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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06384-1
Contig ID Contig-U06384-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06384-1 (Contig-U06384-1Q) /CSM_Contig/Contig-U06384-1Q.Seq.d
TGAAAAAATTAGAGACAACAAGTGGATCAGCACGTAAAGTATGGCGTTTA
GGTAATACATTGGCCGAGCAACAAAAGATTTTAGCATTATTCAAAGTAAA
GAATCCATTTGCCTTTTTAAATATTCTAGCATTGATTAGACAAAGTGGAA
TGTATTTCTATTGGGTATTCGATCATTTAATCCTTGGTACCAACATTGGT
TTATGTAAATTTGATACTGTCAAATTGGGTTGGTATTCAAGTGTTAGTTG
GTTCTTTGGTTTATTATGTTCAATCATTATCGATTTAAATACATTGGCCA
TCATGTTAAAGAAAGAGAAATCACTCAGATTAACAATCACTCAAAATAAA
ATCAATGCAAATAATAATAACATCGATACTCATACAATCACCTCTGAAGT
CGAAAATAAAGCAATCATCGATCAATTCAATGAAGTCATTAAAAAGAAGA
ATGAAATCTATTTAAATTGTGCAAAGAATGGTTCAGATTTAATCATTGCT
TCAACTTTATTAAAAATTTATCCATTCTCTCAAGGTACAATTGGTATTTC
TGGTATAATTTCTGCATTAATTGGTGCTTATCAAATGTGGCCAAAATAAA
TTTTAATTAAAAATAAATAATAAAATAAATAAAAATAAAAATTAATTTCC
AAAAATAAAA
Gap no gap
Contig length 660
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 3008439
End point 3007779
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U06384
List of clone(s) 

est1=VSD865Z,1,581
est2=VSB566E,308,661
Translated Amino Acid sequence 
KKLETTSGSARKVWRLGNTLAEQQKILALFKVKNPFAFLNILALIRQSGMYFYWVFDHLI
LGTNIGLCKFDTVKLGWYSSVSWFFGLLCSIIIDLNTLAIMLKKEKSLRLTITQNKINAN
NNNIDTHTITSEVENKAIIDQFNEVIKKKNEIYLNCAKNGSDLIIASTLLKIYPFSQGTI
GISGIISALIGAYQMWPK*iliknk**nk*k*klisknk
Translated Amino Acid sequence (All Frames) 
Frame A:
*kn*rqqvdqhvkygv*vihwpsnkrf*hysk*rihlpf*if*h*ldkvecisigysii*
slvptlvyvnlilsnwvgiqvlvgslvyyvqslsi*ihwpsc*rkrnhsd*qslkiksmq
iiitsiliqsplkskikqssinsmkslkrrmksi*ivqrmvqi*sllqly*kfihslkvq
lvflv*flh*lvlikcgqnkf*lkinnkinknkn*fpkik


Frame B:
ekirdnkwist*smafr*yigratkdfsiiqskesiclfkyssid*tkwnvfllgirsfn
pwyqhwfm*i*ycqiglvfkc*lvlwfimfnhyrfkyighhvkereitqinnhsk*nqck
***hrysynhl*srk*snhrsiq*sh*kee*nlfklckewfrfnhcfnfiknlsilsryn
wyfwynfcinwclsnvakinfn*k*iik*ikikinfqk*


Frame C:
KKLETTSGSARKVWRLGNTLAEQQKILALFKVKNPFAFLNILALIRQSGMYFYWVFDHLI
LGTNIGLCKFDTVKLGWYSSVSWFFGLLCSIIIDLNTLAIMLKKEKSLRLTITQNKINAN
NNNIDTHTITSEVENKAIIDQFNEVIKKKNEIYLNCAKNGSDLIIASTLLKIYPFSQGTI
GISGIISALIGAYQMWPK*iliknk**nk*k*klisknk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06384-1 (Contig-U06384-1Q)
/CSM_Contig/Contig-U06384-1Q.Seq.d
         (660 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06384-1 (Contig-U06384-1Q) /CSM_Contig/Conti...  1174  0.0
Contig-U11623-1 (Contig-U11623-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U02610-1 (Contig-U02610-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14497-1 (Contig-U14497-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U14059-1 (Contig-U14059-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U11459-1 (Contig-U11459-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U11153-1 (Contig-U11153-1Q) /CSM_Contig/Conti...    36  0.046
Contig-U12877-1 (Contig-U12877-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U12120-1 (Contig-U12120-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U11353-1 (Contig-U11353-1Q) /CSM_Contig/Conti...    34  0.18

>Contig-U06384-1 (Contig-U06384-1Q) /CSM_Contig/Contig-U06384-1Q.Seq.d
          Length = 660

 Score = 1174 bits (592), Expect = 0.0
 Identities = 592/592 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaaaaattagagacaacaagtggatcagcacgtaaagtatggcgtttaggtaatacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgaaaaaattagagacaacaagtggatcagcacgtaaagtatggcgtttaggtaatacat 60

                                                                       
Query: 61  tggccgagcaacaaaagattttagcattattcaaagtaaagaatccatttgcctttttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggccgagcaacaaaagattttagcattattcaaagtaaagaatccatttgcctttttaa 120

                                                                       
Query: 121 atattctagcattgattagacaaagtggaatgtatttctattgggtattcgatcatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atattctagcattgattagacaaagtggaatgtatttctattgggtattcgatcatttaa 180

                                                                       
Query: 181 tccttggtaccaacattggtttatgtaaatttgatactgtcaaattgggttggtattcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tccttggtaccaacattggtttatgtaaatttgatactgtcaaattgggttggtattcaa 240

                                                                       
Query: 241 gtgttagttggttctttggtttattatgttcaatcattatcgatttaaatacattggcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgttagttggttctttggtttattatgttcaatcattatcgatttaaatacattggcca 300

                                                                       
Query: 301 tcatgttaaagaaagagaaatcactcagattaacaatcactcaaaataaaatcaatgcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcatgttaaagaaagagaaatcactcagattaacaatcactcaaaataaaatcaatgcaa 360

                                                                       
Query: 361 ataataataacatcgatactcatacaatcacctctgaagtcgaaaataaagcaatcatcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ataataataacatcgatactcatacaatcacctctgaagtcgaaaataaagcaatcatcg 420

                                                                       
Query: 421 atcaattcaatgaagtcattaaaaagaagaatgaaatctatttaaattgtgcaaagaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atcaattcaatgaagtcattaaaaagaagaatgaaatctatttaaattgtgcaaagaatg 480

                                                                       
Query: 481 gttcagatttaatcattgcttcaactttattaaaaatttatccattctctcaaggtacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttcagatttaatcattgcttcaactttattaaaaatttatccattctctcaaggtacaa 540

                                                               
Query: 541 ttggtatttctggtataatttctgcattaattggtgcttatcaaatgtggcc 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttggtatttctggtataatttctgcattaattggtgcttatcaaatgtggcc 592


>Contig-U11623-1 (Contig-U11623-1Q) /CSM_Contig/Contig-U11623-1Q.Seq.d
          Length = 1528

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 344 aaataaaatcaatgcaaataataa 367
           |||||||||| |||||||||||||
Sbjct: 253 aaataaaatcgatgcaaataataa 276


>Contig-U02610-1 (Contig-U02610-1Q) /CSM_Contig/Contig-U02610-1Q.Seq.d
          Length = 683

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 333 acaatcactcaaaataaaatcaat 356
           |||||||||| |||||||||||||
Sbjct: 330 acaatcactctaaataaaatcaat 307


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,935
Number of Sequences: 6905
Number of extensions: 19935
Number of successful extensions: 1566
Number of sequences better than 10.0: 108
length of query: 660
length of database: 5,674,871
effective HSP length: 16
effective length of query: 644
effective length of database: 5,564,391
effective search space: 3583467804
effective search space used: 3583467804
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11. 8
Homology vs DNA 
Query= Contig-U06384-1 (Contig-U06384-1Q) /CSM_Contig/Contig-U06384-1Q.Seq.d
         (660 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU264677) Dictyostelium discoideum vegetative cDNA clone:VS...  1152   0.0    1
(AU262100) Dictyostelium discoideum vegetative cDNA clone:VS...   565   e-157  1
(EJ028127) 1095454032238 Global-Ocean-Sampling_GS-26-01-01-1...    50   0.10   1
(AC182739) Gasterosteus aculeatus clone VMRC26-26K03, comple...    48   0.40   1
(AL844596) Mouse DNA sequence from clone RP23-35J22 on chrom...    48   0.40   1
(AC162598) Bos taurus clone CH240-114M2, WORKING DRAFT SEQUE...    48   0.40   1
(AG390078) Mus musculus molossinus DNA, clone:MSMg01-206H17....    48   0.40   1
(CN573242) rc16g12.x1 Meloidogyne hapla egg pAMP1 v1 Meloido...    48   0.40   1
(N29995) yx82d02.s1 Soares melanocyte 2NbHM Homo sapiens cDN...    48   0.40   1
(AP007655) Lotus japonicus genomic DNA, chromosome 2, clone:...    42   0.48   5
(AP006148) Lotus japonicus genomic DNA, chromosome 2, clone:...    42   0.49   5
(AC192118) Pan troglodytes chromosome X clone CH251-700J19, ...    32   0.84   2
(AC174298) Medicago truncatula chromosome 8 clone mth2-78e20...    40   1.3    4
(AC147964) Medicago truncatula chromosome 8 clone mth2-5i18,...    40   1.3    4
(AC158445) Loxodonta africana clone VMRC15-108C7, WORKING DR...    46   1.6    1
(AM623901) Entamoeba dispar GSS, clone dispar104h02.p1k.           46   1.6    1
(CT412577) Sus scrofa genomic clone CH242-472P4, genomic sur...    46   1.6    1
(FG780402) G1147P318FG23.T0 Anolis carolinensis pooled norma...    46   1.6    1
(FD716576) CAAA2298.rev CAAA Petromyzon marinus Petromyzon m...    46   1.6    1
(EY268329) BF01045B1C01.f1 Normalized subtracted keck librar...    46   1.6    1
(EY266342) BF01046A2B08.f1 Normalized subtracted keck librar...    46   1.6    1
(CP000903) Bacillus weihenstephanensis KBAB4, complete genome.     46   1.6    1
(EG607570) BRAINF100762M15 POSSUM_01-POSSUM-C-BRAIN-2KB Tric...    38   2.2    2
(AC141565) Mus musculus BAC clone RP23-160M21 from chromosom...    38   2.6    3
(DY886795) CeleSEQ2584 Cunninghamella elegans pBluescript (E...    28   2.8    4
(AC223698) Bos taurus clone CH240-460G7, WORKING DRAFT SEQUE...    32   3.2    2
(EJ813416) 1093017502550 Global-Ocean-Sampling_GS-30-02-01-1...    36   3.2    2
(AP007787) Lotus japonicus genomic DNA, clone:LjT44J22, TM1071.    38   3.3    4
(EJ904307) 1093018504882 Global-Ocean-Sampling_GS-30-02-01-1...    36   3.9    2
(AC167024) Bos taurus clone CH240-304E8, WORKING DRAFT SEQUE...    38   5.1    5
(AC015899) Homo sapiens clone RP11-23A8, LOW-PASS SEQUENCE S...    36   5.1    5
(AL772144) Zebrafish DNA sequence from clone CH211-164J3 in ...    44   6.3    1
(AP009732) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   6.3    1
(DJ357758) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN...    44   6.3    1
(DJ357640) METHODS AND NUCLEIC ACIDS FOR THE ANALYSIS OF GEN...    44   6.3    1
(CS113477) Sequence 235 from Patent WO2005054517.                  44   6.3    1
(CS113359) Sequence 117 from Patent WO2005054517.                  44   6.3    1
(AC008534) Homo sapiens chromosome 5 clone CTC-484P3, comple...    44   6.3    1
(AC160087) Bos taurus clone CH240-81O9, WORKING DRAFT SEQUEN...    44   6.3    1
(AC155759) Bos taurus clone CH240-32N24, WORKING DRAFT SEQUE...    44   6.3    1
(AC134019) Rattus norvegicus clone CH230-37I14, *** SEQUENCI...    44   6.3    1
(AC107044) Pan troglodytes clone S13402.BCM-17, *** SEQUENCI...    44   6.3    1
(AC105871) Rattus norvegicus clone CH230-150F21, *** SEQUENC...    44   6.3    1
(AC098320) Rattus norvegicus clone CH230-1N24, *** SEQUENCIN...    44   6.3    1
(AC096611) Rattus norvegicus clone CH230-54A16, WORKING DRAF...    44   6.3    1
(AC027303) Homo sapiens chromosome 5 clone CTB-100B21, WORKI...    44   6.3    1
(CU137670) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.3    1
(AC173190) Bos taurus clone CH240-177K5, WORKING DRAFT SEQUE...    44   6.3    1
(AC169601) Bos taurus clone CH240-202E19, WORKING DRAFT SEQU...    44   6.3    1
(BH358926) CH230-47G9.TV CHORI-230 Segment 1 Rattus norvegic...    44   6.3    1
(AZ555498) RPCI-23-215F18.TJ RPCI-23 Mus musculus genomic cl...    44   6.3    1
(AG971994) Drosophila simulans DNA, clone: DSM1-011M01.F.fa,...    44   6.3    1
(CZ025832) CH240_188F08.TJ CHORI-240 Bos taurus genomic clon...    44   6.3    1
(BH616307) BMBAC307E08SP6_PSU Brugia malayi Genomic Bac Libr...    44   6.3    1
(AJ953304) Sus scrofa EST, clone C0007737k11, 5' direction.        44   6.3    1
(AJ952018) Sus scrofa EST, clone C0007737k11, 3' direction.        44   6.3    1
(EY341446) CAWZ11164.rev CAWZ Helobdella robusta Primary Lat...    44   6.3    1
(EW968139) LS_14_J18_T7 Headlice composite library with all ...    44   6.3    1
(AE017308) Mycoplasma mobile 163K complete genome.                 44   6.3    1
(AC218281) Bos taurus clone CH240-288L22, WORKING DRAFT SEQU...    32   7.1    8
(AC158406) Oryza sativa Japonica Group chromosome 10 clone P...    42   7.7    2
(AP002963) Homo sapiens genomic DNA, chromosome 11 clone:RP1...    42   8.8    2
(AC073253) Homo sapiens chromosome 8 clone RP11-158I6, WORKI...    34   9.2    4

>(AU264677) Dictyostelium discoideum vegetative cDNA clone:VSD865,
           3' end single read.
          Length = 581

 Score = 1152 bits (581), Expect = 0.0
 Identities = 581/581 (100%)
 Strand = Plus / Plus


Query: 1   tgaaaaaattagagacaacaagtggatcagcacgtaaagtatggcgtttaggtaatacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tgaaaaaattagagacaacaagtggatcagcacgtaaagtatggcgtttaggtaatacat 60


Query: 61  tggccgagcaacaaaagattttagcattattcaaagtaaagaatccatttgcctttttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tggccgagcaacaaaagattttagcattattcaaagtaaagaatccatttgcctttttaa 120


Query: 121 atattctagcattgattagacaaagtggaatgtatttctattgggtattcgatcatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atattctagcattgattagacaaagtggaatgtatttctattgggtattcgatcatttaa 180


Query: 181 tccttggtaccaacattggtttatgtaaatttgatactgtcaaattgggttggtattcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tccttggtaccaacattggtttatgtaaatttgatactgtcaaattgggttggtattcaa 240


Query: 241 gtgttagttggttctttggtttattatgttcaatcattatcgatttaaatacattggcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtgttagttggttctttggtttattatgttcaatcattatcgatttaaatacattggcca 300


Query: 301 tcatgttaaagaaagagaaatcactcagattaacaatcactcaaaataaaatcaatgcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcatgttaaagaaagagaaatcactcagattaacaatcactcaaaataaaatcaatgcaa 360


Query: 361 ataataataacatcgatactcatacaatcacctctgaagtcgaaaataaagcaatcatcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ataataataacatcgatactcatacaatcacctctgaagtcgaaaataaagcaatcatcg 420


Query: 421 atcaattcaatgaagtcattaaaaagaagaatgaaatctatttaaattgtgcaaagaatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atcaattcaatgaagtcattaaaaagaagaatgaaatctatttaaattgtgcaaagaatg 480


Query: 481 gttcagatttaatcattgcttcaactttattaaaaatttatccattctctcaaggtacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttcagatttaatcattgcttcaactttattaaaaatttatccattctctcaaggtacaa 540


Query: 541 ttggtatttctggtataatttctgcattaattggtgcttat 581
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttggtatttctggtataatttctgcattaattggtgcttat 581

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 787,434,053
Number of extensions: 52605871
Number of successful extensions: 4326558
Number of sequences better than 10.0: 63
Length of query: 660
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 637
Effective length of database: 93,106,754,628
Effective search space: 59309002698036
Effective search space used: 59309002698036
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.21
Homology vs Protein 
Query= Contig-U06384-1 (Contig-U06384-1Q) /CSM_Contig/Contig-U06384-1Q.Seq.d
         (660 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR382129_151(CR382129|pid:none) Yarrowia lipolytica strain CLIB1...    50   8e-05
AF521556_1(AF521556|pid:none) Penicillium chrysogenum peroxin-11...    42   0.012
FJ937947_1(FJ937947|pid:none) Penicillium aurantiogriseum strain...    42   0.012
BC151942_1(BC151942|pid:none) Danio rerio si:dkeyp-84g1.1, mRNA ...    39   0.10
EF146772_1(EF146772|pid:none) Populus trichocarpa clone WS01213_...    37   0.39
AF261140_1(AF261140|pid:none) Lycopersicon esculentum unknown mR...    37   0.66
BX664607_2(BX664607|pid:none) Zebrafish DNA sequence from clone ...    35   1.5
(Q0VCP2) RecName: Full=Peroxisomal membrane protein 11A; AltName...    35   1.9
(O75192) RecName: Full=Peroxisomal membrane protein 11A; AltName...    34   4.3
AY894104_1(AY894104|pid:none) Synthetic construct Homo sapiens c...    34   4.3
H89045(H89045)protein B0238.13 [imported] - Caenorhabditis elegans     33   5.6
T20676(T20676) hypothetical protein F10A3.1 - Caenorhabditis ele...    33   7.3
CP000246_1123(CP000246|pid:none) Clostridium perfringens ATCC 13...    33   7.3

>CR382129_151(CR382129|pid:none) Yarrowia lipolytica strain CLIB122
           chromosome C complete sequence.
          Length = 233

 Score = 49.7 bits (117), Expect = 8e-05
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
 Frame = +3

Query: 3   KKLETTSGSARKVWRLGNTLAEQQKILALFKVKNPFAFLNILALIRQSGMYFYWVFDHLI 182
           +K++     ARK++R+G  +   +     F+ K     L    + R  G   Y VFD +I
Sbjct: 56  RKIQNQFSMARKLFRVGKPIGHLKTAAVSFENKTLDPCLRYTTIGRNLGYAIYLVFDSII 115

Query: 183 LGTNIGLCKFDTVK-LGWYSSVSWFFGLLCSIIIDLNTLAIMLKKEKSL 326
                G+ K D +K +    S  W FG+ C+I+  ++ + I  KK  +L
Sbjct: 116 YINGSGIKKIDNIKTIKKVGSYFWAFGIFCNILNSIHKINICKKKRAAL 164

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 829,835,213
Number of extensions: 15070521
Number of successful extensions: 34707
Number of sequences better than 10.0: 13
Number of HSP's gapped: 34694
Number of HSP's successfully gapped: 13
Length of query: 220
Length of database: 1,040,966,779
Length adjustment: 124
Effective length of query: 96
Effective length of database: 643,635,439
Effective search space: 61789002144
Effective search space used: 61789002144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.58  gvh: 0.51  alm: 0.29  top: 0.67  tms: 0.07  mit: 0.28  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.09  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U06384-1 is nuc
VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0