1
(EK242927) 1095460241272 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.34   1
(EK014176) 1092955217682 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.34   1
(EK011141) 1092955181620 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.34   1
(GO636706) EST_afim_evh_919644 afimevh mixed_tissue Anoplopo...    48   0.34   1
(GO636705) EST_afim_evh_918492 afimevh mixed_tissue Anoplopo...    48   0.34   1
(AL021706) Human DNA sequence from clone RP4-717L17 on chrom...    38   0.37   3
(FF243208) G809P189FF2.T0 Culex pipiens quinquefasciatus Fil...    34   0.51   3
(FF243708) G809P186FA24.T0 Culex pipiens quinquefasciatus Fi...    34   0.52   3
(CU012043) M.truncatula DNA sequence from clone MTH2-63O12 o...    34   0.65   5
(AC174471) Mus musculus BAC clone RP23-360P3 from chromosome...    32   0.71   2
(AC166166) Mus musculus BAC clone RP23-293B18 from chromosom...    32   0.72   2
(AF342999) Mus musculus axonemal dynein heavy chain 8 Dnahc8...    32   0.73   2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.76   8
(AM477079) Vitis vinifera contig VV78X084690.3, whole genome...    36   0.76   2
(AC189525) Brassica rapa subsp. pekinensis clone KBrB092D10,...    42   0.90   5
(AL935203) Zebrafish DNA sequence from clone CH211-256A21 in...    44   0.91   3
(AB455531) Vibrio parahaemolyticus genes for pathogenicity i...    42   0.92   2
(AM468258) Vitis vinifera contig VV78X169959.8, whole genome...    34   0.94   4
(CR007321) Forward strand read from insert in 5'HPRT inserti...    32   0.94   2
(CR090228) Forward strand read from insert in 5'HPRT inserti...    32   0.94   2
(AC110002) Homo sapiens chromosome 5 clone RP11-125A13, comp...    40   0.98   4
(AL354817) Human DNA sequence *** SEQUENCING IN PROGRESS ***...    36   1.0    4
(AC162563) Bos taurus clone CH240-120C9, WORKING DRAFT SEQUE...    38   1.1    6
(CP001185) Thermosipho africanus TCF52B, complete genome.          34   1.1    19
(AC131655) Mus musculus BAC clone RP23-233G16 from 8, comple...    42   1.2    3
(AL161902) Human DNA sequence from clone RP11-66B8 on chromo...    34   1.2    6
(BX470181) Zebrafish DNA sequence from clone CH211-91P22 in ...    36   1.2    4
(CP001357) Brachyspira hyodysenteriae WA1, complete genome.        36   1.2    15
(FT065147) Rattus norvegicus DNA, BAC clone: RNB2-092J04, 3'...    30   1.3    3
(AM476768) Vitis vinifera contig VV78X119479.5, whole genome...    40   1.3    2
(AL772293) Mouse DNA sequence from clone RP23-57D24 on chrom...    46   1.3    1
(AL591129) Mouse DNA sequence from clone RP23-147P4 on chrom...    46   1.3    1
(AC160061) Mus musculus 10 BAC RP24-496L10 (Roswell Park Can...    46   1.3    1
(AC159240) Mus musculus BAC clone RP24-555M20 from chromosom...    46   1.3    1
(AC153975) Mus musculus 10 BAC RP24-186L12 (Roswell Park Can...    46   1.3    1
(AC132939) Mus musculus chromosome 5, clone RP24-91I11, comp...    46   1.3    1
(GN009186) Sequence 1627 from Patent EP2014669.                    46   1.3    1
(CT737389) Pig DNA sequence from clone CH242-40A13 on chromo...    46   1.3    1
(AL360220) Human DNA sequence from clone RP11-173B15 on chro...    46   1.3    1
(AC125610) Homo sapiens 3 BAC RP11-189B7 (Roswell Park Cance...    46   1.3    1
(AC152289) Bos taurus clone CH240-3A3, WORKING DRAFT SEQUENC...    46   1.3    1
(AC098283) Rattus norvegicus clone CH230-1H11, WORKING DRAFT...    46   1.3    1
(AC068360) Homo sapiens chromosome 3 clone RP11-189B7 map 3,...    46   1.3    1
(AC067786) Homo sapiens chromosome 4 clone RP11-191O7 map 4,...    46   1.3    1
(BX323988) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.3    1
(AC199649) Myotis lucifugus clone CH235-41H2, WORKING DRAFT ...    46   1.3    1
(AC197289) Myotis lucifugus clone CH235-176D16, WORKING DRAF...    46   1.3    1
(AC166184) Bos taurus clone CH240-172B9, WORKING DRAFT SEQUE...    46   1.3    1
(AC165824) Bos taurus clone CH240-151B18, *** SEQUENCING IN ...    46   1.3    1
(AZ704811) RPCI-23-234M1.TJ RPCI-23 Mus musculus genomic clo...    46   1.3    1
(EJ412873) 1093012161393 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.3    1
(EJ341492) 1092963519587 Global-Ocean-Sampling_GS-28-01-01-1...    46   1.3    1
(DX122679) OG_ABa0150B20.f OG_ABa Oryza granulata genomic cl...    46   1.3    1
(DE878400) Macropus eugenii DNA, BAC clone: MEB1-050L17_F, 5...    46   1.3    1
(CR245215) Reverse strand read from insert in 5'HPRT inserti...    46   1.3    1
(BX991859) Reverse strand read from insert in 5'HPRT inserti...    46   1.3    1
(EC357677) IMMUNEF088892L14 POSSUM_01-C-POSSUM-IMMUNE-2KB Tr...    46   1.3    1
(EC349399) LIVERF091705C8 POSSUM_01-POSSUM-LIVER-2KB Trichos...    46   1.3    1
(EC331530) GUTF091686D9 POSSUM_01-POSSUM-GUT-2KB Trichosurus...    46   1.3    1
(EC279554) BRAINF089465G13 POSSUM_01-POSSUM-C-BRAIN-2KB Tric...    46   1.3    1
(DY607748) IMMUNEF045820P15 POSSUM_01-C-POSSUM-IMMUNE-2KB Tr...    46   1.3    1
(DY594159) KIDNEYF042327N20 POSSUM_01-POSSUM-KIDNEY-2KB Tric...    46   1.3    1
(DB871834) Lipochromis sp. 'matumbi hunter' cDNA clone:hm764...    46   1.3    1
(DB870676) Lipochromis sp. 'matumbi hunter' cDNA clone:hm750...    46   1.3    1
(DB864953) Lipochromis sp. 'matumbi hunter' cDNA clone:hm784...    46   1.3    1
(AM959082) Sparus aurata EST, clone cDN04P0006N07, 5'-end se...    46   1.3    1
(AM055469) Polyplastron multivesiculatum EST, clone Pm04_H05.      46   1.3    1
(CJ048992) Mus musculus adult male thymus cDNA, RIKEN full-l...    46   1.3    1
(BM160560) EST563083 PyBS Plasmodium yoelii yoelii cDNA clon...    46   1.3    1
(CP001047) Mycoplasma arthritidis 158L3-1, complete genome.        46   1.3    1
(CF370456) rg65e01.y1 Meloidogyne hapla female SMART pGEM Me...    32   1.3    3
(AX508855) Sequence 3550 from Patent WO0216655.                    40   1.4    2
(AC169555) Bos taurus clone CH240-225N21, WORKING DRAFT SEQU...    34   1.4    5
(AL844505) Plasmodium falciparum 3D7 chromosome 6.                 34   1.4    13
(AC090071) Homo sapiens chromosome 5 clone CTD-2538A21, comp...    40   1.4    4
(CR384092) Zebrafish DNA sequence from clone DKEY-43A9 in li...    36   1.5    6
(CU326393) Medicago truncatula chromosome 5 clone mth4-5l6, ...    38   1.7    6
(AM452250) Vitis vinifera contig VV78X051161.7, whole genome...    34   1.8    3
(AY689436) Deerpox virus W-848-83, complete genome.                40   1.8    5
(AC073342) Homo sapiens BAC clone RP11-556I13 from 7, comple...    38   1.8    5
(AC153120) Medicago truncatula clone mth2-20n3, complete seq...    40   1.9    3
(AC092438) Homo sapiens BAC clone RP11-367M19 from 4, comple...    32   2.0    6
(EY499410) CBBP4665.rev CBBP Hirudo medicinalis hermaphrodit...    40   2.0    2
(DQ185929) Gallus gallus preproglucagon (GCG) gene, complete...    40   2.0    2
(AC216598) Populus trichocarpa clone POP037-D13, complete se...    40   2.0    4
(AC216365) Solanum lycopersicum chromosome 12 clone LE_HBa-1...    32   2.1    7
(EK357573) 1095468693829 Global-Ocean-Sampling_GS-31-01-01-1...    34   2.1    3
(CP000993) Borrelia recurrentis A1, complete genome.               36   2.2    8
(FH695979) CHO_OF5130xk14r1.ab1 CHO_OF5 Nicotiana tabacum ge...    38   2.4    2
(AC010396) Homo sapiens chromosome 5 clone CTD-2095A19, WORK...    38   2.4    4
(AC134219) Rattus norvegicus clone CH230-35M8, *** SEQUENCIN...    32   2.6    2
(AC156731) Bos taurus clone CH240-39O24, WORKING DRAFT SEQUE...    34   2.6    2
(AV023025) Mus musculus 18-day embryo cDNA, partial sequence...    38   2.8    2
(BX649404) Zebrafish DNA sequence from clone CH211-285O15 in...    40   2.8    3
(CR388147) Zebrafish DNA sequence from clone DKEYP-72E1 in l...    40   2.9    5
(AL161497) Arabidopsis thaliana DNA chromosome 4, contig fra...    44   3.0    3
(BX072541) Mouse DNA sequence from clone RP23-189G9 on chrom...    32   3.0    6
(AC235231) Glycine max strain Williams 82 clone GM_WBb0026L1...    42   3.1    4
(AC124032) Rattus norvegicus clone CH230-243H23, *** SEQUENC...    38   3.2    3
(AC232485) Brassica rapa subsp. pekinensis clone KBrB043N10,...    34   3.4    6
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    34   3.4    10
(AZ541594) ENTFG36TF Entamoeba histolytica Sheared DNA Entam...    32   3.5    2
(BH164755) ENTSX35TR Entamoeba histolytica Sheared DNA Entam...    32   3.5    2
(AM625364) Entamoeba dispar GSS, clone dispar117d05.q1k.           34   3.5    2
(AC165310) Mus musculus chromosome 19 clone RP23-313A23 map ...    44   3.5    3
(CD346802) EtESTee97d09.y1 Eimeria tenella M5-6 Excised cDNA...    32   3.6    2
(BI895168) EtESTea17e10.y1 Eimeria M5-6 Merozoite stage Eime...    32   3.6    2
(CG988638) CH240_145E02.TJ CHORI-240 Bos taurus genomic clon...    34   3.6    2
(AC219292) Bos taurus clone CH240-335N5, WORKING DRAFT SEQUE...    36   3.6    5
(AC010246) Homo sapiens chromosome 5 clone CTC-369K18, WORKI...    40   3.7    4
(CN194350) rg93c06.y1 Meloidogyne hapla female SMART pGEM Me...    30   3.7    3
(AC099596) Mus musculus chromosome 15, clone RP23-26P23, com...    36   3.7    5
(AC177432) Strongylocentrotus purpuratus clone R3-55B3, WORK...    36   3.9    4
(AC006971) Homo sapiens PAC clone RP4-791C19 from 7, complet...    38   3.9    2
(AC188409) Pan troglodytes BAC clone CH251-50D12 from chromo...    38   4.0    3
(AC093889) Homo sapiens BAC clone RP11-671G14 from 7, comple...    38   4.4    6
(Z69663) Caenorhabditis elegans Cosmid K02B9.                      38   4.4    2
(AL360080) Human DNA sequence from clone RP11-483I8 on chrom...    44   4.4    3
(CT573462) Zebrafish DNA sequence from clone CH73-288I4 in l...    38   4.5    2
(AC143334) Homo sapiens chromosome 5 clone RP13-762F6, WORKI...    38   4.5    2
(AC197649) Nomascus leucogenys leucogenys clone CH271-384E21...    36   4.9    4
(AC062038) Homo sapiens chromosome 6 clone RP11-736C22, WORK...    38   4.9    2
(AC142543) Homo sapiens chromosome 5 clone RP13-530C14, WORK...    38   5.1    2
(AC144354) Homo sapiens chromosome 5 clone RP13-841G21, WORK...    38   5.1    2
(AC165123) Bos taurus clone CH240-163O20, WORKING DRAFT SEQU...    38   5.2    3
(BX324224) Zebrafish DNA sequence from clone CH211-168H21 in...    44   5.3    1
(BX004828) Zebrafish DNA sequence from clone DKEY-185M8.           44   5.3    1
(AY689437) Deerpox virus W-1170-84, complete genome.               44   5.3    1
(BV018102) S212P6920FA12.T0 CZECHII/Ei Mus musculus STS geno...    44   5.3    1
(CT010505) Mouse DNA sequence from clone RP23-99P18 on chrom...    44   5.3    1
(AL805935) Mouse DNA sequence from clone RP23-326E10 on chro...    44   5.3    1
(AL607024) Mouse DNA sequence from clone RP23-194P5 on chrom...    44   5.3    1
(AC165239) Mus musculus chromosome 19, clone RP24-73C2, comp...    44   5.3    1
(AC163644) Mus musculus BAC clone RP24-394I24 from chromosom...    44   5.3    1
(AC156555) Mus musculus chromosome 7, clone RP23-59P20, comp...    44   5.3    1
(AC152161) Mus musculus chromosome 19, clone RP23-162O21, co...    44   5.3    1
(AC151575) Mus musculus BAC clone RP24-126E1 from 19, comple...    44   5.3    1
(AC139883) Mus musculus chromosome 16, clone RP24-304O16, co...    44   5.3    1
(AC134856) Mus musculus BAC clone RP23-291B16 from 18, compl...    44   5.3    1
(AC132952) Mus musculus BAC clone RP24-175H8 from 19, comple...    44   5.3    1
(AC131109) Mus musculus BAC clone RP23-362M7 from chromosome...    44   5.3    1
(AC125098) Mus musculus BAC clone RP24-195M13 from chromosom...    44   5.3    1
(AC120237) Rattus norvegicus 1 BAC CH230-453N3 (Children's H...    44   5.3    1
(AC107662) Mus musculus chromosome 9, clone RP23-99B22, comp...    44   5.3    1
(AC102914) Mus musculus chromosome 15, clone RP24-274M4, com...    44   5.3    1
(AC093483) Mus musculus chromosome 9, clone RP23-79K5, compl...    44   5.3    1
(AC027298) Mus musculus 7 BAC RP23-266F22 (Roswell Park Canc...    44   5.3    1
(AP009779) Lotus japonicus genomic DNA, clone: LjT34L14, TM1...    44   5.3    1
(AP007150) Aspergillus oryzae RIB40 genomic DNA, SC009.            44   5.3    1
(AM477494) Vitis vinifera contig VV78X125840.10, whole genom...    44   5.3    1
(AL161496) Arabidopsis thaliana DNA chromosome 4, contig fra...    44   5.3    1
(AF071527) Arabidopsis thaliana BAC F9H3, from chromosome IV...    44   5.3    1
(AC184060) Populus trichocarpa clone Pop1-106E15, complete s...    44   5.3    1
(GC563832) Sequence 1685 from patent US 7420044.                   44   5.3    1
(CQ869600) Sequence 21 from Patent WO2004074320.                   44   5.3    1
(AR347467) Sequence 2078 from patent US 6583275.                   44   5.3    1
(CU914271) Pig DNA sequence from clone CH242-330B10 on chrom...    44   5.3    1
(AC087633) Homo sapiens chromosome 15, clone RP11-255M2, com...    44   5.3    1
(AC157820) Mus musculus chromosome 3 clone RP24-334E22 map 3...    44   5.3    1
(AC150465) Callithrix jacchus clone CH259-76B23, WORKING DRA...    44   5.3    1
(AC142065) Rattus norvegicus clone CH230-79E3, *** SEQUENCIN...    44   5.3    1
(AC127441) Rattus norvegicus clone CH230-339N3, *** SEQUENCI...    44   5.3    1
(AC110471) Rattus norvegicus clone CH230-18L12, WORKING DRAF...    44   5.3    1
(AC107086) Rattus norvegicus clone CH230-200B21, *** SEQUENC...    44   5.3    1
(AC100379) Mus musculus clone RP23-131C19, LOW-PASS SEQUENCE...    44   5.3    1
(AC100368) Mus musculus clone RP23-128O11, LOW-PASS SEQUENCE...    44   5.3    1
(AC096532) Homo sapiens chromosome 1 clone RP11-295P8, WORKI...    44   5.3    1
(CU582934) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(AC094514) Rattus norvegicus clone CH230-4K15, WORKING DRAFT...    44   5.3    1
(AC094513) Rattus norvegicus clone CH230-4K14, *** SEQUENCIN...    44   5.3    1
(AC094278) Rattus norvegicus clone CH230-3G20, *** SEQUENCIN...    44   5.3    1
(AC084802) Mus musculus strain C57BL6/J chromosome 16 clone ...    44   5.3    1
(AC026379) Mus musculus chromosome 11 clone RP23-264I3, WORK...    44   5.3    1
(CU468122) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(CU463068) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(CT998546) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   5.3    1
(AP003671) Mus musculus genomic DNA, chromosome 16q clone:RP...    44   5.3    1
(AC235606) Tupaia belangeri clone CH275-323E14, WORKING DRAF...    44   5.3    1
(AC231548) Solanum tuberosum chromosome 6 clone RHPOTKEY160K...    44   5.3    1
(AC226469) Tupaia belangeri clone CH275-558I18, WORKING DRAF...    44   5.3    1
(AC225866) Tupaia belangeri clone CH275-80E13, WORKING DRAFT...    44   5.3    1
(AC205963) Zea mays chromosome 4 clone ZMMBBb-269H8; ZMMBBb0...    44   5.3    1
(AC204105) Xenopus (Silurana) tropicalis clone CH216-140D3, ...    44   5.3    1
(AC197895) Zea mays chromosome 1 clone ZMMBBb-537N19; ZMMBBb...    44   5.3    1
(AC191457) Zea mays chromosome 1 clone CH201-12J10; ZMMBBc00...    44   5.3    1
(AC191190) Aotus nancymaae clone CH258-1C24, WORKING DRAFT S...    44   5.3    1
(AC189925) Sorex araneus clone SA_Ba-594F19, WORKING DRAFT S...    44   5.3    1
(AC189486) Brassica rapa subsp. pekinensis clone KBrB084F01,...    44   5.3    1
(AC167942) Sorex araneus clone SA_Ba-357I10, WORKING DRAFT S...    44   5.3    1
(AC164670) Bos taurus clone CH240-146I14, *** SEQUENCING IN ...    44   5.3    1
(AC021111) Homo sapiens chromosome 15 clone RP11-255M2, WORK...    44   5.3    1
(AC012528) Homo sapiens clone RP11-45C19, WORKING DRAFT SEQU...    44   5.3    1
(AK132225) Mus musculus adult male brain cDNA, RIKEN full-le...    44   5.3    1
(AK038908) Mus musculus adult male hypothalamus cDNA, RIKEN ...    44   5.3    1
(FI213881) CccaBa036-B4TR CccABa Cajanus cajan genomic clone...    44   5.3    1
(ER968167) AF__Bc0018F10r AF__Bc Aquilegia formosa genomic, ...    44   5.3    1
(EK489614) 1095505008642 Global-Ocean-Sampling_GS-32-01-01-1...    44   5.3    1
(EI819442) POTEF76TR Solanum tuberosum RHPOTKEY BAC ends Sol...    44   5.3    1
(EI385692) POTAY94TF Solanum tuberosum RHPOTKEY BAC ends Sol...    44   5.3    1
(DE528218) Bombyx mori genomic DNA, Fosmid clone:GBMFno150_j...    44   5.3    1
(CL114799) ISB1-60L16_T7.1 ISB1 Xenopus (Silurana) tropicali...    44   5.3    1
(CC526727) CH240_401J9.T7 CHORI-240 Bos taurus genomic clone...    44   5.3    1
(CC289097) CH261-121P12_RM1.1 CH261 Gallus gallus genomic cl...    44   5.3    1
(BX175375) Danio rerio genomic clone DKEY-180L6, genomic sur...    44   5.3    1
(EC762524) PSE00005957 rw_mgpallid Polysphondylium pallidum ...    44   5.3    1
(EC762167) PSE00007722 rw_mgpallid Polysphondylium pallidum ...    44   5.3    1
(EC761369) PSE00001489 rw_mgpallid Polysphondylium pallidum ...    44   5.3    1
(EC379619) Pf_IL_319B02 TriplEx-5LD Flounder IL Induced Live...    44   5.3    1
(EC237122) 354879 CK01 Drosophila melanogaster cDNA clone 10...    44   5.3    1
(DW596351) CGX124-B12.x1d-t SHGC-CGX2 Gasterosteus aculeatus...    44   5.3    1
(DN721942) CNB141-B11.x1d-t SHGC-CNB Gasterosteus aculeatus ...    44   5.3    1
(DN683050) CGX27-G02.x1d-t SHGC-CGX Gasterosteus aculeatus c...    44   5.3    1
(DB874016) Lipochromis sp. 'matumbi hunter' cDNA clone:hm791...    44   5.3    1
(CN569628) tag54d05.y1 Hydra EST -Kiel 2 Hydra magnipapillat...    44   5.3    1
(AJ659467) Sus scrofa EST, clone C0005216_H04.                     44   5.3    1
(C82091) Paralichthys olivaceus leukocyte cDNA, clone: WC1-3.      44   5.3    1
(GO649216) EST_afim_evh_1050341 afimevh mixed_tissue Anoplop...    44   5.3    1
(GO644992) EST_afim_evh_1047323 afimevh mixed_tissue Anoplop...    44   5.3    1
(GO644991) EST_afim_evh_1058075 afimevh mixed_tissue Anoplop...    44   5.3    1
(GO636736) EST_afim_evh_919660 afimevh mixed_tissue Anoplopo...    44   5.3    1
(GO636735) EST_afim_evh_918508 afimevh mixed_tissue Anoplopo...    44   5.3    1
(GO621525) EST_afim_evh_747474 afimevh mixed_tissue Anoplopo...    44   5.3    1
(GO618281) EST_afim_evh_742129 afimevh mixed_tissue Anoplopo...    44   5.3    1
(GO617020) EST_afim_evh_726895 afimevh mixed_tissue Anoplopo...    44   5.3    1
(GO617019) EST_afim_evh_726511 afimevh mixed_tissue Anoplopo...    44   5.3    1
(GO616505) EST_afim_evh_743983 afimevh mixed_tissue Anoplopo...    44   5.3    1
(GE816148) EST_scau_evk_967301 scauevk mixed_tissue Sebastes...    44   5.3    1
(FE945810) Sma-USC-EA-2708 S. maximus Aeromonas cDNA library...    44   5.3    1
(EW980905) EST_sras_evg_781904 srasevg mixed_tissue Sebastes...    44   5.3    1
(EW980904) EST_sras_evg_781520 srasevg mixed_tissue Sebastes...    44   5.3    1
(EW979029) EST_sras_evg_780173 srasevg mixed_tissue Sebastes...    44   5.3    1
(EW192549) rpfco0128_j6.y1 fco Sus scrofa cDNA 5', mRNA sequ...    44   5.3    1
(EV250429) EST_cclu_evb_461452 ccluevb mixed_tissue Coregonu...    44   5.3    1
(CP000679) Caldicellulosiruptor saccharolyticus DSM 8903, co...    44   5.3    1
(AB206333) Enterococcus faecium plasmid pMG1 DNA, complete s...    44   5.3    1
(AB183714) Enterococcus faecium plasmid pHT beta DNA, comple...    44   5.3    1
(AC104998) Homo sapiens chromosome 8, clone CTC-830C11, comp...    38   5.4    4
(CU326360) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   5.5    3
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   5.5    9
(AC115584) Dictyostelium discoideum chromosome 2 map complem...    38   5.7    3
(CU468403) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   5.9    2
(AC110073) Homo sapiens BAC clone RP11-62A4 from 4, complete...    34   5.9    7
(AL844504) Plasmodium falciparum 3D7 chromosome 5.                 38   6.0    13
(AC215898) Populus trichocarpa clone POP041-L02, complete se...    34   6.2    5
(CR562022) Xenopus tropicalis EST, clone THdA003b16 3'.            36   6.3    2
(AC177663) Strongylocentrotus purpuratus clone R3-1017M3, WO...    40   6.5    4
(CT030032) Zebrafish DNA sequence from clone DKEY-11A4 in li...    40   6.5    2
(AC167870) Bos taurus clone CH240-177G3, WORKING DRAFT SEQUE...    38   6.7    2
(AC009784) Homo sapiens clone RP11-277F10 from 7q31, complet...    36   6.7    6
(AC203740) Rhinolophus ferrumequinum clone VMRC7-155I24, WOR...    32   6.9    4
(AL844508) Plasmodium falciparum 3D7 chromosome 9.                 36   6.9    13
(AM398681) Flavobacterium psychrophilum JIP02/86 complete ge...    34   7.0    14
(AC201173) Strongylocentrotus purpuratus clone R3-14M17, WOR...    40   7.0    3
(CU856378) Zebrafish DNA sequence from clone CH73-44P7 in li...    34   7.1    4
(AC202597) Medicago truncatula clone mth2-77n9, WORKING DRAF...    42   7.1    3
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   7.2    9
(CP000061) Aster yellows witches'-broom phytoplasma AYWB, co...    32   7.3    9
(BZ069167) lkh07g09.b1 B.oleracea002 Brassica oleracea genom...    34   7.3    2
(AL929469) Zebrafish DNA sequence from clone CH211-149K17 in...    38   7.3    4
(AC234914) Felis catus BAC clone FCAB-39H12 from chromosome ...    40   7.3    2
(AC154186) Mus musculus BAC clone RP24-435B3 from chromosome...    30   7.3    9
(AC235751) Medicago truncatula clone mth2-69m15, WORKING DRA...    36   7.4    6
(AC202515) Medicago truncatula clone mth2-61l2, WORKING DRAF...    34   7.4    4
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    32   7.4    9
(EF015898) Homo sapiens photolyase-like cryptochrome 1 (CRY1...    32   7.6    7
(FP312902) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   7.6    4
(BZ469082) BONAG43TR BO_1.6_2_KB_tot Brassica oleracea genom...    34   7.7    2
(AC129661) Rattus norvegicus clone CH230-6D22, *** SEQUENCIN...    38   7.8    4
(AC132541) Rattus norvegicus clone CH230-67D8, *** SEQUENCIN...    34   8.1    5
(BX296542) Zebrafish DNA sequence from clone CH211-278C10 in...    40   8.2    6
(AC193306) Rhinolophus ferrumequinum clone VMRC7-227D15, WOR...    32   8.3    4
(DD259514) Novel nucleic acids, and screening method using t...    32   8.3    2
(AP006861) Chlamydophila felis Fe/C-56 DNA, complete genome.       32   8.3    2
(DU667461) Bst000003 SAD small insert library Boechera stric...    34   8.4    2
(DU912119) 331497 Tomato EcoRI BAC Library Solanum lycopersi...    40   8.6    2
(FI740599) BOT01-90G17TF BOT01 Brassica oleracea genomic clo...    34   8.6    2
(EJ518413) 1092955114685 Global-Ocean-Sampling_GS-29-01-01-1...    34   8.9    2
(CG267029) OG3BG94TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    34   9.0    2
(EK091976) 1092962010094 Global-Ocean-Sampling_GS-31-01-01-1...    30   9.0    3
(AC171727) Solanum lycopersicum chromosome 1 clone C01HBa016...    40   9.0    6
(BX296525) Zebrafish DNA sequence from clone CH211-252F24 in...    34   9.0    4
(AC178331) Strongylocentrotus purpuratus clone R3-3104H11, W...    40   9.0    3
(AC010369) Homo sapiens chromosome 5 clone CTD-2048F20, comp...    38   9.0    4
(AL163002) Arabidopsis thaliana DNA chromosome 5, BAC clone ...    42   9.0    4
(AC011879) Homo sapiens clone RP11-16P14, WORKING DRAFT SEQU...    38   9.1    4
(EK001081) 1093025439544 Global-Ocean-Sampling_GS-30-02-01-1...    34   9.1    2
(AP009005) Bombyx mori genomic DNA, chromosome 21, BAC clone...    36   9.1    4
(EJ933122) 1093018816490 Global-Ocean-Sampling_GS-30-02-01-1...    34   9.1    2
(CT030141) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   9.2    5
(AC155061) Bos taurus clone CH240-27F6, WORKING DRAFT SEQUEN...    32   9.3    2
(AL844146) Mouse DNA sequence from clone RP24-89J1 on chromo...    32   9.3    2
(AC235235) Glycine max strain Williams 82 clone GM_WBb0028H0...    42   9.4    3
(BX901906) Mouse DNA sequence from clone RP23-328F9 on chrom...    32   9.4    2
(CU633516) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    30   9.4    2
(AC140905) Homo sapiens chromosome 16 clone RP11-844O12, WOR...    32   9.5    2
(CU062494) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    32   9.5    2
(BX649417) Zebrafish DNA sequence from clone CH211-227P7 in ...    30   9.5    2
(CU407242) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    30   9.5    2
(AC112508) Homo sapiens 3 BAC RP11-347G18 (Roswell Park Canc...    34   9.6    4
(EJ551595) 1092959452515 Global-Ocean-Sampling_GS-29-01-01-1...    34   9.7    2
(AC079440) Mus musculus strain 129/Sv clone ct7-340l7 map 2,...    32   9.7    2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   9.7    6
(AC093801) Homo sapiens BAC clone RP11-313E19 from 4, comple...    32   9.7    2
(BX323068) Zebrafish DNA sequence from clone DKEYP-25A6 in l...    36   9.8    3
(CR812471) Zebrafish DNA sequence from clone CH211-237A4 in ...    30   9.9    2

>(AU073894) Dictyostelium discoideum slug cDNA, clone SSI655.
          Length = 240

 Score =  476 bits (240), Expect = e-130
 Identities = 240/240 (100%)
 Strand = Plus / Plus


Query: 1   aaaaattattacaaacaaatatttaccaaacaatgaatccaaaagataaaagagttaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aaaaattattacaaacaaatatttaccaaacaatgaatccaaaagataaaagagttaatt 60


Query: 61  ttggttctatggaacctttaataagagatattggtacagtttatgaattttattttgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttggttctatggaacctttaataagagatattggtacagtttatgaattttattttgatc 120


Query: 121 aaaatacatttatagaatcagaaataaaaacatttttaaaagaatttgaaacaaagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaatacatttatagaatcagaaataaaaacatttttaaaagaatttgaaacaaagagag 180


Query: 181 gagatagagatttatattcactttcacaacaaaccataaatgcaaataatacaattgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gagatagagatttatattcactttcacaacaaaccataaatgcaaataatacaattgtaa 240

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 105743758
Number of Hits to DB: 693,911,137
Number of extensions: 50185906
Number of successful extensions: 4681206
Number of sequences better than 10.0: 340
Length of query: 510
Length of database: 104,622,809,269
Length adjustment: 23
Effective length of query: 487
Effective length of database: 102,190,702,835
Effective search space: 49766872280645
Effective search space used: 49766872280645
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 8. 1
Homology vs Protein 
Query= Contig-U05475-1 (Contig-U05475-1Q) /CSM_Contig/Contig-U05475-1Q.Seq.d
         (510 letters)

Database: nrp_A
           3,268,448 sequences; 1,061,185,681 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54TC6) RecName: Full=Protein Muted homolog;                         261   7e-69
(Q5ZK77) RecName: Full=Protein Muted homolog;  &AJ720207_1(AJ720...    46   5e-04
(A1L3H4) RecName: Full=Protein Muted homolog;  &BC130100_1(BC130...    44   0.002
(Q8R015) RecName: Full=Protein Muted;  &AF426433_1(AF426433|pid:...    40   0.033
(Q8TDH9) RecName: Full=Protein Muted homolog;  &AF426434_1(AF426...    40   0.043
BC032438_1(BC032438|pid:none) Homo sapiens muted homolog (mouse)...    40   0.043
BC166529_1(BC166529|pid:none) Rattus norvegicus muted homolog (m...    40   0.043
BT081763_1(BT081763|pid:none) Rana catesbeiana clone rcat-evr-50...    39   0.096
(A5A777) Protein Muted homolog.  &AB271947_1(AB271947|pid:none)        38   0.12
BC153651_1(BC153651|pid:none) Danio rerio zgc:113385, mRNA (cDNA...    37   0.28
AM910995_58(AM910995|pid:none) Plasmodium knowlesi strain H chro...    36   0.47
AL844506_217(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    36   0.62
CP000107_695(CP000107|pid:none) Ehrlichia canis str. Jake, compl...    35   1.1
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B...    33   3.1
CP001176_4768(CP001176|pid:none) Bacillus cereus B4264, complete...    33   4.0
AF025467_5(AF025467|pid:none) Caenorhabditis elegans cosmid R148...    33   5.3
AF223938_1(AF223938|pid:none) Homo sapiens ninein isotype 2 mRNA...    33   5.3
AM910991_49(AM910991|pid:none) Plasmodium knowlesi strain H chro...    33   5.3
DQ011583_1(DQ011583|pid:none) Plasmodium cynomolgi Berok reticul...    33   5.3
AF223937_1(AF223937|pid:none) Homo sapiens ninein isotype 1 mRNA...    33   5.3
AF223939_1(AF223939|pid:none) Homo sapiens ninein isotype 3 mRNA...    33   5.3
(Q9HBY5) RecName: Full=Ninein; AltName: Full=hNinein; AltName: F...    33   5.3
T32404(T32404)hypothetical protein R148.3 - Caenorhabditis elegans     33   5.3
AE014185_56(AE014185|pid:none) Plasmodium falciparum 3D7 chromos...    32   6.9
EU579525_1(EU579525|pid:none) Plasmodium yoelii sporozoite and l...    32   7.0
AE013599_4088(AE013599|pid:none) Drosophila melanogaster chromos...    32   9.0
CP001083_1966(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    32   9.0
AJ577475_1(AJ577475|pid:none) Drosophila melanogaster mRNA for p...    32   9.0
AY119617_1(AY119617|pid:none) Drosophila melanogaster LD44530 fu...    32   9.0
AE013599_4091(AE013599|pid:none) Drosophila melanogaster chromos...    32   9.0
DQ973815_1(DQ973815|pid:none) Plasmodium fragile normocyte-bindi...    32   9.0
AY058322_1(AY058322|pid:none) Drosophila melanogaster GH09291 fu...    32   9.0
AE013599_4092(AE013599|pid:none) Drosophila melanogaster chromos...    32   9.0
CR548612_9(CR548612|pid:none) Paramecium tetraurelia macronuclea...    32   9.0

>(Q54TC6) RecName: Full=Protein Muted homolog;
          Length = 158

 Score =  261 bits (667), Expect = 7e-69
 Identities = 136/158 (86%), Positives = 136/158 (86%)
 Frame = +3

Query: 33  MNPKDKRVNFGSMEPLIRDIGTVYEFYFDQNTFIESEIKTFLKEFETKRGDRDLYSLSQQ 212
           MNPKDKRVNFGSMEPLIRDIGTVYEFYFDQNTFIESEIKTFLKEFETKRGDRDLYSLSQQ
Sbjct: 1   MNPKDKRVNFGSMEPLIRDIGTVYEFYFDQNTFIESEIKTFLKEFETKRGDRDLYSLSQQ 60

Query: 213 XXXXXXXXXXXXRSIHQSSQFLEXXXXXXXXXXSKLSTQVENESIHQEQRNNDRLNKFEL 392
                       RSIHQSSQFLE          SKLSTQVENESIHQEQRNNDRLNKFEL
Sbjct: 61  TINANNTIVNINRSIHQSSQFLENINNNLNQINSKLSTQVENESIHQEQRNNDRLNKFEL 120

Query: 393 ELVEKKSIEDSFNQRKSQIENDFNEKASVLRDKYQIVL 506
           ELVEKKSIEDSFNQRKSQIENDFNEKASVLRDKYQIVL
Sbjct: 121 ELVEKKSIEDSFNQRKSQIENDFNEKASVLRDKYQIVL 158

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3268448
Number of Hits to DB: 580,153,305
Number of extensions: 10079530
Number of successful extensions: 30390
Number of sequences better than 10.0: 34
Number of HSP's gapped: 30360
Number of HSP's successfully gapped: 34
Length of query: 170
Length of database: 1,061,185,681
Length adjustment: 119
Effective length of query: 51
Effective length of database: 672,240,369
Effective search space: 34284258819
Effective search space used: 34284258819
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.71  gvh: 0.32  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for Contig-U05475-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0