Contig-U01335-1
Contig ID Contig-U01335-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01335-1 (Contig-U01335-1Q) /CSM_Contig/Contig-U01335-1Q.Seq.d
CAATTAATGGTGGAATTCACTCTTCATCTTCATCTTCAACTATTATTCAA
TCAACTAATAATAGTATTTCTTCAAATAACAACACATTAGCATCAGTATT
ATCCAATTCAAATTCTAACCCACTACCATCATCTTCTTCACAAGCATCTT
CATCATCAACACCTTTAACAATACAATCCTCAACTTCTAATAATAATAAT
AATAATAATAATAA

Gap no gap
Contig length 214
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 3465838
End point 3466052
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U01335
List of clone(s)

est1=SLG280F,1,215
Translated Amino Acid sequence
INGGIHSSSSSSTIIQSTNNSISSNNNTLASVLSNSNSNPLPSSSSQASSSSTPLTIQSS
TSNNNNNNNN


Translated Amino Acid sequence (All Frames)
Frame A:
qlmveftlhlhlqllfnqliivflqitth*hqyypiqilthyhhllhkhlhhqhl*qynp
qlliiiiiiii


Frame B:
n*wwnslfififnyysin***yffk*qhisisiiqfkf*pttiifftsifiintfnntil
nf*********


Frame C:
INGGIHSSSSSSTIIQSTNNSISSNNNTLASVLSNSNSNPLPSSSSQASSSSTPLTIQSS
TSNNNNNNNN


own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01335-1 (Contig-U01335-1Q)
/CSM_Contig/Contig-U01335-1Q.Seq.d
(214 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01335-1 (Contig-U01335-1Q) /CSM_Contig/Conti... 371 e-103
Contig-U00081-1 (Contig-U00081-1Q) /CSM_Contig/Conti... 42 3e-04
Contig-U12411-1 (Contig-U12411-1Q) /CSM_Contig/Conti... 38 0.005
Contig-U11405-1 (Contig-U11405-1Q) /CSM_Contig/Conti... 38 0.005
Contig-U11085-1 (Contig-U11085-1Q) /CSM_Contig/Conti... 38 0.005
Contig-U14342-1 (Contig-U14342-1Q) /CSM_Contig/Conti... 36 0.020
Contig-U14078-1 (Contig-U14078-1Q) /CSM_Contig/Conti... 36 0.020
Contig-U13211-1 (Contig-U13211-1Q) /CSM_Contig/Conti... 36 0.020
Contig-U12130-1 (Contig-U12130-1Q) /CSM_Contig/Conti... 36 0.020
Contig-U12051-1 (Contig-U12051-1Q) /CSM_Contig/Conti... 36 0.020

>Contig-U01335-1 (Contig-U01335-1Q) /CSM_Contig/Contig-U01335-1Q.Seq.d
Length = 214

Score = 371 bits (187), Expect = e-103
Identities = 187/187 (100%)
Strand = Plus / Plus


Query: 1 caattaatggtggaattcactcttcatcttcatcttcaactattattcaatcaactaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caattaatggtggaattcactcttcatcttcatcttcaactattattcaatcaactaata 60


Query: 61 atagtatttcttcaaataacaacacattagcatcagtattatccaattcaaattctaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atagtatttcttcaaataacaacacattagcatcagtattatccaattcaaattctaacc 120


Query: 121 cactaccatcatcttcttcacaagcatcttcatcatcaacacctttaacaatacaatcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cactaccatcatcttcttcacaagcatcttcatcatcaacacctttaacaatacaatcct 180


Query: 181 caacttc 187
|||||||
Sbjct: 181 caacttc 187


>Contig-U00081-1 (Contig-U00081-1Q) /CSM_Contig/Contig-U00081-1Q.Seq.d
Length = 1440

Score = 42.1 bits (21), Expect = 3e-04
Identities = 24/25 (96%)
Strand = Plus / Minus


Query: 21 tcttcatcttcatcttcaactatta 45
||||||||||||||||||| |||||
Sbjct: 972 tcttcatcttcatcttcaaatatta 948


Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 24 tcatcttcatcttca 38
|||||||||||||||
Sbjct: 975 tcatcttcatcttca 961


>Contig-U12411-1 (Contig-U12411-1Q) /CSM_Contig/Contig-U12411-1Q.Seq.d
Length = 2128

Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 20 ctcttcatcttcatcttca 38
|||||||||||||||||||
Sbjct: 537 ctcttcatcttcatcttca 519


Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus


Query: 21 tcttcatcttcatc 34
||||||||||||||
Sbjct: 530 tcttcatcttcatc 517


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6644
Number of Sequences: 8361
Number of extensions: 6644
Number of successful extensions: 2533
Number of sequences better than 10.0: 419
length of query: 214
length of database: 7,895,291
effective HSP length: 15
effective length of query: 199
effective length of database: 7,769,876
effective search space: 1546205324
effective search space used: 1546205324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 4.26
Homology vs DNA
Query= Contig-U01335-1 (Contig-U01335-1Q) /CSM_Contig/Contig-U01335-1Q.Seq.d
(214 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU061837) Dictyostelium discoideum slug cDNA, clone SLG280. 371 7e-99 1
(AB028634) Flammulina velutipes mitochondrial gene for RNA p... 52 0.008 1
(DY915322) CHAY11220.b2_G21.ab1 CHA(XYZ) common wild sunflow... 52 0.008 1
(AJ541596) Helianthus annuus EST, clone HO0012C17. 52 0.008 1
(AJ539637) Helianthus annuus EST, clone HM0002F10. 52 0.008 1
(CF094916) QHN19H21.yg.ab1 QH_N sunflower H.argophyllus (dro... 52 0.008 1
(BM165469) EST567992 PyBS Plasmodium yoelii yoelii cDNA clon... 32 0.009 3
(BM170514) EST573037 PyBS Plasmodium yoelii yoelii cDNA clon... 34 0.009 3
(AZ546009) ENTFW53TF Entamoeba histolytica Sheared DNA Entam... 36 0.012 3
(AZ550256) ENTEV58TR Entamoeba histolytica Sheared DNA Entam... 36 0.014 3
(DN731063) CNB56-D12.x1d-t SHGC-CNB Gasterosteus aculeatus c... 40 0.026 2
(DN712352) CNB01-G11.x1d-t SHGC-CNB Gasterosteus aculeatus c... 40 0.026 2
(CG953778) MBEKG61TRB mth2 Medicago truncatula genomic clone... 36 0.026 2
(DT582879) wmi03-13ms4-e03 Wmi03 Welwitschia mirabilis cDNA ... 36 0.034 3
(EL421682) CHCM1235.b1_E21.ab1 CHC(LMS) Texas blueweed Helia... 38 0.039 3
(EK470199) 1095469447714 Global-Ocean-Sampling_GS-32-01-01-1... 36 0.042 3
(AZ530768) ENTBH54TF Entamoeba histolytica Sheared DNA Entam... 36 0.048 3
(AU262807) Dictyostelium discoideum vegetative cDNA clone:VS... 36 0.057 3
(CX552206) ydb21c02.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.057 3
(CX681081) ydb77d09.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.060 3
(CX553674) ydb30e08.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.062 3
(CX557480) yda37e04.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.062 3
(CX691045) yde49e08.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.070 3
(CX558769) yda56g06.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.077 3
(CX198414) ydf29b11.y1 Sea urchin EST Lib1 Strongylocentrotu... 36 0.082 3
(EE049942) zf_003_A10 Developmental library I Taeniopygia gu... 36 0.084 2
(CD341350) StrPu536.005171 Sea urchin embryo 40hr gastrula s... 36 0.087 3
(CX559971) ydb35a07.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.090 3
(CX555797) yda68b05.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.091 3
(CX557924) yda42h06.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.092 3
(GE612891) CCPX9620.b1_G05.ab1 CCP(UWX) Globe Artichoke Cyna... 36 0.094 2
(CX553455) yda26f03.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.10 3
(EL452285) CHTM511.b1_N07.ab1 CHT(LMS) Jerusalem artichoke H... 36 0.11 2
(CX079074) yda07c06.y1 Sea urchin EST Lib1 Strongylocentrotu... 36 0.11 3
(AV442829) Arabidopsis thaliana cDNA clone:APZ24f09_r, 5' end. 30 0.12 3
(AG430440) Mus musculus molossinus DNA, clone:MSMg01-305H17.... 48 0.13 1
(CA301103) SCRLLV1053F05.g LV1 Saccharum officinarum cDNA cl... 48 0.13 1
(BG784196) SEAUMC004153 Sea urchin primary mesenchyme cell c... 36 0.14 3
(FG122923) 4090-90-A09 Oenothera strain hookeri de Vries lea... 30 0.14 4
(FH046066) CHO_OF3196xg09r1.ab1 CHO_OF3 Nicotiana tabacum ge... 36 0.16 3
(DN577779) 93820910 Sea Urchin primary mesenchyme cell cDNA ... 36 0.18 3
(G37798) GARP Plasmodium falciparum haploid Plasmodium falci... 36 0.18 2
(EK007323) 1092955116682 Global-Ocean-Sampling_GS-31-01-01-1... 36 0.19 3
(DN782721) 91493436 Sea Urchin primary mesenchyme cell cDNA ... 36 0.21 3
(CX538443) s13dNF79D10GS078_460138 Germinating Seed Medicago... 36 0.22 2
(FD966203) RR1HA38TF RR1(CS) Raphanus raphanistrum subsp. ma... 42 0.23 2
(EL499972) 004_PFLAB1-S-PLATE8B.AB1 Blood stage Plasmodium f... 36 0.26 2
(CW846408) GT13226.Ds5.11.13.2003.jx40.571 Arabidopsis thali... 30 0.27 3
(DT716331) cl260ct275cn291 Zhikong scallop Chlamys farreri c... 38 0.27 2
(BX663505) Zebrafish DNA sequence from clone CH211-246N15 in... 36 0.29 2
(EL503421) G11_PFLAB1-M-PLATE1B.AB1 Blood stage Plasmodium f... 36 0.30 2
(CR296967) mte1-13H20FM1 BAC end, cultivar Jemalong A17 of M... 38 0.30 2
(AY563020) Plasmodium yoelii killicki isolate 194ZZ merozoit... 36 0.31 3
(AY563019) Plasmodium yoelii killicki isolate 193L merozoite... 36 0.31 3
(EX747613) RR1C259TF RR1(CS) Raphanus raphanistrum subsp. ma... 42 0.32 2
(AM547749) Paracentrotus lividus EST, clone MPMGp1171C13104Q... 28 0.33 3
(DT468774) GH_CHX22G20.r GH_CHX Gossypium hirsutum cDNA clon... 40 0.35 2
(EY950027) RS3E762TF RS3(RT) Raphanus sativus cDNA 5', mRNA ... 30 0.36 3
(FJ032290) Hydrangea macrophylla clone STAB339_340 microsate... 36 0.37 2
(DY893370) CeleSEQ12694 Cunninghamella elegans pBluescript (... 36 0.37 2
(AC161690) Bos taurus clone CH240-108P1, WORKING DRAFT SEQUE... 46 0.37 2
(DY889958) CeleSEQ6954 Cunninghamella elegans pBluescript (E... 38 0.40 2
(EF371451) Gentiana crassicaulis clone Gcr186 microsatellite... 36 0.43 2
(AC160013) Medicago truncatula clone mth2-162b23, complete s... 42 0.51 6
(AM462348) Vitis vinifera contig VV78X277362.10, whole genom... 46 0.51 1
(AL844509) Plasmodium falciparum chromosome 13. 46 0.51 1
(AL049185) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 46 0.51 1
(AC184245) Strongylocentrotus purpuratus clone R3-3003K16, W... 46 0.51 1
(AC179532) Strongylocentrotus purpuratus clone R3-6F17, WORK... 46 0.51 1
(AC179221) Strongylocentrotus purpuratus clone R3-41E14, WOR... 46 0.51 1
(CT242303) Sus scrofa genomic clone PigE-3F17, genomic surve... 46 0.51 1
(EE375372) LB03056.CR_P12 GC_BGC-30 Bos taurus cDNA clone IM... 30 0.56 3
(AX827172) Sequence 7 from Patent WO03074714. 36 0.56 2
(BT025724) Arabidopsis thaliana At3g53310 mRNA, complete cds. 30 0.57 3
(AP009566) Lotus japonicus genomic DNA, chromosome 2, clone:... 32 0.58 6
(FG160433) AGN_RNC020xl01r1.ab1 AGN_RNC Nicotiana tabacum cD... 30 0.58 3
(DC198792) Plasmodium berghei cDNA clone:LV008618, liver sta... 36 0.59 2
(BH153606) ENTTS83TF Entamoeba histolytica Sheared DNA Entam... 30 0.63 3
(CX692727) yde97d03.y1 Sea urchin EST Lib1 Strongylocentrotu... 36 0.64 2
(CX693846) ydc86h12.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.64 2
(BJ373216) Dictyostelium discoideum cDNA clone:ddc2a07, 3' e... 36 0.67 2
(FL904333) CCGO2001.g1 CCGO Panicum virgatum root (H) Panicu... 38 0.68 2
(BJ381683) Dictyostelium discoideum cDNA clone:ddc42g10, 3' ... 36 0.68 2
(GC505079) Sequence 30 from patent US 7402395. 36 0.70 2
(EA267224) Sequence 30 from patent US 7244410. 36 0.70 2
(DJ381309) NOVEL LOW DENSITY LIPOPROTEIN BINDING PROTEINS AN... 36 0.70 2
(BD056452) Novel low density lipoprotein binding proteins an... 36 0.70 2
(AX239587) Sequence 30 from Patent WO0164874. 36 0.70 2
(AR650957) Sequence 30 from patent US 6878817. 36 0.70 2
(AR409325) Sequence 30 from patent US 6632923. 36 0.70 2
(AR374690) Sequence 30 from patent US 6605588. 36 0.70 2
(AR199538) Sequence 30 from patent US 6355451. 36 0.70 2
(EX522003) ALF(R)-19_2007-08-09_1/ALF(R)-19_O12_017_1 Alfalf... 32 0.72 3
(FL904332) CCGO2001.b1 CCGO Panicum virgatum root (H) Panicu... 38 0.73 2
(EL495443) E08_PFBAMHI-M-T7-PLATE9A.AB1 Blood stage Plasmodi... 40 0.74 2
(AW776776) EST335841 DSIL Medicago truncatula cDNA clone pDS... 42 0.76 2
(BJ444271) Dictyostelium discoideum cDNA clone:ddv55g24, 3' ... 28 0.76 3
(EL898236) CGF2002784_F12 WRN-02: Walnut root infected with... 30 0.77 3
(BB974670) Plasmodium berghei str. ANKA cDNA clone: OK004482... 36 0.84 2
(BX823050) Arabidopsis thaliana Full-length cDNA Complete se... 30 0.86 3
(DL429837) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS. 38 0.86 2
(DJ296286) Method for identification of useful proteins deri... 38 0.86 2
(FL890001) CCGN8623.g1 CCGN Panicum virgatum etiolated seedl... 38 0.86 2
(CF075839) Hd_mx17_60F11_T7 Hypsibius dujardini mixed stage ... 40 0.92 2
(CX681855) ydc59b04.y2 Sea urchin EST Lib1 Strongylocentrotu... 36 0.92 2
(DV681437) CGN-20677 Seed of Middle Development Stage Coffea... 34 0.97 3
(J03998) Plasmodium falciparum glutamic acid-rich protein ge... 36 0.98 2
(CA991259) EST644767 GESD Medicago truncatula cDNA clone GES... 42 0.99 2
(DV674909) CGN-11655 Seed of Middle Development Stage Coffea... 34 0.99 3
(DV680153) CGN-18650 Seed of Middle Development Stage Coffea... 34 1.00 3
(AY087586) Arabidopsis thaliana clone 36830 mRNA, complete s... 30 1.00 3
(BW720358) Branchiostoma floridae cDNA, adult clone:bfad005o... 38 1.0 2
(BF295923) 030PbA09 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ... 36 1.0 2
(FL947785) CCGP15306.g1 CCGP Panicum virgatum root (L) Panic... 38 1.0 2
(FL947784) CCGP15306.b1 CCGP Panicum virgatum root (L) Panic... 38 1.0 2
(BJ402500) Dictyostelium discoideum cDNA clone:dds17k04, 3' ... 36 1.0 2
(AW690322) NF029D12ST1F1000 Developing stem Medicago truncat... 36 1.0 2
(DC219487) Plasmodium berghei strain ANKA cDNA clone:MZ00114... 36 1.0 2
(AC233660) Medicago truncatula chromosome 1, pooled multiple... 32 1.0 2
(CU468069) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.0 2
(CU463342) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.1 2
(AC201216) Strongylocentrotus purpuratus clone R3-15E5, WORK... 34 1.1 2
(AC181450) Strongylocentrotus purpuratus clone R3-51A7, WORK... 34 1.1 2
(AC202492) Medicago truncatula clone mth2-18i9, WORKING DRAF... 32 1.1 2
(BQ148673) NF080D07FL1F1062 Developing flower Medicago trunc... 42 1.1 2
(BB978024) Plasmodium berghei str. ANKA cDNA clone: OK008032... 36 1.1 2
(AC174340) Medicago truncatula clone mth2-161g1, complete se... 32 1.1 2
(AQ961695) LERGA80TR LERG Arabidopsis thaliana genomic clone... 36 1.1 2
(AC126780) Medicago truncatula chromosome 8 clone mth2-10n4,... 32 1.1 2
(EV257532) MTYD948TF JCVI-MT1 Medicago truncatula cDNA 5', m... 42 1.1 2
(AQ961694) LERGA80TF LERG Arabidopsis thaliana genomic clone... 36 1.1 2
(CR931733) Medicago truncatula chromosome 5 clone mth2-38a4... 32 1.1 2
(AC146914) Medicago truncatula chromosome 8 clone mth2-57l14... 32 1.1 2
(AC136839) Medicago truncatula chromosome 8 clone mth2-13n2,... 32 1.1 2
(BW701569) Branchiostoma floridae cDNA, adult clone:bfad005o... 38 1.1 2
(BF644868) NF023D11EC1F1093 Elicited cell culture Medicago t... 42 1.1 2
(BJ425070) Dictyostelium discoideum cDNA clone:ddv54d15, 5' ... 28 1.1 3
(ES218095) MpFVN_ag2_M17 Myzus persicae, line F001, PLRV fre... 36 1.1 2
(AU034636) Dictyostelium discoideum slug cDNA, clone SLC669. 36 1.2 2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 40 1.2 6
(BM168034) EST570557 PyBS Plasmodium yoelii yoelii cDNA clon... 28 1.2 3
(BF299275) 066PbE04 Pb cDNA #20, Charles Yowell and Jane Car... 36 1.2 2
(BF295312) 022PbA04 Pb cDNA #17, Tommaso Pace, Marta Ponzi, ... 36 1.2 2
(FH650972) CHO_OF4397xm19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 1.2 2
(BX822775) Arabidopsis thaliana Full-length cDNA Complete se... 30 1.2 3
(FL890000) CCGN8623.b1 CCGN Panicum virgatum etiolated seedl... 38 1.2 2
(CA990910) EST644418 GESD Medicago truncatula cDNA clone GES... 42 1.2 2
(CB894831) EST647623 HOGA Medicago truncatula cDNA clone HOG... 42 1.2 2
(DN172168) LH__Ea10C04.r LH__Ea Solanum habrochaites cDNA cl... 38 1.2 2
(BP136754) Nicotiana tabacum cDNA, clone: BY9371, primer: M1... 36 1.2 2
(EE261114) H06_H06ff1d12_pDNRf_501315 Myzus persicae, line F... 40 1.2 2
(DN172167) LH__Ea10C04.f LH__Ea Solanum habrochaites cDNA cl... 38 1.2 2
(CA918599) EST642746 GESD Medicago truncatula cDNA clone GES... 42 1.2 2
(EY181451) CBTI8174.b1_L03.ab1:P Triphysaria pusilla root ti... 36 1.2 2
(DC219349) Plasmodium berghei strain ANKA cDNA clone:MZ00090... 36 1.2 2
(DC222988) Plasmodium berghei strain ANKA cDNA clone:MZ00673... 36 1.3 2
(BB971581) Plasmodium berghei str. ANKA cDNA clone: OK001255... 36 1.3 2
(FC748248) CBBI3790.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 36 1.3 2
(DT458626) GH_ON36H01.f GH_ON Gossypium hirsutum cDNA clone ... 30 1.3 3
(FL867824) CCGI10562.g1 CCGI Panicum virgatum etiolated seed... 38 1.3 2
(FL762832) CCGC11470.b1 CCGC Panicum virgatum early floral b... 38 1.3 2
(FH981610) CHO_OF6829xb08r1.ab1 CHO_OF6 Nicotiana tabacum ge... 36 1.3 2
(EA107931) Sequence 1703 from patent US 7196245. 42 1.3 2
(CA991262) EST644770 GESD Medicago truncatula cDNA clone GES... 42 1.3 2
(EV258616) MTYDM41TF JCVI-MT1 Medicago truncatula cDNA 5', m... 42 1.3 2
(EY933325) RS1E750TF RS1(AR) Raphanus sativus var. oleiformi... 36 1.3 3
(FH651014) CHO_OF4397xm19f2.ab1 CHO_OF4 Nicotiana tabacum ge... 36 1.3 2
(FH651072) CHO_OF4397xm19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 1.3 2
(FI020125) CHO_OF6926xb06f1.ab1 CHO_OF6 Nicotiana tabacum ge... 36 1.3 2
(BG785721) SEAUMC005678 Sea urchin primary mesenchyme cell c... 36 1.3 2
(DR282042) 6634909 CERES-AL46 Arabidopsis thaliana cDNA clon... 38 1.4 2
(CT068345) Sus scrofa genomic clone PigE-255I20, genomic sur... 34 1.4 2
(CB894280) EST647072 HOGA Medicago truncatula cDNA clone HOG... 42 1.4 2
(FH434702) CHO_OF4980xc12r1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 1.4 2
(DT876684) AGENCOURT_58670633 NIH_ZGC_9 Danio rerio cDNA clo... 36 1.4 2
(CB893520) EST646312 HOGA Medicago truncatula cDNA clone HOG... 42 1.4 2
(FH651143) CHO_OF4397xm19r2.ab1 CHO_OF4 Nicotiana tabacum ge... 36 1.4 2
(CO923563) AGENCOURT_30540717 NIH_ZGC_19 Danio rerio cDNA cl... 36 1.4 2
(CN502179) AGENCOURT_22826901 NIH_ZGC_9 Danio rerio cDNA clo... 36 1.4 2
(CO926635) AGENCOURT_30541742 NIH_ZGC_19 Danio rerio cDNA cl... 36 1.5 2
(BM166822) EST569345 PyBS Plasmodium yoelii yoelii cDNA clon... 30 1.5 3
(GE031230) 454GmaGlobSeed773878 Soybean Seeds Containing Glo... 28 1.5 3
(DN561995) 87602129 Sea Urchin primary mesenchyme cell cDNA ... 36 1.6 2
(BB929459) Trifolium pratense cDNA clone:RCC00894. 38 1.6 2
(CU436060) Clytia hemisphaerica 5-PRIME EST from clone SA0AA... 30 1.6 3
(DN789048) 93849506 Sea Urchin primary mesenchyme cell cDNA ... 36 1.6 2
(GC505080) Sequence 31 from patent US 7402395. 36 1.6 2
(EA267225) Sequence 31 from patent US 7244410. 36 1.6 2
(DJ381310) NOVEL LOW DENSITY LIPOPROTEIN BINDING PROTEINS AN... 36 1.6 2
(BD056453) Novel low density lipoprotein binding proteins an... 36 1.6 2
(AX239588) Sequence 31 from Patent WO0164874. 36 1.6 2
(AR650958) Sequence 31 from patent US 6878817. 36 1.6 2
(AR409326) Sequence 31 from patent US 6632923. 36 1.6 2
(AR374691) Sequence 31 from patent US 6605588. 36 1.6 2
(AR199539) Sequence 31 from patent US 6355451. 36 1.6 2
(BE694959) RC6-BT0777-240500-011-B09 BT0777 Homo sapiens cDN... 32 1.6 2
(DN785717) 90937811 Sea Urchin primary mesenchyme cell cDNA ... 36 1.6 2
(EY928829) RS1E750JQ RS1(AR) Raphanus sativus var. oleiformi... 36 1.7 3
(DY924930) CHAY8044.b1_H20.ab1 CHA(XYZ) common wild sunflowe... 28 1.7 3
(BE695035) RC6-BT0777-280600-013-B01 BT0777 Homo sapiens cDN... 32 1.7 2
(AV821426) Arabidopsis thaliana cDNA clone:RAFL04-10-B18, 5'... 38 1.7 2
(DL429608) METHODS FOR ANALYZING GENES OF INDUSTRIAL YEASTS. 36 1.7 2
(DJ296057) Method for identification of useful proteins deri... 36 1.7 2
(DN783887) 90179862 Sea Urchin primary mesenchyme cell cDNA ... 36 1.7 2
(EL428367) CHCM7649.b1_B18.ab1 CHC(LMS) Texas blueweed Helia... 32 1.7 3
(BF332903) RC6-BT0777-240500-011-G08 BT0777 Homo sapiens cDN... 32 1.7 2
(FG372405) CBHF6883.fwd CBHF Trichoderma virens strain Gv29-... 36 1.7 3
(BE694969) RC6-BT0777-240500-011-F08 BT0777 Homo sapiens cDN... 32 1.8 2
(AZ535744) ENTCQ25TR Entamoeba histolytica Sheared DNA Entam... 28 1.8 3
(CX195150) 12-E022904-021-018-H03-frev ADIS-MPIZ 021 Brassic... 30 1.9 3
(AB005247) Arabidopsis thaliana genomic DNA, chromosome 5, P... 36 1.9 2
(BT051898) Medicago truncatula clone MTYF5_F6_F7_F81G-E-22 u... 42 1.9 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 1.9 7
(AZ551618) ENTDV54TR Entamoeba histolytica Sheared DNA Entam... 30 1.9 3
(BT052172) Medicago truncatula clone MTYF9_FA_FB_FC1G-K-15 u... 42 2.0 2
(AL671782) Mouse DNA sequence from clone RP23-102I3 on chrom... 44 2.0 1
(FM992689) Candida dubliniensis CD36 chromosome 2, complete ... 44 2.0 1
(AM270409) Aspergillus niger contig An18c0170, complete genome. 44 2.0 1
(CR956648) Pig DNA sequence from clone CH242-155F23 on chrom... 44 2.0 1
(AC090138) Homo sapiens, clone RP11-63C8, complete sequence. 44 2.0 1
(FP236137) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.0 1
(AC027608) Homo sapiens chromosome 8 clone RP11-63C8, WORKIN... 44 2.0 1
(AC182059) Bos taurus clone CH240-343P8, WORKING DRAFT SEQUE... 44 2.0 1
(EK394944) 1095469517078 Global-Ocean-Sampling_GS-31-01-01-1... 44 2.0 1
(EK357046) 1095468621510 Global-Ocean-Sampling_GS-31-01-01-1... 44 2.0 1
(EJ759024) 1092963109456 Global-Ocean-Sampling_GS-30-02-01-1... 44 2.0 1
(DV122507) CV03033X1A01.f1 CV03-normalized library Euphorbia... 44 2.0 1
(AM958286) Sparus aurata EST, clone cDN04P0004I16, 5'-end se... 44 2.0 1
(CB971724) CAB10005_Ia_Ra_B02 Cabernet Sauvignon Flower Pre-... 44 2.0 1
(BJ942688) Physcomitrella patens subsp. patens cDNA clone:pp... 44 2.0 1
(BJ203545) Physcomitrella patens subsp. patens cDNA clone:pp... 44 2.0 1
(BJ200578) Physcomitrella patens subsp. patens cDNA clone:pp... 44 2.0 1
(BJ200263) Physcomitrella patens subsp. patens cDNA clone:pp... 44 2.0 1
(BJ198924) Physcomitrella patens subsp. patens cDNA clone:pp... 44 2.0 1
(BJ186959) Physcomitrella patens subsp. patens cDNA clone:pp... 44 2.0 1
(BJ159899) Physcomitrella patens subsp. patens cDNA clone:pp... 44 2.0 1
(EY244868) CATY4465.rev CATY Aspergillus niger fungal filame... 44 2.0 1
(EY100603) CAZI24845.rev CAZI Artemisia annua normalized lea... 44 2.0 1
(CU207211) Herminiimonas arsenicoxydans chromosome, complete... 44 2.0 1
(BM169710) EST572233 PyBS Plasmodium yoelii yoelii cDNA clon... 32 2.1 3
(BG201182) RST20510 Athersys RAGE Library Homo sapiens cDNA,... 32 2.1 2
(ES543143) Kr_K05_03I17_attB1_seq K05 Euphausia superba cDNA... 36 2.1 2
(DY926122) CHAY9644.b1_G11.ab1 CHA(XYZ) common wild sunflowe... 28 2.1 3
(AZ531291) ENTBQ34TR Entamoeba histolytica Sheared DNA Entam... 30 2.1 3
(BH146886) ENTPK48TF Entamoeba histolytica Sheared DNA Entam... 28 2.1 3
(AZ683582) ENTKK47TR Entamoeba histolytica Sheared DNA Entam... 28 2.2 3
(ES543412) Kr_K06_02J17_attB1_seq K06 Euphausia superba cDNA... 24 2.2 4
(AW720069) LjNEST13d1r Lotus japonicus nodule library 5 and ... 36 2.2 2
(AZ549980) ENTDD94TF Entamoeba histolytica Sheared DNA Entam... 34 2.2 3
(AZ548467) ENTEK30TR Entamoeba histolytica Sheared DNA Entam... 30 2.2 3
(AZ551092) ENTFJ22TF Entamoeba histolytica Sheared DNA Entam... 30 2.2 3
(R68358) yh99c02.r1 Soares placenta Nb2HP Homo sapiens cDNA ... 32 2.2 2
(BH160272) ENTQV49TR Entamoeba histolytica Sheared DNA Entam... 28 2.3 3
(DT615881) ACAH-aab12h02.g1 Hydra_EST_UCI-10 Hydra magnipapi... 30 2.4 3
(AP010939) Solanum lycopersicum DNA, chromosome 8, clone: C0... 36 2.4 3
(BD135994) Secretory proteins and polynucleotides encoding t... 34 2.5 2
(BP828982) Arabidopsis thaliana cDNA clone:RAFL22-80-J17, 5'... 38 2.5 2
(CN299736) 17000424182017 GRN_EB Homo sapiens cDNA 5', mRNA ... 32 2.5 2
(BQ858872) QGC11H15.yg.ab1 QG_ABCDI lettuce salinas Lactuca ... 36 2.5 2
(CK423615) AUF_IpSpn_68_m03 Spleen cDNA library Ictalurus pu... 30 2.5 3
(BM806532) AGENCOURT_6542805 NIH_MGC_72 Homo sapiens cDNA cl... 34 2.6 3
(AA126375) zl86c06.r1 Stratagene colon (#937204) Homo sapien... 32 2.6 2
(DY960067) CLSL2633.b1_B12.ab1 CLS(LMS) lettuce sativa Lactu... 36 2.6 2
(FG467751) 011204KAKA004172HT (KAKA) Dormant kiwifruit buds ... 36 2.6 2
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 34 2.7 5
(EX039223) BR023867 floral bud cDNA library KBFL Brassica ra... 36 2.7 2
(FE818841) CCAG34389.g1 CCAG Petrolisthes cinctipes heart, g... 36 2.7 2
(AW803106) IL2-UM0077-260400-079-A02 UM0077 Homo sapiens cDN... 32 2.8 2
(AC174009) Strongylocentrotus purpuratus clone R3-30M4, WORK... 36 2.8 2
(AW364813) PM1-DT0041-281299-001-h03 DT0041 Homo sapiens cDN... 32 2.8 2
(FE937590) AHAI-aaa59a12.b2 Pristionchus_pacificus_AHAI1_EST... 36 2.9 2
(BJ431690) Dictyostelium discoideum cDNA clone:ddv15j02, 3' ... 28 2.9 3
(AU262376) Dictyostelium discoideum vegetative cDNA clone:VS... 38 2.9 2
(CD117607) ME1-0043T-M214-D01-U.G ME1-0043 Schistosoma manso... 36 2.9 2
(BJ440854) Dictyostelium discoideum cDNA clone:ddv44n22, 3' ... 28 2.9 3
(DR282043) 5789639 CERES-AL45 Arabidopsis thaliana cDNA clon... 38 2.9 2
(AV550738) Arabidopsis thaliana cDNA clone:RZ116f04R, 5' end. 38 2.9 2
(AW364815) PM1-DT0041-281299-001-h09 DT0041 Homo sapiens cDN... 32 2.9 2
(AK121847) Oryza sativa Japonica Group cDNA clone:J033101J24... 34 3.0 3
(BJ445981) Dictyostelium discoideum cDNA clone:ddv61c08, 3' ... 28 3.0 3
(AU239169) Arabidopsis thaliana cDNA clone:RAFL19-59-D11, 5'... 38 3.0 2
(BW596249) Lotus japonicus cDNA, clone: LjCa-007-AF12, 5' en... 38 3.0 2
(CD185926) MS1-0053T-L289-C03-U.B MS1-0053 Schistosoma manso... 36 3.0 2
(DR282045) 37036 CERES-147 Arabidopsis thaliana cDNA clone 2... 38 3.0 2
(CF186559) j4o01j2.f1 Cryptococcus neoformans strain B3501 C... 36 3.1 2
(BW627707) Lotus japonicus cDNA, clone: LjFL2-018-CB12, 5' e... 36 3.1 2
(DR282044) 5741269 CERES-AL46 Arabidopsis thaliana cDNA clon... 38 3.1 2
(BW594449) Lotus japonicus cDNA, clone: LjCa-001-CA03, 5' en... 38 3.1 2
(AC116925) Dictyostelium discoideum chromosome 2 map 4189423... 36 3.1 3
(DY970212) CLSM3355.b1_E24.ab1 CLS(LMS) lettuce sativa Lactu... 36 3.1 2
(DY945679) CHPY14012.b1_H23.ab1 CHP(XYZ) plains sunflower He... 36 3.1 2
(BW594967) Lotus japonicus cDNA, clone: LjCa-003-AF06, 5' en... 36 3.1 2
(AX831536) Sequence 2256 from Patent WO03072602. 38 3.1 2
(AX820506) Sequence 2256 from Patent EP1338608. 38 3.1 2
(AX596196) Sequence 1850 from Patent EP1258494. 38 3.1 2
(GD032356) CCHZ16561.g1 CCHZ Panicum virgatum abiotic and bi... 38 3.1 2
(DN916235) MCF7RNAL21G18TR Human MCF7 breast cancer cell lin... 32 3.1 2
(EG560342) CR03016B06 Root CR03 cDNA library Catharanthus ro... 38 3.1 2
(EB836069) 6916465 KZ58 Danio rerio cDNA clone 2607919, mRNA... 28 3.2 3
(BM795899) K-EST0078345 S22SNU16n1 Homo sapiens cDNA clone S... 32 3.2 2
(DR282046) 6626075 CERES-AL45 Arabidopsis thaliana cDNA clon... 38 3.2 2
(BM745334) K-EST0019182 S7SNU719 Homo sapiens cDNA clone S7S... 32 3.2 2
(AV525327) Arabidopsis thaliana cDNA clone:APD22b05R, 5' end. 38 3.2 2
(AJ796593) Antirrhinum majus EST, clone 018_3_11_g21. 34 3.3 2
(FP214522) Danio rerio EST, clone ZF_invA66i10 5'. 28 3.3 3
(BV729551) MPGD35 Foxtail millet genomic SSR sequence Setari... 36 3.3 2
(CD185693) MS1-0053T-L278-D02-U.B MS1-0053 Schistosoma manso... 36 3.3 2
(BI417856) LjNEST37h10r Lotus japonicus nodule library 5 and... 36 3.4 2
(BI417355) LjNEST38c2r Lotus japonicus nodule library 5 and ... 36 3.4 2
(CG845047) PUAAA15TFB ZM_0.6_1.0_KB Zea mays genomic clone Z... 34 3.4 2
(EL924464) NY4Th2_128_G04.b1_A039 NY4 theronts Ichthyophthir... 36 3.4 2
(AW937831) QV3-DT0045-010300-108-f11 DT0045 Homo sapiens cDN... 32 3.4 2
(BM160063) EST562586 PyBS Plasmodium yoelii yoelii cDNA clon... 30 3.4 3
(BM707999) UI-E-CI1-afv-c-03-0-UI.r1 UI-E-CI1 Homo sapiens c... 32 3.4 2
(DC303945) Homo sapiens cDNA, clone BRACE2021077, 5' end, mR... 32 3.4 2
(BJ440883) Dictyostelium discoideum cDNA clone:ddv45d01, 3' ... 38 3.5 2
(BM743049) K-EST0016120 S7SNU719 Homo sapiens cDNA clone S7S... 32 3.5 2
(GO025883) LJMBZ20TFB JCVI-LJ2 Lotus japonicus cDNA 5', mRNA... 36 3.5 2
(GE766127) LE_MX1_38H01_SP6 Skate Multiple Tissues, Normaliz... 34 3.5 2
(CB828239) LjNEST84d3r Lotus japonicus nodule library 5 and ... 36 3.6 2
(FG467698) 011204KAKA004100HT (KAKA) Dormant kiwifruit buds ... 36 3.6 2
(CR999099) RZPD Homo sapiens cDNA expression clone RZPDp9016... 32 3.6 2
(DA125586) Homo sapiens cDNA clone BRACE3048347, 5' end, mRN... 32 3.6 2
(CK902324) il47d03.x5 HR85 islet Homo sapiens cDNA clone IMA... 32 3.6 2
(CU407282) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 3.6 3
(CF142051) UI-HF-CB0-aqd-e-06-0-UI.r1 NIH_MGC_210 Homo sapie... 32 3.6 2
(BP208592) Homo sapiens cDNA clone: CBL01485, Sugano cDNA li... 32 3.6 2
(EG339296) KAAN-aaa12a12.b1 Platypus_EST_Cell_line_1.0-4.0kb... 36 3.6 2
(DB168029) Homo sapiens cDNA clone TKIDN2001684, 5' end, mRN... 32 3.6 2
(BP215247) Homo sapiens cDNA clone: CCR03375, Sugano cDNA li... 32 3.6 2
(BP193015) Homo sapiens cDNA clone: ADB01076, Sugano cDNA li... 32 3.6 2
(DN409586) LIB4007-021-Q1-K1-A12 LIB4007 Canis lupus familia... 38 3.7 2
(CZ065043) OM__Ba0063K04.r OM__Ba Oryza minuta genomic clone... 36 3.7 2
(CD149010) ML1-0014T-R273-D09-U.G ML1-0014 Schistosoma manso... 36 3.7 2
(BU663331) cl99e10.z1 Hembase; Erythroid Precursor Cells (LC... 32 3.7 2
(BP307765) Homo sapiens cDNA clone: NRB02639, Sugano cDNA li... 32 3.7 2
(BP307188) Homo sapiens cDNA clone: NRB00219, Sugano cDNA li... 32 3.7 2
(FH377007) CHO_OF4607xl10r1.ab1 CHO_OF4 Nicotiana tabacum ge... 38 3.7 2
(EH739275) CNMS12656.b1_P20.ab1 CNM(LMS) spotted knapweed Ce... 38 3.7 2
(DN401876) LIB4004-019-Q1-K1-C8 LIB4004 Canis lupus familiar... 38 3.7 2
(DD003644) Human Genes And Gene Expression Products. 32 3.8 2
(AX385195) Sequence 123 from Patent WO0214500. 32 3.8 2
(AC151063) Bos taurus clone CH240-496O19, WORKING DRAFT SEQU... 32 3.8 2
(CX171294) F12_69-102_12.ab1 leaf inoculated with Marssonia ... 36 3.8 2
(FP017207) Medicago truncatula chromosome 5 clone mth4-14b12... 32 3.8 2
(AC177978) Strongylocentrotus purpuratus clone R3-3051E6, WO... 32 3.8 2
(AL872625) Xenopus tropicalis EST, clone TEgg119a06 5'. 36 3.9 2
(GH270025) LE_MX1_62F06_SP6 Skate Multiple Tissues, Normaliz... 34 3.9 2
(CD694359) EST10882 human nasopharynx Homo sapiens cDNA, mRN... 32 3.9 2
(AL777165) Xenopus tropicalis EST, clone TGas081d23 5'. 36 3.9 2
(AC181137) Strongylocentrotus purpuratus clone R3-16F9, WORK... 34 3.9 2
(DY841520) CTOZ7991.b1_N06.ab1 CTO(XYZ) dandelion Taraxacum ... 38 3.9 2
(EH746415) CNMS5914.b1_D15.ab1 CNM(LMS) spotted knapweed Cen... 38 3.9 2
(AC149303) Medicago truncatula clone mth2-76a20, complete se... 32 3.9 2
(AC119415) Medicago truncatula clone mth2-27n2, complete seq... 32 3.9 2
(BQ777383) il47d03.y1 HR85 islet Homo sapiens cDNA clone IMA... 32 3.9 2
(GH547232) LE_MX1_69E08_SP6 Skate Multiple Tissues, Normaliz... 34 3.9 2
(BJ405844) Dictyostelium discoideum cDNA clone:dds33p04, 3' ... 38 3.9 2
(AC126789) Medicago truncatula clone mth2-36n23, complete se... 32 3.9 2
(BM793909) K-EST0074896 S22SNU16n1 Homo sapiens cDNA clone S... 32 3.9 2
(AC144344) Medicago truncatula chromosome 6 clone mth2-8c18,... 32 3.9 2
(FG467918) 011204KAKA004416HT (KAKA) Dormant kiwifruit buds ... 36 4.0 2
(AC232401) Brassica rapa subsp. pekinensis clone KBrH061D04,... 38 4.0 3
(BI480817) H2RPE-0474 Human Retinal Pigment Epithelium (2) H... 32 4.0 2
(AC202269) Medicago truncatula chromosome 6 clone mth2-103i1... 32 4.0 2
(BM300587) MCA054C05_21544 Ice plant Lambda Uni-Zap XR expre... 36 4.0 2
(EE992059) Le_emtis_404C06_M13R29 Little skate (Leucoraja er... 34 4.0 2
(BJ397797) Dictyostelium discoideum cDNA clone:dds47k18, 5' ... 34 4.0 3
(FG467775) 011204KAKA004216HT (KAKA) Dormant kiwifruit buds ... 36 4.0 2
(BU665225) cl128d06.z1 Hembase; Erythroid Precursor Cells (L... 32 4.0 2
(BI549235) 603189853F1 NIH_MGC_95 Homo sapiens cDNA clone IM... 32 4.0 2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 34 4.0 6
(BM769992) K-EST0053360 S14K402 Homo sapiens cDNA clone S14K... 32 4.0 2
(BI551590) 603194239F1 NIH_MGC_95 Homo sapiens cDNA clone IM... 32 4.0 2
(CN825645) LjPEST9a10 Lotus japonicus seed and seed pod libr... 36 4.0 2
(BG546697) 602574560F1 NIH_MGC_77 Homo sapiens cDNA clone IM... 32 4.0 2
(AU269535) Dictyostelium discoideum vegetative cDNA clone:VS... 36 4.0 2
(CX177241) F03_69-101_11.ab1 leaf inoculated with Marssonia ... 36 4.1 2
(DR282048) 12824298 CERES-AN65 Arabidopsis thaliana cDNA clo... 38 4.1 2
(CO713579) DG14-208n13 DG14-muscle Canis lupus familiaris cD... 38 4.1 2
(BJ357016) Dictyostelium discoideum cDNA clone:dda62n03, 3' ... 38 4.1 2
(GE394568) 293776508 Nasonia vitripennis Female Pupae Nasoni... 36 4.1 2
(BQ594138) E012758-024-025-K24-SP6 MPIZ-ADIS-024-developing ... 30 4.1 3
(FG908424) UCRVU08_CCNS5708_g1 Cowpea IT97K-461-4 Mixed Tiss... 30 4.1 3
(FP124243) Danio rerio EST, clone ZF_invB42e07 5'. 28 4.1 3
(DW107615) CLRX5113.b1_B07.ab1 CLR(XYZ) lettuce serriola Lac... 36 4.1 2
(BG496430) 602538033F1 NIH_MGC_59 Homo sapiens cDNA clone IM... 32 4.1 2
(BG612249) 602613745F1 NIH_MGC_60 Homo sapiens cDNA clone IM... 32 4.1 2
(FF597593) Le_emcl1_02G20_M13Reverse Little Skate (Leucoraja... 34 4.1 2
(FG908423) UCRVU08_CCNS5708_b1 Cowpea IT97K-461-4 Mixed Tiss... 30 4.1 3
(CD478237) eca01-34ms1-g12 Eca01 Eschscholzia californica cD... 38 4.2 2
(DW107829) CLRX5284.b1_H02.ab1 CLR(XYZ) lettuce serriola Lac... 36 4.2 2
(BP796784) Arabidopsis thaliana cDNA clone:RAFL06-12-F12, 5'... 38 4.2 2
(EL735197) 12494 Full Length cDNA from the Mammalian Gene Co... 32 4.2 2
(BG701216) 602680667F1 NIH_MGC_95 Homo sapiens cDNA clone IM... 32 4.2 2
(DN918240) MCF7RNAL24J03TR Human MCF7 breast cancer cell lin... 32 4.2 2
(BE613823) 601504137F1 NIH_MGC_71 Homo sapiens cDNA clone IM... 32 4.2 2
(DY835405) CTOZ2150.b1_K10.ab1 CTO(XYZ) dandelion Taraxacum ... 38 4.3 2
(CZ281525) cp17e01.r Candida parapsilosis Random Genomic Lib... 36 4.3 2
(FG520341) 030505KAZB001534HT (KAZB) Actinidia chinensis you... 36 4.3 2
(GE365943) 292292716 Nasonia vitripennis Male Pupae Nasonia ... 36 4.4 2
(BZ082617) llf02e09.g1 B.oleracea002 Brassica oleracea genom... 34 4.4 2
(DV446140) CV01018A1C03.f1 CV01-normalized library Manihot e... 36 4.4 2
(BJ409435) Dictyostelium discoideum cDNA clone:dds41a20, 3' ... 38 4.4 2
(EH012770) USDA-FP_182164 Lysiphlebus testaceipes adult whol... 36 4.4 2
(FE653586) CBYZ10859.g1 CBYZ Panicum virgatum Kanlow 4 day o... 38 4.4 2
(DB615973) Halocynthia roretzi cDNA clone:mae44a19, 5' end. 36 4.5 2
(AV711305) Homo sapiens cDNA clone:CuAAOH10, 5'end, expresse... 32 4.5 2
(EH737552) CNMS11033.b1_A24.ab1 CNM(LMS) spotted knapweed Ce... 40 4.5 2
(CN825009) LjPEST1g6 Lotus japonicus seed and seed pod libra... 36 4.5 2
(BQ867133) QGC9O01.yg.ab1 QG_ABCDI lettuce salinas Lactuca s... 36 4.5 2
(EC376859) G840P39FC24.T0 Oscarella carmela pSport1 Library ... 36 4.5 2
(EE647945) CHEM7953.b1_A22.ab1 CHE(LMS) serpentine sunflower... 32 4.5 3
(BG706459) 602670009F1 NIH_MGC_96 Homo sapiens cDNA clone IM... 32 4.5 2
(FE653585) CBYZ10859.b1 CBYZ Panicum virgatum Kanlow 4 day o... 38 4.6 2
(FK222270) XABT224921.b1 Gateway compatible cien cDNA librar... 36 4.6 2
(GO027280) LJMA950TO JCVI-LJ2 Lotus japonicus cDNA 3', mRNA ... 36 4.6 2
(BZ634174) PUAAF70TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 34 4.6 2
(BG205882) RST25317 Athersys RAGE Library Homo sapiens cDNA,... 32 4.6 2
(AJ779649) Populus euphratica EST, clone P0000800005A03F1. 28 4.6 3
(GO035004) LJNAN41TF JCVI-LJ3 Lotus japonicus cDNA 5', mRNA ... 38 4.6 2
(BG716254) 602677793F1 NIH_MGC_96 Homo sapiens cDNA clone IM... 32 4.6 2
(BE614431) 601504137T1 NIH_MGC_71 Homo sapiens cDNA clone IM... 32 4.6 2
(BG209588) RST29114 Athersys RAGE Library Homo sapiens cDNA,... 32 4.7 2
(FE237830) CAPG456.rev CAPG Naegleria gruberi amoeba stage N... 38 4.7 2
(DU987439) KBrH080E16R KBrH (HindIII) BAC library Brassica r... 36 4.7 2
(CX584532) TTE00020036 Amplicon Express - Conjugative Form T... 34 4.7 2
(BZ634615) PUAAA15TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 34 4.7 2
(BZ634618) PUAAA15TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 34 4.7 2
(FH159606) CHO_OF3156xg16f1.ab1 CHO_OF3 Nicotiana tabacum ge... 38 4.7 2
(EY448209) CBAZ2025.fwd CBAZ Tubifex tubifex Embryos and juv... 36 4.7 2
(FE237988) CAPG4637.fwd CAPG Naegleria gruberi amoeba stage ... 30 4.7 3
(EF058907) Synthetic construct Saccharomyces cerevisiae clon... 38 4.7 2
(DY830410) CTOY5991.b1_M10.ab1 CTO(XYZ) dandelion Taraxacum ... 38 4.7 2
(BG722831) 602695302F1 NIH_MGC_97 Homo sapiens cDNA clone IM... 32 4.7 2
(FE818840) CCAG34389.b1 CCAG Petrolisthes cinctipes heart, g... 36 4.7 2
(BE504871) hz33g05.x1 NCI_CGAP_GC6 Homo sapiens cDNA clone I... 36 4.7 2
(BQ869965) QGD7L12.yg.ab1 QG_ABCDI lettuce salinas Lactuca s... 36 4.8 2
(FC734886) CBBG9282.fwd CBBG Lottia gigantea 12,15,18h embry... 38 4.8 2
(FL969800) CCHY9342.g1 CCHY Panicum virgatum callus (N) Pani... 38 4.8 2
(BG705749) 602668986F1 NIH_MGC_96 Homo sapiens cDNA clone IM... 32 4.8 2
(FK225129) XABT227193.b1 Gateway compatible cien cDNA librar... 36 4.8 2
(BJ353188) Dictyostelium discoideum cDNA clone:dda49d09, 3' ... 38 4.8 2
(EV258494) MTYDL02TF JCVI-MT1 Medicago truncatula cDNA 5', m... 36 4.8 2
(GO004920) LJGA134TF JCVI-LJ1 Lotus japonicus cDNA 5', mRNA ... 38 4.8 2
(BF216741) 601884658F1 NIH_MGC_57 Homo sapiens cDNA clone IM... 32 4.8 2
(FL784924) CCGF13481.b1 CCGF Panicum virgatum early floral b... 38 4.8 2
(AA481545) aa35g06.s1 NCI_CGAP_GCB1 Homo sapiens cDNA clone ... 36 4.8 2
(BJ405435) Dictyostelium discoideum cDNA clone:dds31l17, 3' ... 32 4.9 3
(DY973555) CLSM7249.b1_B14.ab1 CLS(LMS) lettuce sativa Lactu... 36 4.9 2
(BG742904) 602632487F1 NCI_CGAP_Skn3 Homo sapiens cDNA clone... 32 4.9 2
(BG187261) RST6249 Athersys RAGE Library Homo sapiens cDNA, ... 32 4.9 2
(BG195055) RST14232 Athersys RAGE Library Homo sapiens cDNA,... 32 4.9 2
(AC176057) Strongylocentrotus purpuratus clone R3-3024F12, W... 32 4.9 5
(FC700998) CAXX9044.fwd CAXX Lottia gigantea from male gonad... 38 4.9 2
(BG197075) RST16312 Athersys RAGE Library Homo sapiens cDNA,... 32 4.9 2
(GE452176) 294589744 Nasonia vitripennis Adult Female Nasoni... 36 4.9 2
(EH772005) CNSM4566.b1_L14.ab1 CNS(LMS) yellow starthistle C... 38 4.9 2
(BG184117) RST3036 Athersys RAGE Library Homo sapiens cDNA, ... 32 4.9 2
(FE238335) CAPG4805.rev CAPG Naegleria gruberi amoeba stage ... 38 4.9 2
(BG212017) RST31728 Athersys RAGE Library Homo sapiens cDNA,... 32 5.0 2
(FL969799) CCHY9342.b1 CCHY Panicum virgatum callus (N) Pani... 38 5.0 2
(BG216986) RST36687 Athersys RAGE Library Homo sapiens cDNA,... 32 5.0 2
(GO039340) LJNAN41TO JCVI-LJ3 Lotus japonicus cDNA 3', mRNA ... 38 5.0 2
(GE454454) 294592790 Nasonia vitripennis Adult Female Nasoni... 36 5.0 2
(DC218823) Plasmodium berghei strain ANKA cDNA clone:MZ00009... 34 5.0 3
(GE407889) 293799049 Nasonia vitripennis Female Pupae Nasoni... 36 5.0 2
(EL342458) CCEL10065.b1_A21.ab1 CCE(LMS) endive Cichorium en... 36 5.1 2
(FH636170) CHO_OF4564xd08f1.ab1 CHO_OF4 Nicotiana tabacum ge... 36 5.1 2
(EK070203) 1092960185079 Global-Ocean-Sampling_GS-31-01-01-1... 36 5.1 2
(CR293472) Oryza sativa cDNA clone:y838d11p3. 32 5.1 2
(EH789770) CNSS29813.b1_I14.ab1 CNS(LMS) yellow starthistle ... 38 5.1 2
(FC211427) CAGF12770.fwd CAGF Nematostella vectensis Nemve E... 32 5.1 2
(DY889314) CeleSEQ10789 Cunninghamella elegans pBluescript (... 34 5.1 2
(FH148450) CHO_OF3706xm13r1.ab1 CHO_OF3 Nicotiana tabacum ge... 38 5.1 2
(FG083612) UI-FF-IH0-abe-b-12-0-UI.r1 Ceratitis capitata adu... 38 5.1 2
(DY891610) CeleSEQ10345 Cunninghamella elegans pBluescript (... 34 5.1 2
(DY892791) CeleSEQ11800 Cunninghamella elegans pBluescript (... 34 5.1 2
(DW115819) CLRY3953.b2_B05.ab1 CLR(XYZ) lettuce serriola Lac... 36 5.2 2
(FG365964) CBHF3660.fwd CBHF Trichoderma virens strain Gv29-... 32 5.2 2
(DY830221) CTOY5814.b1_K13.ab1 CTO(XYZ) dandelion Taraxacum ... 38 5.2 2
(FG371056) CBHF6219.fwd CBHF Trichoderma virens strain Gv29-... 32 5.2 2
(DY962794) CLSM13070.b1_K03.ab1 CLS(LMS) lettuce sativa Lact... 36 5.2 2
(EB254524) CNSN01-C-006746-501 Normalized CNS library (juven... 30 5.2 2
(EL374232) CFFM11472.b1_P12.ab1 CFF(LMS) safflower Carthamus... 30 5.2 2
(GE595786) CCPW4443.b1_E08.ab1 CCP(UWX) Globe Artichoke Cyna... 32 5.2 2
(GE589544) CCPW13630.b1_L23.ab1 CCP(UWX) Globe Artichoke Cyn... 32 5.2 2
(DX762182) 2560937 VV07 Ustilago maydis genomic clone 110732... 34 5.2 2
(AM479121) Vitis vinifera contig VV78X177274.12, whole genom... 32 5.2 4
(EB950108) 13638424 ZF34XL Danio rerio cDNA clone 3854966, m... 34 5.2 2
(DX753927) 2210381 VV03 Ustilago maydis genomic clone 908004... 34 5.2 2
(EB938848) 9531725 ZF34 Danio rerio cDNA clone 3407521, mRNA... 34 5.2 2
(DX686729) 2189270 VV03 Ustilago maydis genomic clone 892390... 34 5.2 2
(EB951560) 13679634 ZF34XL Danio rerio cDNA clone 3856584, m... 34 5.2 2
(CN191792) UCRCS06_0005N12_r Washington Navel Orange Stored ... 32 5.2 3
(EB387265) nbj27f09.y1 Human optic nerve. Unnormalized (nbj)... 32 5.2 2
(EH027852) MMN_36_A11 Haploid cells grown in Minimal Media m... 34 5.2 2
(BJ391322) Dictyostelium discoideum cDNA clone:dds13p01, 5' ... 34 5.2 2
(FF570959) TTEBB93THC Tetrahymena thermophila conjugation cD... 34 5.2 2
(EH011208) USDA-FP_184230 Lysiphlebus testaceipes adult whol... 32 5.2 2

>(AU061837) Dictyostelium discoideum slug cDNA, clone SLG280.
Length = 215

Score = 371 bits (187), Expect = 7e-99
Identities = 187/187 (100%)
Strand = Plus / Plus


Query: 1 caattaatggtggaattcactcttcatcttcatcttcaactattattcaatcaactaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caattaatggtggaattcactcttcatcttcatcttcaactattattcaatcaactaata 60


Query: 61 atagtatttcttcaaataacaacacattagcatcagtattatccaattcaaattctaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atagtatttcttcaaataacaacacattagcatcagtattatccaattcaaattctaacc 120


Query: 121 cactaccatcatcttcttcacaagcatcttcatcatcaacacctttaacaatacaatcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cactaccatcatcttcttcacaagcatcttcatcatcaacacctttaacaatacaatcct 180


Query: 181 caacttc 187
|||||||
Sbjct: 181 caacttc 187

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 255,867,156
Number of extensions: 17754502
Number of successful extensions: 5387189
Number of sequences better than 10.0: 750
Length of query: 214
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 191
Effective length of database: 99,442,330,388
Effective search space: 18993485104108
Effective search space used: 18993485104108
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.14
Homology vs Protein
Query= Contig-U01335-1 (Contig-U01335-1Q) /CSM_Contig/Contig-U01335-1Q.Seq.d
(214 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 132,552,277
Number of extensions: 1149824
Number of successful extensions: 4079
Number of sequences better than 10.0: 0
Number of HSP's gapped: 4077
Number of HSP's successfully gapped: 0
Length of query: 71
Length of database: 1,051,180,864
Length adjustment: 42
Effective length of query: 29
Effective length of database: 915,245,386
Effective search space: 26542116194
Effective search space used: 26542116194
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)

PSORT

psg: 0.75 gvh: 0.48 alm: 0.60 top: 0.53 tms: 0.00 mit: 0.71 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: mitochondrial
16.0 %: nuclear
12.0 %: cytoplasmic

>> prediction for Contig-U01335-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0