Contig-U07986-1
Contig ID Contig-U07986-1
Contig update 2002. 5. 9
Contig sequence
>Contig-U07986-1 (Contig-U07986-1Q) /CSM_Contig/Contig-U07986-1Q.Seq.d
TAAATAAATAAAAAAATAAAAAATAAAAATAAAATATATTTAAAAAAATA
AATTAATAAAACTAAAAATAGTAAAATAAGTTGGAAAAAAAAATAAAAAA
TAAAAAAATAAAAAATTAAAAATAAAAAAACTGCAAAGGACATAAAAAAA
CAAAAAAAAAAAAAAAAATAAAAAAATAAAAATCGATCTTTATAATAATT
TATATATTTTAATCCCTAAACAAAAATAATAGTTAATACGAAAAAATAGA
TAATTTATTTAGTAATAATTTTTTTTTAAAAATATAAATAATAAG-----
-----TTCGCCCATCCAATTCCAATTTTACCAATGTTTGCCTTAATTTGC
GTTGCTAAAATTTTCGTTAGTGGTGGCCTCGATGGTGCACCCGCCCCCAT
TCCCATGGGCTTTAGTCACCATTACCCTCCAAGTCCCCATGCTGCTGGNG
AAATTGATTTAAATATTTTTCCAAATGGTGACGCCGCCGCCGTTGTTNTA
AATGGAGATCCAGAAGGGGATTGCCCAAAAGATGTTGAAAAAGAACATGG
TCATGGTCATGGTCATGGGCATGGTCATAATAGTAGTAATAGTAGTTGTA
ATGGTCATGGACATGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Gap gap included
Contig length 684
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3999300
End point 3999985
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U07986
List of clone(s)

est1=SSJ266F,1,296
est2=SSJ266Z,297,686
Translated Amino Acid sequence
k*ikk*kikikyi*knkliklkivk*vgkknkk*knkklkikklqrt*knkkkkknkkik
idlynnlyilipkqk**lirknr*fi***FFFKNINNK---

---FAHPIPILPMFALICVAKIFVSGGLDGAPAPIPMGFSHHYPPSPHAAGEIDLNIFPN
GDAAAVVXNGDPEGDCPKDVEKEHGHGHGHGHGHNSSNSSCNGHGHGFKKKKKKKKKKKK
KKKKKKKKKKKK


Translated Amino Acid sequence (All Frames)
Frame A:
*inkkiknknkiylkk*inktknskiswkkk*kikk*kiknkktakdikkqkkkkk*knk
nrsl**fiyfnp*tkiivntkk*iiylviiff*kyk**---

---FAHPIPILPMFALICVAKIFVSGGLDGAPAPIPMGFSHHYPPSPHAAGEIDLNIFPN
GDAAAVVXNGDPEGDCPKDVEKEHGHGHGHGHGHNSSNSSCNGHGHGFKKKKKKKKKKKK
KKKKKKKKKKKK

Frame B:
k*ikk*kikikyi*knkliklkivk*vgkknkk*knkklkikklqrt*knkkkkknkkik
idlynnlyilipkqk**lirknr*fi***FFFKNINNK---

---spiqfqfyqclp*fallkfslvvasmvhpppfpwalvtitlqvpmllxkli*iffqm
vtppplx*meiqkgiaqkmlkknmvmvmvmgmviivvivvvmvmdmvlkkkkkkkkkkkk
kkkkkkkkkkkk

Frame C:
nk*knkk*k*nifkkin**n*k**nklekkiknkkikn*k*knckghkktkkkkkikk*k
sifiiiyif*slnknns*yekidnlfsnnfflki*ii---

---rpsnsnftnvclnlrc*nfr*wwprwctrphshgl*splpskspccwxn*fkyfskw
*rrrrcxkwrsrrglpkrc*krtwswswswaws******l*wswtwf*kkkkkkkkkkkk
kkkkkkkkkkkk

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U07986-1 (Contig-U07986-1Q)
/CSM_Contig/Contig-U07986-1Q.Seq.d
(694 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U07986-1 (Contig-U07986-1Q) /CSM_Contig/Conti... 743 0.0
Contig-U08405-1 (Contig-U08405-1Q) /CSM_Contig/Conti... 309 2e-84
Contig-U04565-1 (Contig-U04565-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U03720-1 (Contig-U03720-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U11465-1 (Contig-U11465-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U08269-1 (Contig-U08269-1Q) /CSM_Contig/Conti... 38 0.012
Contig-U13433-1 (Contig-U13433-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U12770-1 (Contig-U12770-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U12474-1 (Contig-U12474-1Q) /CSM_Contig/Conti... 36 0.049
Contig-U11734-1 (Contig-U11734-1Q) /CSM_Contig/Conti... 36 0.049

>Contig-U07986-1 (Contig-U07986-1Q) /CSM_Contig/Contig-U07986-1Q.Seq.d
Length = 694

Score = 743 bits (375), Expect = 0.0
Identities = 429/438 (97%)
Strand = Plus / Plus


Query: 183 tcgatctttataataatttatatattttaatccctaaacaaaaataatagttaatacgaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tcgatctttataataatttatatattttaatccctaaacaaaaataatagttaatacgaa 242


Query: 243 aaaatagataatttatttagtaataannnnnnnnnaaaaatataaataataagnnnnnnn 302
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 243 aaaatagataatttatttagtaataatttttttttaaaaatataaataataagnnnnnnn 302


Query: 303 nnnttcgcccatccaattccaattttaccaatgtttgccttaatttgcgttgctaaaatt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 nnnttcgcccatccaattccaattttaccaatgtttgccttaatttgcgttgctaaaatt 362


Query: 363 ttcgttagtggtggcctcgatggtgcacccgcccccattcccatgggctttagtcaccat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttcgttagtggtggcctcgatggtgcacccgcccccattcccatgggctttagtcaccat 422


Query: 423 taccctccaagtccccatgctgctggngaaattgatttaaatatttttccaaatggtgac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 taccctccaagtccccatgctgctggngaaattgatttaaatatttttccaaatggtgac 482


Query: 483 gccgccgccgttgttntaaatggagatccagaaggggattgcccaaaagatgttgaaaaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gccgccgccgttgttntaaatggagatccagaaggggattgcccaaaagatgttgaaaaa 542


Query: 543 gaacatggtcatggtcatggtcatgggcatggtcataatagtagtaatagtagttgtaat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gaacatggtcatggtcatggtcatgggcatggtcataatagtagtaatagtagttgtaat 602


Query: 603 ggtcatggacatggtttt 620
||||||||||||||||||
Sbjct: 603 ggtcatggacatggtttt 620


>Contig-U08405-1 (Contig-U08405-1Q) /CSM_Contig/Contig-U08405-1Q.Seq.d
Length = 990

Score = 309 bits (156), Expect = 2e-84
Identities = 274/314 (87%)
Strand = Plus / Plus


Query: 306 ttcgcccatccaattccaattttaccaatgtttgccttaatttgcgttgctaaaattttc 365
||||| ||| ||||| ||||| || |||||||||| |||||||| |||| |||||||||
Sbjct: 132 ttcgctcatacaattacaattgtaacaatgtttgcattaatttgtgttgataaaatttta 191


Query: 366 gttagtggtggcctcgatggtgcacccgcccccattcccatgggctttagtcaccattac 425
||||||||||| || ||||||| | ||| || || || ||||| ||| ||||| ||| ||
Sbjct: 192 gttagtggtggtctagatggtgaagccgaccacaatcacatggacttaagtcaacataac 251


Query: 426 cctccaagtccccatgctgctggngaaattgatttaaatatttttccaaatggtgacgcc 485
| ||||||||| ||||||||||| ||||||||||||||||||| | |||||||||||| |
Sbjct: 252 catccaagtccacatgctgctggtgaaattgatttaaatatttatacaaatggtgacgac 311


Query: 486 gccgccgttgttntaaatggagatccagaaggggattgcccaaaagatgttgaaaaagaa 545
| || || || | |||||| ||||| ||||| |||| || ||||||||| ||||||||||
Sbjct: 312 gacgacgatgatgtaaatgaagatcaagaagaggatagcacaaaagatgatgaaaaagaa 371


Query: 546 catggtcatggtcatggtcatgggcatggtcataatagtagtaatagtagttgtaatggt 605
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 372 catggtcatggtcatggtcatggacatggtcataatagtagtaatagtagtagtaatggt 431


Query: 606 catggacatggttt 619
||||||||||||||
Sbjct: 432 catggacatggttt 445


Score = 38.2 bits (19), Expect = 0.012
Identities = 22/23 (95%)
Strand = Plus / Plus


Query: 538 aaaaagaacatggtcatggtcat 560
||||||| |||||||||||||||
Sbjct: 466 aaaaagagcatggtcatggtcat 488


Score = 30.2 bits (15), Expect = 3.0
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 552 catggtcatggtcat 566
|||||||||||||||
Sbjct: 474 catggtcatggtcat 488


>Contig-U04565-1 (Contig-U04565-1Q) /CSM_Contig/Contig-U04565-1Q.Seq.d
Length = 563

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 315 ccaattccaattttaccaat 334
||||||||||||||||||||
Sbjct: 112 ccaattccaattttaccaat 93


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8629
Number of Sequences: 6905
Number of extensions: 8629
Number of successful extensions: 1326
Number of sequences better than 10.0: 210
length of query: 694
length of database: 5,674,871
effective HSP length: 16
effective length of query: 678
effective length of database: 5,564,391
effective search space: 3772657098
effective search space used: 3772657098
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.12
Homology vs DNA
Query= Contig-U07986-1 (Contig-U07986-1Q) /CSM_Contig/Contig-U07986-1Q.Seq.d
(694 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C90883) Dictyostelium discoideum slug cDNA, clone SSJ266. 613 e-171 1
(C91460) Dictyostelium discoideum slug cDNA, clone SSK308. 309 7e-80 1
(BJ391292) Dictyostelium discoideum cDNA clone:dds13d01, 5' ... 303 5e-78 1
(BJ400388) Dictyostelium discoideum cDNA clone:dds13d01, 3' ... 147 6e-31 1
(DK168312) Oryzias latipes cDNA, clone: olec29k02, 3' end. 58 4e-08 2
(DK145270) Oryzias latipes cDNA, clone: olec29k02, 5' end. 58 4e-08 2
(BJ873346) Oryzias latipes cDNA clone:MF01ASD001i04, 5' end. 58 4e-08 2
(BJ886792) Oryzias latipes cDNA clone:MF01ASD001i04, 3' end. 58 4e-08 2
(AC154540) Mus musculus BAC clone RP23-452G1 from chromosome... 60 5e-07 2
(BC108936) Mus musculus kininogen 1, mRNA (cDNA clone MGC:12... 52 5e-07 2
(D84435) Mus sp. mRNA for HMW prekininogen, complete cds. 52 5e-07 2
(CF616032) AGENCOURT_15764193 NIH_MGC_203 Mus musculus cDNA ... 52 5e-07 2
(AI117632) ui48c06.x1 Sugano mouse embryo mewa Mus musculus ... 52 5e-07 2
(EB605298) AGENCOURT_56954140 D. grimshawi EST Drosophila gr... 52 5e-07 2
(BH117528) RPCI-24-253H16.TJ RPCI-24 Mus musculus genomic cl... 52 6e-07 2
(AI195438) ui50d05.y1 Sugano mouse liver mlia Mus musculus c... 52 6e-07 2
(AA237351) mx15c10.r1 Soares mouse NML Mus musculus cDNA clo... 52 6e-07 2
(AI157699) ud96h01.r2 Soares_NMPu Mus musculus cDNA clone IM... 52 6e-07 2
(EB632239) AGENCOURT_57320859 D. grimshawi EST Drosophila gr... 52 2e-06 2
(EB624160) AGENCOURT_56973244 D. grimshawi EST Drosophila gr... 52 2e-06 2
(EB605907) AGENCOURT_56973243 D. grimshawi EST Drosophila gr... 52 2e-06 2
(EF692169) Trifolium repens clone CloverSSR-63_B12_047_1 mic... 64 7e-06 1
(CP000553) Prochlorococcus marinus str. NATL1A, complete gen... 62 3e-05 1
(CP000095) Prochlorococcus marinus str. NATL2A, complete gen... 62 3e-05 1
(EC763168) p-12-h8 Priapulus caudatus cDNA library Priapulus... 52 3e-05 2
(AC217126) Zea mays chromosome 6 clone CH201-119D10; ZMMBBc0... 52 1e-04 2
(CG159678) PUKEF37TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 52 1e-04 2
(BZ712535) OGBAK12TM ZM_0.7_1.5_KB Zea mays genomic clone ZM... 52 1e-04 2
(CC653938) OGUGW32TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 52 1e-04 2
(BZ528631) OGAIF02TC ZM2_0.7_1.5_KB Zea mays genomic clone Z... 52 1e-04 2
(EA108018) Sequence 1790 from patent US 7196245. 52 1e-04 2
(BM074079) MEST79-H12.T3 ISUM4-TN Zea mays cDNA clone MEST79... 52 1e-04 2
(CT027991) Mouse DNA sequence from clone RP23-418N2 on chrom... 60 1e-04 1
(AY660572) Mus musculus strain C57BL high molecular weight k... 60 1e-04 1
(AY462056) Mus musculus HMW kininogen-II mRNA, complete cds. 60 1e-04 1
(EE182471) ZM_BFc0165O19.f ZM_BFc Zea mays cDNA clone ZM_BFc... 52 1e-04 2
(AC022781) Mus musculus chromosome 11 clone RP23-199H17 map ... 58 3e-04 2
(AL683879) Mouse DNA sequence from clone RP23-36D5 on chromo... 58 5e-04 1
(AL591065) Mouse DNA sequence from clone RP23-199H17 on chro... 58 5e-04 1
(AC134445) Mus musculus BAC clone RP24-170M15 from 6, comple... 58 5e-04 1
(AC103346) Rattus norvegicus BAC CH230-2K7 (Children's Hosp... 58 5e-04 1
(AY680384) Pinus strobus homeobox transcription factor KN3 (... 58 5e-04 1
(AJ272526) Solanum tuberosum mRNA for urease accessory prote... 58 5e-04 1
(AC189210) Brassica rapa subsp. pekinensis clone KBrB007O13,... 58 5e-04 1
(AX647880) Sequence 2072 from Patent EP1270724. 58 5e-04 1
(AC079776) Homo sapiens BAC clone RP11-315H12 from 2, comple... 58 5e-04 1
(AC149823) Zea mays clone ZMMBBb0594O14, *** SEQUENCING IN P... 58 5e-04 1
(AC127855) Rattus norvegicus clone CH230-119P9, WORKING DRAF... 58 5e-04 1
(AC120683) Rattus norvegicus clone CH230-15D3, WORKING DRAFT... 58 5e-04 1
(AC096158) Rattus norvegicus clone CH230-11D17, WORKING DRAF... 58 5e-04 1
(AC095195) Rattus norvegicus clone CH230-5J23, WORKING DRAFT... 58 5e-04 1
(AC079450) Homo sapiens chromosome 2 clone RP11-355A3, WORKI... 58 5e-04 1
(AC226603) Zea mays chromosome 2 clone ZMMBBb-233J17; ZMMBBb... 58 5e-04 1
(AC203818) Zea mays chromosome 2 clone CH201-28M17; ZMMBBc00... 58 5e-04 1
(AC198892) Zea mays chromosome 9 clone CH201-371P6; ZMMBBc03... 58 5e-04 1
(AZ966946) 2M0237K11R Mouse 10kb plasmid UUGC2M library Mus ... 58 5e-04 1
(EJ181854) 1092344128271 Global-Ocean-Sampling_GS-27-01-01-1... 58 5e-04 1
(DX450967) BE2004_C15_R IASMA L2 HindIII BAC library Vitis v... 58 5e-04 1
(AJ854928) Brassica rapa subsp. pekinensis GSS, clone KBrH05... 58 5e-04 1
(CZ364492) ZMMBF0143H11f ZMMBF Zea mays genomic clone ZMMBF0... 58 5e-04 1
(CG365764) OG3AN10TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 58 5e-04 1
(CG365754) OG3AN10TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 58 5e-04 1
(CC758792) ZMMBBb0146C17.r ZMMBBb Zea mays subsp. mays genom... 58 5e-04 1
(CC736422) PUJAD36TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 58 5e-04 1
(BZ563171) pacs2-164_4123.y2 pacs2-164 Pseudomonas aeruginos... 58 5e-04 1
(BZ559840) pacs2-164_1894.x1 pacs2-164 Pseudomonas aeruginos... 58 5e-04 1
(BZ420975) if75a09.b2 WGS-ZmaysF (DH5a methyl filtered) Zea ... 58 5e-04 1
(BZ417105) if75a09.g2 WGS-ZmaysF (DH5a methyl filtered) Zea ... 58 5e-04 1
(EL489804) CHUS4932.b2_H10.ab1 CHU(LMS) puzzle sunflower Hel... 58 5e-04 1
(EL474789) CHUL2734.b1_K11.ab1 CHU(LMS) puzzle sunflower Hel... 58 5e-04 1
(EL360649) CCEM5342.b1_L16.ab1 CCE(LMS) endive Cichorium end... 58 5e-04 1
(CN841082) AGENCOURT_24954534 NIH_MGC_169 Mus musculus cDNA ... 58 5e-04 1
(CA377101) 655611 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 58 5e-04 1
(CA371312) 651716 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 58 5e-04 1
(CA359013) 631858 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 58 5e-04 1
(CA356945) 629230 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 58 5e-04 1
(CA345813) 676553 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 58 5e-04 1
(CA345172) 675734 NCCCWA 1RT Oncorhynchus mykiss cDNA clone ... 58 5e-04 1
(BX889971) AGENAE Rainbow trout multi-tissues-normalized + 2... 58 5e-04 1
(BX865734) AGENAE Rainbow trout multi-tissues - normalized +... 58 5e-04 1
(FD582080) RS3EU36JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ... 58 5e-04 1
(FM200053) Salmonella enterica subsp. enterica serovar Parat... 58 5e-04 1
(EU595747) Pseudomonas aeruginosa strain PACS171b clone fa13... 58 5e-04 1
(CP001043) Burkholderia phymatum STM815 chromosome 1, comple... 58 5e-04 1
(CP000947) Haemophilus somnus 2336, complete genome. 58 5e-04 1
(CP000886) Salmonella enterica subsp. enterica serovar Parat... 58 5e-04 1
(CP000878) Prochlorococcus marinus str. MIT 9211, complete g... 58 5e-04 1
(CP000826) Serratia proteamaculans 568, complete genome. 58 5e-04 1
(CP000680) Pseudomonas mendocina ymp, complete genome. 58 5e-04 1
(CP000662) Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA0... 58 5e-04 1
(CP000469) Shewanella sp. ANA-3, complete genome. 58 5e-04 1
(CP000446) Shewanella sp. MR-4, complete genome. 58 5e-04 1
(CP000444) Shewanella sp. MR-7, complete genome. 58 5e-04 1
(CP000285) Chromohalobacter salexigens DSM 3043, complete ge... 58 5e-04 1
(BX572097) Prochlorococcus marinus MIT9313 complete genome; ... 58 5e-04 1
(AL627277) Salmonella enterica serovar Typhi (Salmonella typ... 58 5e-04 1
(AF141971) Haemophilus ducreyi HI0318 homolog gene, partial ... 58 5e-04 1
(AE017143) Haemophilus ducreyi strain 35000HP complete genome. 58 5e-04 1
(AE014613) Salmonella enterica subsp. enterica serovar Typhi... 58 5e-04 1
(AE014299) Shewanella oneidensis MR-1, complete genome. 58 5e-04 1

>(C90883) Dictyostelium discoideum slug cDNA, clone SSJ266.
Length = 390

Score = 613 bits (309), Expect = e-171
Identities = 315/315 (100%)
Strand = Plus / Plus


Query: 306 ttcgcccatccaattccaattttaccaatgtttgccttaatttgcgttgctaaaattttc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcgcccatccaattccaattttaccaatgtttgccttaatttgcgttgctaaaattttc 60


Query: 366 gttagtggtggcctcgatggtgcacccgcccccattcccatgggctttagtcaccattac 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttagtggtggcctcgatggtgcacccgcccccattcccatgggctttagtcaccattac 120


Query: 426 cctccaagtccccatgctgctggngaaattgatttaaatatttttccaaatggtgacgcc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cctccaagtccccatgctgctggngaaattgatttaaatatttttccaaatggtgacgcc 180


Query: 486 gccgccgttgttntaaatggagatccagaaggggattgcccaaaagatgttgaaaaagaa 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gccgccgttgttntaaatggagatccagaaggggattgcccaaaagatgttgaaaaagaa 240


Query: 546 catggtcatggtcatggtcatgggcatggtcataatagtagtaatagtagttgtaatggt 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 catggtcatggtcatggtcatgggcatggtcataatagtagtaatagtagttgtaatggt 300


Query: 606 catggacatggtttt 620
|||||||||||||||
Sbjct: 301 catggacatggtttt 315

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 378,764,065
Number of extensions: 26080262
Number of successful extensions: 2204482
Number of sequences better than 10.0: 966
Length of query: 694
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 670
Effective length of database: 97,308,875,965
Effective search space: 65196946896550
Effective search space used: 65196946896550
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 6.24
Homology vs Protein
Query= Contig-U07986-1 (Contig-U07986-1Q) /CSM_Contig/Contig-U07986-1Q.Seq.d
(694 letters)

Database: nrp_A
3,204,285 sequences; 1,040,966,779 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

CR954211_307(CR954211|pid:none) Ostreococcus tauri strain OTTH05... 34 4.8
BX572606_34(BX572606|pid:none) Rhodopseudomonas palustris CGA009... 33 8.2

>CR954211_307(CR954211|pid:none) Ostreococcus tauri strain OTTH0595,
*** SEQUENCING IN PROGRESS ***.
Length = 568

Score = 33.9 bits (76), Expect = 4.8
Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Frame = +3

Query: 306 FAHPIPILPMFALICVAKIFVSGGLDGAPAPIPMGFSHHYPPSPHAAGEIDLNIFPNGDA 485
FAHP+ L FA + S G+ PA +PMGFS PP A A
Sbjct: 369 FAHPLGPLTAFAAL-------SRGVRSRPARVPMGFSRARPPPDIA--------HARSPA 413

Query: 486 AAVVXNGDP--EGD 521
AV DP EGD
Sbjct: 414 DAVASTSDPSYEGD 427

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3204285
Number of Hits to DB: 606,665,648
Number of extensions: 12398591
Number of successful extensions: 35529
Number of sequences better than 10.0: 2
Number of HSP's gapped: 35511
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 1,040,966,779
Length adjustment: 124
Effective length of query: 107
Effective length of database: 643,635,439
Effective search space: 68868991973
Effective search space used: 68868991973
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.97 gvh: 0.52 alm: 0.23 top: 0.30 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 1.81 erl: 0.00 erm: 0.80 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: cytoplasmic
24.0 %: nuclear
20.0 %: mitochondrial
8.0 %: cytoskeletal
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: vacuolar

>> prediction for Contig-U07986-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0