Contig-U01541-1
Contig ID Contig-U01541-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01541-1 (Contig-U01541-1Q) /CSM_Contig/Contig-U01541-1Q.Seq.d
GTTTAATAATTATAATTTTAAAACTACACATATAACAATAAATGGAGATA
TTACATTCTTTACCATTGATATCGTTTTAATATTCTTATATATTTCTCTA
TTAATTTTTACAACTGCATATACAAAAATAAAAAAATTACATTTTTTTTT
AATATTGGGGATTTTATTTAGAATTTTATCTTTTTC----------ATCC
GTAATATATTTATTTTTTGGTGTTTTATCATTTTTTATTGGTGACATGTC
TTTATTTAAAATTGTAAAAGAATTCAATAGAGATGATGGGTATTACATCA
ATTCATTTACAAAATTTAAATTTAAATTTGGAAAAGTTTTAATATTCAGT
ATGTTATATTTCTTTGTTCGTTTTATTATTACAATAACATTAATTTTCAC
ACCAATCGAACAAACACATGGTATTTTTGAAATTATTTTNTATAGTTTAT
TCGAAATTCTTCCAATATCACTAGCAATATGGATAATAGACAAACTTGAA
AATGAAGCAATTGAATTAAAAGATTCAAATGAAGAACCAGATAAATTCTC
TCACTTAAAAGAAGAAGAAAAAATATAAGAAAAAGTACTCACACACATAT
GGAATTTAAAATGCTTTACTTACAATTTTAATAAATAAATAAAAAAATTT
GGATAATA

Gap gap included
Contig length 648
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5940863
End point 5941433
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U01541
List of clone(s)

est1=SSB307F,1,187
est2=SSB307Z,188,650
Translated Amino Acid sequence
FNNYNFKTTHITINGDITFFTIDIVLIFLYISLLIFTTAYTKIKKLHFFLILGILFRILS
F---

---SVIYLFFGVLSFFIGDMSLFKIVKEFNRDDGYYINSFTKFKFKFGKVLIFSMLYFFV
RFIITITLIFTPIEQTHGIFEIIXYSLFEILPISLAIWIIDKLENEAIELKDSNEEPDKF
SHLKEEEKI*ekvlthiwnlkcftynfnk*ikkfg*


Translated Amino Acid sequence (All Frames)
Frame A:
v**l*f*nytynnkwryyilyh*yrfniliyfsinfynciyknkkitfffnigdfi*nfi
ff---

---irnififwcfiifyw*hvfi*nckriq*r*wvlhqfiyki*i*iwksfniqyviflc
sfyyynninfhtnrtntwyf*nyfx*firnssnitsnmdnrqt*k*sn*ikrfk*rtr*i
lslkrrrknirksththmefkmlylqf**inkkiwii

Frame B:
FNNYNFKTTHITINGDITFFTIDIVLIFLYISLLIFTTAYTKIKKLHFFLILGILFRILS
F---

---SVIYLFFGVLSFFIGDMSLFKIVKEFNRDDGYYINSFTKFKFKFGKVLIFSMLYFFV
RFIITITLIFTPIEQTHGIFEIIXYSLFEILPISLAIWIIDKLENEAIELKDSNEEPDKF
SHLKEEEKI*ekvlthiwnlkcftynfnk*ikkfg*

Frame C:
liiiilklhi*q*meilhslplisf*ysyifly*flqlhiqk*knyiff*ywgfylefyl
f---

---p*yiyflvfyhfllvtclylkl*knsiemmgitsihlqnlnlnlekf*ysvcyislf
vlllq*h*fshqsnkhmvflklfxivyskffqyh*qyg**tnlkmkqln*kiqmknqins
lt*kkkkkykkkyshtygi*nalltilink*knldn

own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01541-1 (Contig-U01541-1Q)
/CSM_Contig/Contig-U01541-1Q.Seq.d
(658 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01541-1 (Contig-U01541-1Q) /CSM_Contig/Conti... 620 e-178
Contig-U05239-1 (Contig-U05239-1Q) /CSM_Contig/Conti... 216 3e-56
Contig-U14901-1 (Contig-U14901-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U13873-1 (Contig-U13873-1Q) /CSM_Contig/Conti... 44 3e-04
Contig-U11255-1 (Contig-U11255-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U10958-1 (Contig-U10958-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U10820-1 (Contig-U10820-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U01610-1 (Contig-U01610-1Q) /CSM_Contig/Conti... 38 0.016
Contig-U14511-1 (Contig-U14511-1Q) /CSM_Contig/Conti... 36 0.064
Contig-U12742-1 (Contig-U12742-1Q) /CSM_Contig/Conti... 36 0.064

>Contig-U01541-1 (Contig-U01541-1Q) /CSM_Contig/Contig-U01541-1Q.Seq.d
Length = 658

Score = 620 bits (313), Expect = e-178
Identities = 316/316 (100%)
Strand = Plus / Plus


Query: 240 ggtgacatgtctttatttaaaattgtaaaagaattcaatagagatgatgggtattacatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ggtgacatgtctttatttaaaattgtaaaagaattcaatagagatgatgggtattacatc 299


Query: 300 aattcatttacaaaatttaaatttaaatttggaaaagttttaatattcagtatgttatat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aattcatttacaaaatttaaatttaaatttggaaaagttttaatattcagtatgttatat 359


Query: 360 ttctttgttcgttttattattacaataacattaattttcacaccaatcgaacaaacacat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttctttgttcgttttattattacaataacattaattttcacaccaatcgaacaaacacat 419


Query: 420 ggtatttttgaaattattttntatagtttattcgaaattcttccaatatcactagcaata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggtatttttgaaattattttntatagtttattcgaaattcttccaatatcactagcaata 479


Query: 480 tggataatagacaaacttgaaaatgaagcaattgaattaaaagattcaaatgaagaacca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tggataatagacaaacttgaaaatgaagcaattgaattaaaagattcaaatgaagaacca 539


Query: 540 gataaattctctcact 555
||||||||||||||||
Sbjct: 540 gataaattctctcact 555


Score = 315 bits (159), Expect = 5e-86
Identities = 177/186 (95%)
Strand = Plus / Plus


Query: 1 gtttaataattataattttaaaactacacatataacaataaatggagatattacattctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtttaataattataattttaaaactacacatataacaataaatggagatattacattctt 60


Query: 61 taccattgatatcgttttaatattcttatatatttctctattaatttttacaactgcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taccattgatatcgttttaatattcttatatatttctctattaatttttacaactgcata 120


Query: 121 tacaaaaataaaaaaattacannnnnnnnnaatattggggattttatttagaattttatc 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 121 tacaaaaataaaaaaattacatttttttttaatattggggattttatttagaattttatc 180


Query: 181 tttttc 186
||||||
Sbjct: 181 tttttc 186


Score = 109 bits (55), Expect = 5e-24
Identities = 55/55 (100%)
Strand = Plus / Plus


Query: 586 tactcacacacatatggaatttaaaatgctttacttacaattttaataaataaat 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tactcacacacatatggaatttaaaatgctttacttacaattttaataaataaat 640


Score = 36.2 bits (18), Expect = 0.064
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 312 aaatttaaatttaaattt 329
||||||||||||||||||
Sbjct: 329 aaatttaaatttaaattt 312


>Contig-U05239-1 (Contig-U05239-1Q) /CSM_Contig/Contig-U05239-1Q.Seq.d
Length = 332

Score = 216 bits (109), Expect = 3e-56
Identities = 109/109 (100%)
Strand = Plus / Plus


Query: 240 ggtgacatgtctttatttaaaattgtaaaagaattcaatagagatgatgggtattacatc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 ggtgacatgtctttatttaaaattgtaaaagaattcaatagagatgatgggtattacatc 64


Query: 300 aattcatttacaaaatttaaatttaaatttggaaaagttttaatattca 348
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 aattcatttacaaaatttaaatttaaatttggaaaagttttaatattca 113


Score = 194 bits (98), Expect = 1e-49
Identities = 107/110 (97%)
Strand = Plus / Plus


Query: 446 tttattcgaaattcttccaatatcactagcaatatggataatagacaaacttgaaaatga 505
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 114 tttattcgaaattcttccaatatcactagcaatatggctaatagacaaacttgaaaatga 173


Query: 506 agcaattgaattaaaagattcaaatgaagaaccagataaattctctcact 555
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 174 agcaattgaattaaaagattcaaatgaagaaccagataaataatctcact 223


Score = 109 bits (55), Expect = 5e-24
Identities = 55/55 (100%)
Strand = Plus / Plus


Query: 586 tactcacacacatatggaatttaaaatgctttacttacaattttaataaataaat 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tactcacacacatatggaatttaaaatgctttacttacaattttaataaataaat 308


Score = 36.2 bits (18), Expect = 0.064
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 312 aaatttaaatttaaattt 329
||||||||||||||||||
Sbjct: 94 aaatttaaatttaaattt 77


>Contig-U14901-1 (Contig-U14901-1Q) /CSM_Contig/Contig-U14901-1Q.Seq.d
Length = 617

Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus


Query: 301 attcatttacaaaatttaaatt 322
||||||||||||||||||||||
Sbjct: 435 attcatttacaaaatttaaatt 414


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 31,309
Number of Sequences: 8361
Number of extensions: 31309
Number of successful extensions: 5374
Number of sequences better than 10.0: 492
length of query: 658
length of database: 7,895,291
effective HSP length: 16
effective length of query: 642
effective length of database: 7,761,515
effective search space: 4982892630
effective search space used: 4982892630
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 1
Homology vs DNA
Query= Contig-U01541-1 (Contig-U01541-1Q) /CSM_Contig/Contig-U01541-1Q.Seq.d
(658 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C84211) Dictyostelium discoideum slug cDNA, clone SSB307. 585 0.0 2
(C94139) Dictyostelium discoideum slug cDNA, clone SSG455. 196 e-118 3
(AU071362) Dictyostelium discoideum slug cDNA, clone SSB307. 280 3e-86 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 34 3e-05 13
(AC232905) Mustela putorius furo clone CH237-67O24, WORKING ... 58 2e-04 2
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 38 4e-04 12
(AL034556) Plasmodium falciparum MAL3P5. 38 5e-04 7
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 36 5e-04 9
(EF568108) Glossina pallidipes salivary gland hypertrophy vi... 40 6e-04 10
(AX346433) Sequence 1504 from Patent WO0200928. 38 0.001 4
(CS468879) Sequence 70 from Patent EP1748080. 40 0.002 7
(CS419356) Sequence 70 from Patent WO2006094836. 40 0.002 7
(AE017308) Mycoplasma mobile 163K complete genome. 40 0.002 14
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 32 0.002 14
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 36 0.002 12
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 34 0.003 11
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 34 0.004 9
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.004 9
(AC196901) Microcebus murinus clone CH257-7M5, WORKING DRAFT... 38 0.006 6
(AL844506) Plasmodium falciparum chromosome 7. 34 0.007 14
(BE234326) 141158 MARC 1PIG Sus scrofa cDNA 5', mRNA sequence. 54 0.007 1
(AC115594) Dictyostelium discoideum chromosome 2 map 4071862... 34 0.008 6
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3... 34 0.009 11
(AX392733) Sequence 23 from Patent WO0212526. 36 0.010 5
(AR707080) Sequence 23 from patent US 6933145. 36 0.010 5
(AL035476) Plasmodium falciparum MAL4P3. 32 0.012 14
(AC092884) Homo sapiens chromosome 12 clone RP11-720K15, WOR... 40 0.020 7
(CU672247) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.025 5
(EI479023) PV_GBa0090M24.r PV_GBa Phaseolus vulgaris genomic... 52 0.027 1
(CS468878) Sequence 69 from Patent EP1748080. 34 0.030 9
(CS468877) Sequence 68 from Patent EP1748080. 34 0.030 9
(CS419355) Sequence 69 from Patent WO2006094836. 34 0.030 9
(CS419354) Sequence 68 from Patent WO2006094836. 34 0.030 9
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 34 0.031 10
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 36 0.036 9
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 0.040 9
(AX344819) Sequence 244 from Patent WO0200927. 40 0.044 3
(AC116967) Dictyostelium discoideum chromosome 2 map 5481549... 34 0.048 6
(AZ521914) 200PbA03 Pb MBN #21 Plasmodium berghei genomic 3'... 42 0.054 2
(AL844507) Plasmodium falciparum chromosome 8. 44 0.058 15
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 34 0.060 13
(BH481334) BOHHF52TF BOHH Brassica oleracea genomic clone BO... 42 0.065 2
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 36 0.068 9
(FB571381) Sequence 248 from Patent EP1865317. 34 0.083 8
(FB571325) Sequence 192 from Patent EP1865317. 34 0.083 8
(BD460417) Diagnosis of Diseases Associated with Cell Cycle. 38 0.085 4
(BD452339) Diagnosis of Diseases Associated with Cell Cycle. 38 0.085 4
(AX348748) Sequence 206 from Patent WO0202807. 38 0.085 4
(AX251953) Sequence 214 from Patent WO0168911. 38 0.085 4
(BX530719) Zebrafish DNA sequence from clone DKEYP-51D11 in ... 38 0.088 8
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 32 0.094 10
(AC006738) Caenorhabditis elegans clone Y37E11a, *** SEQUENC... 38 0.095 6
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61... 32 0.096 12
(AL034557) Plasmodium falciparum MAL4P1. 32 0.097 10
(FB571361) Sequence 228 from Patent EP1865317. 34 0.098 5
(FB571305) Sequence 172 from Patent EP1865317. 34 0.098 5
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 36 0.10 12
(AC099511) Homo sapiens chromosome 16 clone RP11-293N14, com... 38 0.11 6
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 0.11 10
(AP005204) Homo sapiens genomic DNA, chromosome 18 clone:RP1... 50 0.11 1
(AP002478) Homo sapiens genomic DNA, chromosome 18 clone:RP1... 50 0.11 1
(AC044911) Homo sapiens chromosome 18 clone RP11-340P19 map ... 50 0.11 1
(AP008034) Lotus japonicus genomic DNA, chromosome 6, clone:... 50 0.11 1
(AC188275) Callicebus moloch clone LB5-271A23, WORKING DRAFT... 50 0.11 1
(AC007832) Homo sapiens chromosome 18 clone RP11-352L24 map ... 50 0.11 1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 36 0.11 9
(AC009071) Homo sapiens chromosome 16 clone RP11-315K4, WORK... 38 0.12 6
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.13 12
(AL390865) Human DNA sequence from clone RP11-161L14 on chro... 48 0.14 6
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 34 0.14 9
(AF547983) Schizosaccharomyces japonicus mitochondrial DNA, ... 38 0.15 6
(EF050161) Anelosimus arizona voucher 060A 16S ribosomal RNA... 30 0.16 4
(CP000743) Methanococcus aeolicus Nankai-3, complete genome. 44 0.16 16
(AC215476) Solanum lycopersicum chromosome 2 clone C02SLm002... 34 0.16 8
(BD452751) Diagnosis of Diseases Associated with tumor suppr... 36 0.16 5
(AX346365) Sequence 1436 from Patent WO0200928. 36 0.16 5
(AX251230) Sequence 198 from Patent WO0168912. 36 0.16 5
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 40 0.18 9
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 30 0.18 11
(BD452885) Diagnosis of Diseases Associated with tumor suppr... 34 0.19 4
(AX251364) Sequence 332 from Patent WO0168912. 34 0.19 4
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s... 38 0.19 10
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 0.21 11
(AC232577) Brassica rapa subsp. pekinensis clone KBrS012H21,... 38 0.22 5
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 0.22 11
(EK084194) 1092961129836 Global-Ocean-Sampling_GS-31-01-01-1... 40 0.22 2
(AM451344) Vitis vinifera contig VV78X089997.2, whole genome... 34 0.22 4
(AC224251) Bos taurus clone CH240-445K15, WORKING DRAFT SEQU... 34 0.23 10
(AC225294) Monodelphis domestica clone VMRC18-825N4, WORKING... 40 0.23 4
(FJ429367) Carica papaya clone 55B21, *** SEQUENCING IN PROG... 36 0.25 7
(ER587586) 1093016159466 Global-Ocean-Sampling_GS-36-01-01-2... 34 0.25 3
(FB571362) Sequence 229 from Patent EP1865317. 32 0.26 6
(FB571306) Sequence 173 from Patent EP1865317. 32 0.26 6
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 46 0.27 11
(AM618106) Entamoeba invadens IP1 GSS, clone inv107d10.p1k. 36 0.29 3
(DD010736) Diagnosis of known genetic Parameters within the ... 38 0.30 7
(AC140923) Mus musculus BAC clone RP24-373O2 from chromosome... 38 0.32 4
(BD428828) Method and nucleic acids for pharmacogenomic meth... 36 0.33 4
(AX348307) Sequence 2 from Patent WO0202806. 36 0.33 4
(AX345007) Sequence 78 from Patent WO0200928. 36 0.33 4
(AC145469) Mus musculus BAC clone RP24-88I20 from chromosome... 38 0.36 4
(AJ928824) Theileria annulata EST, clone tam020e09_q1k. 38 0.36 2
(EJ503308) 1095403664327 Global-Ocean-Sampling_GS-28-01-01-1... 36 0.36 3
(AF083031) Guillardia theta nucleomorph chromosome 3, comple... 32 0.39 8
(AF274444) Carsonella ruddii ribosomal protein L11 (rpL11), ... 36 0.39 4
(AY900632) Drosophila buzzatii clone BAC 40C11, complete seq... 42 0.40 4
(CP001318) Borrelia garinii Far04 plasmid Far04_lp54, comple... 34 0.41 6
(AC178394) Strongylocentrotus purpuratus clone R3-3110J21, W... 38 0.42 3
(AC182488) Mus musculus BAC clone RP24-65I16 from chromosome... 38 0.42 4
(BX005086) Mouse DNA sequence from clone RP23-149N22 on chro... 48 0.43 1
(AL132709) Human chromosome 14 DNA sequence BAC R-909M7 of l... 48 0.43 1
(AC152190) Bos taurus clone CH240-8D14, WORKING DRAFT SEQUEN... 48 0.43 1
(AC119495) Rattus norvegicus clone CH230-522F15, WORKING DRA... 48 0.43 1
(AC096232) Rattus norvegicus clone CH230-37K1, WORKING DRAFT... 48 0.43 1
(AC027765) Homo sapiens chromosome 14 clone RP11-617C19 map ... 48 0.43 1
(AC174897) Bos taurus clone CH240-235M22, WORKING DRAFT SEQU... 48 0.43 1
(FH724758) CHO_OF5003xi12f1.ab1 CHO_OF5 Nicotiana tabacum ge... 48 0.43 1
(AM649904) Entamoeba moshkovskii FIC GSS, clone mosh071f11.q1k. 48 0.43 1
(DE894139) Macropus eugenii DNA, BAC clone: MEB1-071O07_R, 3... 48 0.43 1
(CC303666) CH261-173D14_Sp6.1 CH261 Gallus gallus genomic cl... 48 0.43 1
(BX976581) Forward strand read from insert in 5'HPRT inserti... 48 0.43 1
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8... 32 0.43 10
(AC182251) Mus musculus BAC clone RP24-346L19 from chromosom... 38 0.44 3
(AL049835) Human chromosome 14 DNA sequence BAC R-862P13 of ... 38 0.45 6
(AC009804) Homo sapiens 12 BAC RP11-411G2 (Roswell Park Canc... 38 0.46 4
(AC145567) Mus musculus BAC clone RP24-89I11 from chromosome... 38 0.46 4
(FI383179) CH322-05N14.x CHORI-322 Drosophila melanogaster g... 40 0.49 2
(AC184538) Strongylocentrotus purpuratus clone R3-3110J18, W... 38 0.50 3
(AL035477) Plasmodium falciparum MAL4P4. 36 0.50 9
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 0.51 12
(AX345529) Sequence 600 from Patent WO0200928. 36 0.52 5
(AC174796) Teramnus labialis clone tl1-74n2, WORKING DRAFT S... 38 0.53 6
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6... 34 0.53 11
(AC096447) Rattus norvegicus clone CH230-117J7, WORKING DRAF... 46 0.53 7
(DR735619) FGAS081274 Triticum aestivum FGAS: Library 4 Gate... 38 0.55 3
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 32 0.56 10
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 32 0.56 11
(AC037483) Homo sapiens chromosome 18 clone RP11-120D11 map ... 40 0.57 5
(AY198133) Spiroplasma kunkelii strain CR2-3x partial genome... 36 0.58 6
(AC160189) Bos taurus clone CH240-84H23, WORKING DRAFT SEQUE... 40 0.60 5
(AR518708) Sequence 23668 from patent US 6703491. 40 0.61 2
(AR503426) Sequence 8386 from patent US 6703491. 40 0.61 2
(EJ963398) 1093022021238 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.61 2
(EC064457) 340552 CK01 Drosophila melanogaster cDNA clone 83... 40 0.61 2
(AJ511533) Candida glabrata complete mitochondrial genome. 38 0.61 5
(AC154901) Prunus persica (peach) BAC clone 82I18, complete ... 36 0.62 7
(AC007483) Homo sapiens, clone RP11-72A1, complete sequence. 34 0.64 5
(AC179942) Strongylocentrotus purpuratus clone R3-21N07, WOR... 38 0.66 6
(CU914733) H.numata DNA sequence from clone AEHN-38C19. 40 0.67 5
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 32 0.67 11
(CP000776) Campylobacter hominis ATCC BAA-381, complete genome. 36 0.70 12
(FI381340) CH322-02M24.x CHORI-322 Drosophila melanogaster g... 40 0.71 2
(CU980348) Brassica napus GSS, clone JBnB111L20, end read, p... 40 0.73 2
(AP006415) Lotus japonicus genomic DNA, chromosome 6, clone:... 34 0.74 7
(CP000551) Prochlorococcus marinus str. AS9601, complete gen... 34 0.74 16
(AF538053) Monosiga brevicollis mitochondrion, complete genome. 32 0.76 7
(AC200686) Mus musculus BAC clone CH36-369B1 from chromosome... 38 0.76 3
(AC220753) Bos taurus clone CH240-348C14, WORKING DRAFT SEQU... 32 0.77 8
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 38 0.78 17
(AL732392) Mouse DNA sequence from clone RP23-171G10 on chro... 44 0.78 5
(AX344567) Sequence 18 from Patent WO0200932. 32 0.80 10
(BJ443577) Dictyostelium discoideum cDNA clone:ddv53j12, 3' ... 40 0.81 2
(BD460624) Diagnosis of Diseases Associated with Cell Cycle. 34 0.81 4
(BD452546) Diagnosis of Diseases Associated with Cell Cycle. 34 0.81 4
(AX348897) Sequence 355 from Patent WO0202807. 34 0.81 4
(AX252160) Sequence 421 from Patent WO0168911. 34 0.81 4
(AX345369) Sequence 440 from Patent WO0200928. 34 0.82 5
(CX030824) 1342869 NCCCWA 10RT#3 Oncorhynchus mykiss cDNA cl... 34 0.83 3
(AP000278) Homo sapiens genomic DNA, chromosome 21 clone:PQ6... 32 0.85 4
(CU929620) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.85 6
(AC187019) Canis Familiaris chromosome 29, clone XX-120N4, c... 38 0.86 7
(AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 34 0.86 9
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3... 38 0.86 9
(AM451877) Vitis vinifera, whole genome shotgun sequence, co... 46 0.87 3
(AC173683) Bos taurus clone CH240-186L4, WORKING DRAFT SEQUE... 34 0.90 2
(AC172044) Bos taurus clone CH240-303M3, WORKING DRAFT SEQUE... 36 0.90 2
(AC182699) Populus trichocarpa clone Pop1-72K24, complete se... 34 0.91 6
(EJ960077) 1093018997833 Global-Ocean-Sampling_GS-30-02-01-1... 38 0.92 2
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome. 34 0.92 14
(AC175111) Bos taurus clone CH240-78M10, WORKING DRAFT SEQUE... 34 0.92 2
(CR855306) Zebrafish DNA sequence from clone CH211-197D11. 34 0.92 2
(CU929130) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 0.93 6
(AC193009) Pan troglodytes BAC clone CH251-623J17 from chrom... 42 0.93 4
(DQ927305) Tetrahymena pigmentosa strain UM1060 mitochondrio... 36 0.94 5
(AC211305) Populus trichocarpa clone POP004-I01, complete se... 36 0.94 5
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.95 9
(AY863212) Rhizopus oryzae mitochondrion, complete genome. 32 0.96 6
(EK170638) 1095458072329 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.96 2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 32 0.96 9
(AC167740) Bos taurus clone CH240-201G17, WORKING DRAFT SEQU... 36 0.96 5
(BD428964) Method and nucleic acids for pharmacogenomic meth... 30 0.97 5
(AX348443) Sequence 138 from Patent WO0202806. 30 0.97 5
(BX470256) Zebrafish DNA sequence from clone CH211-279A3 in ... 34 0.98 6
(FP236360) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.98 5
(EF203088) Gryllus bimaculatus nudivirus, complete genome. 32 0.98 6
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 32 1.00 13
(EJ534585) 1092955251486 Global-Ocean-Sampling_GS-29-01-01-1... 30 1.00 4
(EK042077) 1092959526161 Global-Ocean-Sampling_GS-31-01-01-1... 38 1.0 2
(EJ937251) 1093018845062 Global-Ocean-Sampling_GS-30-02-01-1... 38 1.0 2
(AC109799) Bos taurus clone RP42-87M16, WORKING DRAFT SEQUENCE. 36 1.0 7
(AC173468) Loxodonta africana clone VMRC15-410C23, WORKING D... 40 1.1 4
(X55026) Podospora anserina complete mitochondrial genome. 36 1.1 5
(CU633245) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 1.1 6
(AM459476) Vitis vinifera, whole genome shotgun sequence, co... 40 1.1 5
(CU927964) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 1.1 7
(GM694820) Sequence 59 from Patent WO2008087040. 32 1.1 4
(CG202936) PUFYN60TD ZM_0.6_1.0_KB Zea mays genomic clone ZM... 44 1.1 2
(AX344568) Sequence 19 from Patent WO0200932. 34 1.1 7
(AP007176) Aspergillus oryzae RIB40 mitochondrial DNA, compl... 42 1.1 4
(AC167850) Bos taurus clone CH240-200A9, WORKING DRAFT SEQUE... 40 1.1 8
(CT421770) Sus scrofa genomic clone PigE-39G9, genomic surve... 32 1.2 2
(CZ395013) ZMMBF0174I06f ZMMBF Zea mays genomic clone ZMMBF0... 36 1.2 2
(AC180004) Strongylocentrotus purpuratus clone R3-3036M14, W... 38 1.2 4
(BM288073) 528954 MARC 3BOV Bos taurus cDNA 5', mRNA sequence. 36 1.2 2
(AC128300) Rattus norvegicus clone CH230-233G6, *** SEQUENCI... 46 1.2 5
(EJ696285) 1092956019093 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.2 3
(AC096429) Rattus norvegicus clone CH230-160A18, *** SEQUENC... 36 1.2 6
(EK434759) 1095521023323 Global-Ocean-Sampling_GS-31-01-01-1... 30 1.2 3
(AC004688) Plasmodium falciparum chromosome 12 clone PFYAC69... 36 1.3 10
(AL844509) Plasmodium falciparum chromosome 13. 36 1.3 12
(AX346059) Sequence 1130 from Patent WO0200928. 36 1.3 5
(DX397909) GH__Sa0005H05.b1 Gossypium herbaceum WGS library ... 36 1.3 3
(GN008457) Sequence 898 from Patent EP2014669. 40 1.3 3
(AC107715) Mus musculus chromosome 10, clone RP24-376I19, co... 38 1.4 5
(CN568302) tag45a08.y1 Hydra EST -Kiel 2 Hydra magnipapillat... 36 1.4 3
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 36 1.4 7
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 34 1.5 8
(DT770377) 125669220 TH1 Tribolium castaneum cDNA clone 76E1... 30 1.5 3
(AC006901) Caenorhabditis elegans clone Y74A11X, *** SEQUENC... 42 1.5 7
(AC167136) Mus musculus chromosome 3 clone RP24-173L22 map 3... 34 1.5 4
(AM440649) Vitis vinifera contig VV78X116806.7, whole genome... 38 1.5 3
(EK117404) 1092963260576 Global-Ocean-Sampling_GS-31-01-01-1... 34 1.5 3
(CR855054) Oryza sativa genomic DNA, chromosome 4, BAC clone... 38 1.5 4
(AC162300) Mus musculus chromosome 3, clone RP23-224F23, com... 36 1.6 5
(AC231927) Medicago truncatula chromosome 7 clone mth2-58c15... 42 1.6 5
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 34 1.6 8
(AL591888) Human DNA sequence from clone RP11-333H8 on chrom... 36 1.6 5
(AC226506) Solanum lycopersicum chromosome 2 clone C02HBa011... 40 1.6 4
(AC189529) Brassica rapa subsp. pekinensis clone KBrB092P05,... 38 1.6 4
(AC192623) Gallus gallus BAC clone CH261-96K7 from chromosom... 46 1.7 1
(AC207596) Pan troglodytes BAC clone CH251-519H10 from chrom... 46 1.7 1
(CT573029) M.truncatula DNA sequence from clone MTH2-67H11 o... 46 1.7 1
(AM453759) Vitis vinifera, whole genome shotgun sequence, co... 46 1.7 1
(AC142498) Medicago truncatula clone mth2-24a18, complete se... 46 1.7 1
(AC123571) Medicago truncatula clone mth1-14n3, complete seq... 46 1.7 1
(AC099520) Homo sapiens chromosome 5 clone RP11-6N13, comple... 46 1.7 1
(AC012602) Homo sapiens chromosome 5 clone CTC-328N13, compl... 46 1.7 1
(AC162404) Bos taurus clone CH240-115I9, WORKING DRAFT SEQUE... 46 1.7 1
(AC150721) Callithrix jacchus clone CH259-230J2, WORKING DRA... 46 1.7 1
(AC120726) Rattus norvegicus clone CH230-176N20, *** SEQUENC... 46 1.7 1
(AC055808) Homo sapiens chromosome 3 clone RP11-275K4 map 3,... 46 1.7 1
(AY714850) Uncultured archaeon GZfos28G7 clone GZfos28G7, **... 46 1.7 1
(AC224229) Bos taurus clone CH240-446A19, WORKING DRAFT SEQU... 46 1.7 1
(AC213455) Zea mays chromosome 7 clone CH201-480O21; ZMMBBc0... 46 1.7 1
(AC212234) Zea mays chromosome 7 clone CH201-261P9; ZMMBBc02... 46 1.7 1
(AC188256) Ateles geoffroyi clone UC1-127P9, WORKING DRAFT S... 46 1.7 1
(AC166668) Bos taurus clone CH240-182L7, WORKING DRAFT SEQUE... 46 1.7 1
(AC012288) Homo sapiens clone RP11-6N13, WORKING DRAFT SEQUE... 46 1.7 1
(AQ579781) T135276b shotgun sub-library of BAC clone 14N03 M... 46 1.7 1
(EK227758) 1095460164471 Global-Ocean-Sampling_GS-31-01-01-1... 46 1.7 1
(EJ907925) 1093018522736 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.7 1
(EJ900443) 1093018486256 Global-Ocean-Sampling_GS-30-02-01-1... 46 1.7 1
(EJ409947) 1093012132242 Global-Ocean-Sampling_GS-28-01-01-1... 46 1.7 1
(EJ107365) 1092343141693 Global-Ocean-Sampling_GS-27-01-01-1... 46 1.7 1
(ED736900) GM_WBb0096I11.f GM_WBb Glycine max genomic clone ... 46 1.7 1
(DH578886) Rattus norvegicus DNA, BAC clone: RNB1-097B07, 3'... 46 1.7 1
(CW124526) 104_504_11111828_116_34706_074 Sorghum methylatio... 46 1.7 1
(CT977536) Equus caballus GSS, BAC clone CH241-61I7, T7 end ... 46 1.7 1
(CG121540) PUFUS68TB ZM_0.6_1.0_KB Zea mays genomic clone ZM... 46 1.7 1
(DW882451) MSAM080158_3500_0095 LCM-dissected maize shoot ap... 46 1.7 1
(CV467736) Mdfrt3093p10.y3 Mdfrt Malus x domestica cDNA clon... 46 1.7 1
(CV128652) Mdfrt3089l05.y1 Mdfrt Malus x domestica cDNA clon... 46 1.7 1
(BP188185) Dugesia japonica cDNA, clone: 00714_HH, expressed... 46 1.7 1
(FF331456) 280446471 Pea aphid whole body normalized full le... 46 1.7 1
(EY644353) CAWW7313.fwd CAWW Capitella sp. I ECS-2004 Subtra... 46 1.7 1
(EY644352) CAWW7313.rev CAWW Capitella sp. I ECS-2004 Subtra... 46 1.7 1
(EX653059) 256780702 Pea aphid whole body normalized full le... 46 1.7 1
(EX652507) 256771777 Pea aphid whole body normalized full le... 46 1.7 1
(EV235072) VV_PEb18a09.b1 Vitis vinifera cv. perlette LibB V... 46 1.7 1
(ES598478) TINL-P13_D07.AB1 Triatoma infestans salivary glan... 46 1.7 1
(EJ675195) 1092955075627 Global-Ocean-Sampling_GS-30-02-01-1... 34 1.7 3
(DD010735) Diagnosis of known genetic Parameters within the ... 36 1.7 10
(U64605) Caenorhabditis elegans cosmid C05D9, complete seque... 38 1.7 4
(AC226194) Mus musculus chromosome Y clone RP24-62O3, WORKIN... 38 1.8 7
(DJ386702) Diagnosis of Diseases Associated with Metastasis. 42 1.8 3
(AX281498) Sequence 162 from Patent WO0177376. 42 1.8 3
(AC134846) Mus musculus BAC clone RP24-435N3 from chromosome... 38 1.9 4
(AC116918) Dictyostelium discoideum chromosome 2 map 6143698... 34 1.9 5
(DJ060298) Method and nucleic acids for the improved treatme... 34 1.9 3
(DJ060176) Method and nucleic acids for the improved treatme... 34 1.9 3
(CS124645) Sequence 331 from Patent WO2005059172. 34 1.9 3
(CS124523) Sequence 209 from Patent WO2005059172. 34 1.9 3
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 32 1.9 11
(AM485196) Vitis vinifera contig VV78X026452.8, whole genome... 38 2.0 2
(AC104472) Homo sapiens 3 BAC RP11-674E16 (Roswell Park Canc... 36 2.0 4
(AE002149) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 34 2.0 5
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 34 2.1 7
(AC173706) Mus musculus BAC clone RP24-264J10 from chromosom... 38 2.1 4
(AC179443) Strongylocentrotus purpuratus clone R3-1040H19, W... 36 2.1 4
(AM453336) Vitis vinifera contig VV78X008880.14, whole genom... 36 2.2 4
(FJ362376) Caenorhabditis sp. PS1010 contig JD02, partial se... 30 2.2 8
(FB571382) Sequence 249 from Patent EP1865317. 34 2.2 6
(FB571326) Sequence 193 from Patent EP1865317. 34 2.2 6
(EU024653) Polistes sp. MD1 mitochondrion, partial genome. 36 2.2 4
(AC233062) Solanum lycopersicum chromosome 9 clone C09HBa004... 32 2.4 6
(CR374748) AGENAE Rainbow trout normalized testis library (t... 34 2.4 3
(AL731765) Human DNA sequence from clone RP11-268L7 on chrom... 38 2.4 4
(EC821221) SME00010307 esmbsro2 Sawyeria marylandensis cDNA,... 34 2.4 2
(CP001158) Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisu... 32 2.5 11
(CE503987) tigr-gss-dog-17000327351795 Dog Library Canis lup... 38 2.5 2
(AC193727) Colobus guereza clone CH272-89H17, WORKING DRAFT ... 32 2.6 5
(AL136315) Human DNA sequence from clone RP4-717B15 on chrom... 38 2.6 5
(AE008655) Rickettsia conorii str. Malish 7, section 87 of 1... 44 2.6 2
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 32 2.6 8
(AC069110) Homo sapiens chromosome 1 clone RP11-302J17 map 1... 34 2.6 8
(AC231371) Medicago truncatula clone mth2-16m12, WORKING DRA... 38 2.6 6
(AP003625) Oryza sativa Japonica Group genomic DNA, chromoso... 32 2.6 5
(AC221082) Bos taurus clone CH240-392K22, WORKING DRAFT SEQU... 36 2.7 3
(AP009901) Lotus japonicus genomic DNA, clone: LjT11L09, TM2... 36 2.7 6
(BD452690) Diagnosis of Diseases Associated with tumor suppr... 32 2.7 3
(AX251169) Sequence 137 from Patent WO0168912. 32 2.7 3
(AC219213) Solanum lycopersicum chromosome 6 clone C06HBa014... 36 2.7 4
(CR847567) Zebrafish DNA sequence from clone CH211-233B17 in... 36 2.8 6
(AC218711) Bos taurus clone CH240-296D5, WORKING DRAFT SEQUE... 32 2.8 6
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 2.8 9
(AC124075) Homo sapiens chromosome 8, clone RP11-918D7, comp... 36 2.8 4
(CZ518860) GMW2-83B15a.g1 GMW2 Glycine max genomic, genomic ... 30 2.8 4
(EI294439) GM_WBc0017L13.r GM_WBc Glycine max genomic clone ... 42 2.8 2
(CX140358) 1279753 NCCCWA 03RT Oncorhynchus mykiss cDNA clon... 34 2.8 3
(CU481320) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.9 5
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 36 2.9 8
(AX323730) Sequence 218 from Patent WO0192565. 34 2.9 4
(GM996078) Sequence 218 from Patent EP2014776. 34 2.9 4
(AC183984) Pan troglodytes BAC clone CH251-312K18 from chrom... 38 2.9 4
(AG043077) Pan troglodytes DNA, clone: PTB-021E13.F. 36 3.0 2
(C92516) Dictyostelium discoideum slug cDNA, clone SSE512. 32 3.0 3
(AC111368) Rattus norvegicus clone CH230-85C6, WORKING DRAFT... 36 3.0 6
(AC017051) Homo sapiens chromosome UL clone RP11-331H9, WORK... 32 3.0 8
(AC160811) Bos taurus clone CH240-91L19, WORKING DRAFT SEQUE... 38 3.1 4
(BH989682) oei79c05.b1 B.oleracea002 Brassica oleracea genom... 38 3.1 2
(BX571738) Zebrafish DNA sequence from clone CH211-64K10 in ... 38 3.1 5
(AC173260) Bos taurus clone CH240-126N8, WORKING DRAFT SEQUE... 32 3.1 2
(ER475263) 1092963997537 Global-Ocean-Sampling_GS-35-01-01-1... 32 3.1 3
(AC231051) Bos taurus clone CH240-492G16, WORKING DRAFT SEQU... 32 3.1 2
(AC221989) Bos taurus clone CH240-376L4, WORKING DRAFT SEQUE... 32 3.1 2
(AC220190) Bos taurus clone CH240-365K7, WORKING DRAFT SEQUE... 32 3.1 2
(AC225001) Bos taurus clone CH240-470D20, WORKING DRAFT SEQU... 32 3.2 2
(AC221223) Bos taurus clone CH240-400B16, WORKING DRAFT SEQU... 32 3.2 2
(AC224549) Bos taurus clone CH240-482G18, WORKING DRAFT SEQU... 32 3.2 2
(AC224182) Bos taurus clone CH240-447E4, WORKING DRAFT SEQUE... 32 3.2 2
(AC219588) Bos taurus clone CH240-328J15, WORKING DRAFT SEQU... 32 3.2 2
(AC231053) Bos taurus clone CH240-492H17, WORKING DRAFT SEQU... 32 3.2 2
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 32 3.2 12
(BX323087) Zebrafish DNA sequence from clone CH211-212J22 in... 40 3.2 4
(AM462115) Vitis vinifera contig VV78X201055.17, whole genom... 34 3.2 3
(AC108235) Rattus norvegicus clone CH230-103M23, *** SEQUENC... 32 3.2 2
(AC223909) Bos taurus clone CH240-454L19, WORKING DRAFT SEQU... 32 3.2 2
(AC164338) Bos taurus clone CH240-150K2, *** SEQUENCING IN P... 32 3.2 2
(AC223819) Bos taurus clone CH240-457E7, WORKING DRAFT SEQUE... 32 3.2 2
(AC222828) Bos taurus clone CH240-437L15, WORKING DRAFT SEQU... 32 3.2 2
(AC169601) Bos taurus clone CH240-202E19, WORKING DRAFT SEQU... 32 3.2 2
(AC170394) Bos taurus clone CH240-217G20, WORKING DRAFT SEQU... 32 3.2 2
(AC160364) Bos taurus clone CH240-88J14, WORKING DRAFT SEQUE... 32 3.2 2
(AC158017) Bos taurus clone CH240-159F2, WORKING DRAFT SEQUE... 32 3.2 2
(AC230644) Bos taurus clone CH240-503B10, WORKING DRAFT SEQU... 32 3.2 2
(AC164191) Bos taurus clone CH240-150H15, *** SEQUENCING IN ... 32 3.2 2
(AC175418) Bos taurus clone CH240-518A20, WORKING DRAFT SEQU... 32 3.2 2
(AC164856) Bos taurus clone CH240-145I22, *** SEQUENCING IN ... 32 3.2 2
(AC168939) Bos taurus clone CH240-203K11, WORKING DRAFT SEQU... 32 3.2 2
(AC163802) Bos taurus clone CH240-147H17, *** SEQUENCING IN ... 32 3.2 2
(AC160678) Bos taurus clone CH240-96G24, WORKING DRAFT SEQUE... 32 3.2 2
(AC161395) Bos taurus clone CH240-93L18, WORKING DRAFT SEQUE... 32 3.2 2
(AC152612) Bos taurus clone CH240-14H15, *** SEQUENCING IN P... 32 3.2 2
(AC171591) Bos taurus clone CH240-282J15, WORKING DRAFT SEQU... 32 3.2 2
(AC156965) Bos taurus clone CH240-64B9, WORKING DRAFT SEQUEN... 32 3.2 2
(AC175469) Bos taurus clone CH240-106H24, WORKING DRAFT SEQU... 32 3.2 2
(AX344573) Sequence 24 from Patent WO0200932. 38 3.2 7
(AX344574) Sequence 25 from Patent WO0200932. 36 3.2 7
(AC157169) Bos taurus clone CH240-67L23, WORKING DRAFT SEQUE... 32 3.2 2
(AC220184) Bos taurus clone CH240-365H1, WORKING DRAFT SEQUE... 32 3.2 2
(AC221928) Bos taurus clone CH240-377J7, WORKING DRAFT SEQUE... 32 3.2 2
(AC155193) Bos taurus clone CH240-42D18, WORKING DRAFT SEQUE... 32 3.2 2
(AC221324) Bos taurus clone CH240-403J7, WORKING DRAFT SEQUE... 32 3.2 2
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 3.2 12
(AC156683) Bos taurus clone CH240-61A20, WORKING DRAFT SEQUE... 32 3.2 2
(AC165912) Bos taurus clone CH240-173F17, *** SEQUENCING IN ... 32 3.2 2
(AC160298) Bos taurus clone CH240-86D12, WORKING DRAFT SEQUE... 32 3.2 2
(AC160475) Bos taurus clone CH240-82G17, WORKING DRAFT SEQUE... 32 3.2 2
(AC157045) Bos taurus clone CH240-63P23, WORKING DRAFT SEQUE... 32 3.2 2
(AC218361) Bos taurus clone CH240-285G17, WORKING DRAFT SEQU... 32 3.2 2
(AC165038) Bos taurus clone CH240-158N23, WORKING DRAFT SEQU... 32 3.2 2
(AC156817) Bos taurus clone CH240-60P1, WORKING DRAFT SEQUEN... 32 3.2 2
(AC182919) Bos taurus clone CH240-307K3, WORKING DRAFT SEQUE... 32 3.3 2
(AC157343) Bos taurus clone CH240-50H18, WORKING DRAFT SEQUE... 32 3.3 2
(AC224999) Bos taurus clone CH240-470D12, WORKING DRAFT SEQU... 32 3.3 2
(AC222037) Bos taurus clone CH240-374H23, WORKING DRAFT SEQU... 32 3.3 2
(AC224556) Bos taurus clone CH240-481K4, WORKING DRAFT SEQUE... 32 3.3 2
(AC188789) Callithrix jacchus BAC clone CH259-33H12 from chr... 34 3.3 2
(AC182944) Bos taurus clone CH240-273E22, WORKING DRAFT SEQU... 32 3.3 2
(AC159724) Bos taurus clone CH240-79H23, WORKING DRAFT SEQUE... 32 3.3 2
(AC173141) Bos taurus clone CH240-453K20, WORKING DRAFT SEQU... 32 3.3 2
(AC165569) Bos taurus clone CH240-161H16, WORKING DRAFT SEQU... 32 3.3 2
(AC223896) Bos taurus clone CH240-455D16, WORKING DRAFT SEQU... 32 3.3 2
(AC175158) Bos taurus clone CH240-307L3, WORKING DRAFT SEQUE... 32 3.3 2
(AC183025) Bos taurus clone CH240-119A7, WORKING DRAFT SEQUE... 32 3.3 2
(BZ438266) BONPD40TR BO_1.6_2_KB_tot Brassica oleracea genom... 38 3.3 2
(AC220345) Bos taurus clone CH240-361D22, WORKING DRAFT SEQU... 32 3.3 2
(AC154979) Bos taurus clone CH240-27F23, WORKING DRAFT SEQUE... 32 3.3 2
(AC220350) Bos taurus clone CH240-361E22, WORKING DRAFT SEQU... 32 3.3 2
(AC222101) Bos taurus clone CH240-372A3, WORKING DRAFT SEQUE... 32 3.3 2
(AC173142) Bos taurus clone CH240-467O6, WORKING DRAFT SEQUE... 32 3.3 2
(AC172498) Bos taurus clone CH240-271F19, WORKING DRAFT SEQU... 32 3.3 2
(CW087735) 104_432_10947805_116_32554_055 Sorghum methylatio... 42 3.3 2
(AC164716) Bos taurus clone CH240-161G22, WORKING DRAFT SEQU... 32 3.3 2
(AC169556) Bos taurus clone CH240-225L23, WORKING DRAFT SEQU... 32 3.3 2
(AC172495) Bos taurus clone CH240-89O3, WORKING DRAFT SEQUEN... 32 3.3 2
(AC169707) Bos taurus clone CH240-255L9, WORKING DRAFT SEQUE... 32 3.3 2
(AC214588) Bos taurus clone CH240-131O21, WORKING DRAFT SEQU... 32 3.3 2
(AC182878) Bos taurus clone CH240-451H17, WORKING DRAFT SEQU... 32 3.3 2
(AC221770) Bos taurus clone CH240-385L20, WORKING DRAFT SEQU... 32 3.3 2
(AC221220) Bos taurus clone CH240-400A15, WORKING DRAFT SEQU... 32 3.3 2
(AC164855) Bos taurus clone CH240-151N23, WORKING DRAFT SEQU... 32 3.3 2
(AC175434) Bos taurus clone CH240-435H21, WORKING DRAFT SEQU... 32 3.3 2
(AC223649) Bos taurus clone CH240-462M8, WORKING DRAFT SEQUE... 32 3.3 2
(AC230240) Bos taurus clone CH240-515N16, WORKING DRAFT SEQU... 32 3.3 2
(AC171118) Bos taurus clone CH240-242A1, WORKING DRAFT SEQUE... 32 3.3 2
(AC165005) Bos taurus clone CH240-161C11, WORKING DRAFT SEQU... 32 3.3 2
(AC219456) Bos taurus clone CH240-341D13, WORKING DRAFT SEQU... 32 3.3 2
(AC220183) Bos taurus clone CH240-365G24, WORKING DRAFT SEQU... 32 3.3 2
(AC122285) Mus musculus BAC clone RP23-251G4 from 14, comple... 32 3.3 2
(AC173153) Bos taurus clone CH240-527M7, WORKING DRAFT SEQUE... 32 3.3 2
(AC182943) Bos taurus clone CH240-277J22, WORKING DRAFT SEQU... 32 3.3 2
(AC232447) Brassica rapa subsp. pekinensis clone KBrB007I08,... 34 3.3 2
(AC169752) Bos taurus clone CH240-217M4, WORKING DRAFT SEQUE... 32 3.3 2
(AC171615) Bos taurus clone CH240-268L17, WORKING DRAFT SEQU... 32 3.3 2
(AC152631) Bos taurus clone CH240-10J1, WORKING DRAFT SEQUEN... 32 3.3 2
(CW409936) fsbb001f104h14k0 Sorghum methylation filtered lib... 42 3.3 2
(AC233100) Medicago truncatula clone mth2-132a8, WORKING DRA... 36 3.4 7
(AP000182) Homo sapiens genomic DNA, chromosome 21q22.1, D21... 32 3.4 6
(AP000106) Homo sapiens genomic DNA of 21q22.1, GART and AML... 32 3.4 6
(AP000038) Homo sapiens genomic DNA, chromosome 21q22.1, seg... 32 3.4 6
(CT573237) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 3.4 5
(AC153210) Bos taurus clone CH240-28N7, WORKING DRAFT SEQUEN... 32 3.4 2
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 3.4 10
(AC024716) Homo sapiens chromosome X clone RP11-203F15, WORK... 34 3.4 7
(CX142636) 1282235 NCCCWA 03RT Oncorhynchus mykiss cDNA clon... 34 3.5 3
(AC012221) Homo sapiens chromosome 3 clone RP11-81P15 map 3,... 38 3.5 6
(EJ142511) 1092343663778 Global-Ocean-Sampling_GS-27-01-01-1... 32 3.5 3
(GC701688) Sequence 16933 from patent US 6812339. 32 3.5 6
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 36 3.5 9
(AC094404) Rattus norvegicus clone CH230-3M6, *** SEQUENCING... 34 3.5 6
(EI311435) GM_WBc0042D23.f GM_WBc Glycine max genomic clone ... 42 3.5 2
(AF288092) Naegleria gruberi mitochondrial DNA, complete gen... 36 3.6 5
(AC218700) Bos taurus clone CH240-297C11, WORKING DRAFT SEQU... 44 3.6 5
(AC185547) Microcebus murinus clone CH257-312F11, WORKING DR... 32 3.6 8
(AC167623) Bos taurus clone CH240-151I8, *** SEQUENCING IN P... 32 3.6 7
(EY360852) CAWZ740.fwd CAWZ Helobdella robusta Primary Late ... 38 3.6 2
(FH035420) CHO_OF3277xf17r1.ab1 CHO_OF3 Nicotiana tabacum ge... 36 3.7 2
(AC160839) Medicago truncatula clone mth2-1o5, WORKING DRAFT... 32 3.7 6
(AC233747) Mus musculus chromosome Y clone RP24-325I21, WORK... 38 3.7 4
(EK382076) 1095469465621 Global-Ocean-Sampling_GS-31-01-01-1... 40 3.7 2
(AC102274) Mus musculus chromosome 3, clone RP24-286L19, com... 36 3.7 6
(AX345300) Sequence 371 from Patent WO0200928. 38 3.7 3
(AC159146) Medicago truncatula chromosome 7 BAC clone mth2-7... 36 3.7 5
(FG283242) 1108457714276 New World Screwworm Egg 9261 ESTs C... 40 3.8 2
(AM471960) Vitis vinifera contig VV78X029428.17, whole genom... 34 3.8 4
(AP010894) Solanum lycopersicum DNA, chromosome 8, clone: C0... 40 3.8 4
(EG959208) AU_Ich_008D_B07 Whole organism normalized cDNA li... 34 3.8 3
(EJ751393) 1092963038512 Global-Ocean-Sampling_GS-30-02-01-1... 40 3.8 2
(AM448784) Vitis vinifera contig VV78X077229.13, whole genom... 40 3.8 5
(FG299281) 1108793334783 New World Screwworm Larvae 9387 EST... 40 3.8 2
(AC232398) Brassica rapa subsp. pekinensis clone KBrH009C03,... 30 3.8 9
(AC216951) Solanum tuberosum chromosome 6 clone RHPOTKEY127J... 40 3.8 4
(AC196760) Citrus sinensis clone CSRBBa-041J17, WORKING DRAF... 38 3.8 5
(AC175685) Medicago truncatula chromosome 2 BAC clone mte1-5... 30 3.8 8
(EG959178) AU_Ich_008C_H01 Whole organism normalized cDNA li... 34 3.8 3
(FG298782) 1108793320683 New World Screwworm Larvae 9387 EST... 40 3.8 2
(AC233289) Homo sapiens BAC clone RP11-395M1 from chromosome... 36 3.9 4
(AC215625) Populus trichocarpa clone POP011-A24, complete se... 38 3.9 5
(FG298363) 1108793311332 New World Screwworm Larvae 9387 EST... 40 3.9 2
(AE017263) Mesoplasma florum L1 complete genome. 34 3.9 11
(FG290177) 1108793315292 New World Screwworm Egg 9261 ESTs C... 40 3.9 2
(AL391139) Human DNA sequence from clone RP11-353K22 on chro... 38 3.9 4
(AC161845) Bos taurus clone CH240-100I20, WORKING DRAFT SEQU... 38 4.0 5
(FG298436) 1108793311423 New World Screwworm Larvae 9387 EST... 40 4.0 2
(FG292848) 1108770644215 New World Screwworm Larvae 9387 EST... 40 4.0 2
(AM458860) Vitis vinifera contig VV78X091906.6, whole genome... 30 4.0 5
(BC048005) Mus musculus component of oligomeric golgi comple... 32 4.0 2
(BC038030) Mus musculus component of oligomeric golgi comple... 32 4.0 2
(FG293365) 1108770669990 New World Screwworm Larvae 9387 EST... 40 4.0 2
(FG298780) 1108793320681 New World Screwworm Larvae 9387 EST... 40 4.0 2
(FG298194) 1108793302922 New World Screwworm Larvae 9387 EST... 40 4.1 2
(FG283411) 1108770613866 New World Screwworm Egg 9261 ESTs C... 40 4.1 2
(FG289831) 1108793307998 New World Screwworm Egg 9261 ESTs C... 40 4.1 2
(CT512267) A BAC library has been constructed from cultivar ... 42 4.1 2
(AC208108) Pongo abelii BAC clone CH276-446E3 from chromosom... 38 4.2 5
(FG287786) 1108793253683 New World Screwworm Egg 9261 ESTs C... 40 4.2 2
(FG293349) 1108770669964 New World Screwworm Larvae 9387 EST... 40 4.2 2
(FG297421) 1108793286812 New World Screwworm Larvae 9387 EST... 40 4.2 2
(AK088139) Mus musculus 2 days neonate thymus thymic cells c... 32 4.2 2

>(C84211) Dictyostelium discoideum slug cDNA, clone SSB307.
Length = 463

Score = 585 bits (295), Expect(2) = 0.0
Identities = 298/298 (100%)
Strand = Plus / Plus


Query: 259 aaattgtaaaagaattcaatagagatgatgggtattacatcaattcatttacaaaattta 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aaattgtaaaagaattcaatagagatgatgggtattacatcaattcatttacaaaattta 122


Query: 319 aatttaaatttggaaaagttttaatattcagtatgttatatttctttgttcgttttatta 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 aatttaaatttggaaaagttttaatattcagtatgttatatttctttgttcgttttatta 182


Query: 379 ttacaataacattaattttcacaccaatcgaacaaacacatggtatttttgaaattattt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttacaataacattaattttcacaccaatcgaacaaacacatggtatttttgaaattattt 242


Query: 439 tntatagtttattcgaaattcttccaatatcactagcaatatggataatagacaaacttg 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tntatagtttattcgaaattcttccaatatcactagcaatatggataatagacaaacttg 302


Query: 499 aaaatgaagcaattgaattaaaagattcaaatgaagaaccagataaattctctcactt 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaaatgaagcaattgaattaaaagattcaaatgaagaaccagataaattctctcactt 360

Score = 109 bits (55), Expect(2) = 0.0
Identities = 55/55 (100%)
Strand = Plus / Plus


Query: 586 tactcacacacatatggaatttaaaatgctttacttacaattttaataaataaat 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tactcacacacatatggaatttaaaatgctttacttacaattttaataaataaat 444

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 972,445,486
Number of extensions: 77501937
Number of successful extensions: 7865556
Number of sequences better than 10.0: 1008
Length of query: 658
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 634
Effective length of database: 99,340,224,878
Effective search space: 62981702572652
Effective search space used: 62981702572652
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.17
Homology vs Protein
Query= Contig-U01541-1 (Contig-U01541-1Q) /CSM_Contig/Contig-U01541-1Q.Seq.d
(658 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

FJ416603_1(FJ416603|pid:none) Leishmania donovani isolate MHOM/S... 33 5.6

>FJ416603_1(FJ416603|pid:none) Leishmania donovani isolate
MHOM/SD/62/1S-Cl2D maxicircle, partial sequence;
kinetoplast.
Length = 478

Score = 33.5 bits (75), Expect = 5.6
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +3

Query: 132 KNYIFF*YWGFYLEFYLFXXXXSVIYLFFGVLSFFIGDMSLFKIVKEFNRDDGYYINSFT 311
KNYIF+ Y F+L + L ++Y FF V + F + ++ Y++ +F
Sbjct: 314 KNYIFYMYLNFHLIYSLSLIVLIILYYFFIVYNMF-----------DIKYNENYFLINFI 362

Query: 312 KFKFKFGKVLI 344
F F F +LI
Sbjct: 363 FFSF-FNNLLI 372

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 809,506,453
Number of extensions: 13478227
Number of successful extensions: 34700
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34605
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 95
Effective length of database: 649,847,548
Effective search space: 61735517060
Effective search space used: 61735517060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.79 gvh: 0.66 alm: 0.20 top: 0.87 tms: 0.33 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

36.0 %: endoplasmic reticulum
24.0 %: plasma membrane
12.0 %: mitochondrial
12.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: nuclear
4.0 %: cytoplasmic

>> prediction for Contig-U01541-1 is end

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0