Contig-U01505-1
Contig ID Contig-U01505-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01505-1 (Contig-U01505-1Q) /CSM_Contig/Contig-U01505-1Q.Seq.d
GGCAGTGACCCCCCTATTGATAACCCCCTTCGGAAGTGCCCATAATAGTG
ATAATGACAATGATGGTAGTGAAAATGCAGAGGAAGAAGAAGAAGGAGAT
GACGACGTAAACAGAAGCCAAGCCAGCCCTAAAATGAACAGAGAAATAAG
AGCACATACCAAGAACATGATTAAAAAGATTAAAGAATTAAAAGCACACG
ATGATACTTTTAATGAAGCANTCANANTNATAGATATCAATAAATGGTTA
CAAACAAAGGGCTCTGATATCATCTCAAGCGATGGATCTTTAGAGTTTGA
TATAAAAGAGTGCATGCATTCATTGGAAGATAAGATTAATGAATTAAATA
ATTTAATGGAAATTTCTTCACTTTGCAAAAACAATAATGACACTGGAAAT
AATAATAATAATAATAATAATAATAATAATAATAAATCAAAATTATCTTT
TTCTTCAAATATTATCAATAATGACGAAGATGATGTTAGATAAAATAAAA
AAGATATAAAAAAAGAANAAAATTATTAAAAAAAAAAAAAA

Gap no gap
Contig length 541
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3157359
End point 3156813
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U01505
List of clone(s)

est1=SSA254Z,1,542
Translated Amino Acid sequence
AVTPLLITPFGSAHNSDNDNDGSENAEEEEEGDDDVNRSQASPKMNREIRAHTKNMIKKI
KELKAHDDTFNEAXXXIDINKWLQTKGSDIISSDGSLEFDIKECMHSLEDKINELNNLME
ISSLCKNNNDTGNNNNNNNNNNNNKSKLSFSSNIINNDEDDVR*nkkdikkexny*kkkk


Translated Amino Acid sequence (All Frames)
Frame A:
gsdppidnplrkcp*****q*w**kcrgrrrrr*rrkqkpsqp*neqrnkstyqehd*kd
*rikstr*yf**sxxxxryq*mvtnkgl*yhlkrwifrv*ykrvhafigr*d**ik*fng
nfftlqkq**hwk************ikiifffkyyq**rr*c*ik*krykkrxkllkkkk


Frame B:
AVTPLLITPFGSAHNSDNDNDGSENAEEEEEGDDDVNRSQASPKMNREIRAHTKNMIKKI
KELKAHDDTFNEAXXXIDINKWLQTKGSDIISSDGSLEFDIKECMHSLEDKINELNNLME
ISSLCKNNNDTGNNNNNNNNNNNNKSKLSFSSNIINNDEDDVR*nkkdikkexny*kkkk


Frame C:
q*ppy**ppsevpiivimtmmvvkmqrkkkkemtt*teakpalk*tek*ehiprt*lkrl
kn*khtmillmkxsxx*isingykqralissqamdl*sli*ksacihwkirlmn*ii*wk
flhfaktimtleiiiiiiiiiiiinqnylflqilsimtkmmldkikki*kkxkiikkkk


own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01505-1 (Contig-U01505-1Q)
/CSM_Contig/Contig-U01505-1Q.Seq.d
(541 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01505-1 (Contig-U01505-1Q) /CSM_Contig/Conti... 763 0.0
Contig-U08559-1 (Contig-U08559-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U00757-1 (Contig-U00757-1Q) /CSM_Contig/Conti... 40 0.003
Contig-U11796-1 (Contig-U11796-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U11790-1 (Contig-U11790-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U11524-1 (Contig-U11524-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U10867-1 (Contig-U10867-1Q) /CSM_Contig/Conti... 38 0.013
Contig-U12565-1 (Contig-U12565-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U10713-1 (Contig-U10713-1Q) /CSM_Contig/Conti... 36 0.053
Contig-U14232-1 (Contig-U14232-1Q) /CSM_Contig/Conti... 34 0.21

>Contig-U01505-1 (Contig-U01505-1Q) /CSM_Contig/Contig-U01505-1Q.Seq.d
Length = 541

Score = 763 bits (385), Expect = 0.0
Identities = 397/397 (100%)
Strand = Plus / Plus


Query: 1 ggcagtgacccccctattgataacccccttcggaagtgcccataatagtgataatgacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcagtgacccccctattgataacccccttcggaagtgcccataatagtgataatgacaa 60


Query: 61 tgatggtagtgaaaatgcagaggaagaagaagaaggagatgacgacgtaaacagaagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgatggtagtgaaaatgcagaggaagaagaagaaggagatgacgacgtaaacagaagcca 120


Query: 121 agccagccctaaaatgaacagagaaataagagcacataccaagaacatgattaaaaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agccagccctaaaatgaacagagaaataagagcacataccaagaacatgattaaaaagat 180


Query: 181 taaagaattaaaagcacacgatgatacttttaatgaagcantcanantnatagatatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taaagaattaaaagcacacgatgatacttttaatgaagcantcanantnatagatatcaa 240


Query: 241 taaatggttacaaacaaagggctctgatatcatctcaagcgatggatctttagagtttga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaatggttacaaacaaagggctctgatatcatctcaagcgatggatctttagagtttga 300


Query: 301 tataaaagagtgcatgcattcattggaagataagattaatgaattaaataatttaatgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tataaaagagtgcatgcattcattggaagataagattaatgaattaaataatttaatgga 360


Query: 361 aatttcttcactttgcaaaaacaataatgacactgga 397
|||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatttcttcactttgcaaaaacaataatgacactgga 397


Score = 107 bits (54), Expect = 2e-23
Identities = 54/54 (100%)
Strand = Plus / Plus


Query: 436 atcaaaattatctttttcttcaaatattatcaataatgacgaagatgatgttag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atcaaaattatctttttcttcaaatattatcaataatgacgaagatgatgttag 489


>Contig-U08559-1 (Contig-U08559-1Q) /CSM_Contig/Contig-U08559-1Q.Seq.d
Length = 628

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 338 aatgaattaaataatttaat 357
||||||||||||||||||||
Sbjct: 375 aatgaattaaataatttaat 394


>Contig-U00757-1 (Contig-U00757-1Q) /CSM_Contig/Contig-U00757-1Q.Seq.d
Length = 1775

Score = 40.1 bits (20), Expect = 0.003
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 83 gaagaagaagaaggagatga 102
||||||||||||||||||||
Sbjct: 872 gaagaagaagaaggagatga 891


Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus


Query: 86 gaagaagaaggagatga 102
|||||||||||||||||
Sbjct: 920 gaagaagaaggagatga 936


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9978
Number of Sequences: 8361
Number of extensions: 9978
Number of successful extensions: 1683
Number of sequences better than 10.0: 224
length of query: 541
length of database: 7,895,291
effective HSP length: 16
effective length of query: 525
effective length of database: 7,761,515
effective search space: 4074795375
effective search space used: 4074795375
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 4.29
Homology vs DNA
Query= Contig-U01505-1 (Contig-U01505-1Q) /CSM_Contig/Contig-U01505-1Q.Seq.d
(541 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C25604) Dictyostelium discoideum slug cDNA, clone SSA254. 763 0.0 2
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 436 e-171 3
(EK545614) 1095516081310 Global-Ocean-Sampling_GS-32-01-01-1... 54 0.006 1
(DR996801) Mdas9009P23.g1 Apple_EST_Mdas Malus x domestica c... 52 0.022 1
(CN919703) 030213ABQA001545HT (ABQA) Royal Gala flower Malus... 52 0.022 1
(EX890991) RS1BK56JQ RS1(AR) Raphanus sativus var. oleiformi... 52 0.022 1
(EX266830) 1447475_5_K17_069 PY06 Carica papaya cDNA, mRNA s... 52 0.022 1
(EX256631) 1436548_5_D10_045 PY06 Carica papaya cDNA, mRNA s... 52 0.022 1
(EX255669) 1435725_5_B03_016 PY06 Carica papaya cDNA, mRNA s... 52 0.022 1
(AC179754) Strongylocentrotus purpuratus clone R3-1018B20, W... 48 0.029 2
(AC141726) Apis mellifera clone CH224-57G2, WORKING DRAFT SE... 42 0.034 2
(CT009523) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 0.063 5
(AC026138) Homo sapiens chromosome 1 clone RP11-269I13 map 1... 42 0.082 5
(AY810909) Schistosoma japonicum SJCHGC05299 protein mRNA, p... 38 0.088 3
(AC168326) Strongylocentrotus purpuratus clone R3-64I12, WOR... 50 0.088 1
(DH440556) Macropus eugenii DNA with T3 primer, fosmid clone... 50 0.088 1
(CT971731) Equus caballus GSS, BAC clone CH241-53I19, SP6 en... 50 0.088 1
(EH691194) CCIM3374.b1_L04.ab1 CCI(LMS) chicory Cichorium in... 50 0.088 1
(EB151355) 030203ABPB003742HT (ABPB) M9 root tips Malus x do... 50 0.088 1
(EB151345) 030203ABPB003781HT (ABPB) M9 root tips Malus x do... 50 0.088 1
(EB134325) 010617AAWA008587HT (AAWA) Royal Gala 59 DAFB seed... 50 0.088 1
(EB125276) 010305AASA001400HT (AASA) Royal Gala 10 DAFB frui... 50 0.088 1
(CO867792) Mdfrt3037a02.y4 Mdfrt Malus x domestica cDNA clon... 50 0.088 1
(AC106452) Rattus norvegicus clone CH230-200L23, *** SEQUENC... 46 0.095 4
(AL139136) Human DNA sequence from clone RP11-53I24 on chrom... 42 0.10 3
(CU571335) Zebrafish DNA sequence from clone DKEY-204E18 in ... 48 0.26 2
(FI130107) SGM120 Sugarcane cv. Co7201 microsatellite enrich... 36 0.26 2
(U00691) Dictyostelium discoideum plasmid Ddp1 D2 orf, D1/D3... 32 0.28 4
(U00796) Dictyostelium discoideum plasmid Ddp1 D2 ORF, D1 OR... 32 0.28 4
(AC142261) Mus musculus BAC clone RP24-469C3 from chromosome... 40 0.29 5
(BX072578) Zebrafish DNA sequence from clone CH211-286A10 in... 48 0.35 1
(BC165861) Danio rerio zgc:101592, mRNA (cDNA clone MGC:1929... 48 0.35 1
(BC085378) Danio rerio zgc:101592, mRNA (cDNA clone MGC:1015... 48 0.35 1
(AC154224) Mus musculus BAC clone RP24-141J15 from chromosom... 48 0.35 1
(AC105161) Mus musculus chromosome 1, clone RP24-73O16, comp... 48 0.35 1
(CP000500) Pichia stipitis CBS 6054 chromosome 6, complete s... 48 0.35 1
(AC117019) Rattus norvegicus clone CH230-14E5, WORKING DRAFT... 48 0.35 1
(CT027618) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 48 0.35 1
(BX942829) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 48 0.35 1
(AK164652) Mus musculus 13 days embryo stomach cDNA, RIKEN f... 48 0.35 1
(AK085222) Mus musculus 13 days embryo stomach cDNA, RIKEN f... 48 0.35 1
(AZ795303) 2M0049P20F Mouse 10kb plasmid UUGC1M library Mus ... 48 0.35 1
(AQ923387) RPCI-23-275C18.TJ RPCI-23 Mus musculus genomic cl... 48 0.35 1
(AQ920482) RPCI-23-275K18.TJ RPCI-23 Mus musculus genomic cl... 48 0.35 1
(FI082022) CHO_OF7399xp09f1.ab1 CHO_OF7 Nicotiana tabacum ge... 48 0.35 1
(ED089660) AUAC-aaa32d10.b1 Ascaris suum whole genome shotgu... 48 0.35 1
(CL296359) ZMMBBb0028P17f ZMMBBb (HindIII) Zea mays subsp. m... 48 0.35 1
(EB843134) 5821280 KZ58 Danio rerio cDNA clone 2315539, mRNA... 48 0.35 1
(DY030580) 23FGYLD_UP_003_D09_01FEB2004_073 Brassica napus 2... 48 0.35 1
(CN116887) EC2CAA45CA03.g1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN116070) EC2CAA43DD06.b1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN113826) EC2CAA40AD03.g1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN113825) EC2CAA40AD03.b1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN113786) EC2CAA40AB01.g1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN113785) EC2CAA40AB01.b1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN113202) EC2CAA39DG03.g1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN113201) EC2CAA39DG03.b1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN112528) EC2CAA38DC07.g1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN112527) EC2CAA38DC07.b1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN106857) EC2CAA2BA05.g1 Xenopus tropicalis xthr plasmid li... 48 0.35 1
(CN106856) EC2CAA2BA05.b1 Xenopus tropicalis xthr plasmid li... 48 0.35 1
(CN101360) EC2CAA19AG02.g1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN101359) EC2CAA19AG02.b1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN100774) EC2CAA18BB06.g1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN100773) EC2CAA18BB06.b1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CN096824) EC2CAA12AD02.g1 Xenopus tropicalis xthr plasmid l... 48 0.35 1
(CF171409) B0842A11-5 NIA Mouse Newborn Kidney cDNA Library ... 48 0.35 1
(BP189528) Dugesia japonica cDNA, clone: 06582_HH, expressed... 48 0.35 1
(EC253296) 485311 CK02 Drosophila melanogaster cDNA clone 21... 40 0.43 2
(AC128206) Rattus norvegicus clone CH230-482G22, WORKING DRA... 42 0.43 5
(CO339925) EP09649.3prime Exelixis FlyTag CK02 pCDNA-SK+ Dro... 40 0.45 2
(U12980) Saccharomyces cerevisiae chromosome I left arm sequ... 34 0.50 5
(AL161502) Arabidopsis thaliana DNA chromosome 4, contig fra... 44 0.52 2
(AM477924) Vitis vinifera, whole genome shotgun sequence, co... 46 0.54 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 36 0.57 8
(AA550307) 1436m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falc... 42 0.61 2
(AC230069) Bos taurus clone CH240-526E24, WORKING DRAFT SEQU... 40 0.65 5
(EK015132) 1092955227010 Global-Ocean-Sampling_GS-31-01-01-1... 42 0.69 2
(AC094627) Rattus norvegicus clone CH230-5D7, WORKING DRAFT ... 32 0.73 2
(AC131808) Rattus norvegicus clone CH230-137I12, *** SEQUENC... 32 0.74 2
(AR516144) Sequence 21104 from patent US 6703491. 40 0.78 2
(AR500862) Sequence 5822 from patent US 6703491. 40 0.78 2
(AM469604) Vitis vinifera contig VV78X203522.2, whole genome... 34 0.80 3
(AL954214) Pan troglodytes chromosome 22 clone PTB-026G12 ma... 40 0.89 3
(AL954215) Pan troglodytes chromosome 22 clone RP43-034B14 m... 40 0.93 3
(DJ025869) Genome-wide DNA marker of Saccharomyces cerevisiae. 34 1.1 6
(AC178097) Strongylocentrotus purpuratus clone R3-1117D16, W... 38 1.1 2
(DY680174) TTDA587TO Tetrahymena thermophila EST library str... 38 1.2 2
(AC207123) Zea mays chromosome 2 clone CH201-178O21; ZMMBBc0... 38 1.3 4
(CR626866) Zebrafish DNA sequence from clone DKEY-147F20 in ... 46 1.4 1
(BX119965) Zebrafish DNA sequence from clone RP71-86I6 in li... 46 1.4 1
(EU961066) Zea mays clone 232574 integral membrane protein D... 46 1.4 1
(BT063827) Zea mays full-length cDNA clone ZM_BFc0110I02 mRN... 46 1.4 1
(BT034409) Zea mays full-length cDNA clone ZM_BFc0170B02 mRN... 46 1.4 1
(AM467222) Vitis vinifera contig VV78X037042.5, whole genome... 46 1.4 1
(AC157758) Medicago truncatula clone mth2-62b13, complete se... 46 1.4 1
(AC152752) Medicago truncatula clone mth2-89c9, complete seq... 46 1.4 1
(AC136472) Medicago truncatula clone mth2-24f21, complete se... 46 1.4 1
(AC002332) Arabidopsis thaliana chromosome 2 clone F4P9 map ... 46 1.4 1
(AC141662) Apis mellifera clone CH224-54J17, WORKING DRAFT S... 46 1.4 1
(AC106389) Rattus norvegicus clone CH230-140G24, WORKING DRA... 46 1.4 1
(FP074862) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 1.4 1
(EU642505) Brassica oleracea var. alboglabra clone BoB029L16... 46 1.4 1
(AC231222) Monodelphis domestica clone VMRC18-665C2, WORKING... 46 1.4 1
(AC226289) Tachyglossus aculeatus clone TA_Ba-429K21, WORKIN... 46 1.4 1
(AC202519) Medicago truncatula clone mth2-75c11, WORKING DRA... 46 1.4 1
(AC199486) Zea mays chromosome 7 clone CH201-293G7; ZMMBBc02... 46 1.4 1
(AC195155) Zea mays chromosome 7 clone ZMMBBb-349M8; ZMMBBb0... 46 1.4 1
(AC179590) Strongylocentrotus purpuratus clone R3-1029I2, WO... 46 1.4 1
(AC178964) Strongylocentrotus purpuratus clone R3-3121O21, W... 46 1.4 1
(AC177723) Strongylocentrotus purpuratus clone R3-1009B20, W... 46 1.4 1
(AC177124) Strongylocentrotus purpuratus clone R3-4014F5, WO... 46 1.4 1
(AC176510) Strongylocentrotus purpuratus clone R3-3072O6, WO... 46 1.4 1
(AY108260) Zea mays PCO082493 mRNA sequence. 46 1.4 1
(BH445838) BOGVG02TR BOGV Brassica oleracea genomic clone BO... 46 1.4 1
(BH363781) CH230-190G5.TJ CHORI-230 Segment 1 Rattus norvegi... 46 1.4 1
(BH012983) TDGAQ89TH cTOG Solanum lycopersicum genomic clone... 46 1.4 1
(FH646629) CHO_OF4987xg06r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 1.4 1
(ET676553) CHO_OF408xm08r1.ab1 CHO_OF Nicotiana tabacum geno... 46 1.4 1
(ER565866) 1093015768919 Global-Ocean-Sampling_GS-36-01-01-2... 46 1.4 1
(EK085528) 1092961144396 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.4 1
(CL874345) abe94b08.y1 Soybean methylation filtered genomic ... 46 1.4 1
(CG448934) OGTAU39TV ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 1.4 1
(CC703883) OGVAK74TH ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 1.4 1
(BZ718996) PUDBF60TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 1.4 1
(BZ707926) OGEBA48TM ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 1.4 1
(BZ707918) OGEBA48TC ZM_0.7_1.5_KB Zea mays genomic clone ZM... 46 1.4 1
(BZ546777) OGAHG10TC ZM2_0.7_1.5_KB Zea mays genomic clone Z... 46 1.4 1
(BH850378) SALK_071199.55.50.x Arabidopsis thaliana TDNA ins... 46 1.4 1
(BH749504) SALK_047951.56.00.x Arabidopsis thaliana TDNA ins... 46 1.4 1
(EH720266) CNML6702.b1_L19.ab1 CNM(LMS) spotted knapweed Cen... 46 1.4 1
(EH717897) CNML4496.b1_O20.ab1 CNM(LMS) spotted knapweed Cen... 46 1.4 1
(EE291110) ZM_BFc0180G14.r ZM_BFc Zea mays cDNA clone ZM_BFc... 46 1.4 1
(EE288088) ZM_BFc0175M14.r ZM_BFc Zea mays cDNA clone ZM_BFc... 46 1.4 1
(EE185246) ZM_BFc0170B02.r ZM_BFc Zea mays cDNA clone ZM_BFc... 46 1.4 1
(EE042839) ZM_BFc0110I02.r ZM_BFc Zea mays cDNA clone ZM_BFc... 46 1.4 1
(EE020136) ZM_BFc0073B16.r ZM_BFc Zea mays cDNA clone ZM_BFc... 46 1.4 1
(EE018826) ZM_BFc0071B01.r ZM_BFc Zea mays cDNA clone ZM_BFc... 46 1.4 1
(EB815140) ZM_BFb0369L08.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(EB707390) ZM_BFb0360F07.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(EB704924) ZM_BFb0350J15.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(EB702076) ZM_BFb0344J16.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(EB408587) ZM_BFb0321I13.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(EB403607) ZM_BFb0312D13.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(EB328568) CNSN01-F-108230-501 Normalized CNS library (juven... 46 1.4 1
(EB166807) ZM_BFb0377D17.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(EB165762) ZM_BFb0341L24.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(EB161377) ZM_BFb0300I05.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DY954368) CHPZ1878.b1_L14.ab1 CHP(XYZ) plains sunflower Hel... 46 1.4 1
(DY686305) ZM_BFb0274J15.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DY011541) BNSCSICT_UP_026_E04_14DEC2004_024 Brassica napus ... 46 1.4 1
(DW019330) EST1228291 MTY Medicago truncatula cDNA clone MTY... 46 1.4 1
(DV533946) ZM_BFb0225E17.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DV513730) ZM_BFb0195B09.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DV506557) ZM_BFb0184F14.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DV174695) ZM_BFb0178K16.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DV165892) ZM_BFb0163B15.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DV022937) ZM_BFb0142F13.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DT648467) ZM_BFb0109P18.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DT642400) ZM_BFb0100O05.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DR969912) ZM_BFb0091N16.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DR965279) ZM_BFb0085C08.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DR955473) ZM_BFb0049J21.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DR818580) ZM_BFb0053K21.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DR790089) ZM_BFb0008O14.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(DR789515) ZM_BFb0008B15.r ZM_BFb Zea mays cDNA 5', mRNA seq... 46 1.4 1
(AM869477) Crassostrea gigas EST, 5' end sequence, clone cdn... 46 1.4 1
(AM719267) Cucumis melo subsp. melo EST, clone PS_29-G06-M13R. 46 1.4 1
(CR931318) Danio rerio EST sequence, clone 261-D03-2. 46 1.4 1
(CN737396) 26RDBNT_UP_026_E04_22JAN2004_024 Brassica napus 2... 46 1.4 1
(AI960994) sc93g02.y1 Gm-c1019 Glycine max cDNA clone GENOME... 46 1.4 1
(CF649315) 3530_1_68_1_F04.x_1 3530 - Full length cDNA libra... 46 1.4 1
(CF646648) 3530_1_31_1_C12.x_1 3530 - Full length cDNA libra... 46 1.4 1
(CF630409) zmrws48_0A20-012-e10.s3 zmrws48 Zea mays cDNA 3',... 46 1.4 1
(CD413805) Gm_ck45446 Soybean induced by Salicylic Acid Glyc... 46 1.4 1
(CB063750) sav63f10.y1 Gm-c1069 Glycine max cDNA clone SOYBE... 46 1.4 1
(CA934952) sau61e05.y1 Gm-c1071 Glycine max cDNA clone SOYBE... 46 1.4 1
(CA799590) sat60a06.y1 Gm-c1056 Glycine soja cDNA clone SOYB... 46 1.4 1
(BU082903) saq40c01.y1 Gm-c1045 Glycine max cDNA clone SOYBE... 46 1.4 1
(BQ742843) saq56g01.y1 Gm-c1076 Glycine max cDNA clone SOYBE... 46 1.4 1
(BP808035) Arabidopsis thaliana cDNA clone:RAFL24-16-D04, 5'... 46 1.4 1
(BP583261) Arabidopsis thaliana cDNA clone:RAFL14-40-F21, 3'... 46 1.4 1
(BP575577) Arabidopsis thaliana cDNA clone:RAFL14-13-B02, 3'... 46 1.4 1
(BP571626) Arabidopsis thaliana cDNA clone:RAFL14-76-P13, 3'... 46 1.4 1
(BM884943) sal93a06.y1 Gm-c1063 Glycine max cDNA clone SOYBE... 46 1.4 1
(BI786947) sai55c10.y1 Gm-c1068 Glycine max cDNA clone GENOM... 46 1.4 1
(BI785006) saf96g02.y3 Gm-c1079 Glycine max cDNA clone GENOM... 46 1.4 1
(BI699967) sag50b09.y1 Gm-c1081 Glycine max cDNA clone GENOM... 46 1.4 1
(BI699851) sag48h03.y1 Gm-c1081 Glycine max cDNA clone GENOM... 46 1.4 1
(BI425387) saf28g11.y3 Gm-c1076 Glycine max cDNA clone GENOM... 46 1.4 1
(BI317082) saf84e09.y1 Gm-c1079 Glycine max cDNA clone GENOM... 46 1.4 1
(BI309486) EST530896 GPOD Medicago truncatula cDNA clone pGP... 46 1.4 1
(BG155431) sab44a11.y1 Gm-c1026 Glycine max cDNA clone GENOM... 46 1.4 1
(BG043459) su39a08.y1 Gm-c1068 Glycine max cDNA clone GENOME... 46 1.4 1
(BG041778) saa41a04.y1 Gm-c1059 Glycine soja cDNA clone GENO... 46 1.4 1
(BF645094) NF034E10EC1F1082 Elicited cell culture Medicago t... 46 1.4 1
(BF644741) NF014E01EC1F1005 Elicited cell culture Medicago t... 46 1.4 1
(BE556310) sq01a11.y1 Gm-c1045 Glycine max cDNA clone GENOME... 46 1.4 1
(BE475479) sp77h09.y1 Gm-c1044 Glycine max cDNA clone GENOME... 46 1.4 1
(BE331336) so98b02.y1 Gm-c1041 Glycine max cDNA clone GENOME... 46 1.4 1
(BE326147) NF085E12ST1F1088 Developing stem Medicago truncat... 46 1.4 1
(BB938571) Trifolium pratense cDNA clone:RCC11852. 46 1.4 1
(BB937987) Trifolium pratense cDNA clone:RCC11181. 46 1.4 1
(BB937431) Trifolium pratense cDNA clone:RCC10528. 46 1.4 1
(BB937295) Trifolium pratense cDNA clone:RCC10370. 46 1.4 1
(BB936888) Trifolium pratense cDNA clone:RCC09888. 46 1.4 1
(BB936381) Trifolium pratense cDNA clone:RCC09310. 46 1.4 1
(BB930474) Trifolium pratense cDNA clone:RCC02133. 46 1.4 1
(GH171199) Nas120_E03_2005-03-10_023.ab1 Nasturtium 22 days ... 46 1.4 1
(GH168540) Nas74_D07_2005-01-12_057.ab1 Nasturtium 22 days p... 46 1.4 1
(GE044046) 454GmaGlobSeed786694 Soybean Seeds Containing Glo... 46 1.4 1
(FL920276) CCGO12894.b1 CCGO Panicum virgatum root (H) Panic... 46 1.4 1
(FL858558) CCGI5406.b1 CCGI Panicum virgatum etiolated seedl... 46 1.4 1
(FL816136) CCGG14930.b1 CCGG Panicum virgatum late flowering... 46 1.4 1
(FL797172) CCGG1200.b1 CCGG Panicum virgatum late flowering ... 46 1.4 1
(FL774120) CCGF6887.b1 CCGF Panicum virgatum early floral bu... 46 1.4 1
(FL749890) CCGC3911.b1 CCGC Panicum virgatum early floral bu... 46 1.4 1
(FL723888) CCGB7190.b1 CCGB Panicum virgatum apex + stem (L)... 46 1.4 1
(FL704641) CCGA8949.b1 CCGA Panicum virgatum apex + stem (H)... 46 1.4 1
(FL699406) CCGA6289.b1 CCGA Panicum virgatum apex + stem (H)... 46 1.4 1
(FK956429) 1610931 CERES-213 Zea mays cDNA clone 346431 5', ... 46 1.4 1
(FK956428) 1096993 CERES-197 Zea mays cDNA clone 243596 5', ... 46 1.4 1
(FK956426) 1603723 CERES-213 Zea mays cDNA clone 343069 5', ... 46 1.4 1
(FK956425) 1524166 CERES-197 Zea mays cDNA clone 331342 5', ... 46 1.4 1
(FK956423) 1097343 CERES-197 Zea mays cDNA clone 243946 5', ... 46 1.4 1
(FK956422) 2230822 CERES-226 Zea mays cDNA clone 445430 5', ... 46 1.4 1
(FK956420) 1738534 CERES-226 Zea mays cDNA clone 390813 5', ... 46 1.4 1
(FK956419) 1738409 CERES-227 Zea mays cDNA clone 390688 5', ... 46 1.4 1
(FK956418) 2225439 CERES-226 Zea mays cDNA clone 440166 5', ... 46 1.4 1
(FK956417) 1515276 CERES-213 Zea mays cDNA clone 324091 5', ... 46 1.4 1
(FK956416) 1527718 CERES-197 Zea mays cDNA clone 334894 5', ... 46 1.4 1
(FK956415) 24456933 CERES-505 Zea mays cDNA clone 1613100 5'... 46 1.4 1
(FK956413) 13124156 CERES-CL12 Zea mays cDNA clone 1394550 5... 46 1.4 1
(FK956412) 1611007 CERES-213 Zea mays cDNA clone 346507 5', ... 46 1.4 1
(FK956411) 2948069 CERES-227 Zea mays cDNA clone 492875 5', ... 46 1.4 1
(FK956410) 2744347 CERES-226 Zea mays cDNA clone 451459 5', ... 46 1.4 1
(FK956409) 1735466 CERES-226 Zea mays cDNA clone 387745 5', ... 46 1.4 1
(FK956407) 1613847 CERES-213 Zea mays cDNA clone 349347 5', ... 46 1.4 1
(FK956405) 2767217 CERES-226 Zea mays cDNA clone 465724 5', ... 46 1.4 1
(FK956404) 1729533 CERES-226 Zea mays cDNA clone 381812 5', ... 46 1.4 1
(FK956403) 16639247 CERES-503 Zea mays cDNA clone 1561318 5'... 46 1.4 1
(FK956402) 1732441 CERES-226 Zea mays cDNA clone 384720 5', ... 46 1.4 1
(FK956401) 2959719 CERES-227 Zea mays cDNA clone 501544 5', ... 46 1.4 1
(FK956399) 1082214 CERES-199 Zea mays cDNA clone 232574 5', ... 46 1.4 1
(FK956398) 2945801 CERES-227 Zea mays cDNA clone 491095 5', ... 46 1.4 1
(FK956397) 2229367 CERES-226 Zea mays cDNA clone 444094 5', ... 46 1.4 1
(FK956396) 1733059 CERES-226 Zea mays cDNA clone 385338 5', ... 46 1.4 1
(FK956395) 2003833 CERES-226 Zea mays cDNA clone 407456 5', ... 46 1.4 1
(FK956394) 13130468 CERES-CL12 Zea mays cDNA clone 1400862 5... 46 1.4 1
(FK956393) 2741637 CERES-226 Zea mays cDNA clone 448749 5', ... 46 1.4 1
(FK956391) 2760753 CERES-227 Zea mays cDNA clone 460019 5', ... 46 1.4 1
(FK956390) 1413930 CERES-197 Zea mays cDNA clone 300036 5', ... 46 1.4 1
(FK956389) 1603020 CERES-213 Zea mays cDNA clone 342366 5', ... 46 1.4 1
(FK023964) GLRAF68TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 46 1.4 1
(FD946032) RS2G663TF RS2(RS) Raphanus sativus cDNA 5', mRNA ... 46 1.4 1
(AW782034) sl99f09.y1 Gm-c1027 Glycine max cDNA clone GENOME... 46 1.4 1
(AW736293) EST332377 KV3 Medicago truncatula cDNA clone pKV3... 46 1.4 1
(AW568847) si73a05.y1 Gm-c1031 Glycine max cDNA clone GENOME... 46 1.4 1
(AW317383) sg48g01.y1 Gm-c1025 Glycine max cDNA clone GENOME... 46 1.4 1
(AW278155) sf40d10.y1 Gm-c1009 Glycine max cDNA clone GENOME... 46 1.4 1
(AW186312) se66b10.y1 Gm-c1019 Glycine max cDNA clone GENOME... 46 1.4 1
(AC107171) Rattus norvegicus clone CH230-203L1, *** SEQUENCI... 36 1.4 6
(AC005913) Homo sapiens Xp22-175-176 BAC GSHB-484O17 (Genome... 42 1.4 2
(AC110329) Rattus norvegicus clone CH230-306O11, *** SEQUENC... 34 1.5 6
(AC184149) Mus musculus BAC clone RP24-143K6 from chromosome... 40 1.5 2
(CU302258) CH251-520O13, complete sequence. 42 1.5 3
(AC198194) Pan troglodytes BAC clone CH251-520O13 from chrom... 42 1.5 3
(AQ753744) HS_2137_B1_E11_MR CIT Approved Human Genomic Sper... 34 1.5 2
(AC163763) Pan troglodytes BAC clone CH251-180G5 from chromo... 42 1.5 2
(AC177894) Zea mays chromosome UNK clone CH201-201P24; ZMMBB... 38 1.6 4
(AC185989) Pan troglodytes BAC clone CH251-378D15 from chrom... 40 1.6 4
(AC020553) Homo sapiens BAC clone RP11-462D9 from 8, complet... 38 1.6 2
(AC166958) Bos taurus clone CH240-186N2, WORKING DRAFT SEQUE... 42 1.6 4
(AC184137) Zea mays chromosome 4 clone CH201-4I5; ZMMBBc0004... 38 1.7 5
(AL928594) Mouse DNA sequence from clone RP23-35H8 on chromo... 42 1.9 2
(EV837018) TT1DU60TV Tetrahymena thermophila SB210 cDNA libr... 38 2.0 2
(AC117403) Homo sapiens 12 BAC RP11-239E14 (Roswell Park Can... 42 2.2 3
(DY680173) TTDA587TG Tetrahymena thermophila EST library str... 38 2.2 2
(AL053359) Drosophila melanogaster genome survey sequence TE... 38 2.3 2
(AM641559) Entamoeba dispar GSS, clone dispar83g07.p1k. 34 2.3 2
(AC181260) Strongylocentrotus purpuratus clone R3-115K12, WO... 40 2.3 4
(ER331302) 1092344262741 Global-Ocean-Sampling_GS-34-01-01-1... 34 2.5 2
(DY680098) TTDA538TG Tetrahymena thermophila EST library str... 38 2.5 2
(AC177658) Strongylocentrotus purpuratus clone R3-1017P24, W... 40 2.5 3
(AC149941) Strongylocentrotus purpuratus clone R3-17I13, WOR... 32 2.6 2
(BH159664) ENTRV05TR Entamoeba histolytica Sheared DNA Entam... 34 2.6 2
(EV832698) FTSC954TF Tetrahymena thermophila SB210 cDNA libr... 38 2.7 2
(CT956009) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.7 2
(CU234127) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 2.7 2
(AL773553) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***... 38 2.7 3
(AC192642) Pan troglodytes BAC clone CH251-171A7 from chromo... 34 2.7 2
(AC007091) Homo sapiens BAC clone RP11-71F18 from 7, complet... 34 2.7 2
(AL066476) Drosophila melanogaster genome survey sequence T7... 38 2.7 2
(AM484004) Vitis vinifera contig VV78X217648.8, whole genome... 32 2.7 4
(AZ549256) ENTFJ20TF Entamoeba histolytica Sheared DNA Entam... 34 2.7 2
(AC149940) Strongylocentrotus purpuratus clone R3-15I1, WORK... 32 2.8 2
(AC011020) Arabidopsis thaliana chromosome 1 BAC F12B7 genom... 40 2.8 4
(AL067801) Drosophila melanogaster genome survey sequence TE... 38 2.8 2
(AC175089) Glycine tomentella clone gtt1-63m11, WORKING DRAF... 42 3.0 4
(AC176441) Strongylocentrotus purpuratus clone R3-3066P12, W... 42 3.0 4
(AC140296) Mus musculus BAC clone RP24-313K7 from Y, complet... 40 3.1 3
(AF486821) Entamoeba histolytica Rad51 (Rad51) gene, complet... 34 3.2 2
(AC004393) Arabidopsis thaliana chromosome 1 BAC T1F15 seque... 40 3.3 4
(AC192186) Pan troglodytes BAC clone CH251-278I24 from chrom... 40 3.3 3
(AC147499) Medicago truncatula chromosome 6 clone mth2-22h5,... 36 3.3 6
(AM456103) Vitis vinifera contig VV78X003633.7, whole genome... 40 3.5 3
(AC186616) Zea mays chromosome 3 clone CH201-270M9; ZMMBBc02... 38 3.6 3
(FG991022) GLLDB71TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 32 3.6 2
(AG539735) Mus musculus molossinus DNA, clone:MSMg01-452H23.... 34 3.6 2
(DU486420) 1098421105634 CHORI-243 Ovis aries genomic clone ... 34 3.6 2
(AG423715) Mus musculus molossinus DNA, clone:MSMg01-295P15.... 34 3.6 2
(AC117032) Rattus norvegicus clone CH230-207K17, *** SEQUENC... 42 3.6 3
(BJ439587) Dictyostelium discoideum cDNA clone:ddv40n24, 3' ... 32 3.7 2
(BM188308) saj99c01.y1 Gm-c1074 Glycine max cDNA clone SOYBE... 32 3.7 2
(AI441544) sa67c02.y1 Gm-c1004 Glycine max cDNA clone GENOME... 32 3.7 2
(DV211690) 0089P0160Z_H09_T7 Mimulus guttatus library 2 Mimu... 34 3.7 2
(AB005236) Arabidopsis thaliana genomic DNA, chromosome 5, P... 40 3.8 3
(AC176024) Strongylocentrotus purpuratus clone R3-3024L3, WO... 42 3.9 4
(AC146633) Mus musculus BAC clone RP24-483C21 from chromosom... 40 3.9 3
(AL929433) Mouse DNA sequence from clone RP23-193M23 on chro... 36 3.9 5
(AC200445) Mus musculus BAC clone CH36-354M16 from chromosom... 40 4.2 3
(AC214795) Zea mays chromosome 9 clone CH201-68J24; ZMMBBc00... 42 4.3 3
(AC178025) Strongylocentrotus purpuratus clone R3-3055H16, W... 36 4.3 5
(AC090919) Homo sapiens chromosome 8, clone RP11-42C24, comp... 38 4.4 3
(AC131462) Rattus norvegicus clone CH230-414F18, *** SEQUENC... 40 4.4 3
(AC192055) Mus musculus BAC clone CH36-323P12 from chromosom... 40 4.4 3
(AC157803) Mus musculus chromosome 1, clone RP24-302H15, com... 42 4.9 2
(AC168400) Strongylocentrotus purpuratus clone R3-4002J19, W... 42 5.3 2
(AC157963) Strongylocentrotus purpuratus clone R3-4002J19, W... 42 5.3 2
(AL158087) Human DNA sequence from clone RP5-952N6 on chromo... 42 5.4 2
(BV881627) pRRL2:Newb:20080411:260720 USMARC Pig Breed SNP D... 44 5.4 1
(AB145856) Homo sapiens DNA, STS on chromosome 15, D15S0268i... 44 5.4 1
(AL671896) Mouse DNA sequence from clone RP23-354F16 on chro... 44 5.4 1
(AC209782) MACACA MULATTA BAC clone CH250-395H10 from chromo... 44 5.4 1
(EU024830) Fragaria vesca subsp. americana clone fosmid 13I0... 44 5.4 1
(CU062477) M.truncatula DNA sequence from clone MTH2-172L14 ... 44 5.4 1
(AP010557) Lotus japonicus genomic DNA, chromosome 4, clone:... 44 5.4 1
(AF126550) Glycine max mannosyl-oligosaccharide 1,2-alpha-ma... 44 5.4 1
(AC174344) Medicago truncatula clone mth2-167b8, complete se... 44 5.4 1
(AC160836) Medicago truncatula clone mth2-115l23, complete s... 44 5.4 1
(AC124952) Medicago truncatula clone mth2-24m24, complete se... 44 5.4 1
(AC121245) Medicago truncatula clone mth2-33g3, complete seq... 44 5.4 1
(AC012477) Genomic Sequence For Arabidopsis thaliana Clone C... 44 5.4 1
(AC012392) Genomic Sequence For Arabidopsis thaliana clone C... 44 5.4 1
(DJ468929) Method for analysing genome using microsatellite ... 44 5.4 1
(DD000855) PLANT ARTIFICIAL CHROMOSOME COMPOSITIONS AND METH... 44 5.4 1
(AX059540) Sequence 273 from Patent WO0055325. 44 5.4 1
(AR777056) Sequence 211 from patent US 6972197. 44 5.4 1
(EU016193) Trigoniophthalmus alternatus mitochondrion, compl... 44 5.4 1
(AC103691) Homo sapiens chromosome 15, clone RP11-959H21, co... 44 5.4 1
(AC100828) Homo sapiens chromosome 15, clone RP11-184D12, co... 44 5.4 1
(AC090815) Homo sapiens chromosome 15, clone RP11-1078O1, co... 44 5.4 1
(AC068867) Homo sapiens chromosome 15, clone RP11-702M1, com... 44 5.4 1
(AC008716) Homo sapiens chromosome 5 clone CTB-85P21, comple... 44 5.4 1
(AC008423) Homo sapiens chromosome 5 clone CTC-298N6, comple... 44 5.4 1
(AC158818) Bos taurus clone CH240-62J5, WORKING DRAFT SEQUEN... 44 5.4 1
(AC109387) Rattus norvegicus clone CH230-85G15, *** SEQUENCI... 44 5.4 1
(AC096294) Rattus norvegicus clone CH230-37H23, *** SEQUENCI... 44 5.4 1
(CU856418) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.4 1
(CU468856) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 5.4 1
(AC211064) Solanum lycopersicum chromosome 6 clone C06HBa022... 44 5.4 1
(AC211056) Solanum lycopersicum chromosome 6 clone C06HBa015... 44 5.4 1
(AC201253) Strongylocentrotus purpuratus clone R3-15N4, WORK... 44 5.4 1
(AC181027) Strongylocentrotus purpuratus clone R3-3050N19, W... 44 5.4 1
(AC180286) Strongylocentrotus purpuratus clone R3-3121K19, W... 44 5.4 1
(AC178416) Strongylocentrotus purpuratus clone R3-1112I12, W... 44 5.4 1
(AC177539) Bos taurus clone CH240-138A6, *** SEQUENCING IN P... 44 5.4 1
(AC169598) Bos taurus clone CH240-173B8, WORKING DRAFT SEQUE... 44 5.4 1
(AC168842) Strongylocentrotus purpuratus clone R3-13B19, WOR... 44 5.4 1
(AC019335) Homo sapiens chromosome 5 clone RP11-427K3, WORKI... 44 5.4 1
(FI292793) AdH1003-CPY2-N13TF AdH1 Arachis duranensis genomi... 44 5.4 1
(FI292285) AdH1150-CPY2-E23TF AdH1 Arachis duranensis genomi... 44 5.4 1
(FI022669) CHO_OF6931xc03r1.ab1 CHO_OF6 Nicotiana tabacum ge... 44 5.4 1
(FH673505) CHO_OF5042xm09f1.ab1 CHO_OF5 Nicotiana tabacum ge... 44 5.4 1
(FH595347) CHO_OF4916xa19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 5.4 1
(FH245707) CHO_OF3007xi01f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 5.4 1
(FH189596) CHO_OF3443xc09r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 5.4 1
(FH187914) CHO_OF3437xc01f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 5.4 1
(FH099056) CHO_OF3033xh20f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 5.4 1
(ET883583) CHO_OF073xh20f1.ab1 CHO_OF Nicotiana tabacum geno... 44 5.4 1
(ER488422) 1093015313152 Global-Ocean-Sampling_GS-35-01-01-1... 44 5.4 1
(EJ895730) 1093018466075 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.4 1
(EJ887050) 1093018423355 Global-Ocean-Sampling_GS-30-02-01-1... 44 5.4 1
(AQ330867) nbxb0048G02r CUGI Rice BAC Library Oryza sativa J... 44 5.4 1
(EI269405) OR__Ba0078I16.f OR__Ba Oryza rufipogon genomic cl... 44 5.4 1
(ED533107) KBrB124N23R KBrB, Brassica rapa BamHI BAC library... 44 5.4 1
(CW929351) EDCBW37TF A. castellanii, 6-8 kb library from tot... 44 5.4 1
(CW923397) EDCAY46TF A. castellanii, 6-8 kb library from tot... 44 5.4 1
(AG729416) Macaca fuscata fuscata DNA, clone: MSB2-184G15_F,... 44 5.4 1
(BH760810) BMBAC317B08T7_PSU Brugia malayi Genomic Bac Libra... 44 5.4 1
(BH739072) BOMHT72TR BO_2_3_KB Brassica oleracea genomic clo... 44 5.4 1
(EL457528) CHTS10995.b1_E14.ab1 CHT(LMS) Jerusalem artichoke... 44 5.4 1
(EG029341) AH1748 Shanyou 523 Peanut Cotyledon cDNA Library ... 44 5.4 1
(EE525176) 37RDBRH_UP_038_G05_08JUL2004_035 Brassica rapa 37... 44 5.4 1
(EE467879) BNSCS4CT_UP_002_D01_15JAN2005_009 Brassica napus ... 44 5.4 1
(EE447697) 74ETGS48_UP_018_A09_28APR2005_079 74ETGS48 Brassi... 44 5.4 1
(DT315408) JGI_CAAX4893.fwd CAAX Pimephales promelas testis ... 44 5.4 1
(DT182599) JGI_ANNO49123.fwd ANNO Pimephales promelas Whole ... 44 5.4 1
(DC593760) Lotus japonicus mRNA, clone: GENr011c10, 5' end s... 44 5.4 1
(DC211327) Plasmodium berghei strain ANKA cDNA clone:MG01237... 44 5.4 1
(DB963405) Glycine max cDNA, clone: GMFL02-23-D07, 5'end. 44 5.4 1
(AM809261) Nicotiana tabacum EST, clone nt006147071. 44 5.4 1
(AM796812) Nicotiana tabacum EST, clone nt005186068. 44 5.4 1
(AM794185) Nicotiana tabacum EST, clone nt002304059. 44 5.4 1
(CX267635) 38RDBRM_UP_025_A03_12JUL2004_031 Brassica rapa 38... 44 5.4 1
(CX190784) 61-E010484-021-001-I15-T7R ADIS-MPIZ 021 Brassica... 44 5.4 1
(CU628457) Theobroma cacao, mRNA sequence (KZ0ABB12YC17FM1). 44 5.4 1
(CU625142) Theobroma cacao, mRNA sequence (KZ0ABE3YJ20FM1). 44 5.4 1
(CU550171) Theobroma cacao, mRNA sequence (KZ0AAS9YM24FM1). 44 5.4 1
(CU533514) Theobroma cacao, mRNA sequence (KZ0AAK9YC19FM1). 44 5.4 1
(AM058528) Brassica oleracea var. alboglabra EST, clone AAF... 44 5.4 1
(AM058475) Brassica oleracea var. alboglabra EST, clone AAF... 44 5.4 1
(CN828044) EL2662R Brassica embryo library (EL) Brassica nap... 44 5.4 1
(CK784729) UI-D-GC1-abb-a-01-0-UI.s1 UI-D-GC1 Alexandrium ta... 44 5.4 1
(CF715810) CCAHL22TF C.neoformans strain JEC21 Cryptococcus ... 44 5.4 1
(BW992348) Cryptomeria japonica cDNA, clone: CC10087, 3' end... 44 5.4 1
(BW992347) Cryptomeria japonica cDNA, clone: CC10087, 5' end... 44 5.4 1
(BW985346) Physa acuta cDNA, clone: Physa0127, 5' enriched P... 44 5.4 1
(BW625002) Lotus japonicus cDNA, clone: LjFL2-011-AD12, 5' e... 44 5.4 1
(BG881702) sae87f08.y1 Gm-c1065 Glycine max cDNA clone GENOM... 44 5.4 1
(BG321627) Ds01_05g12_A Ds01_AAFC_ECORC_cold_stressed_Flixwe... 44 5.4 1
(BG321420) Ds01_06f07_A Ds01_AAFC_ECORC_cold_stressed_Flixwe... 44 5.4 1
(BB975044) Plasmodium berghei str. ANKA cDNA clone: OK004862... 44 5.4 1
(BB975043) Plasmodium berghei str. ANKA cDNA clone: OK004861... 44 5.4 1
(BB221712) Mus musculus adult male aorta and vein cDNA, RIKE... 44 5.4 1
(FK880745) EST_crog_evp_911245 crog_evp Caligus rogercressey... 44 5.4 1
(FK619501) 454GmaGlobSeed354133 Soybean Seeds Containing Glo... 44 5.4 1
(FK397687) 454GmaGlobSeed132319 Soybean Seeds Containing Glo... 44 5.4 1
(FK380720) 454GmaGlobSeed115352 Soybean Seeds Containing Glo... 44 5.4 1
(FK344835) 454GmaGlobSeed79467 Soybean Seeds Containing Glob... 44 5.4 1
(FK338395) 454GmaGlobSeed73027 Soybean Seeds Containing Glob... 44 5.4 1
(FG172215) AGN_RNC128xa10r1.ab1 AGN_RNC Nicotiana tabacum cD... 44 5.4 1
(FG152752) AGN_RNC107xk04r1.ab1 AGN_RNC Nicotiana tabacum cD... 44 5.4 1
(FG150656) AGN_RNC112xk16r1.ab1 AGN_RNC Nicotiana tabacum cD... 44 5.4 1
(FD671281) CBHU1585.fwd CBHU Mycosphaerella fijiensis MfEST3... 44 5.4 1
(FD579220) RS3FA57TF RS3(RT) Raphanus sativus cDNA 5', mRNA ... 44 5.4 1
(FD570675) RS2FH35TF RS2(RS) Raphanus sativus cDNA 5', mRNA ... 44 5.4 1
(FD545010) RR3EO78JQ RR3(NY) Raphanus raphanistrum subsp. ra... 44 5.4 1
(FD536473) RR1FU65TF RR1(CS) Raphanus raphanistrum subsp. ma... 44 5.4 1
(FD531935) RR1FU65JQ RR1(CS) Raphanus raphanistrum subsp. ma... 44 5.4 1
(FC728026) CBBG4522.fwd CBBG Lottia gigantea 12,15,18h embry... 44 5.4 1
(EX909574) RS3CQ43JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ... 44 5.4 1
(EX045225) BR029869 floral bud cDNA library KBFL Brassica ra... 44 5.4 1
(EX031563) BR016207 callus cDNA library KBCG Brassica rapa s... 44 5.4 1
(EV573095) RR4AW32JQ RR4(PB) Raphanus raphanistrum subsp. la... 44 5.4 1
(EV568344) RR4AW32TF RR4(PB) Raphanus raphanistrum subsp. la... 44 5.4 1
(EV566466) RR4AB63TF RR4(PB) Raphanus raphanistrum subsp. la... 44 5.4 1
(EV542813) RR2BB48JQ RR2(MS) Raphanus raphanistrum subsp. ra... 44 5.4 1
(EV538900) RR2BB48TF RR2(MS) Raphanus raphanistrum subsp. ra... 44 5.4 1
(EV536621) RR2AL07TF RR2(MS) Raphanus raphanistrum subsp. ra... 44 5.4 1
(EV201056) 0102209 Brassica napus Cold acclimation - light B... 44 5.4 1
(EV200974) 0102127 Brassica napus Cold acclimation - light B... 44 5.4 1
(EV183021) 0156676 Brassica napus Etiolated seedlings (pSPOR... 44 5.4 1
(EV181392) 0153637 Brassica napus Etiolated seedlings (pSPOR... 44 5.4 1
(EV181306) 0153470 Brassica napus Etiolated seedlings (pSPOR... 44 5.4 1
(EV141410) 0207341 Brassica napus Very early anther Brassica... 44 5.4 1
(EV140933) 0206862 Brassica napus Very early anther Brassica... 44 5.4 1
(EV100503) 0181098 Brassica napus Leaf library Brassica napu... 44 5.4 1
(EV100433) 0180975 Brassica napus Leaf library Brassica napu... 44 5.4 1
(EV099903) 0180066 Brassica napus Leaf library Brassica napu... 44 5.4 1
(EV086538) BNSCS5CT_UP_123_D12_30MAY2007_090 Brassica napus ... 44 5.4 1
(EV045585) BNSCS3CT_UP_113_H06_07MAY2007_034 Brassica napus ... 44 5.4 1
(EV000260) BNAEN3GH_UP_106_B01_15SEP2006_013 Brassica napus ... 44 5.4 1
(ES913636) BNARO2GH_T3_027_B01_15DEC2006_013 Brassica napus ... 44 5.4 1
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 44 5.4 1
(AC147607) Mus musculus chromosome UNK clone RP23-448F11, WO... 36 5.5 4
(AC203352) Zea mays chromosome 3 clone ZMMBBb-423G24; ZMMBBb... 38 5.6 2
(AC206595) Zea mays chromosome 3 clone CH201-382D6; ZMMBBc03... 38 5.7 5
(AC183313) Zea mays chromosome 3 clone CH201-487A8; ZMMBBc04... 38 5.7 4
(AC102401) Mus musculus chromosome 1, clone RP24-257D18, com... 42 5.8 2
(AC164572) Mus musculus 6 BAC RP24-89J17 (Roswell Park Cance... 40 5.9 3
(AC117267) Dictyostelium discoideum chromosome 2 map 5836255... 34 5.9 5
(AC005066) Homo sapiens BAC clone CTB-118P15 from 8q21, comp... 40 5.9 5
(AL023094) Arabidopsis thaliana DNA chromosome 4, BAC clone ... 42 6.0 4
(CU695152) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 6.0 4
(EH010624) USDA-FP_183704 Lysiphlebus testaceipes adult whol... 40 6.1 2
(BH770976) LLMGtag701 MG1363 Random Sequence Tag Library Lac... 38 6.1 2
(AL355484) Human DNA sequence *** SEQUENCING CANCELLED *** f... 40 6.2 4
(AC136138) Medicago truncatula clone mth2-8f9, complete sequ... 42 6.3 4
(CU855497) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 6.3 2
(AC197967) Myotis lucifugus clone CH235-289C1, WORKING DRAFT... 40 6.4 2
(AC226658) Felis catus clone RP86-372P12, WORKING DRAFT SEQU... 40 6.6 4
(AC121823) Mus musculus BAC clone RP23-466I14 from chromosom... 42 6.6 2
(AC189170) Colobus guereza clone CH272-105E14, WORKING DRAFT... 40 7.1 2
(AC134139) Rattus norvegicus clone CH230-119C19, *** SEQUENC... 42 7.2 3
(AZ461299) 1M0267B12F Mouse 10kb plasmid UUGC1M library Mus ... 36 7.2 2
(CT009524) Human DNA sequence *** SEQUENCING IN PROGRESS ***... 42 7.3 3
(AP007348) Lotus japonicus genomic DNA, chromosome 1, clone:... 40 7.7 2
(AC079574) Mus musculus clone RP23-84J17, WORKING DRAFT SEQU... 42 7.9 2
(AC106453) Rattus norvegicus clone CH230-215I14, *** SEQUENC... 36 7.9 4
(AC215973) Felis catus clone RP86-204M4, WORKING DRAFT SEQUE... 40 7.9 4
(AC098599) Rattus norvegicus clone CH230-91B3, WORKING DRAFT... 42 8.0 2
(EK410074) 1095505158253 Global-Ocean-Sampling_GS-31-01-01-1... 36 8.0 2
(AJ698915) Gallus gallus ZPAX gene for zona pellucida protei... 38 8.0 3
(AC097138) Rattus norvegicus clone CH230-162D20, WORKING DRA... 42 8.1 2
(EG372608) 2S35 Peanut (Luhua14) seeds full length cDNA Libr... 40 8.3 2
(CZ288081) cp56c05.f Candida parapsilosis Random Genomic Lib... 38 8.5 2
(AM484633) Vitis vinifera contig VV78X214283.9, whole genome... 42 8.5 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 8.5 8
(AC215436) Solanum lycopersicum chromosome 2 clone C02HBa030... 42 8.6 3

>(C25604) Dictyostelium discoideum slug cDNA, clone SSA254.
Length = 542

Score = 763 bits (385), Expect(2) = 0.0
Identities = 397/397 (100%)
Strand = Plus / Plus


Query: 1 ggcagtgacccccctattgataacccccttcggaagtgcccataatagtgataatgacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcagtgacccccctattgataacccccttcggaagtgcccataatagtgataatgacaa 60


Query: 61 tgatggtagtgaaaatgcagaggaagaagaagaaggagatgacgacgtaaacagaagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgatggtagtgaaaatgcagaggaagaagaagaaggagatgacgacgtaaacagaagcca 120


Query: 121 agccagccctaaaatgaacagagaaataagagcacataccaagaacatgattaaaaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agccagccctaaaatgaacagagaaataagagcacataccaagaacatgattaaaaagat 180


Query: 181 taaagaattaaaagcacacgatgatacttttaatgaagcantcanantnatagatatcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 taaagaattaaaagcacacgatgatacttttaatgaagcantcanantnatagatatcaa 240


Query: 241 taaatggttacaaacaaagggctctgatatcatctcaagcgatggatctttagagtttga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taaatggttacaaacaaagggctctgatatcatctcaagcgatggatctttagagtttga 300


Query: 301 tataaaagagtgcatgcattcattggaagataagattaatgaattaaataatttaatgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tataaaagagtgcatgcattcattggaagataagattaatgaattaaataatttaatgga 360


Query: 361 aatttcttcactttgcaaaaacaataatgacactgga 397
|||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatttcttcactttgcaaaaacaataatgacactgga 397

Score = 107 bits (54), Expect(2) = 0.0
Identities = 54/54 (100%)
Strand = Plus / Plus


Query: 438 caaaattatctttttcttcaaatattatcaataatgacgaagatgatgttagat 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caaaattatctttttcttcaaatattatcaataatgacgaagatgatgttagat 491

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 625,285,336
Number of extensions: 44873573
Number of successful extensions: 6382759
Number of sequences better than 10.0: 523
Length of query: 541
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 518
Effective length of database: 99,442,330,388
Effective search space: 51511127140984
Effective search space used: 51511127140984
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.16
Homology vs Protein
Query= Contig-U01505-1 (Contig-U01505-1Q) /CSM_Contig/Contig-U01505-1Q.Seq.d
(541 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115684_15(AC115684|pid:none) Dictyostelium discoideum chromoso... 139 6e-32
AM270325_89(AM270325|pid:none) Aspergillus niger contig An14c018... 35 1.6
CP001103_2631(CP001103|pid:none) Alteromonas macleodii 'Deep eco... 34 2.8
AM999887_162(AM999887|pid:none) Wolbachia endosymbiont of Culex ... 33 3.6
CP001034_2577(CP001034|pid:none) Natranaerobius thermophilus JW/... 32 8.1

>AC115684_15(AC115684|pid:none) Dictyostelium discoideum chromosome
2 map 3108975-3191114 strain AX4, complete sequence.
Length = 108

Score = 139 bits (349), Expect = 6e-32
Identities = 74/108 (68%), Positives = 74/108 (68%)
Frame = +2

Query: 167 MIKKIKELKAHDDTFNEAXXXIDINKWLQTKGSDIISSDGSLEFDIKECMHSLEDKINEL 346
MIKKIKELKAHDDTFNEA IDINKWLQTKGSDIISSDGSLEFDIKECMHSLEDKINEL
Sbjct: 1 MIKKIKELKAHDDTFNEAFKFIDINKWLQTKGSDIISSDGSLEFDIKECMHSLEDKINEL 60

Query: 347 NNLMEISSLCKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEDDVR 490
NNLMEISSLCK DEDDVR
Sbjct: 61 NNLMEISSLCKNNNDTGNNNNNNNNNNNNKSKLSFSSNIINNDEDDVR 108

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 529,045,080
Number of extensions: 6984896
Number of successful extensions: 24927
Number of sequences better than 10.0: 5
Number of HSP's gapped: 24918
Number of HSP's successfully gapped: 5
Length of query: 180
Length of database: 1,051,180,864
Length adjustment: 120
Effective length of query: 60
Effective length of database: 662,793,784
Effective search space: 39767627040
Effective search space used: 39767627040
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)

PSORT

psg: 0.91 gvh: 0.55 alm: 0.55 top: 0.10 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: nuclear
24.0 %: cytoplasmic
24.0 %: extracellular, including cell wall
8.0 %: vacuolar
8.0 %: endoplasmic reticulum
4.0 %: vesicles of secretory system

>> prediction for Contig-U01505-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0