NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U06984-1
Contig ID Contig-U06984-1
Contig update 2001. 8.30
Contig sequence 
>Contig-U06984-1 (Contig-U06984-1Q) /CSM_Contig/Contig-U06984-1Q.Seq.d
CAATACCAGACCACAATAATAATAATAATAATAATAATAAAAACAATAAT
GAAATTTTAAATTTTAAACAATTATTTAAAAAAATTGAAGAATTTAAACA
ATTAGGAAATCAAGAATTTTCAAAATATGATAAAACCAATGATAATTTAA
ATAAAAGAGCAGTTACATATTATTCATTAGGAATTGAATGTTTTAATGAT
AATTTTGAAAAATTAAAAAATAATAATAATAATAATAAAGATGATGAAAT
AGAATTAAAAAAATTAGTATCAATAATTTATTCAAATTTATCATTATGTT
TTATAAATGGTTATGAAATTGATAAAGCGTTAGAATTTGCAAATAAAGGT
ACTGAAATTGATAAAGATAATTCAAAATGTCATTATAGGAAATCATTATG
TTATCAATATATGTGTAATTTTAAAGAATCATTTAAATCAATTAATGATG
CATTAAATTCAATTAATAATAATAATAATAATGGGTAAAGTTATAATTGA
TAAATCTTTAAAACAAATAATTGAAAATGAAAGAAAAAAAAA
Gap no gap
Contig length 542
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3359090
End point 3358548
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 2
Link to clone list U06984
List of clone(s) 

est1=VSJ187F,1,543
est2=VSJ187Z,1,520
Translated Amino Acid sequence 
IPDHNNNNNNNNKNNNEILNFKQLFKKIEEFKQLGNQEFSKYDKTNDNLNKRAVTYYSLG
IECFNDNFEKLKNNNNNNKDDEIELKKLVSIIYSNLSLCFINGYEIDKALEFANKGTEID
KDNSKCHYRKSLCYQYMCNFKESFKSINDALNSINNNNNNG*syn**ifktnn*k*kkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
qyqttiiiiiiiiktimkf*ilnnylkklknlnn*eiknfqnmikpmii*ikeqlhiih*
elnvlmiilkn*kiiiiiikmmk*n*kn*yq*fiqiyhyvl*mvmklikr*nlqikvlkl
ikiiqnviignhyvinicvilknhlnqlmmh*iqliiiiimgkviidkslkqiienerkk


Frame B:
ntrpq********kq**nfkf*tii*kn*ri*tirksrifki**nq**fk*kssyilfir
n*mf***f*kikk******r**nrikkisinnlfkfiimfykwl*n**svrick*ry*n*
*r*fkmsl*eiimlsiyv*f*rii*in**cikfn******wvkl*linl*nk*lkmkekk


Frame C:
IPDHNNNNNNNNKNNNEILNFKQLFKKIEEFKQLGNQEFSKYDKTNDNLNKRAVTYYSLG
IECFNDNFEKLKNNNNNNKDDEIELKKLVSIIYSNLSLCFINGYEIDKALEFANKGTEID
KDNSKCHYRKSLCYQYMCNFKESFKSINDALNSINNNNNNG*syn**ifktnn*k*kkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U06984-1 (Contig-U06984-1Q)
/CSM_Contig/Contig-U06984-1Q.Seq.d
         (542 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U06984-1 (Contig-U06984-1Q) /CSM_Contig/Conti...   321  4e-88
Contig-U12167-1 (Contig-U12167-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U09180-1 (Contig-U09180-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U05005-1 (Contig-U05005-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U13903-1 (Contig-U13903-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U12657-1 (Contig-U12657-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U12257-1 (Contig-U12257-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U10146-1 (Contig-U10146-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U09602-1 (Contig-U09602-1Q) /CSM_Contig/Conti...    32  0.59
Contig-U03748-1 (Contig-U03748-1Q) /CSM_Contig/Conti...    32  0.59

>Contig-U06984-1 (Contig-U06984-1Q) /CSM_Contig/Contig-U06984-1Q.Seq.d
          Length = 542

 Score =  321 bits (162), Expect = 4e-88
 Identities = 162/162 (100%)
 Strand = Plus / Plus

                                                                       
Query: 264 ttagtatcaataatttattcaaatttatcattatgttttataaatggttatgaaattgat 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttagtatcaataatttattcaaatttatcattatgttttataaatggttatgaaattgat 323

                                                                       
Query: 324 aaagcgttagaatttgcaaataaaggtactgaaattgataaagataattcaaaatgtcat 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaagcgttagaatttgcaaataaaggtactgaaattgataaagataattcaaaatgtcat 383

                                                     
Query: 384 tataggaaatcattatgttatcaatatatgtgtaattttaaa 425
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tataggaaatcattatgttatcaatatatgtgtaattttaaa 425


 Score =  244 bits (123), Expect = 8e-65
 Identities = 123/123 (100%)
 Strand = Plus / Plus

                                                                       
Query: 85  ttgaagaatttaaacaattaggaaatcaagaattttcaaaatatgataaaaccaatgata 144
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  ttgaagaatttaaacaattaggaaatcaagaattttcaaaatatgataaaaccaatgata 144

                                                                       
Query: 145 atttaaataaaagagcagttacatattattcattaggaattgaatgttttaatgataatt 204
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 atttaaataaaagagcagttacatattattcattaggaattgaatgttttaatgataatt 204

              
Query: 205 ttg 207
           |||
Sbjct: 205 ttg 207


 Score =  101 bits (51), Expect = 8e-22
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                              
Query: 483 gggtaaagttataattgataaatctttaaaacaaataattgaaaatgaaag 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gggtaaagttataattgataaatctttaaaacaaataattgaaaatgaaag 533


 Score = 28.2 bits (14), Expect = 9.2
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                        
Query: 1  caataccagaccac 14
          ||||||||||||||
Sbjct: 1  caataccagaccac 14


>Contig-U12167-1 (Contig-U12167-1Q) /CSM_Contig/Contig-U12167-1Q.Seq.d
          Length = 1271

 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 265  tagtatcaataatttattcaaa 286
            ||||||||||||||||||||||
Sbjct: 1152 tagtatcaataatttattcaaa 1173


>Contig-U09180-1 (Contig-U09180-1Q) /CSM_Contig/Contig-U09180-1Q.Seq.d
          Length = 598

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 188 atgttttaatgataatttt 206
           |||||||||||||||||||
Sbjct: 213 atgttttaatgataatttt 195


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,145
Number of Sequences: 6905
Number of extensions: 10145
Number of successful extensions: 1286
Number of sequences better than 10.0: 414
length of query: 542
length of database: 5,674,871
effective HSP length: 16
effective length of query: 526
effective length of database: 5,564,391
effective search space: 2926869666
effective search space used: 2926869666
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.11
Homology vs DNA 
Query= Contig-U06984-1 (Contig-U06984-1Q) /CSM_Contig/Contig-U06984-1Q.Seq.d
         (542 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269543) Dictyostelium discoideum vegetative cDNA clone:VS...   274   e-110  3
(AU269542) Dictyostelium discoideum vegetative cDNA clone:VS...   274   e-110  3
(AC181855) Strongylocentrotus purpuratus clone R3-1021A14, W...    38   1.0    5
(ER859647) POTKS49TR Solanum tuberosum RHPOTKEY BAC ends Sol...    46   1.3    1
(BQ835003) Po_ad_06A10_TEXF1 Psoroptes ovis mixed Psoroptes ...    46   1.3    1
(BE029840) kp35f01.y1 TBN95TM-SSFH Strongyloides stercoralis...    46   1.3    1
(CP000936) Streptococcus pneumoniae Hungary19A-6, complete g...    46   1.3    1
(AC155121) Bos taurus clone CH240-44H21, WORKING DRAFT SEQUE...    40   1.9    2
(BI209677) EST527717 cTOS Solanum lycopersicum cDNA clone cT...    34   4.7    3
(Z67883) Caenorhabditis elegans Cosmid K02A4.                      44   5.1    1
(AC148254) Otolemur garnettii clone CH256-43A17, WORKING DRA...    44   5.1    1
(BH146793) ENTQD44TR Entamoeba histolytica Sheared DNA Entam...    44   5.1    1
(EK423693) 1095515647805 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.1    1
(ED946259) OA_CBa0127O09.r OA_CBa Oryza australiensis genomi...    44   5.1    1
(ED938023) OA_CBa0143H18.r OA_CBa Oryza australiensis genomi...    44   5.1    1
(CW557983) OA_ABa0079B24.f OA_ABa Oryza australiensis genomi...    44   5.1    1
(BJ128668) Caenorhabditis elegans cDNA clone:yk1021e04 : 3' ...    44   5.1    1
(BJ101038) Caenorhabditis elegans cDNA clone:yk1021e04 : 5' ...    44   5.1    1
(CP000814) Campylobacter jejuni subsp. jejuni 81116, complet...    44   5.1    1
(CP000768) Campylobacter jejuni subsp. doylei 269.97, comple...    44   5.1    1
(CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple...    44   5.1    1
(BX545860) Campylobacter jejuni.                                   44   5.1    1
(BX545859) Campylobacter jejuni.                                   44   5.1    1
(BX545858) Campylobacter jejuni.                                   44   5.1    1
(AY332625) Campylobacter jejuni serotype HS:23 possible poly...    44   5.1    1
(AY332624) Campylobacter jejuni serotype HS:36 possible poly...    44   5.1    1
(AL111168) Campylobacter jejuni subsp. jejuni NCTC 11168 com...    44   5.1    1
(BI205964) EST524004 cTOS Solanum lycopersicum cDNA clone cT...    34   5.3    3
(EF067921) Thalassiosira pseudonana chloroplast, complete ge...    42   7.6    3
(AY266451) Plasmodium falciparum isolate 3D7 COPI protein (S...    42   7.7    2
(EK097473) 1092962047198 Global-Ocean-Sampling_GS-31-01-01-1...    34   8.3    2
(AC117108) Rattus norvegicus clone CH230-240I5, *** SEQUENCI...    30   8.6    2
(AC117022) Rattus norvegicus clone CH230-239E11, *** SEQUENC...    30   8.6    2
(EK533234) 1095516016996 Global-Ocean-Sampling_GS-32-01-01-1...    40   8.9    2
(AC106212) Rattus norvegicus clone CH230-42I19, *** SEQUENCI...    30   9.0    2
(ER390099) 1094428835918 Global-Ocean-Sampling_GS-34-01-01-1...    40   9.1    2
(AC134491) Rattus norvegicus clone CH230-310I17, *** SEQUENC...    30   9.1    2
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105...    30   9.9    2

>(AU269543) Dictyostelium discoideum vegetative cDNA clone:VSJ187,
           3' end single read.
          Length = 518

 Score =  274 bits (138), Expect(3) = e-110
 Identities = 138/138 (100%)
 Strand = Plus / Plus


Query: 278 ttattcaaatttatcattatgttttataaatggttatgaaattgataaagcgttagaatt 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttattcaaatttatcattatgttttataaatggttatgaaattgataaagcgttagaatt 337


Query: 338 tgcaaataaaggtactgaaattgataaagataattcaaaatgtcattataggaaatcatt 397
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgcaaataaaggtactgaaattgataaagataattcaaaatgtcattataggaaatcatt 397


Query: 398 atgttatcaatatatgtg 415
           ||||||||||||||||||
Sbjct: 398 atgttatcaatatatgtg 415

 Score =  157 bits (79), Expect(3) = e-110
 Identities = 79/79 (100%)
 Strand = Plus / Plus


Query: 103 taggaaatcaagaattttcaaaatatgataaaaccaatgataatttaaataaaagagcag 162
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 taggaaatcaagaattttcaaaatatgataaaaccaatgataatttaaataaaagagcag 162


Query: 163 ttacatattattcattagg 181
           |||||||||||||||||||
Sbjct: 163 ttacatattattcattagg 181

 Score = 28.2 bits (14), Expect(3) = e-110
 Identities = 14/14 (100%)
 Strand = Plus / Plus


Query: 1  caataccagaccac 14
          ||||||||||||||
Sbjct: 1  caataccagaccac 14

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 326,355,344
Number of extensions: 21914124
Number of successful extensions: 1987593
Number of sequences better than 10.0: 39
Length of query: 542
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 519
Effective length of database: 93,106,754,628
Effective search space: 48322405651932
Effective search space used: 48322405651932
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U06984-1 (Contig-U06984-1Q) /CSM_Contig/Contig-U06984-1Q.Seq.d
         (542 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014188_398(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    44   0.003
CP000743_758(CP000743|pid:none) Methanococcus aeolicus Nankai-3,...    41   0.023
AY144974_1(AY144974|pid:none) Saccharomyces castellii clone Cont...    41   0.023
CP000932_410(CP000932|pid:none) Campylobacter lari RM2100, compl...    40   0.030
CP000102_1280(CP000102|pid:none) Methanosphaera stadtmanae DSM 3...    40   0.030
BC108631_1(BC108631|pid:none) Xenopus laevis hypothetical protei...    40   0.039
CP001357_2478(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    40   0.039
CP001357_1583(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    39   0.066
BC121437_1(BC121437|pid:none) Xenopus tropicalis STIP1 homology ...    39   0.066
AM920436_1277(AM920436|pid:none) Penicillium chrysogenum Wiscons...    39   0.086
AY223080_1(AY223080|pid:none) Schistosoma japonicum SJCHGC01343 ...    39   0.086
BC064232_1(BC064232|pid:none) Xenopus tropicalis stress-induced-...    39   0.086
AK302128_1(AK302128|pid:none) Homo sapiens cDNA FLJ54989 complet...    38   0.15
BC046709_1(BC046709|pid:none) Xenopus laevis stress-induced-phos...    38   0.15
AK222952_1(AK222952|pid:none) Homo sapiens mRNA for translocase ...    38   0.15
U58970_1(U58970|pid:none) Human putative outer mitochondrial mem...    38   0.15
(Q15785) RecName: Full=Mitochondrial import receptor subunit TOM...    38   0.15
EU686625_13(EU686625|pid:none) Uncultured marine crenarchaeote K...    38   0.19
EU016614_2(EU016614|pid:none) Uncultured Group I marine crenarch...    38   0.19
CP001357_950(CP001357|pid:none) Brachyspira hyodysenteriae WA1, ...    37   0.25
CP000568_3003(CP000568|pid:none) Clostridium thermocellum ATCC 2...    37   0.25
EU686642_26(EU686642|pid:none) Uncultured marine crenarchaeote S...    37   0.25
EU686623_14(EU686623|pid:none) Uncultured marine crenarchaeote A...    37   0.25
AP008971_861(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,...    37   0.25
AM910986_68(AM910986|pid:none) Plasmodium knowlesi strain H chro...    37   0.33
CP001056_1798(CP001056|pid:none) Clostridium botulinum B str. Ek...    37   0.33
AF311312_1(AF311312|pid:none) Homo sapiens infertility-related s...    37   0.43
CP000300_425(CP000300|pid:none) Methanococcoides burtonii DSM 62...    37   0.43
AI1241(AI1241) B. subtilis yqgP homolog lmo1337 [imported] - Lis...    36   0.56
AB087254_1(AB087254|pid:none) Mus musculus Tomm34a, Tomm34b gene...    36   0.56
(Q9WUD1) RecName: Full=STIP1 homology and U box-containing prote...    36   0.56
BC099240_1(BC099240|pid:none) Rattus norvegicus STIP1 homology a...    36   0.56
AK011786_1(AK011786|pid:none) Mus musculus 10 days embryo whole ...    36   0.56
EU005652_1(EU005652|pid:none) Bos taurus STIP1 homology and U-bo...    36   0.56
AK158595_1(AK158595|pid:none) Mus musculus visual cortex cDNA, R...    36   0.56
AY144973_1(AY144973|pid:none) Saccharomyces castellii clone Cont...    36   0.56
AE015927_1633(AE015927|pid:none) Clostridium tetani E88, complet...    36   0.56
FM242711_1320(FM242711|pid:none) Listeria monocytogenes Clip8145...    36   0.56
AF039689_1(AF039689|pid:none) Homo sapiens antigen NY-CO-7 (NY-C...    36   0.56
AF129085_1(AF129085|pid:none) Homo sapiens carboxy terminus of H...    36   0.56
AY714817_27(AY714817|pid:none) Uncultured archaeon GZfos12E1 clo...    36   0.73
CP001357_1973(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    36   0.73
AC135564_17(AC135564|pid:none) Oryza sativa chromosome 3 BAC OSJ...    35   1.2
AC137921_30(AC137921|pid:none) Oryza sativa chromosome 3 BAC OSJ...    35   1.2
EF125228_4(EF125228|pid:none) Saccharomyces cerevisiae clone YJM...    35   1.2
EF125219_4(EF125219|pid:none) Saccharomyces cerevisiae clone YJM...    35   1.2
EF125226_4(EF125226|pid:none) Saccharomyces cerevisiae clone YJM...    35   1.2
AC084406_4(AC084406|pid:none) Oryza sativa chromosome 3 BAC OSJN...    35   1.2
AC079736_12(AC079736|pid:none) Oryza sativa (japonica cultivar-g...    35   1.2
AY924687_1(AY924687|pid:none) Arabidopsis thaliana hypothetical ...    35   1.6
AE001437_181(AE001437|pid:none) Clostridium acetobutylicum ATCC ...    35   1.6
AC084406_5(AC084406|pid:none) Oryza sativa chromosome 3 BAC OSJN...    35   1.6
AC000348_17(AC000348|pid:none) Genomic sequence for Arabidopsis ...    35   1.6
CP000859_275(CP000859|pid:none) Desulfococcus oleovorans Hxd3, c...    34   2.1
EU686633_7(EU686633|pid:none) Uncultured marine crenarchaeote AD...    34   2.1
CP000081_397(CP000081|pid:none) Leishmania major chromosome 35, ...    34   2.1
AM910995_290(AM910995|pid:none) Plasmodium knowlesi strain H chr...    34   2.1
(Q3KRD5) RecName: Full=Mitochondrial import receptor subunit TOM...    34   2.1
AC084406_2(AC084406|pid:none) Oryza sativa chromosome 3 BAC OSJN...    34   2.1
BC093166_1(BC093166|pid:none) Danio rerio unc-45 homolog A (C. e...    34   2.8
CP000867_209(CP000867|pid:none) Methanococcus maripaludis C6, co...    34   2.8
AE001437_1032(AE001437|pid:none) Clostridium acetobutylicum ATCC...    34   2.8
BC076400_1(BC076400|pid:none) Danio rerio unc-45 homolog B (C. e...    34   2.8
AY723747_1(AY723747|pid:none) Gallus gallus FK-506 binding prote...    34   2.8
AM494971_398(AM494971|pid:none) Leishmania braziliensis chromoso...    34   2.8
AF330001_1(AF330001|pid:none) Danio rerio UNC45-related protein ...    34   2.8
CP001348_1156(CP001348|pid:none) Clostridium cellulolyticum H10,...    34   2.8
BX950229_673(BX950229|pid:none) Methanococcus maripaludis strain...    34   2.8
(Q84XU2) RecName: Full=Serine/threonine protein phosphatase 5;  ...    33   3.6
CP000806_2618(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    33   3.6
CR382122_444(CR382122|pid:none) Kluyveromyces lactis strain NRRL...    33   3.6
CR954215_195(CR954215|pid:none) Ostreococcus tauri strain OTTH05...    33   3.6
(Q84K11) RecName: Full=Serine/threonine protein phosphatase 5;  ...    33   4.7
BC077837_1(BC077837|pid:none) Xenopus laevis MGC80522 protein, m...    33   4.7
CU928170_603(CU928170|pid:none) Kluyveromyces thermotolerans str...    33   4.7
AE016815_343(AE016815|pid:none) Ashbya gossypii (= Eremothecium ...    33   4.7
AC084406_10(AC084406|pid:none) Oryza sativa chromosome 3 BAC OSJ...    33   6.2
BC048884_1(BC048884|pid:none) Danio rerio zinc finger CCCH-type ...    33   6.2
CU928166_209(CU928166|pid:none) Kluyveromyces thermotolerans str...    33   6.2
AK073324_1(AK073324|pid:none) Oryza sativa Japonica Group cDNA c...    33   6.2
BC153490_1(BC153490|pid:none) Danio rerio zinc finger CCCH-type ...    33   6.2
CP000097_120(CP000097|pid:none) Synechococcus sp. CC9902, comple...    32   8.0
AF056198_1(AF056198|pid:none) Drosophila melanogaster Hsp70/Hsp9...    32   8.0
CP000108_298(CP000108|pid:none) Chlorobium chlorochromatii CaD3,...    32   8.0
EU686624_26(EU686624|pid:none) Uncultured marine crenarchaeote A...    32   8.0
CP000721_2618(CP000721|pid:none) Clostridium beijerinckii NCIMB ...    32   8.0
CP000745_1682(CP000745|pid:none) Methanococcus maripaludis C7, c...    32   8.0
AK159389_1(AK159389|pid:none) Mus musculus osteoclast-like cell ...    32   8.0
(Q64378) RecName: Full=FK506-binding protein 5;          EC=5.2....    32   8.0
CT005272_8(CT005272|pid:none) Leishmania major strain Friedlin, ...    32   8.0
C48583(C48583) stress-inducible protein STI1 homolog - Leishmani...    32   8.0

>AE014188_398(AE014188|pid:none) Plasmodium falciparum 3D7
           chromosome 12, complete sequence.
           &AE014851_6(AE014851|pid:none)
          Length = 676

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 33/128 (25%), Positives = 57/128 (44%)
 Frame = +3

Query: 72  LFKKIEEFKQLGNQEFSKYDKTNDNLNKRAVTYYSLGIECXXXXXXXXXXXXXXXXXXXX 251
           L K +EE K +GN     Y K ND LN  A+ YY+  ++
Sbjct: 500 LNKSVEEIKDIGN----NYFKNNDYLN--AIYYYNKALK-------------------KC 534

Query: 252 XXXXLVSIIYSNLSLCFINGYEIDKALEFANKGTEIDKDNSKCHYRKSLCYQYMCNFKES 431
               + SI+YSN + C I   + +  +E  NK   ++ + +K + R+S  Y+ +  + ++
Sbjct: 535 KDKNIKSILYSNRAACNIFLKKWNTVIEDCNKSIHLNDNFAKSYIRRSNAYEQLQKYNDA 594

Query: 432 FKSINDAL 455
              +N AL
Sbjct: 595 SNDLNKAL 602

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 381,898,555
Number of extensions: 4561869
Number of successful extensions: 12827
Number of sequences better than 10.0: 91
Number of HSP's gapped: 12816
Number of HSP's successfully gapped: 96
Length of query: 180
Length of database: 1,040,966,779
Length adjustment: 120
Effective length of query: 60
Effective length of database: 656,452,579
Effective search space: 39387154740
Effective search space used: 39387154740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.75  gvh: 0.20  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U06984-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0