NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U07450-1
Contig ID Contig-U07450-1
Contig update 2002. 5. 9
Contig sequence 
>Contig-U07450-1 (Contig-U07450-1Q) /CSM_Contig/Contig-U07450-1Q.Seq.d
ATGAGTTTAAGGGATATGTCTTNAAGATTATGGGAGGATGCGATAAGCAG
GGTTTTCCCATGAAGCAGGGTGTGTTGACTCAAGGACGCGTACAGCTCCT
AATGCACCGAGGTGTCTCTTGCTTCCGAGGATACGGGAGGCGCAACGGNG
AGCGTAGGCGAAAGTCCGTTAGAGGGTGCATTGTGAGTCCCGACCTCTCA
GTGCTGAACCTNGTTATTGTCAAGCAAGGTGATAATGACCTTNCTGGGCT
TACCGACATTGAGAAGCCA
Gap no gap
Contig length 269
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 2
Number of EST 1
Link to clone list U07450
List of clone(s) 

est1=FC-IC0395F,1,270
Translated Amino Acid sequence 
EFKGYVXKIMGGCDKQGFPMKQGVLTQGRVQLLMHRGVSCFRGYGRRNGERRRKSVRGCI
VSPDLSVLNLVIVKQGDNDLXGLTDIEKP
Translated Amino Acid sequence (All Frames) 
Frame A:
mslrdmsxrlwedaisrvfp*srvc*lkdayss*ctevslasedtggatxsvgesplega
l*vptsqc*txllsskvimtxlglptlrs


Frame B:
*v*giclxdygrmr*agfsheagcvdsrtrtapnaprclllprireaqrxa*akvr*rvh
cesrplsaepxycqar***pxwayrh*ea


Frame C:
EFKGYVXKIMGGCDKQGFPMKQGVLTQGRVQLLMHRGVSCFRGYGRRNGERRRKSVRGCI
VSPDLSVLNLVIVKQGDNDLXGLTDIEKP
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U07450-1 (Contig-U07450-1Q)
/CSM_Contig/Contig-U07450-1Q.Seq.d
         (269 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U07450-1 (Contig-U07450-1Q) /CSM_Contig/Conti...   509  e-145
Contig-U13532-1 (Contig-U13532-1Q) /CSM_Contig/Conti...    28  4.4
Contig-U10140-1 (Contig-U10140-1Q) /CSM_Contig/Conti...    28  4.4

>Contig-U07450-1 (Contig-U07450-1Q) /CSM_Contig/Contig-U07450-1Q.Seq.d
          Length = 269

 Score =  509 bits (257), Expect = e-145
 Identities = 269/269 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgagtttaagggatatgtcttnaagattatgggaggatgcgataagcagggttttccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgagtttaagggatatgtcttnaagattatgggaggatgcgataagcagggttttccca 60

                                                                       
Query: 61  tgaagcagggtgtgttgactcaaggacgcgtacagctcctaatgcaccgaggtgtctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgaagcagggtgtgttgactcaaggacgcgtacagctcctaatgcaccgaggtgtctctt 120

                                                                       
Query: 121 gcttccgaggatacgggaggcgcaacggngagcgtaggcgaaagtccgttagagggtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcttccgaggatacgggaggcgcaacggngagcgtaggcgaaagtccgttagagggtgca 180

                                                                       
Query: 181 ttgtgagtcccgacctctcagtgctgaacctngttattgtcaagcaaggtgataatgacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgtgagtcccgacctctcagtgctgaacctngttattgtcaagcaaggtgataatgacc 240

                                        
Query: 241 ttnctgggcttaccgacattgagaagcca 269
           |||||||||||||||||||||||||||||
Sbjct: 241 ttnctgggcttaccgacattgagaagcca 269


>Contig-U13532-1 (Contig-U13532-1Q) /CSM_Contig/Contig-U13532-1Q.Seq.d
          Length = 617

 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 225 caaggtgataatga 238
           ||||||||||||||
Sbjct: 426 caaggtgataatga 439


>Contig-U10140-1 (Contig-U10140-1Q) /CSM_Contig/Contig-U10140-1Q.Seq.d
          Length = 1218

 Score = 28.2 bits (14), Expect = 4.4
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                         
Query: 224 gcaaggtgataatg 237
           ||||||||||||||
Sbjct: 251 gcaaggtgataatg 264


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 225
Number of Sequences: 6905
Number of extensions: 225
Number of successful extensions: 50
Number of sequences better than 10.0: 3
length of query: 269
length of database: 5,674,871
effective HSP length: 15
effective length of query: 254
effective length of database: 5,571,296
effective search space: 1415109184
effective search space used: 1415109184
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.11.11
Homology vs DNA 
Query= Contig-U07450-1 (Contig-U07450-1Q) /CSM_Contig/Contig-U07450-1Q.Seq.d
         (269 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU271571) Dictyostelium discoideum gamete cDNA clone:FC-IC0...   509   e-140  1
(BU051629) gd60g11.y1 Moss EST library PPAS Physcomitrella p...   509   e-140  1
(BJ970113) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ954616) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ950821) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ610961) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ610251) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ608925) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ588257) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ584990) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ204768) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ204325) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ194355) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ191610) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ186889) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ182329) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ161236) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ158975) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(BJ157048) Physcomitrella patens subsp. patens cDNA clone:pp...   509   e-140  1
(FC455512) CBAX9404.fwd CBAX Physcomitrella patens subsp. pa...   509   e-140  1
(FC455511) CBAX9404.rev CBAX Physcomitrella patens subsp. pa...   509   e-140  1
(FC452183) CBAX7098.fwd CBAX Physcomitrella patens subsp. pa...   509   e-140  1
(FC451276) CBAX6613.fwd CBAX Physcomitrella patens subsp. pa...   509   e-140  1
(FC451275) CBAX6613.rev CBAX Physcomitrella patens subsp. pa...   509   e-140  1
(FC445373) CBAX3447.fwd CBAX Physcomitrella patens subsp. pa...   509   e-140  1
(FC445372) CBAX3447.rev CBAX Physcomitrella patens subsp. pa...   509   e-140  1
(FC445214) CBAX3357.fwd CBAX Physcomitrella patens subsp. pa...   509   e-140  1
(FC445213) CBAX3357.rev CBAX Physcomitrella patens subsp. pa...   509   e-140  1
(FC438962) CBAX12642.fwd CBAX Physcomitrella patens subsp. p...   509   e-140  1
(FC438961) CBAX12642.rev CBAX Physcomitrella patens subsp. p...   509   e-140  1
(FC428513) CAYZ8881.fwd CAYZ Physcomitrella patens subsp. pa...   509   e-140  1
(FC428512) CAYZ8881.rev CAYZ Physcomitrella patens subsp. pa...   509   e-140  1
(FC423414) CAYZ6196.fwd CAYZ Physcomitrella patens subsp. pa...   509   e-140  1
(FC423413) CAYZ6196.rev CAYZ Physcomitrella patens subsp. pa...   509   e-140  1
(FC413009) CAYZ32289.fwd CAYZ Physcomitrella patens subsp. p...   509   e-140  1
(FC407929) CAYZ2944.fwd CAYZ Physcomitrella patens subsp. pa...   509   e-140  1
(FC405147) CAYZ26860.fwd CAYZ Physcomitrella patens subsp. p...   509   e-140  1
(FC405146) CAYZ26860.rev CAYZ Physcomitrella patens subsp. p...   509   e-140  1
(FC397454) CAYZ22127.fwd CAYZ Physcomitrella patens subsp. p...   509   e-140  1
(FC396149) CAYZ21073.fwd CAYZ Physcomitrella patens subsp. p...   509   e-140  1
(FC396148) CAYZ21073.rev CAYZ Physcomitrella patens subsp. p...   509   e-140  1
(FC377523) CAYZ11230.fwd CAYZ Physcomitrella patens subsp. p...   509   e-140  1
(FC377522) CAYZ11230.rev CAYZ Physcomitrella patens subsp. p...   509   e-140  1
(BJ182959) Physcomitrella patens subsp. patens cDNA clone:pp...   505   e-139  1
(FC452182) CBAX7098.rev CBAX Physcomitrella patens subsp. pa...   504   e-139  1
(BJ978254) Physcomitrella patens subsp. patens cDNA clone:pp...   502   e-138  1
(BJ969988) Physcomitrella patens subsp. patens cDNA clone:pp...   502   e-138  1
(BJ587904) Physcomitrella patens subsp. patens cDNA clone:pp...   502   e-138  1
(BJ182620) Physcomitrella patens subsp. patens cDNA clone:pp...   502   e-138  1
(FC407928) CAYZ2944.rev CAYZ Physcomitrella patens subsp. pa...   502   e-138  1
(BJ597599) Physcomitrella patens subsp. patens cDNA clone:pp...   470   e-135  2
(BJ201692) Physcomitrella patens subsp. patens cDNA clone:pp...   303   e-135  2
(BJ601695) Physcomitrella patens subsp. patens cDNA clone:pp...   305   e-133  2
(BJ978374) Physcomitrella patens subsp. patens cDNA clone:pp...   462   e-132  2
(BJ166961) Physcomitrella patens subsp. patens cDNA clone:pp...   472   e-129  1
(FC456387) CBAX9918.fwd CBAX Physcomitrella patens subsp. pa...   470   e-128  1
(FC397453) CAYZ22127.rev CAYZ Physcomitrella patens subsp. p...   444   e-121  1
(BJ943895) Physcomitrella patens subsp. patens cDNA clone:pp...   426   e-115  1
(BJ962957) Physcomitrella patens subsp. patens cDNA clone:pp...   418   e-113  1
(FC413008) CAYZ32289.rev CAYZ Physcomitrella patens subsp. p...   400   e-108  1
(BJ587264) Physcomitrella patens subsp. patens cDNA clone:pp...   353   2e-93  1
(BJ589452) Physcomitrella patens subsp. patens cDNA clone:pp...   287   1e-73  1
(BJ164678) Physcomitrella patens subsp. patens cDNA clone:pp...   268   9e-68  1
(BJ964071) Physcomitrella patens subsp. patens cDNA clone:pp...   250   2e-62  1
(BJ962939) Physcomitrella patens subsp. patens cDNA clone:pp...   246   3e-61  1
(BQ040399) gd15c07.y1 Moss EST library PPS Physcomitrella pa...   232   5e-57  1
(BJ958719) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ954901) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ947865) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ947778) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ602993) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ590469) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ205993) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ205142) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ204974) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ203531) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ200062) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ187572) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ184238) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ174139) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(BJ172144) Physcomitrella patens subsp. patens cDNA clone:pp...   232   5e-57  1
(FC455899) CBAX9627.fwd CBAX Physcomitrella patens subsp. pa...   232   5e-57  1
(FC455898) CBAX9627.rev CBAX Physcomitrella patens subsp. pa...   232   5e-57  1
(FC446098) CBAX3855.fwd CBAX Physcomitrella patens subsp. pa...   232   5e-57  1
(FC446097) CBAX3855.rev CBAX Physcomitrella patens subsp. pa...   232   5e-57  1
(FC417963) CAYZ36175.fwd CAYZ Physcomitrella patens subsp. p...   232   5e-57  1
(FC417962) CAYZ36175.rev CAYZ Physcomitrella patens subsp. p...   232   5e-57  1
(FC411201) CAYZ31223.fwd CAYZ Physcomitrella patens subsp. p...   232   5e-57  1
(FC411200) CAYZ31223.rev CAYZ Physcomitrella patens subsp. p...   232   5e-57  1
(FC382426) CAYZ13815.fwd CAYZ Physcomitrella patens subsp. p...   228   8e-56  1
(BJ602071) Physcomitrella patens subsp. patens cDNA clone:pp...   224   1e-54  1
(BJ579246) Physcomitrella patens subsp. patens cDNA clone:pp...   224   1e-54  1
(BJ958614) Physcomitrella patens subsp. patens cDNA clone:pp...   216   3e-52  1
(CN200625) Tor10291 Gametophyte rehydration Library Syntrich...   208   3e-52  2
(CN205665) Tor6072 Gametophyte rehydration Library Syntrichi...   208   3e-52  2
(CN202424) Tor2583 Gametophyte rehydration Library Syntrichi...   208   3e-52  2
(CN207120) Tor7541 Gametophyte rehydration Library Syntrichi...   208   3e-52  2
(BY981418) Physcomitrella patens subsp. patens cDNA clone: P...   214   1e-51  1
(BQ041959) gd08h04.y1 Moss EST library PPS Physcomitrella pa...   214   1e-51  1
(BQ039153) gd05f03.y1 Moss EST library PPS Physcomitrella pa...   214   1e-51  1

>(AU271571) Dictyostelium discoideum gamete cDNA clone:FC-IC0395, 5'
           end single read.
          Length = 270

 Score =  509 bits (257), Expect = e-140
 Identities = 269/269 (100%)
 Strand = Plus / Plus


Query: 1   atgagtttaagggatatgtcttnaagattatgggaggatgcgataagcagggttttccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgagtttaagggatatgtcttnaagattatgggaggatgcgataagcagggttttccca 60


Query: 61  tgaagcagggtgtgttgactcaaggacgcgtacagctcctaatgcaccgaggtgtctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgaagcagggtgtgttgactcaaggacgcgtacagctcctaatgcaccgaggtgtctctt 120


Query: 121 gcttccgaggatacgggaggcgcaacggngagcgtaggcgaaagtccgttagagggtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcttccgaggatacgggaggcgcaacggngagcgtaggcgaaagtccgttagagggtgca 180


Query: 181 ttgtgagtcccgacctctcagtgctgaacctngttattgtcaagcaaggtgataatgacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgtgagtcccgacctctcagtgctgaacctngttattgtcaagcaaggtgataatgacc 240


Query: 241 ttnctgggcttaccgacattgagaagcca 269
           |||||||||||||||||||||||||||||
Sbjct: 241 ttnctgggcttaccgacattgagaagcca 269

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 161,156,126
Number of extensions: 7566398
Number of successful extensions: 529726
Number of sequences better than 10.0: 15721
Length of query: 269
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 246
Effective length of database: 93,106,754,628
Effective search space: 22904261638488
Effective search space used: 22904261638488
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 6.23
Homology vs Protein 
Query= Contig-U07450-1 (Contig-U07450-1Q) /CSM_Contig/Contig-U07450-1Q.Seq.d
         (269 letters)

Database: nrp_A
           3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU284819_1(EU284819|pid:none) TSA: Elaeis guineensis EgEfMPOB000...   127   9e-29
(Q9M3V8) RecName: Full=40S ribosomal protein S6;  &AJ277533_1(AJ...   127   1e-28
BT070723_1(BT070723|pid:none) Picea sitchensis clone WS02747_A17...   125   3e-28
AC146855_29(AC146855|pid:none) Medicago truncatula clone mth2-16...   125   6e-28
BT051915_1(BT051915|pid:none) Medicago truncatula clone MTYF5_F6...   125   6e-28
DQ191669_1(DQ191669|pid:none) Solanum tuberosum ribosomal protei...   123   2e-27
EF495213_1(EF495213|pid:none) Glycine max ribosomal protein S6 g...   123   2e-27
S26078(S26078;S25550)ribosomal protein S6, cytosolic - common to...   123   2e-27
(O48549) RecName: Full=40S ribosomal protein S6-1;  &AL031004_11...   123   2e-27
EU959862_1(EU959862|pid:none) Zea mays clone 220170 40S ribosoma...   122   4e-27
EU959790_1(EU959790|pid:none) Zea mays clone 220042 40S ribosoma...   122   4e-27
EF144774_1(EF144774|pid:none) Populus trichocarpa clone WS01118_...   122   4e-27
AK069465_1(AK069465|pid:none) Oryza sativa Japonica Group cDNA c...   122   5e-27
Y14052_1(Y14052|pid:none) Arabidopsis thaliana mRNA for ribosoma...   122   5e-27
EF144993_1(EF144993|pid:none) Populus trichocarpa clone WS0111_G...   120   1e-26
AF034217_1(AF034217|pid:none) Arabidopsis thaliana ribosomal pro...   118   7e-26
X68050_1(X68050|pid:none) N.tabacum mRNA for ribosomal protein S6.    107   1e-22
EU962317_1(EU962317|pid:none) Zea mays clone 241747 unknown mRNA.     106   2e-22
EU953072_1(EU953072|pid:none) Zea mays clone 1380123 unknown mRNA.    102   5e-21
FN357429_3(FN357429|pid:none) Schistosoma mansoni genome sequenc...    95   9e-19
BC061437_1(BC061437|pid:none) Xenopus tropicalis 40S ribosomal p...    94   1e-18
FN316172_1(FN316172|pid:none) Schistosoma japonicum isolate Anhu...    94   1e-18
AY857463_1(AY857463|pid:none) Suberites domuncula S6 mRNA, compl...    94   1e-18
FN316170_1(FN316170|pid:none) Schistosoma japonicum isolate Anhu...    94   1e-18
FN316171_1(FN316171|pid:none) Schistosoma japonicum isolate Anhu...    94   1e-18
BC013296_1(BC013296|pid:none) Homo sapiens ribosomal protein S6,...    92   4e-18
(P47838) RecName: Full=40S ribosomal protein S6;  &JC4145(JC4145...    92   4e-18
AK028205_1(AK028205|pid:none) Mus musculus 11 days embryo whole ...    92   4e-18
BC009427_1(BC009427|pid:none) Homo sapiens ribosomal protein S6,...    92   4e-18
EF564256_1(EF564256|pid:none) Capra hircus ribosomal protein S6 ...    92   4e-18
AB266729_1(AB266729|pid:none) Crocodylus siamensis RPS6 mRNA for...    92   4e-18
(P62753) RecName: Full=40S ribosomal protein S6; AltName: Full=P...    92   4e-18
(Q5E995) RecName: Full=40S ribosomal protein S6;  &AY911358_1(AY...    92   4e-18
AB326221_1(AB326221|pid:none) Gekko hokouensis RPS6 mRNA for rib...    92   4e-18
AJ011393_1(AJ011393|pid:none) Crocodylus niloticus mRNA for ribo...    92   4e-18
AY190727_1(AY190727|pid:none) Pagrus major S6 ribosomal protein ...    92   6e-18
EF408828_1(EF408828|pid:none) Poecilia reticulata ribosomal prot...    92   6e-18
CP000583_278(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...    91   9e-18
BT079692_1(BT079692|pid:none) Esox lucius clone eluc-evq-518-302...    91   9e-18
BC075953_1(BC075953|pid:none) Danio rerio zgc:92237, mRNA (cDNA ...    91   1e-17
BC152627_1(BC152627|pid:none) Danio rerio zgc:92237, mRNA (cDNA ...    91   1e-17
DQ223557_1(DQ223557|pid:none) Ovis aries clone TO-DOWN-P1-2 ribo...    91   1e-17
BT082196_1(BT082196|pid:none) Anoplopoma fimbria clone afim-evh-...    91   1e-17
AK166680_1(AK166680|pid:none) Mus musculus blastocyst blastocyst...    91   1e-17
BC061628_1(BC061628|pid:none) Xenopus tropicalis ribosomal prote...    91   2e-17
(P39017) RecName: Full=40S ribosomal protein S6;  &AF020551_1(AF...    91   2e-17
(Q90YR8) RecName: Full=40S ribosomal protein S6;  &AF402814_1(AF...    91   2e-17
J03537_1(J03537|pid:none) Human ribosomal protein S6 mRNA, compl...    90   2e-17
BT043897_1(BT043897|pid:none) Salmo salar clone HM5_1863 ribosom...    90   2e-17
DQ884434_1(DQ884434|pid:none) Karlodinium micrum clone Kmi-5p-cD...    90   3e-17
AY521658_1(AY521658|pid:none) Pseudopleuronectes americanus 40S ...    89   4e-17
(O01727) RecName: Full=40S ribosomal protein S6;  &Z83268_1(Z832...    89   4e-17
BT074485_1(BT074485|pid:none) Osmerus mordax clone omor-rgc-502-...    89   5e-17
FM992691_114(FM992691|pid:none) Candida dubliniensis CD36 chromo...    89   6e-17
AJ438987_1(AJ438987|pid:none) Paracentrotus lividus mRNA for S6 ...    89   6e-17
CP001323_156(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    88   8e-17
AY130374_1(AY130374|pid:none) Scyliorhinus canicula ribosomal pr...    88   8e-17
BT074499_1(BT074499|pid:none) Osmerus mordax clone omor-eva-507-...    88   8e-17
FN392322_89(FN392322|pid:none) Pichia pastoris GS115 chromosome ...    88   8e-17
FN392322_962(FN392322|pid:none) Pichia pastoris GS115 chromosome...    88   1e-16
CR940348_471(CR940348|pid:none) Theileria annulata strain Ankara...    87   1e-16
EF675777_1(EF675777|pid:none) Artemia franciscana ribosomal prot...    87   1e-16
AY752838_1(AY752838|pid:none) Culicoides sonorensis clone CsRPS6...    87   1e-16
(Q9YGF2) RecName: Full=40S ribosomal protein S6;  &AF009665_1(AF...    87   1e-16
AY237124_1(AY237124|pid:none) Anopheles stephensi ribosomal prot...    87   2e-16
DQ213881_1(DQ213881|pid:none) Taeniopygia guttata clone 0058P001...    86   4e-16
U43281_19(U43281|pid:none) Saccharomyces cerevisiae chromosome X...    86   4e-16
CU928178_624(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    86   4e-16
(Q6BXH8) RecName: Full=40S ribosomal protein S6;  &CR382134_126(...    86   4e-16
BX842594_1(BX842594|pid:none) Neurospora crassa DNA linkage grou...    86   5e-16
(Q9U761) RecName: Full=40S ribosomal protein S6;                       85   7e-16
AF154067_1(AF154067|pid:none) Aedes aegypti ribosomal protein S6...    85   7e-16
(Q2PQM1) RecName: Full=40S ribosomal protein S6;  &DQ307202_1(DQ...    85   7e-16
(P41798) RecName: Full=40S ribosomal protein S6; AltName: Full=R...    85   7e-16
AJ001813_1(AJ001813|pid:none) Strongyloides ratti mRNA for Sr-ri...    85   9e-16
EU558336_1(EU558336|pid:none) Phoronis muelleri putative 40S rib...    85   9e-16
EF070448_1(EF070448|pid:none) Maconellicoccus hirsutus clone WHM...    85   9e-16
BT030942_1(BT030942|pid:none) Drosophila melanogaster IP19982 fu...    84   1e-15
(Q6FJH3) RecName: Full=40S ribosomal protein S6;  &CR380954_239(...    84   1e-15
(Q94624) RecName: Full=40S ribosomal protein S6;  &U64795_1(U647...    84   1e-15
AE014298_1126(AE014298|pid:none) Drosophila melanogaster chromos...    84   1e-15
AY232048_1(AY232048|pid:none) Drosophila yakuba clone yak-ad_RpS...    84   1e-15
(Q74ZK3) RecName: Full=40S ribosomal protein S6;  &AE016820_566(...    84   2e-15
AM048933_1(AM048933|pid:none) Carabus granulatus partial mRNA fo...    84   2e-15
EF087507_1(EF087507|pid:none) Picea sitchensis clone WS02736_D18...    84   2e-15
(Q9BMX5) RecName: Full=40S ribosomal protein S6;  &AF294917_1(AF...    83   3e-15
BT078527_1(BT078527|pid:none) Lepeophtheirus salmonis clone lsal...    83   3e-15
AY769320_1(AY769320|pid:none) Bombyx mori ribosomal protein S6 (...    83   3e-15
EF207950_1(EF207950|pid:none) Heliconius melpomene ribosomal pro...    82   4e-15
AM910994_124(AM910994|pid:none) Plasmodium knowlesi strain H chr...    82   6e-15
AL844509_408(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    82   7e-15
AY292619_1(AY292619|pid:none) Oikopleura dioica 40S ribosomal pr...    81   1e-14
(Q6CM04) RecName: Full=40S ribosomal protein S6;  &CR382125_1044...    80   3e-14
AM270079_28(AM270079|pid:none) Aspergillus niger contig An04c018...    78   1e-13
BT044673_1(BT044673|pid:none) Salmo salar clone ssal-rgf-002-237...    78   1e-13
CP000882_69(CP000882|pid:none) Hemiselmis andersenii chromosome ...    77   1e-13
AF517863_1(AF517863|pid:none) Griffithsia japonica isolate Gj416...    77   2e-13
AP007155_983(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    75   9e-13
CP001142_217(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...    75   9e-13
(Q54UU3) RecName: Full=40S ribosomal protein S6;                       73   3e-12
AB002749_1(AB002749|pid:none) Entamoeba histolytica mRNA for rib...    72   5e-12
(Q9NE83) RecName: Full=40S ribosomal protein S6;  &CP000081_197(...    71   1e-11
AM494970_84(AM494970|pid:none) Leishmania braziliensis chromosom...    71   1e-11
DQ530504_1(DQ530504|pid:none) Chironomus sp. AF-2006 ribosomal p...    67   2e-10
DQ530506_1(DQ530506|pid:none) Simulium sp. AF-2006 ribosomal pro...    67   2e-10
FJ502003_1(FJ502003|pid:none) Aristichthys nobilis clone A24 rib...    65   9e-10
(Q8SRY0) RecName: Full=40S ribosomal protein S6;  &AL590445_69(A...    55   1e-06
L02074_2(L02074|pid:none) Drosophila melanogaster ribosomal prot...    54   2e-06
EU962557_1(EU962557|pid:none) Zea mays clone 243744 unknown mRNA.      49   5e-05
AY095266_1(AY095266|pid:none) Culicoides sonorensis RPS6 mRNA, p...    41   0.011
AY237125_1(AY237125|pid:none) Telmatoscopus sp. AMF-2003 ribosom...    40   0.033
(O26360) RecName: Full=30S ribosomal protein S6e;  &AE000666_257...    39   0.043
CP000968_1007(CP000968|pid:none) Candidatus Korarchaeum cryptofi...    37   0.16
BC052613_1(BC052613|pid:none) Homo sapiens ribosomal protein S6 ...    37   0.21
DQ530503_1(DQ530503|pid:none) Bittacomorpha clavipes ribosomal p...    37   0.28
(A5UJM8) RecName: Full=30S ribosomal protein S6e;  &CP000678_201...    36   0.47
(Q9HLA6) RecName: Full=30S ribosomal protein S6e;  &AL445063_319...    36   0.47
GM017008_38(GM017008|pid:none) Sequence 1838 from Patent EP19234...    35   1.1
(Q5JDK8) RecName: Full=30S ribosomal protein S6e;  &AP006878_195...    35   1.1
(B6YW70) RecName: Full=30S ribosomal protein S6e;  &CP000855_195...    34   1.4
CR937010_34(CR937010|pid:none) uncultured archaeon fos0114d2+13a9.     34   1.4
EU190423_1(EU190423|pid:none) Helicoverpa armigera RpS6 (RpS6) g...    34   1.4
(Q8TQL4) RecName: Full=30S ribosomal protein S6e;  &AE010299_148...    34   1.8
(A3CSP5) RecName: Full=30S ribosomal protein S6e;  &CP000562_460...    33   4.0
(Q9UYS3) RecName: Full=30S ribosomal protein S6e;  &AJ248287_198...    32   8.9
(Q978W7) RecName: Full=30S ribosomal protein S6e;  &BA000011_129...    32   8.9

>EU284819_1(EU284819|pid:none) TSA: Elaeis guineensis EgEfMPOB00004
           S6 ribosomal protein mRNA, complete cds.
          Length = 249

 Score =  127 bits (320), Expect = 9e-29
 Identities = 63/89 (70%), Positives = 67/89 (75%)
 Frame = +3

Query: 3   EFKGYVXKIMGGCDKQGFPMKQGVLTQGRVQLLMHRGVSCFXXXXXXXXXXXXXXXXXCI 182
           EFKGYV KIMGGCDKQGFPMKQGVLT GRV+LL+HRG  CF                 CI
Sbjct: 44  EFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCI 103

Query: 183 VSPDLSVLNLVIVKQGDNDLXGLTDIEKP 269
           VSPDLSVLNLVIVK+G+NDL GLTDIEKP
Sbjct: 104 VSPDLSVLNLVIVKKGENDLPGLTDIEKP 132

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 444,777,841
Number of extensions: 8228751
Number of successful extensions: 13345
Number of sequences better than 10.0: 126
Number of HSP's gapped: 13236
Number of HSP's successfully gapped: 126
Length of query: 89
Length of database: 1,040,966,779
Length adjustment: 59
Effective length of query: 30
Effective length of database: 851,913,964
Effective search space: 25557418920
Effective search space used: 25557418920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)
PSORT 

 psg: 0.63  gvh: 0.46  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.10
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.50  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for Contig-U07450-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 1
FC-IC (SUB) 1