Contig-U07986-1 |
Contig ID |
Contig-U07986-1 |
Contig update |
2002. 5. 9 |
Contig sequence |
|
Gap |
gap included |
Contig length |
684 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
3999300 |
End point |
3999985 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U07986 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.12 |
Homology vs DNA |
Query= Contig-U07986-1 (Contig-U07986-1Q) /CSM_Contig/Contig-U07986-1Q.Seq.d (694 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C90883) Dictyostelium discoideum slug cDNA, clone SSJ266. 613 e-171 1 (C91460) Dictyostelium discoideum slug cDNA, clone SSK308. 309 7e-80 1 (BJ391292) Dictyostelium discoideum cDNA clone:dds13d01, 5' ... 303 5e-78 1 (BJ400388) Dictyostelium discoideum cDNA clone:dds13d01, 3' ... 147 6e-31 1 (DK168312) Oryzias latipes cDNA, clone: olec29k02, 3' end. 58 4e-08 2 (DK145270) Oryzias latipes cDNA, clone: olec29k02, 5' end. 58 4e-08 2 (BJ873346) Oryzias latipes cDNA clone:MF01ASD001i04, 5' end. 58 4e-08 2 (BJ886792) Oryzias latipes cDNA clone:MF01ASD001i04, 3' end. 58 4e-08 2 (AC154540) Mus musculus BAC clone RP23-452G1 from chromosome... 60 5e-07 2 (BC108936) Mus musculus kininogen 1, mRNA (cDNA clone MGC:12... 52 5e-07 2 (D84435) Mus sp. mRNA for HMW prekininogen, complete cds. 52 5e-07 2 (CF616032) AGENCOURT_15764193 NIH_MGC_203 Mus musculus cDNA ... 52 5e-07 2 (AI117632) ui48c06.x1 Sugano mouse embryo mewa Mus musculus ... 52 5e-07 2 (EB605298) AGENCOURT_56954140 D. grimshawi EST Drosophila gr... 52 5e-07 2 (BH117528) RPCI-24-253H16.TJ RPCI-24 Mus musculus genomic cl... 52 6e-07 2 (AI195438) ui50d05.y1 Sugano mouse liver mlia Mus musculus c... 52 6e-07 2 (AA237351) mx15c10.r1 Soares mouse NML Mus musculus cDNA clo... 52 6e-07 2 (AI157699) ud96h01.r2 Soares_NMPu Mus musculus cDNA clone IM... 52 6e-07 2 (EB632239) AGENCOURT_57320859 D. grimshawi EST Drosophila gr... 52 2e-06 2 (EB624160) AGENCOURT_56973244 D. grimshawi EST Drosophila gr... 52 2e-06 2 (EB605907) AGENCOURT_56973243 D. grimshawi EST Drosophila gr... 52 2e-06 2 (EF692169) Trifolium repens clone CloverSSR-63_B12_047_1 mic... 64 7e-06 1 (CP000553) Prochlorococcus marinus str. NATL1A, complete gen... 62 3e-05 1 (CP000095) Prochlorococcus marinus str. NATL2A, complete gen... 62 3e-05 1 (EC763168) p-12-h8 Priapulus caudatus cDNA library Priapulus... 52 3e-05 2 (AC217126) Zea mays chromosome 6 clone CH201-119D10; ZMMBBc0... 52 1e-04 2 (CG159678) PUKEF37TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 52 1e-04 2 (BZ712535) OGBAK12TM ZM_0.7_1.5_KB Zea mays genomic clone ZM... 52 1e-04 2 (CC653938) OGUGW32TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 52 1e-04 2 (BZ528631) OGAIF02TC ZM2_0.7_1.5_KB Zea mays genomic clone Z... 52 1e-04 2 (EA108018) Sequence 1790 from patent US 7196245. 52 1e-04 2 (BM074079) MEST79-H12.T3 ISUM4-TN Zea mays cDNA clone MEST79... 52 1e-04 2 (CT027991) Mouse DNA sequence from clone RP23-418N2 on chrom... 60 1e-04 1 (AY660572) Mus musculus strain C57BL high molecular weight k... 60 1e-04 1 (AY462056) Mus musculus HMW kininogen-II mRNA, complete cds. 60 1e-04 1 (EE182471) ZM_BFc0165O19.f ZM_BFc Zea mays cDNA clone ZM_BFc... 52 1e-04 2 (AC022781) Mus musculus chromosome 11 clone RP23-199H17 map ... 58 3e-04 2 (AL683879) Mouse DNA sequence from clone RP23-36D5 on chromo... 58 5e-04 1 (AL591065) Mouse DNA sequence from clone RP23-199H17 on chro... 58 5e-04 1 (AC134445) Mus musculus BAC clone RP24-170M15 from 6, comple... 58 5e-04 1 (AC103346) Rattus norvegicus BAC CH230-2K7 (Children's Hosp... 58 5e-04 1 (AY680384) Pinus strobus homeobox transcription factor KN3 (... 58 5e-04 1 (AJ272526) Solanum tuberosum mRNA for urease accessory prote... 58 5e-04 1 (AC189210) Brassica rapa subsp. pekinensis clone KBrB007O13,... 58 5e-04 1 (AX647880) Sequence 2072 from Patent EP1270724. 58 5e-04 1 (AC079776) Homo sapiens BAC clone RP11-315H12 from 2, comple... 58 5e-04 1 (AC149823) Zea mays clone ZMMBBb0594O14, *** SEQUENCING IN P... 58 5e-04 1 (AC127855) Rattus norvegicus clone CH230-119P9, WORKING DRAF... 58 5e-04 1 (AC120683) Rattus norvegicus clone CH230-15D3, WORKING DRAFT... 58 5e-04 1 (AC096158) Rattus norvegicus clone CH230-11D17, WORKING DRAF... 58 5e-04 1 (AC095195) Rattus norvegicus clone CH230-5J23, WORKING DRAFT... 58 5e-04 1 (AC079450) Homo sapiens chromosome 2 clone RP11-355A3, WORKI... 58 5e-04 1 (AC226603) Zea mays chromosome 2 clone ZMMBBb-233J17; ZMMBBb... 58 5e-04 1 (AC203818) Zea mays chromosome 2 clone CH201-28M17; ZMMBBc00... 58 5e-04 1 (AC198892) Zea mays chromosome 9 clone CH201-371P6; ZMMBBc03... 58 5e-04 1 (AZ966946) 2M0237K11R Mouse 10kb plasmid UUGC2M library Mus ... 58 5e-04 1 (EJ181854) 1092344128271 Global-Ocean-Sampling_GS-27-01-01-1... 58 5e-04 1 (DX450967) BE2004_C15_R IASMA L2 HindIII BAC library Vitis v... 58 5e-04 1 (AJ854928) Brassica rapa subsp. pekinensis GSS, clone KBrH05... 58 5e-04 1 (CZ364492) ZMMBF0143H11f ZMMBF Zea mays genomic clone ZMMBF0... 58 5e-04 1 (CG365764) OG3AN10TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 58 5e-04 1 (CG365754) OG3AN10TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 58 5e-04 1 (CC758792) ZMMBBb0146C17.r ZMMBBb Zea mays subsp. mays genom... 58 5e-04 1 (CC736422) PUJAD36TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 58 5e-04 1 (BZ563171) pacs2-164_4123.y2 pacs2-164 Pseudomonas aeruginos... 58 5e-04 1 (BZ559840) pacs2-164_1894.x1 pacs2-164 Pseudomonas aeruginos... 58 5e-04 1 (BZ420975) if75a09.b2 WGS-ZmaysF (DH5a methyl filtered) Zea ... 58 5e-04 1 (BZ417105) if75a09.g2 WGS-ZmaysF (DH5a methyl filtered) Zea ... 58 5e-04 1 (EL489804) CHUS4932.b2_H10.ab1 CHU(LMS) puzzle sunflower Hel... 58 5e-04 1 (EL474789) CHUL2734.b1_K11.ab1 CHU(LMS) puzzle sunflower Hel... 58 5e-04 1 (EL360649) CCEM5342.b1_L16.ab1 CCE(LMS) endive Cichorium end... 58 5e-04 1 (CN841082) AGENCOURT_24954534 NIH_MGC_169 Mus musculus cDNA ... 58 5e-04 1 (CA377101) 655611 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 58 5e-04 1 (CA371312) 651716 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 58 5e-04 1 (CA359013) 631858 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 58 5e-04 1 (CA356945) 629230 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 58 5e-04 1 (CA345813) 676553 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 58 5e-04 1 (CA345172) 675734 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 58 5e-04 1 (BX889971) AGENAE Rainbow trout multi-tissues-normalized + 2... 58 5e-04 1 (BX865734) AGENAE Rainbow trout multi-tissues - normalized +... 58 5e-04 1 (FD582080) RS3EU36JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ... 58 5e-04 1 (FM200053) Salmonella enterica subsp. enterica serovar Parat... 58 5e-04 1 (EU595747) Pseudomonas aeruginosa strain PACS171b clone fa13... 58 5e-04 1 (CP001043) Burkholderia phymatum STM815 chromosome 1, comple... 58 5e-04 1 (CP000947) Haemophilus somnus 2336, complete genome. 58 5e-04 1 (CP000886) Salmonella enterica subsp. enterica serovar Parat... 58 5e-04 1 (CP000878) Prochlorococcus marinus str. MIT 9211, complete g... 58 5e-04 1 (CP000826) Serratia proteamaculans 568, complete genome. 58 5e-04 1 (CP000680) Pseudomonas mendocina ymp, complete genome. 58 5e-04 1 (CP000662) Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA0... 58 5e-04 1 (CP000469) Shewanella sp. ANA-3, complete genome. 58 5e-04 1 (CP000446) Shewanella sp. MR-4, complete genome. 58 5e-04 1 (CP000444) Shewanella sp. MR-7, complete genome. 58 5e-04 1 (CP000285) Chromohalobacter salexigens DSM 3043, complete ge... 58 5e-04 1 (BX572097) Prochlorococcus marinus MIT9313 complete genome; ... 58 5e-04 1 (AL627277) Salmonella enterica serovar Typhi (Salmonella typ... 58 5e-04 1 (AF141971) Haemophilus ducreyi HI0318 homolog gene, partial ... 58 5e-04 1 (AE017143) Haemophilus ducreyi strain 35000HP complete genome. 58 5e-04 1 (AE014613) Salmonella enterica subsp. enterica serovar Typhi... 58 5e-04 1 (AE014299) Shewanella oneidensis MR-1, complete genome. 58 5e-04 1
>(C90883) Dictyostelium discoideum slug cDNA, clone SSJ266. Length = 390
Score = 613 bits (309), Expect = e-171 Identities = 315/315 (100%) Strand = Plus / Plus
Query: 306 ttcgcccatccaattccaattttaccaatgtttgccttaatttgcgttgctaaaattttc 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ttcgcccatccaattccaattttaccaatgtttgccttaatttgcgttgctaaaattttc 60
Query: 366 gttagtggtggcctcgatggtgcacccgcccccattcccatgggctttagtcaccattac 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gttagtggtggcctcgatggtgcacccgcccccattcccatgggctttagtcaccattac 120
Query: 426 cctccaagtccccatgctgctggngaaattgatttaaatatttttccaaatggtgacgcc 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cctccaagtccccatgctgctggngaaattgatttaaatatttttccaaatggtgacgcc 180
Query: 486 gccgccgttgttntaaatggagatccagaaggggattgcccaaaagatgttgaaaaagaa 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gccgccgttgttntaaatggagatccagaaggggattgcccaaaagatgttgaaaaagaa 240
Query: 546 catggtcatggtcatggtcatgggcatggtcataatagtagtaatagtagttgtaatggt 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 catggtcatggtcatggtcatgggcatggtcataatagtagtaatagtagttgtaatggt 300
Query: 606 catggacatggtttt 620 ||||||||||||||| Sbjct: 301 catggacatggtttt 315
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 378,764,065 Number of extensions: 26080262 Number of successful extensions: 2204482 Number of sequences better than 10.0: 966 Length of query: 694 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 670 Effective length of database: 97,308,875,965 Effective search space: 65196946896550 Effective search space used: 65196946896550 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 6.24 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |