Contig-U01585-1
Contig ID Contig-U01585-1
Contig update 2001. 8.29
Contig sequence
>Contig-U01585-1 (Contig-U01585-1Q) /CSM_Contig/Contig-U01585-1Q.Seq.d
GAATCATATGGACATCGTAATAATAATAAAGGTGGTGATTCAAAGATTTT
ATTAAAAGATGTTCAAGTTTTAACATTAAGATCAGGTGAAATGACAAAAG
CCCGAAGATCTTCACCAATCCAACAAATGGAATGTATTGGTGGAACAGCA
ACAAAGGAATTAGAACTTTATCCAAAAACAATACAATGTTATAATATGGG
ATCAAATGGTGTTGATGTTCAATGGAAATGTGAAGCAACATTAGATTCAA
CAGTTAGATTAGGTACTATCGATGTAAGTTGTGAAGGTTATTCTTATCCA
GAAGATCCTTATATCACTGCTGATAGTTGTGGTGTATTCTATCAATTAGA
ATATAC----------TTTTGTATTGCATTTATAGGTTTAATTTTATATG
CAGTATTTAATTGGTGTGGTTCACCTCAAGGTGATGATGATAGTAATACT
GCTCAAAATAATACTGCAACTGATAATAATTATCCAGGTGGTTTCCCAGG
TAATAATAATAATAATAACAATAATAATAACAATAGTAATAATAACAACT
ATGGTGGAAATTATCAAGGTTATCCAAATTTAAATAACAATAATAATGCA
GGTGGTTGTGCTCAACCAAATAATGGCGGTGGTGGTGGTGGTGGTTGGTT
TCAACCAGGTTTATGGACAGGTTTAGCTTCTGGTTATCTTTTTGGAAGAA
TTCATTCAAATAGGAATCATCATCATTATTATAATCCATCACCTTCATAT
AATAGACCTAGAAGTTCTTATAGTAGTGGTAGTAGTGGTGGTAGTGGTAT
ATCTTCAAGTTCTTCCTCTTATTCTGGTACTTCAAGAAGATAATTAAATT
ATAATAAATAAATAAATAAACCTTTTTGTACATTTAAAAAAAAAAAAAAA
A

Gap gap included
Contig length 891
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 2
Number of EST 3
Link to clone list U01585
List of clone(s)

est1=SSC158F,1,357
est2=SSG637Z,358,882
est3=SSC158Z,366,893
Translated Amino Acid sequence
ESYGHRNNNKGGDSKILLKDVQVLTLRSGEMTKARRSSPIQQMECIGGTATKELELYPKT
IQCYNMGSNGVDVQWKCEATLDSTVRLGTIDVSCEGYSYPEDPYITADSCGVFYQLEY--
-

---FCIAFIGLILYAVFNWCGSPQGDDDSNTAQNNTATDNNYPGGFPGNNNNNNNNNNNS
NNNNYGGNYQGYPNLNNNNNAGGCAQPNNGGGGGGGWFQPGLWTGLASGYLFGRIHSNRN
HHHYYNPSPSYNRPRSSYSSGSSGGSGISSSSSSYSGTSRR*lnynk*inkpfctfkkkk
k


Translated Amino Acid sequence (All Frames)
Frame A:
ESYGHRNNNKGGDSKILLKDVQVLTLRSGEMTKARRSSPIQQMECIGGTATKELELYPKT
IQCYNMGSNGVDVQWKCEATLDSTVRLGTIDVSCEGYSYPEDPYITADSCGVFYQLEY--
-

---FCIAFIGLILYAVFNWCGSPQGDDDSNTAQNNTATDNNYPGGFPGNNNNNNNNNNNS
NNNNYGGNYQGYPNLNNNNNAGGCAQPNNGGGGGGGWFQPGLWTGLASGYLFGRIHSNRN
HHHYYNPSPSYNRPRSSYSSGSSGGSGISSSSSSYSGTSRR*lnynk*inkpfctfkkkk
k

Frame B:
nhmdiviiikvviqrfy*kmfkf*h*dqvk*qkpedlhqsnkwnvlveqqqrn*nfiqkq
ynviiwdqmvlmfngnvkqh*iqqld*vlsm*vvkviliqkilisllivvvysin*ni--
-

---fvlhl*v*fymqyligvvhlkvmmivillkiilqliiiiqvvsqviiiiitiiitiv
iittmveiikviqi*itiimqvvvlnqimavvvvvvgfnqvygqv*llvifleefiqigi
iiiiiihhlhiidlevlivvvvvvvvvylqvlplilvlqedn*iiink*inlfvhlkkkk
k

Frame C:
iiwts****rw*fkdfikrcssfnikir*ndkspkiftnptngmywwnsnkgirtlsknn
tml*ygikwc*csmem*snirfns*iryyrckl*rlflsrrslyhc**lwcilsiriy--
-

---lyciyrfnficsi*lvwftsr*****ycsk*ycn***lsrwfpr******q***q**
**qlwwklsrlskfk*q**crwlcstk*wrwwwwwlvstrfmdrfsfwlsfwknsfk*es
ssll*sitfi**t*kfl**w**ww*wyifkffllfwyfkkiikl**ink*tflyi*kkkk

own update 2004. 6. 7
Homology vs CSM-cDNA
Query= Contig-U01585-1 (Contig-U01585-1Q)
/CSM_Contig/Contig-U01585-1Q.Seq.d
(901 letters)

Database: CSM
8361 sequences; 7,895,291 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U01585-1 (Contig-U01585-1Q) /CSM_Contig/Conti... 930 0.0
Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U09072-1 (Contig-U09072-1Q) /CSM_Contig/Conti... 50 6e-06
Contig-U11948-1 (Contig-U11948-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U09897-1 (Contig-U09897-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U09459-1 (Contig-U09459-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U06711-1 (Contig-U06711-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U03026-1 (Contig-U03026-1Q) /CSM_Contig/Conti... 46 9e-05
Contig-U14685-1 (Contig-U14685-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U14439-1 (Contig-U14439-1Q) /CSM_Contig/Conti... 44 4e-04

>Contig-U01585-1 (Contig-U01585-1Q) /CSM_Contig/Contig-U01585-1Q.Seq.d
Length = 901

Score = 930 bits (469), Expect = 0.0
Identities = 499/499 (100%)
Strand = Plus / Plus


Query: 1 gaatcatatggacatcgtaataataataaaggtggtgattcaaagattttattaaaagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaatcatatggacatcgtaataataataaaggtggtgattcaaagattttattaaaagat 60


Query: 61 gttcaagttttaacattaagatcaggtgaaatgacaaaagcccgaagatcttcaccaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttcaagttttaacattaagatcaggtgaaatgacaaaagcccgaagatcttcaccaatc 120


Query: 121 caacaaatggaatgtattggtggaacagcaacaaaggaattagaactttatccaaaaaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caacaaatggaatgtattggtggaacagcaacaaaggaattagaactttatccaaaaaca 180


Query: 181 atacaatgttataatatgggatcaaatggtgttgatgttcaatggaaatgtgaagcaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atacaatgttataatatgggatcaaatggtgttgatgttcaatggaaatgtgaagcaaca 240


Query: 241 ttagattcaacagttagattaggtactatcgatgtaagttgtgaaggttattcttatcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttagattcaacagttagattaggtactatcgatgtaagttgtgaaggttattcttatcca 300


Query: 301 gaagatccttatatcactgctgatagttgtggtgtattctatcaattagaatatacnnnn 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaagatccttatatcactgctgatagttgtggtgtattctatcaattagaatatacnnnn 360


Query: 361 nnnnnnttttgtattgcatttataggtttaattttatatgcagtatttaattggtgtggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 nnnnnnttttgtattgcatttataggtttaattttatatgcagtatttaattggtgtggt 420


Query: 421 tcacctcaaggtgatgatgatagtaatactgctcaaaataatactgcaactgataataat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcacctcaaggtgatgatgatagtaatactgctcaaaataatactgcaactgataataat 480


Query: 481 tatccaggtggtttcccag 499
|||||||||||||||||||
Sbjct: 481 tatccaggtggtttcccag 499


Score = 468 bits (236), Expect = e-132
Identities = 236/236 (100%)
Strand = Plus / Plus


Query: 650 ttcaaccaggtttatggacaggtttagcttctggttatctttttggaagaattcattcaa 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttcaaccaggtttatggacaggtttagcttctggttatctttttggaagaattcattcaa 709


Query: 710 ataggaatcatcatcattattataatccatcaccttcatataatagacctagaagttctt 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ataggaatcatcatcattattataatccatcaccttcatataatagacctagaagttctt 769


Query: 770 atagtagtggtagtagtggtggtagtggtatatcttcaagttcttcctcttattctggta 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 atagtagtggtagtagtggtggtagtggtatatcttcaagttcttcctcttattctggta 829


Query: 830 cttcaagaagataattaaattataataaataaataaataaacctttttgtacattt 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 cttcaagaagataattaaattataataaataaataaataaacctttttgtacattt 885


Score = 163 bits (82), Expect = 6e-40
Identities = 82/82 (100%)
Strand = Plus / Plus


Query: 546 caactatggtggaaattatcaaggttatccaaatttaaataacaataataatgcaggtgg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 caactatggtggaaattatcaaggttatccaaatttaaataacaataataatgcaggtgg 605


Query: 606 ttgtgctcaaccaaataatggc 627
||||||||||||||||||||||
Sbjct: 606 ttgtgctcaaccaaataatggc 627


Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 583 aataacaataataat 597
|||||||||||||||
Sbjct: 514 aataacaataataat 528


>Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Contig-U11408-1Q.Seq.d
Length = 2056

Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus


Query: 771 tagtagtggtagtagtggtggtagtggta 799
|||||||||||||||| ||||||||||||
Sbjct: 1223 tagtagtggtagtagtagtggtagtggta 1195


>Contig-U09072-1 (Contig-U09072-1Q) /CSM_Contig/Contig-U09072-1Q.Seq.d
Length = 822

Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus


Query: 771 tagtagtggtagtagtggtggtagtggta 799
||||||||||||| |||||||||||||||
Sbjct: 385 tagtagtggtagtggtggtggtagtggta 413


Database: CSM
Posted date: Jun 7, 2004 8:33 AM
Number of letters in database: 7,895,291
Number of sequences in database: 8361

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 46,714
Number of Sequences: 8361
Number of extensions: 46714
Number of successful extensions: 9156
Number of sequences better than 10.0: 1559
length of query: 901
length of database: 7,895,291
effective HSP length: 16
effective length of query: 885
effective length of database: 7,761,515
effective search space: 6868940775
effective search space used: 6868940775
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5. 2
Homology vs DNA
Query= Contig-U01585-1 (Contig-U01585-1Q) /CSM_Contig/Contig-U01585-1Q.Seq.d
(901 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C89931) Dictyostelium discoideum slug cDNA, clone SSG637. 468 0.0 3
(C84872) Dictyostelium discoideum slug cDNA, clone SSC158. 460 0.0 3
(AU071635) Dictyostelium discoideum slug cDNA, clone SSC158. 476 e-130 1
(AY082376) Dictyostelium discoideum ABC transporter ABCC.14 ... 46 2e-07 4
(AY232269) Dictyostelium discoideum putative protein Roco7 (... 46 2e-07 5
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 42 2e-07 10
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 52 3e-07 9
(U20824) Equid herpesvirus 2, complete genome. 50 5e-06 3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 36 9e-06 10
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 46 2e-05 6
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 44 3e-05 10
(AC116922) Dictyostelium discoideum chromosome 2 map 6061442... 40 5e-05 7
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 44 8e-05 6
(AC177989) Strongylocentrotus purpuratus clone R3-3051J10, W... 40 2e-04 7
(CE097201) tigr-gss-dog-17000371076701 Dog Library Canis lup... 60 2e-04 1
(AC184230) Strongylocentrotus purpuratus clone R3-3056L22, W... 48 2e-04 8
(FC651880) CAXW12171.fwd CAXW Lottia gigantea from female go... 44 3e-04 3
(FC759983) CBBN11790.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar... 44 3e-04 3
(FC570835) CAWF9225.fwd CAWF Lottia gigantea from mantle (H)... 44 4e-04 3
(AY484460) Dictyostelium discoideum kinesin family member 3 ... 58 5e-04 3
(BX321884) Zebrafish DNA sequence from clone DKEYP-29A10 in ... 48 5e-04 4
(AC005140) Plasmodium falciparum chromosome 12 clone PFYACB8... 42 6e-04 6
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 44 6e-04 6
(AY162212) Dictyostelium discoideum kinesin 1 gene, partial ... 58 6e-04 1
(AC179946) Strongylocentrotus purpuratus clone R3-21K21, WOR... 58 6e-04 1
(AC179908) Strongylocentrotus purpuratus clone R3-1003I5, WO... 58 6e-04 1
(AC178657) Strongylocentrotus purpuratus clone R3-11O5, WORK... 58 6e-04 1
(AC177308) Strongylocentrotus purpuratus clone R3-1033B15, W... 58 6e-04 1
(AC176814) Strongylocentrotus purpuratus clone R3-3111B06, W... 58 6e-04 1
(GE168372) CAHP9386.fwd CAHP Emiliania huxleyi CCMP1516 day ... 58 6e-04 1
(EY334001) CAWY6064.rev CAWY Helobdella robusta Subtracted E... 58 6e-04 1
(AC176103) Strongylocentrotus purpuratus clone R3-24F1, WORK... 42 7e-04 8
(AC201129) Strongylocentrotus purpuratus clone R3-14A21, WOR... 42 7e-04 6
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 40 8e-04 11
(AC168697) Strongylocentrotus purpuratus clone R3-3014E4, WO... 50 9e-04 4
(AL035476) Plasmodium falciparum MAL4P3. 40 0.001 7
(AC157563) Mus musculus chromosome 7, clone RP23-414I24, com... 50 0.001 3
(AC115606) Dictyostelium discoideum chromosome 2 map 159760-... 44 0.001 5
(AC179059) Strongylocentrotus purpuratus clone R3-4005J23, W... 44 0.002 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 44 0.002 6
(AC180862) Strongylocentrotus purpuratus clone R3-3069H13, W... 40 0.002 2
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 46 0.002 11
(AC180837) Strongylocentrotus purpuratus clone R3-3069N16, W... 38 0.002 6
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 38 0.002 10
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 42 0.002 7
(BM881759) rb13f10.y1 Meloidogyne incognita egg pAMP1 Bird M... 36 0.002 3
(AC154842) Mus musculus BAC clone RP23-55C11 from chromosome... 44 0.002 5
(AC131513) Strongylocentrotus purpuratus clone Sp91A10, *** ... 48 0.002 6
(AC115683) Dictyostelium discoideum chromosome 2 map complem... 42 0.002 4
(CR361554) Zebrafish DNA sequence from clone CH211-222L15 in... 56 0.002 1
(AC157515) Mus musculus BAC clone RP24-226N22 from chromosom... 56 0.002 1
(AC138767) Mus musculus chromosome 12, clone RP23-454K24, co... 56 0.002 1
(AC131992) Mus musculus chromosome 1, clone RP24-190B16, com... 56 0.002 1
(AC117826) Mus musculus chromosome 1, clone RP24-81K19, comp... 56 0.002 1
(FM992688) Candida dubliniensis CD36 chromosome 1, complete ... 56 0.002 1
(AC128240) Rattus norvegicus clone CH230-510B7, *** SEQUENCI... 56 0.002 1
(AC110987) Rattus norvegicus clone CH230-190O18, *** SEQUENC... 56 0.002 1
(AC105547) Rattus norvegicus clone CH230-201N9, WORKING DRAF... 56 0.002 1
(AC096453) Rattus norvegicus clone CH230-41P1, WORKING DRAFT... 56 0.002 1
(AC095213) Rattus norvegicus clone CH230-9E9, *** SEQUENCING... 56 0.002 1
(CT030132) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 56 0.002 1
(BH532167) BOHAM75TR BOHA Brassica oleracea genomic clone BO... 56 0.002 1
(BH435820) BOGVE21TF BOGV Brassica oleracea genomic clone BO... 56 0.002 1
(AZ937225) 2M0195O13F Mouse 10kb plasmid UUGC2M library Mus ... 56 0.002 1
(AZ357513) 1M0099O02F Mouse 10kb plasmid UUGC1M library Mus ... 56 0.002 1
(CC954890) BOIDZ41TR BO_1.4_1.6_KB_nuc Brassica oleracea gen... 56 0.002 1
(BZ026177) oei54h01.g1 B.oleracea002 Brassica oleracea genom... 56 0.002 1
(DW273733) UI-S-GS1-act-d-13-0-UI.s1 UI-S-GS1 Euprymna scolo... 56 0.002 1
(CK528328) rswfa0_006390.y1 swf Bombyx mori cDNA, mRNA seque... 56 0.002 1
(AC119711) Rattus norvegicus clone CH230-254C6, *** SEQUENCI... 44 0.002 2
(AL591476) Zebrafish DNA sequence from clone BUSM1-263J20 in... 44 0.003 5
(CU656037) Zebrafish DNA sequence from clone ZFOS-1179H2. 46 0.003 4
(AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 38 0.004 8
(EX849445) CBNC7929.rev CBNC Phycomyces blakesleeanus NRRL15... 38 0.004 3
(CU207244) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 0.004 6
(AC073800) Mus musculus clone RP23-440M10, WORKING DRAFT SEQ... 50 0.004 3
(AC180287) Strongylocentrotus purpuratus clone R3-3121L15, W... 44 0.005 5
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124... 44 0.006 8
(BJ377222) Dictyostelium discoideum cDNA clone:ddc22f01, 3' ... 50 0.006 2
(AF246689) Dictyostelium discoideum ABC transporter mdrA1 (M... 42 0.006 4
(AC184607) Strongylocentrotus purpuratus clone R3-3087A2, WO... 50 0.006 4
(AC108798) Mus musculus chromosome 5, clone RP23-419N6, comp... 38 0.007 2
(AC102075) Mus musculus chromosome 5, clone RP23-389F20, com... 38 0.007 2
(AC109224) Mus musculus chromosome 5, clone RP23-150I2, comp... 38 0.007 2
(AC121284) Mus musculus chromosome 5 clone RP23-394P1 map 5,... 38 0.007 2
(AC179070) Strongylocentrotus purpuratus clone R3-4009E11, W... 42 0.007 5
(CU062479) Zebrafish DNA sequence from clone CH211-120F14 in... 52 0.007 7
(AC104324) Mus musculus strain C57BL/6J chromosome 6 clone r... 44 0.007 2
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ... 42 0.008 6
(DX330830) OR_ABa0253K03.f OR_ABa Oryza ridleyi genomic clon... 52 0.008 2
(BJ345865) Dictyostelium discoideum cDNA clone:dda29f12, 3' ... 46 0.008 2
(BX243356) Danio rerio genomic clone DKEY-230G20, genomic su... 46 0.009 2
(AC178500) Strongylocentrotus purpuratus clone R3-3032L5, WO... 42 0.009 4
(CR382399) Plasmodium falciparum chromosome 6, complete sequ... 50 0.009 6
(CR450699) Zebrafish DNA sequence from clone DKEYP-120A11 in... 54 0.010 1
(AM475763) Vitis vinifera contig VV78X133819.3, whole genome... 54 0.010 1
(AM430641) Vitis vinifera contig VV78X241117.2, whole genome... 54 0.010 1
(AC187165) Glycine max clone gmw2-91b16, complete sequence. 54 0.010 1
(AL592444) Human DNA sequence from clone RP11-178P20 on chro... 54 0.010 1
(AL121935) Human DNA sequence from clone RP11-517H2 on chrom... 54 0.010 1
(AC136090) Rattus norvegicus clone CH230-480D12, *** SEQUENC... 54 0.010 1
(AC106106) Rattus norvegicus clone CH230-143I7, WORKING DRAF... 54 0.010 1
(AC179944) Strongylocentrotus purpuratus clone R3-3032O19, W... 54 0.010 1
(AC177515) Strongylocentrotus purpuratus clone R3-9L23, WORK... 54 0.010 1
(AC176195) Strongylocentrotus purpuratus clone R3-3066D7, WO... 54 0.010 1
(AC168394) Strongylocentrotus purpuratus clone R3-4002N21, W... 54 0.010 1
(CR020317) Forward strand read from insert in 3'HPRT inserti... 54 0.010 1
(DW271583) UI-S-GS1-ack-p-21-0-UI.s1 UI-S-GS1 Euprymna scolo... 54 0.010 1
(CT715716) Danio rerio EST, clone ZF_mu_243d14 3'. 54 0.010 1
(CT715715) Danio rerio EST, clone ZF_mu_243d14 5'. 54 0.010 1
(BB996657) Ilyoplax pusilla mRNA, clone: ARN01A01NGRM0003_F0... 54 0.010 1
(GE817509) EST_scau_evk_969928 scauevk mixed_tissue Sebastes... 54 0.010 1
(GE798818) EST_scau_evk_889236 scauevk mixed_tissue Sebastes... 54 0.010 1
(FK742846) av02096m08r1.1 Symbiotic sea anemone (Anemonia vi... 54 0.010 1
(AY293825) Dictyostelium discoideum transposon cluster; tRNA... 42 0.010 5
(FP102921) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 50 0.010 5
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 42 0.010 8
(AF026469) Mus musculus ubiquitin-specific protease (Unp) ge... 44 0.011 5
(AF482381) Dictyostelium discoideum ABC transporter AbcG2 (a... 42 0.011 4
(AC168420) Strongylocentrotus purpuratus clone R3-39P5, WORK... 42 0.012 3
(CU861474) Zebrafish DNA sequence from clone CH73-129N15 in ... 50 0.012 4
(DE185122) Bombyx mori genomic DNA, Fosmid clone:RO0340-D23_F. 36 0.013 4
(AC179766) Strongylocentrotus purpuratus clone R3-1016L19, W... 40 0.013 6
(AC179570) Strongylocentrotus purpuratus clone R3-8F5, WORKI... 42 0.014 7
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 40 0.014 9
(AC181195) Strongylocentrotus purpuratus clone R3-12D21, WOR... 42 0.014 7
(AF295013) Homo sapiens chromosome 8 clone CTA-293F4/2, WORK... 42 0.016 5
(AC160216) Atelerix albiventris clone LB4-351P23, WORKING DR... 46 0.017 5
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 44 0.017 9
(AC177073) Strongylocentrotus purpuratus clone R3-4004K17, W... 48 0.017 4
(AC138551) Danio rerio strain Tue clone CH211-31C22, WORKING... 52 0.017 4
(AF077591) Penaeus monodon clone TUZX4-6:74 microsatellite s... 40 0.017 3
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 40 0.017 7
(CQ593429) Sequence 21187 from Patent WO0171042. 42 0.018 2
(BX914195) Zebrafish DNA sequence from clone CH211-170L6 in ... 40 0.019 7
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 50 0.019 7
(AC176804) Strongylocentrotus purpuratus clone R3-3109C4, WO... 50 0.019 5
(BX510987) Zebrafish DNA sequence from clone DKEY-43H1 in li... 38 0.020 7
(EY329749) CAWY2948.fwd CAWY Helobdella robusta Subtracted E... 38 0.020 3
(AC096261) Rattus norvegicus clone CH230-81A12, *** SEQUENCI... 40 0.024 5
(AC110538) Mus musculus chromosome 5, clone RP23-71L23, comp... 36 0.024 2
(AC160551) Mus musculus chromosome 5, clone RP23-296C20, com... 36 0.024 2
(CR556714) Zebrafish DNA sequence from clone DKEY-29P13 in l... 40 0.025 5
(BV236456) S234P688RF4.T0 EnglishShepherd Canis familiaris S... 50 0.025 2
(AC079486) Mus musculus clone RP23-179D24, WORKING DRAFT SEQ... 50 0.025 2
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 40 0.026 5
(FE800485) CCAG23252.b1 CCAG Petrolisthes cinctipes heart, g... 32 0.026 4
(AL844509) Plasmodium falciparum chromosome 13. 48 0.026 3
(AC116924) Dictyostelium discoideum chromosome 2 map 6357117... 44 0.026 5
(AM476406) Vitis vinifera contig VV78X034243.8, whole genome... 42 0.027 2
(CU799634) A BAC library has been constructed from PN40024 g... 40 0.027 3
(AC179842) Strongylocentrotus purpuratus clone R3-1008A14, W... 40 0.027 4
(AC179005) Strongylocentrotus purpuratus clone R3-32E21, WOR... 48 0.028 3
(AC201679) Strongylocentrotus purpuratus clone R3-4001E16, W... 48 0.028 6
(Z98551) Plasmodium falciparum MAL3P6. 40 0.029 8
(BB639585) Mus musculus 7 days neonate cerebellum cDNA, RIKE... 46 0.029 2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 40 0.031 9
(AC136677) Rattus norvegicus clone CH230-5P17, WORKING DRAFT... 44 0.032 2
(AC154775) Mus musculus BAC clone RP23-100F7 from chromosome... 46 0.032 5
(AC176990) Strongylocentrotus purpuratus clone R3-1103B18, W... 44 0.032 6
(AM427897) Vitis vinifera contig VV78X097684.10, whole genom... 52 0.032 2
(AC181043) Strongylocentrotus purpuratus clone R3-3050G1, WO... 40 0.034 5
(AC113102) Mus musculus chromosome 15, clone RP23-320O9, com... 44 0.034 4
(AC127461) Danio rerio strain Tue clone CH211-134D4, WORKING... 40 0.035 6
(AQ940143) Sheared DNA-43E18.TF Sheared DNA Trypanosoma bruc... 36 0.036 3
(AM473620) Vitis vinifera contig VV78X011579.15, whole genom... 38 0.038 4
(CT737187) Zebrafish DNA sequence from clone DKEY-276D23. 52 0.038 1
(CT027589) Zebrafish DNA sequence from clone CH211-71M22 in ... 52 0.038 1
(CT009745) Zebrafish DNA sequence from clone DKEY-266M15 in ... 52 0.038 1
(CR855313) Zebrafish DNA sequence from clone CH211-198C17 in... 52 0.038 1
(CR522883) Zebrafish DNA sequence from clone CH211-120K24 in... 52 0.038 1
(BX004776) Zebrafish DNA sequence from clone CH211-137A8 in ... 52 0.038 1
(G90151) S208P6506RH6.T0 129S1/SvImJ Mus musculus STS genomi... 52 0.038 1
(BV444480) S237P6295FE12.T0 PortugueseWaterDog Canis familia... 52 0.038 1
(AP001294) Mus musculus genomic DNA, chromosome 7, clone:B385. 52 0.038 1
(AL844863) Mouse DNA sequence from clone RP23-273C23 on chro... 52 0.038 1
(AJ276505) Mus musculus genomic fragment, 281000 bp, chromos... 52 0.038 1
(AE014180) Mus musculus piebald deletion region section 8 of... 52 0.038 1
(AC166749) Mus musculus chromosome 1, clone RP23-463A15, com... 52 0.038 1
(AC141878) Mus musculus BAC clone RP24-257N14 from 14, compl... 52 0.038 1
(AC137970) Mus musculus chromosome 3, clone RP23-438E13, com... 52 0.038 1
(AC135633) Mus musculus BAC clone RP24-84O13 from chromosome... 52 0.038 1
(AC125443) Mus musculus chromosome 1, clone RP24-493N12, com... 52 0.038 1
(AC121964) Mus musculus chromosome 19 clone RP24-257N11, com... 52 0.038 1
(AC113125) Mus musculus chromosome 14, clone RP23-350B18, co... 52 0.038 1
(AC108334) Rattus norvegicus 4 BAC CH230-151B7 (Children's H... 52 0.038 1
(AC102745) Mus musculus chromosome 17, clone RP24-371L2, com... 52 0.038 1
(AC099706) Mus musculus, clone RP23-267P24, complete sequence. 52 0.038 1
(AC068006) Mus musculus chromosome 7, clone RP23-6I17, compl... 52 0.038 1
(AC023248) Mus musculus chromosome 7, clone RP23-124B2, comp... 52 0.038 1
(CR954186) Medicago truncatula chromosome 5 clone mth2-117e1... 52 0.038 1
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 52 0.038 1
(AL772208) Human DNA sequence from clone RP6-29F5 on chromos... 52 0.038 1
(AC010530) Homo sapiens chromosome 16 clone RP11-167P11, com... 52 0.038 1
(AC118233) Mus musculus clone RP23-462L17, WORKING DRAFT SEQ... 52 0.038 1
(AC099598) Mus musculus clone RP23-82B7, WORKING DRAFT SEQUE... 52 0.038 1
(AC097991) Rattus norvegicus clone CH230-166D9, WORKING DRAF... 52 0.038 1
(CU469197) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 52 0.038 1
(AC094248) Rattus norvegicus clone CH230-3E5, *** SEQUENCING... 52 0.038 1
(AC092741) Mus musculus strain C57BL6/J chromosome 14 clone ... 52 0.038 1
(CU467646) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 52 0.038 1
(CU467623) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 52 0.038 1
(CU326350) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 52 0.038 1
(AC234031) Homo sapiens chromosome X clone RP11-747B2, WORKI... 52 0.038 1
(AC212735) Pongo abelii chromosome UNKNOWN clone CH276-125N1... 52 0.038 1
(AC180624) Strongylocentrotus purpuratus clone R3-3019I13, W... 52 0.038 1
(AC173916) Atelerix albiventris clone LB4-107O6, WORKING DRA... 52 0.038 1
(AC005507) Plasmodium falciparum chromosome 12 clone PFYACB8... 52 0.038 1
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI... 52 0.038 1
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI... 52 0.038 1
(AC004157) Plasmodium falciparum chromosome 12 clone PFYAC29... 52 0.038 1
(AZ483302) 1M0308F24R Mouse 10kb plasmid UUGC1M library Mus ... 52 0.038 1
(AQ980094) RPCI-23-350B8.TV RPCI-23 Mus musculus genomic clo... 52 0.038 1
(FH191582) CHO_OF3020xk14r1.ab1 CHO_OF3 Nicotiana tabacum ge... 52 0.038 1
(FH191501) CHO_OF3020xk14f1.ab1 CHO_OF3 Nicotiana tabacum ge... 52 0.038 1
(ET699249) CHO_OF391xa04f1.ab1 CHO_OF Nicotiana tabacum geno... 52 0.038 1
(DH496990) Monosiga ovata DNA, fosmid clone: MOF-062B14, gen... 52 0.038 1
(CR874201) Sus scrofa BES. 52 0.038 1
(CR512286) mth4-28H14RM1 BAC end, cultivar Jemalong A17 of M... 52 0.038 1
(BX140545) Danio rerio genomic clone DKEY-96E10, genomic sur... 52 0.038 1
(AG391705) Mus musculus molossinus DNA, clone:MSMg01-209A04.... 52 0.038 1
(BY748281) Mus musculus NOD-derived CD11c +ve dendritic cell... 52 0.038 1
(BY192527) Mus musculus NOD-derived CD11c +ve dendritic cell... 52 0.038 1
(GE798817) EST_scau_evk_887700 scauevk mixed_tissue Sebastes... 52 0.038 1
(EY326625) CAWY11724.fwd CAWY Helobdella robusta Subtracted ... 52 0.038 1
(EY326057) CAWY11348.rev CAWY Helobdella robusta Subtracted ... 52 0.038 1
(EX203207) SGT20w3_C09 normalized library from a mix of tamm... 52 0.038 1
(AC115579) Dictyostelium discoideum chromosome 2 map 6097680... 36 0.042 4
(AC174005) Strongylocentrotus purpuratus clone R3-3067A13, W... 46 0.042 4
(CU656047) Zebrafish DNA sequence from clone CH73-349G7 in l... 42 0.043 5
(CR352217) Zebrafish DNA sequence from clone CH211-129P13 in... 40 0.043 6
(AL022720) Human DNA sequence from clone RP3-357K22 on chrom... 46 0.043 4
(BX000453) Zebrafish DNA sequence from clone DKEY-157G7 in l... 40 0.043 6
(AC155806) Mus musculus BAC clone RP24-308M10 from chromosom... 50 0.043 3
(AC178476) Strongylocentrotus purpuratus clone R3-3039C18, W... 40 0.044 4
(AC180528) Strongylocentrotus purpuratus clone R3-3016G12, W... 42 0.045 5
(EY336087) CAWY7462.rev CAWY Helobdella robusta Subtracted E... 36 0.045 3
(AC158231) Mus musculus BAC clone RP24-510K1 from chromosome... 50 0.045 3
(CQ869646) Sequence 67 from Patent WO2004074320. 44 0.046 2
(AC121148) Mus musculus chromosome 3, clone RP24-369K4, comp... 46 0.046 3
(BX928757) Zebrafish DNA sequence from clone CH211-74M19 in ... 42 0.048 4
(DD391992) Method and nucleic acids for the improved treatme... 42 0.049 2
(CQ807248) Sequence 698 from Patent WO2004035803. 42 0.049 2
(AC107736) Mus musculus chromosome 7, clone RP23-354B2, comp... 40 0.049 8
(AC148054) Atelerix albiventris clone LB4-124B14, WORKING DR... 38 0.049 5
(AC160400) Mus musculus 6 BAC RP23-321M22 (Roswell Park Canc... 44 0.050 3
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ... 48 0.050 4
(AC115578) Dictyostelium discoideum chromosome 2 map complem... 42 0.051 3
(AC152946) Mus musculus 10 BAC RP23-40N7 (Roswell Park Cance... 40 0.052 5
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ... 36 0.053 9
(AC103252) Rattus norvegicus clone CH230-154M24, WORKING DRA... 50 0.054 5
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 36 0.056 8
(AC178713) Strongylocentrotus purpuratus clone R3-3006C17, W... 36 0.058 6
(EY326731) CAWY11788.rev CAWY Helobdella robusta Subtracted ... 36 0.058 3
(CU467615) Zebrafish DNA sequence from clone CH211-125L3 in ... 42 0.059 5
(AC111859) Rattus norvegicus clone CH230-203M15, *** SEQUENC... 44 0.059 3
(BX927311) Zebrafish DNA sequence from clone CH211-235E15 in... 44 0.059 5
(EY331851) CAWY4458.rev CAWY Helobdella robusta Subtracted E... 36 0.060 3
(EY358386) CAWZ5766.fwd CAWZ Helobdella robusta Primary Late... 36 0.060 3
(EY329748) CAWY2948.rev CAWY Helobdella robusta Subtracted E... 36 0.062 3
(AC145082) Mus musculus chromosome 3, clone RP24-333B11, com... 44 0.062 4
(AC165428) Strongylocentrotus purpuratus BAC clone contig co... 48 0.064 10
(AM425595) Vitis vinifera contig VV78X278410.3, whole genome... 48 0.064 2
(EB891242) 9837355 ZF26XL Danio rerio cDNA clone 3511931, mR... 40 0.064 2
(EY328700) CAWY1780.rev CAWY Helobdella robusta Subtracted E... 36 0.066 3
(CU468420) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 0.068 5
(BX550405) Glossina morsitans morsitans (Tseatse fly) EST fr... 40 0.069 2
(AQ994092) RPCI-23-383G7.TV RPCI-23 Mus musculus genomic clo... 48 0.070 2
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041... 36 0.070 8
(AX392735) Sequence 25 from Patent WO0212526. 38 0.071 7
(AR707082) Sequence 25 from patent US 6933145. 38 0.071 7
(AC178823) Strongylocentrotus purpuratus clone R3-23A16, WOR... 50 0.072 4
(CU407308) Zebrafish DNA sequence from clone CH211-54E20 in ... 34 0.072 6
(CU570736) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 0.072 7
(AC113031) Mus musculus chromosome 14, clone RP23-220B20, co... 44 0.075 6
(CT027780) Zebrafish DNA sequence from clone CH211-253P11 in... 36 0.075 4
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 44 0.075 6
(AC201353) Strongylocentrotus purpuratus clone R3-17A5, WORK... 46 0.076 5
(AM459058) Vitis vinifera contig VV78X166699.4, whole genome... 40 0.077 3
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6... 46 0.078 6
(AC218875) Tupaia belangeri clone CH275-339L16, WORKING DRAF... 46 0.080 3
(AL672199) Mouse DNA sequence from clone RP23-171O21 on chro... 42 0.080 2
(AC184584) Strongylocentrotus purpuratus clone R3-3050D12, W... 42 0.084 4
(AL603664) Mouse DNA sequence from clone RP23-247J12 on chro... 48 0.084 2
(AC125080) Mus musculus BAC clone RP24-68P23 from chromosome... 38 0.084 5
(AC092828) Homo sapiens 12 BAC RP11-282K24 (Roswell Park Can... 40 0.087 5
(AC159576) Macropus eugenii clone ME_KBa-215D6, WORKING DRAF... 46 0.088 3
(AC127385) Homo sapiens BAC clone RP13-489M19 from 4, comple... 40 0.089 2
(CR387996) Zebrafish DNA sequence from clone DKEY-183N6 in l... 36 0.090 2
(AC198820) Saimiri boliviensis boliviensis clone CH254-459M8... 36 0.090 2
(AC026827) Homo sapiens chromosome 8, clone RP11-678C14, com... 40 0.090 2
(AC129664) Homo sapiens BAC clone RP11-237A9 from 4, complet... 40 0.090 2
(AC064866) Homo sapiens chromosome 2 clone RP11-445G8, WORKI... 40 0.090 2
(AP004286) Homo sapiens genomic DNA, chromosome 8q23, clone:... 40 0.091 2
(AC105193) Homo sapiens chromosome 8, clone RP11-379M16, com... 40 0.091 2
(U70316) Dictyostelium discoideum IonA (iona) gene, partial ... 42 0.091 3
(DQ481664) Takifugu rubripes HoxAb gene cluster, complete se... 50 0.091 2
(AC024895) Homo sapiens chromosome 3 clone RP11-368C9, WORKI... 40 0.091 2
(AC181691) Strongylocentrotus purpuratus clone R3-1040F17, W... 40 0.091 2
(AC197644) Saimiri boliviensis boliviensis clone CH254-212J8... 36 0.091 2
(AC181907) Strongylocentrotus purpuratus clone R3-1012P21, W... 34 0.091 2
(AC135210) Danio rerio strain Tue clone CH211-172N10, WORKIN... 44 0.091 2
(CE192219) tigr-gss-dog-17000371468808 Dog Library Canis lup... 38 0.092 2
(AC090564) Homo sapiens chromosome 8, clone RP11-368C9, comp... 40 0.093 2
(CR388123) Zebrafish DNA sequence from clone CH211-158E10 in... 34 0.093 2
(CR392368) Zebrafish DNA sequence from clone DKEY-86E18 in l... 44 0.094 2
(BX005158) Zebrafish DNA sequence from clone DKEY-222N6 in l... 48 0.094 3
(AC174135) Strongylocentrotus purpuratus clone R3-1004A20, W... 36 0.095 2
(AC182407) Bos taurus clone CH240-515K22, WORKING DRAFT SEQU... 42 0.095 4
(AM485286) Vitis vinifera contig VV78X014476.17, whole genom... 44 0.095 2
(AC073716) Mus musculus clone RP23-202O1, WORKING DRAFT SEQU... 44 0.097 5
(BX649610) Zebrafish DNA sequence from clone CH211-170D11 in... 40 0.098 6
(CT025876) Zebrafish DNA sequence from clone DKEYP-118A9 in ... 40 0.099 5
(AC145766) Cicer arietinum strain FLIP84-92C clone gl1-4m10,... 44 0.099 2
(AC161260) Mus musculus BAC clone RP23-448A11 from chromosom... 44 0.100 5
(AC115607) Dictyostelium discoideum chromosome 2 map 4559693... 44 0.10 6
(AC115605) Dictyostelium discoideum chromosome 2 map 5817431... 42 0.10 3
(AL683808) Mouse DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.11 2
(AK080577) Mus musculus 7 days neonate cerebellum cDNA, RIKE... 44 0.11 2
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s... 40 0.11 5
(CR855360) Zebrafish DNA sequence from clone DKEY-178C13 in ... 42 0.11 5
(AC129359) Rattus norvegicus clone CH230-406D8, WORKING DRAF... 42 0.11 4
(BH098491) RPCI-24-345P6.TV RPCI-24 Mus musculus genomic clo... 38 0.11 2
(AC175839) Strongylocentrotus purpuratus clone R3-15M11, WOR... 44 0.12 6
(AQ108385) CIT-HSP-2379C13.TR CIT-HSP Homo sapiens genomic c... 40 0.12 2
(DR452952) CM008B01 Cotton Lambda Zap Express Library Gossyp... 42 0.12 2
(AC225534) Medicago truncatula clone mth2-102n4, WORKING DRA... 40 0.12 4
(EH611653) FDR306-P00043-DEPE-R_H13 FDR306 Danio rerio cDNA ... 36 0.12 2
(AC152820) Mus musculus chromosome 5 clone RP24-338L14, WORK... 46 0.12 3
(AQ191676) HS_3226_B1_C04_MR CIT Approved Human Genomic Sper... 40 0.12 2
(AC180681) Strongylocentrotus purpuratus clone R3-3087P23, W... 40 0.12 6
(BX294437) Human DNA sequence from clone RP11-478I12 on chro... 46 0.12 3
(AC117080) Dictyostelium discoideum chromosome 2 map complem... 36 0.12 9
(AC178945) Strongylocentrotus purpuratus clone R3-3121F1, WO... 38 0.12 3
(CC066353) CSU-K33r.4L9.T7 CSU-K33r Aedes aegypti genomic cl... 42 0.12 2
(AC021704) Homo sapiens clone RP11-335F8, WORKING DRAFT SEQU... 44 0.12 3
(AC178254) Strongylocentrotus purpuratus clone R3-3086N5, WO... 40 0.12 3
(AC176229) Strongylocentrotus purpuratus clone R3-3063A10, W... 48 0.13 5
(CU467907) Zebrafish DNA sequence from clone DKEY-167H10 in ... 38 0.13 6
(AC165319) Mus musculus chromosome 3 clone RP24-352P1 map 3,... 48 0.13 3
(AC189684) Gallus gallus BAC clone TAM33-5L13 from chromosom... 36 0.13 7
(AL772347) Mouse DNA sequence from clone RP23-160G19 on chro... 48 0.13 3
(CU326348) Zebrafish DNA sequence from clone CH211-190M22 in... 40 0.13 5
(AC128193) Rattus norvegicus clone CH230-443G9, WORKING DRAF... 44 0.13 3
(AC177490) Strongylocentrotus purpuratus clone R3-61N10, WOR... 42 0.13 3
(AY392443) Dictyostelium discoideum possible endotoxin gene,... 38 0.14 4
(FI003985) CHO_OF6895xk15r1.ab1 CHO_OF6 Nicotiana tabacum ge... 46 0.14 2
(FH462375) CHO_OF4946xi07r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 0.14 2
(CR936399) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.14 8
(AC180000) Strongylocentrotus purpuratus clone R3-16P21, WOR... 48 0.14 3
(BB996895) Ilyoplax pusilla mRNA, clone: ARN01A01NGRM0006_H1... 42 0.14 2
(CC079791) CSU-K33r.4L17.T7 CSU-K33r Aedes aegypti genomic c... 42 0.14 2
(AC093991) Rattus norvegicus clone CH230-46L22, WORKING DRAF... 44 0.14 4
(CE578964) tigr-gss-dog-17000366225420 Dog Library Canis lup... 42 0.14 2
(AC178354) Strongylocentrotus purpuratus clone R3-3105K15, W... 42 0.14 7
(CU855685) Zebrafish DNA sequence from clone CH211-172E9 in ... 36 0.14 6
(CU372927) Zebrafish DNA sequence from clone DKEY-173P11 in ... 40 0.14 7
(CU207276) Zebrafish DNA sequence from clone DKEY-18H3. 40 0.15 5
(AL929291) Zebrafish DNA sequence from clone CH211-189P10 in... 40 0.15 5
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 46 0.15 9
(AC181141) Strongylocentrotus purpuratus clone R3-16F8, WORK... 36 0.15 7
(CU929180) Zebrafish DNA sequence from clone CH1073-373N5 in... 50 0.15 1
(CU651660) Zebrafish DNA sequence from clone CH1073-112H4 in... 50 0.15 1
(CU179642) Zebrafish DNA sequence from clone CH211-36B24 in ... 50 0.15 1
(CU104704) Zebrafish DNA sequence from clone CH73-112L20 in ... 50 0.15 1
(CT737197) Zebrafish DNA sequence from clone DKEYP-94F8 in l... 50 0.15 1
(CT583662) Zebrafish DNA sequence from clone RP71-45H24 in l... 50 0.15 1
(CT030223) Zebrafish DNA sequence from clone CH73-52I22 in l... 50 0.15 1
(CR933779) Zebrafish DNA sequence from clone DKEY-13J5 in li... 50 0.15 1
(CR932017) Zebrafish DNA sequence from clone DKEY-33F9 in li... 50 0.15 1
(CR631124) Zebrafish DNA sequence from clone DKEY-52E24 in l... 50 0.15 1
(CR450744) Zebrafish DNA sequence from clone CH211-242F18 in... 50 0.15 1
(CR450684) Zebrafish DNA sequence from clone DKEY-60D5 in li... 50 0.15 1
(CR388176) Zebrafish DNA sequence from clone DKEY-109D19 in ... 50 0.15 1
(CR376782) Zebrafish DNA sequence from clone CH211-235O4 in ... 50 0.15 1
(CR318584) Zebrafish DNA sequence from clone CH211-123F21 in... 50 0.15 1
(BX914196) Zebrafish DNA sequence from clone DKEYP-71E8 in l... 50 0.15 1
(BX901882) Zebrafish DNA sequence from clone DKEY-276B18 in ... 50 0.15 1
(BX682233) Zebrafish DNA sequence from clone CH211-177P5 in ... 50 0.15 1
(BX571689) Zebrafish DNA sequence from clone DKEY-181H23 in ... 50 0.15 1
(BX537268) Zebrafish DNA sequence from clone DKEY-48A12 in l... 50 0.15 1
(BX470175) Zebrafish DNA sequence from clone DKEY-228K17 in ... 50 0.15 1
(BX470069) Zebrafish DNA sequence from clone RP71-22K7 in li... 50 0.15 1
(BX323881) Zebrafish DNA sequence from clone CH211-274G13 in... 50 0.15 1
(BX321879) Zebrafish DNA sequence from clone CH211-147M4 in ... 50 0.15 1
(BX248111) Zebrafish DNA sequence from clone DKEY-22L11 in l... 50 0.15 1
(BX005417) Zebrafish DNA sequence from clone DKEY-240N22 in ... 50 0.15 1
(BX005291) Zebrafish DNA sequence from clone CH211-186F16 in... 50 0.15 1
(BX004769) Zebrafish DNA sequence from clone DKEY-15I8 in li... 50 0.15 1
(BC130141) Xenopus laevis hypothetical protein LOC100037082,... 50 0.15 1
(AL935268) Zebrafish DNA sequence from clone CH211-199H23 in... 50 0.15 1
(AL935123) Zebrafish DNA sequence from clone CH211-194N18. 50 0.15 1
(AL929171) Zebrafish DNA sequence from clone CH211-132P20 in... 50 0.15 1
(AL928938) Zebrafish DNA sequence from clone BUSM1-64D20 in ... 50 0.15 1
(AL928671) Zebrafish DNA sequence from clone CH211-39M14. 50 0.15 1
(AL844887) Zebrafish DNA sequence from clone DKEY-66C10. 50 0.15 1
(BV552197) S221P61249FB5.T0 Yvonne Pan troglodytes troglodyt... 50 0.15 1
(BV533456) G591P627103RC12.T0 Clint Pan troglodytes verus ST... 50 0.15 1
(BV532915) G591P619039FC3.T0 Clint Pan troglodytes verus STS... 50 0.15 1
(BV524890) G591P607500FB3.T0 Clint Pan troglodytes verus STS... 50 0.15 1
(BV518883) G591P60107RC11.T0 Clint Pan troglodytes verus STS... 50 0.15 1
(BV518184) soj51e05.b1 Clint Pan troglodytes verus STS genom... 50 0.15 1
(BV507631) qfr63d07.g1 Clint Pan troglodytes verus STS genom... 50 0.15 1
(BV239544) S234P6472FC2.T0 EnglishShepherd Canis familiaris ... 50 0.15 1
(BV234435) S234P6512FE1.T0 EnglishShepherd Canis familiaris ... 50 0.15 1
(AB138390) Homo sapiens DNA, STS on chromosome 8, D8S0163i, ... 50 0.15 1
(S59342) nuclear pore complex glycoprotein p62 [mice, mRNA, ... 50 0.15 1
(CT571245) Mouse DNA sequence from clone RP23-2N7 on chromos... 50 0.15 1
(BX088553) Mouse DNA sequence from clone RP23-115D24 on chro... 50 0.15 1
(BC089317) Mus musculus nucleoporin 62, mRNA (cDNA clone MGC... 50 0.15 1
(BC005784) Mus musculus nucleoporin 62, mRNA (cDNA clone MGC... 50 0.15 1
(AY135690) Mus musculus argonaute 4 protein (Ago4) gene, com... 50 0.15 1
(AL833780) Mouse DNA sequence from clone RP23-24M22 on chrom... 50 0.15 1
(AL831735) Mouse DNA sequence from clone RP23-452D3 on chrom... 50 0.15 1
(AL645938) Mouse DNA sequence from clone RP23-15E24 on chrom... 50 0.15 1
(AL606935) Mouse DNA sequence from clone RP23-204N19 on chro... 50 0.15 1
(AL596209) Mouse DNA sequence from clone RP23-278F12 on chro... 50 0.15 1
(AL583891) Mouse DNA sequence from clone RP23-292L2 on chrom... 50 0.15 1
(AC170998) Mus musculus BAC clone RP24-137E7 from chromosome... 50 0.15 1
(AC161890) Mus musculus 6 BAC RP23-356P12 (Roswell Park Canc... 50 0.15 1
(AC154187) Mus musculus BAC clone RP24-444N2 from chromosome... 50 0.15 1
(AC140478) Mus musculus BAC clone RP24-149A3 from chromosome... 50 0.15 1
(AC138624) Mus musculus BAC clone RP23-187N1 from chromosome... 50 0.15 1
(AC138394) Mus musculus chromosome 3, clone RP23-333D8, comp... 50 0.15 1
(AC132304) Mus musculus BAC clone RP24-284M17 from 10, compl... 50 0.15 1
(AC126265) Mus musculus BAC clone RP23-383O12 from chromosom... 50 0.15 1
(AC100427) Mus musculus chromosome 10, clone RP23-136J15, co... 50 0.15 1
(AC099615) Mus musculus chromosome 1, clone RP23-412G3, comp... 50 0.15 1
(AC091683) Mus musculus strain C57BL/6J clone rp23-155l11 ma... 50 0.15 1
(BS000079) Pan troglodytes chromosome 22 clone:RP43-047O12, ... 50 0.15 1
(AC192997) Pan troglodytes BAC clone CH251-32E7 from chromos... 50 0.15 1
(AY588380) Humulus lupulus clone HlCAG6 microsatellite seque... 50 0.15 1
(AM484172) Vitis vinifera, whole genome shotgun sequence, co... 50 0.15 1
(AM480722) Vitis vinifera contig VV78X201080.7, whole genome... 50 0.15 1
(AM480128) Vitis vinifera contig VV78X157480.6, whole genome... 50 0.15 1
(AM476683) Vitis vinifera contig VV78X127553.6, whole genome... 50 0.15 1
(AM474617) Vitis vinifera contig VV78X189073.9, whole genome... 50 0.15 1
(AM466100) Vitis vinifera contig VV78X050574.3, whole genome... 50 0.15 1
(AM455386) Vitis vinifera contig VV78X222887.1, whole genome... 50 0.15 1
(AM446461) Vitis vinifera contig VV78X269872.9, whole genome... 50 0.15 1
(AM435475) Vitis vinifera contig VV78X054728.11, whole genom... 50 0.15 1
(AB025606) Arabidopsis thaliana genomic DNA, chromosome 5, B... 50 0.15 1
(CQ870358) Sequence 779 from Patent WO2004074320. 50 0.15 1
(BX538353) Cryptosporidium parvum chromosome 6, complete seq... 50 0.15 1
(AJ535986) Cotesia flavipes partial LW-Rh gene for long-wave... 50 0.15 1
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 50 0.15 1
(AC171131) Helobdella robusta clone CH306-1A2, complete sequ... 50 0.15 1
(AC171127) Helobdella robusta clone CH306-1A1, complete sequ... 50 0.15 1
(AP002813) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 50 0.15 1
(AP002366) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 50 0.15 1
(AP001006) Homo sapiens genomic DNA, chromosome 18 clone:RP1... 50 0.15 1
(AC216116) Homo sapiens FOSMID clone ABC11-49430700J22 from ... 50 0.15 1
(AC139338) Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 50 0.15 1
(AC121754) Homo sapiens 3 BAC RP11-32L2 (Roswell Park Cancer... 50 0.15 1
(AC024451) Homo sapiens chromosome 11, clone RP11-697N18, co... 50 0.15 1
(AC024106) Homo sapiens 3 BAC RP11-33K7 (Roswell Park Cancer... 50 0.15 1
(AC010899) Homo sapiens BAC clone RP11-543K1 from 2, complet... 50 0.15 1
(AC008752) Homo sapiens chromosome 19 clone CTD-2623N2, comp... 50 0.15 1
(AC151886) Saimiri boliviensis boliviensis clone CH254-164g1... 50 0.15 1
(AC151868) Callithrix jacchus clone CH259-214O14, WORKING DR... 50 0.15 1
(AC151287) Mus musculus chromosome 17 clone RP23-369C13, ***... 50 0.15 1
(AC149259) Papio anubis clone RP41-440C16, WORKING DRAFT SEQ... 50 0.15 1
(AC147700) Oryctolagus cuniculus clone LB1-125A1, WORKING DR... 50 0.15 1
(AC146624) Otolemur garnettii clone CH256-541E23, WORKING DR... 50 0.15 1
(AC144622) Mus musculus chromosome UNK clone RP24-320G14, WO... 50 0.15 1
(AC142376) Rattus norvegicus clone CH230-488J17, WORKING DRA... 50 0.15 1
(AC141377) Rattus norvegicus clone CH230-259J22, WORKING DRA... 50 0.15 1
(AC137159) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 50 0.15 1
(AC135265) Rattus norvegicus clone CH230-238B15, *** SEQUENC... 50 0.15 1
(AC135096) Rattus norvegicus clone CH230-280F24, *** SEQUENC... 50 0.15 1
(AC134180) Rattus norvegicus clone CH230-152K8, *** SEQUENCI... 50 0.15 1
(AC134106) Rattus norvegicus clone CH230-16E12, *** SEQUENCI... 50 0.15 1
(AC131071) Mus musculus chromosome 17 clone RP23-388L1 map 1... 50 0.15 1
(AC130665) Mus musculus clone RP23-369C13, WORKING DRAFT SEQ... 50 0.15 1
(AC129051) Rattus norvegicus clone CH230-89P7, *** SEQUENCIN... 50 0.15 1
(AC129045) Rattus norvegicus clone CH230-246H19, *** SEQUENC... 50 0.15 1
(AC129025) Rattus norvegicus clone CH230-48O6, *** SEQUENCIN... 50 0.15 1
(AC127104) Rattus norvegicus clone CH230-128A21, *** SEQUENC... 50 0.15 1
(AC122107) Rattus norvegicus clone CH230-43L7, *** SEQUENCIN... 50 0.15 1
(AC122087) Rattus norvegicus clone CH230-280H23, WORKING DRA... 50 0.15 1
(AC116531) Homo sapiens chromosome 8 clone RP11-142J9 map 8,... 50 0.15 1
(AC114098) Rattus norvegicus clone CH230-67J10, *** SEQUENCI... 50 0.15 1
(AC108905) Felis catus clone RP86-93G9, WORKING DRAFT SEQUEN... 50 0.15 1
(AC107525) Rattus norvegicus clone CH230-123I24, *** SEQUENC... 50 0.15 1
(AC106506) Rattus norvegicus clone CH230-201O15, WORKING DRA... 50 0.15 1
(AC105838) Rattus norvegicus clone CH230-46C20, *** SEQUENCI... 50 0.15 1
(AC098042) Rattus norvegicus clone CH230-60N19, WORKING DRAF... 50 0.15 1
(AC097090) Rattus norvegicus clone CH230-195J21, WORKING DRA... 50 0.15 1
(AC097029) Rattus norvegicus clone CH230-96C15, *** SEQUENCI... 50 0.15 1
(AC096426) Rattus norvegicus clone CH230-150O23, *** SEQUENC... 50 0.15 1
(AC095785) Rattus norvegicus clone CH230-9L20, *** SEQUENCIN... 50 0.15 1
(AC095499) Rattus norvegicus clone CH230-7P10, WORKING DRAFT... 50 0.15 1
(AC095194) Rattus norvegicus clone CH230-5H20, *** SEQUENCIN... 50 0.15 1
(FP102745) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.15 1
(FP015846) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.15 1
(CU915699) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.15 1
(CU694742) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.15 1
(CU656024) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 50 0.15 1
(AC084044) Mus musculus chromosome 11 clone RP23-278F12, WOR... 50 0.15 1
(AC084019) Mus musculus chromosome 11 clone RP23-20I17, WORK... 50 0.15 1

>(C89931) Dictyostelium discoideum slug cDNA, clone SSG637.
Length = 525

Score = 468 bits (236), Expect(3) = 0.0
Identities = 236/236 (100%)
Strand = Plus / Plus


Query: 650 ttcaaccaggtttatggacaggtttagcttctggttatctttttggaagaattcattcaa 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttcaaccaggtttatggacaggtttagcttctggttatctttttggaagaattcattcaa 343


Query: 710 ataggaatcatcatcattattataatccatcaccttcatataatagacctagaagttctt 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ataggaatcatcatcattattataatccatcaccttcatataatagacctagaagttctt 403


Query: 770 atagtagtggtagtagtggtggtagtggtatatcttcaagttcttcctcttattctggta 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atagtagtggtagtagtggtggtagtggtatatcttcaagttcttcctcttattctggta 463


Query: 830 cttcaagaagataattaaattataataaataaataaataaacctttttgtacattt 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 cttcaagaagataattaaattataataaataaataaataaacctttttgtacattt 519

Score = 266 bits (134), Expect(3) = 0.0
Identities = 134/134 (100%)
Strand = Plus / Plus


Query: 367 ttttgtattgcatttataggtttaattttatatgcagtatttaattggtgtggttcacct 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttttgtattgcatttataggtttaattttatatgcagtatttaattggtgtggttcacct 60


Query: 427 caaggtgatgatgatagtaatactgctcaaaataatactgcaactgataataattatcca 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caaggtgatgatgatagtaatactgctcaaaataatactgcaactgataataattatcca 120


Query: 487 ggtggtttcccagg 500
||||||||||||||
Sbjct: 121 ggtggtttcccagg 134

Score = 155 bits (78), Expect(3) = 0.0
Identities = 78/78 (100%)
Strand = Plus / Plus


Query: 550 tatggtggaaattatcaaggttatccaaatttaaataacaataataatgcaggtggttgt 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tatggtggaaattatcaaggttatccaaatttaaataacaataataatgcaggtggttgt 243


Query: 610 gctcaaccaaataatggc 627
||||||||||||||||||
Sbjct: 244 gctcaaccaaataatggc 261

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,100,661,991
Number of extensions: 84017389
Number of successful extensions: 12056381
Number of sequences better than 10.0: 9104
Length of query: 901
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 877
Effective length of database: 99,340,224,878
Effective search space: 87121377218006
Effective search space used: 87121377218006
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.18
Homology vs Protein
Query= Contig-U01585-1 (Contig-U01585-1Q) /CSM_Contig/Contig-U01585-1Q.Seq.d
(901 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q54P59) RecName: Full=Transmembrane protein 66; Flags: Precursor; 286 9e-76
EU850439_4(EU850439|pid:none) Adineta vaga dihydrogenpyrimidine ... 132 2e-29
Z49130_9(Z49130|pid:none) Caenorhabditis elegans Cosmid T06D8, c... 118 3e-25
FN318085_1(FN318085|pid:none) Schistosoma japonicum isolate Anhu... 115 3e-24
FN314043_1(FN314043|pid:none) Schistosoma japonicum isolate Anhu... 114 6e-24
FN357889_2(FN357889|pid:none) Schistosoma mansoni genome sequenc... 111 3e-23
(Q6AYN2) RecName: Full=Transmembrane protein 66; Flags: Precurso... 107 7e-22
(Q8R3Q0) RecName: Full=Transmembrane protein 66; Flags: Precurso... 106 9e-22
AK093942_1(AK093942|pid:none) Mus musculus cDNA fis, clone TRACH... 106 9e-22
AK088728_1(AK088728|pid:none) Mus musculus 2 days neonate thymus... 106 9e-22
CR861365_1(CR861365|pid:none) Pongo abelii mRNA; cDNA DKFZp459B0... 103 8e-21
(Q5R491) RecName: Full=Transmembrane protein 66; Flags: Precursor; 103 8e-21
AF100748_1(AF100748|pid:none) Homo sapiens HSPC035 protein mRNA,... 101 3e-20
AM920435_1208(AM920435|pid:none) Penicillium chrysogenum Wiscons... 90 1e-16
AM270334_2(AM270334|pid:none) Aspergillus niger contig An15c0070... 80 1e-13
AP007164_93(AP007164|pid:none) Aspergillus oryzae RIB40 genomic ... 53 1e-05

>(Q54P59) RecName: Full=Transmembrane protein 66; Flags: Precursor;
Length = 320

Score = 286 bits (731), Expect = 9e-76
Identities = 141/161 (87%), Positives = 141/161 (87%), Gaps = 17/161 (10%)
Frame = +1

Query: 1 ESYGHRNNNKGGDSKILLKDVQVLTLRSGEMTKARRSSPIQQMECIGGTATKELELYPKT 180
ESYGHRNNNKGGDSKILLKDVQVLTLRSGEMTKARRSSPIQQMECIGGTATKELELYPKT
Sbjct: 24 ESYGHRNNNKGGDSKILLKDVQVLTLRSGEMTKARRSSPIQQMECIGGTATKELELYPKT 83

Query: 181 IQCYNMGSNGVDVQWKCEATLDSTVRLGTIDVSCEGYSYPEDPYITADSCGVFYQLEYT- 357
IQCYNMGSNGVDVQWKCEATLDSTVRLGTIDVSCEGYSYPEDPYITADSCGVFYQLEYT
Sbjct: 84 IQCYNMGSNGVDVQWKCEATLDSTVRLGTIDVSCEGYSYPEDPYITADSCGVFYQLEYTN 143

Query: 358 ----------------XXXFCIAFIGLILYAVFNWCGSPQG 432
FCIAFIGLILYAVFNWCGSPQG
Sbjct: 144 EQRRKAALAEEETSWVQIIFCIAFIGLILYAVFNWCGSPQG 184

Score = 67.8 bits (164), Expect = 5e-10
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1

Query: 646 WFQPGLWTGLASGYLFGRIHSNRNHHH 726
WFQPGLWTGLASGYLFGRIHSNRNHHH
Sbjct: 256 WFQPGLWTGLASGYLFGRIHSNRNHHH 282

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 985,536,094
Number of extensions: 15713868
Number of successful extensions: 36337
Number of sequences better than 10.0: 16
Number of HSP's gapped: 36323
Number of HSP's successfully gapped: 17
Length of query: 300
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 172
Effective length of database: 636,901,312
Effective search space: 109547025664
Effective search space used: 109547025664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.69 gvh: 0.42 alm: 0.26 top: 0.40 tms: 0.07 mit: 0.12 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.04 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
20.0 %: nuclear
16.0 %: mitochondrial
8.0 %: plasma membrane
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for Contig-U01585-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0