Contig-U11246-1 |
Contig ID |
Contig-U11246-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
2625 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
5334786 |
End point |
5332158 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
5 |
Number of EST |
7 |
Link to clone list |
U11246 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.23 |
Homology vs DNA |
Query= Contig-U11246-1 (Contig-U11246-1Q) /CSM_Contig/Contig-U11246-1Q.Seq.d (2635 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ355781) Dictyostelium discoideum cDNA clone:dda58n06, 3' ... 533 0.0 4 (BJ331680) Dictyostelium discoideum cDNA clone:dda36j15, 5' ... 708 0.0 4 (AU060850) Dictyostelium discoideum slug cDNA, clone SLB719. 557 0.0 3 (AU269250) Dictyostelium discoideum vegetative cDNA clone:VS... 841 0.0 1 (BJ445059) Dictyostelium discoideum cDNA clone:ddv58f12, 3' ... 515 0.0 2 (AU034004) Dictyostelium discoideum slug cDNA, clone SLB719. 305 e-111 2 (BJ349481) Dictyostelium discoideum cDNA clone:dda36j15, 3' ... 367 1e-96 1 (AU269251) Dictyostelium discoideum vegetative cDNA clone:VS... 137 2e-27 1 (EY328158) CAWY1366.fwd CAWY Helobdella robusta Subtracted E... 36 4e-05 5 (AY588394) Humulus lupulus clone HlACA8 microsatellite seque... 56 4e-04 2 (DQ002662) Aegilops speltoides clone 23_H06 alpha-gliadin st... 34 4e-04 4 (EU401787) Triticum turgidum subsp. paleocolchicum clone 1-2... 34 6e-04 4 (BJ232460) Triticum aestivum cDNA clone:whe12j24, 5' end, si... 34 6e-04 4 (AC139324) Mus musculus chromosome 18 clone RP24-393N23, com... 42 8e-04 8 (BJ233243) Triticum aestivum cDNA clone:whe3n13, 5' end, sin... 34 9e-04 4 (EB324296) CNSN01-F-102315-501 Normalized CNS library (juven... 48 9e-04 3 (EA211815) Sequence 76130 from patent US 7214786. 34 0.001 4 (BQ807055) WHE3586_C04_F08ZS Wheat developing grains cDNA li... 34 0.001 4 (CJ633337) Triticum aestivum cDNA clone whdp14l07 5', Y.Ogih... 34 0.001 4 (EY351311) CAWZ18053.fwd CAWZ Helobdella robusta Primary Lat... 40 0.001 4 (BE431137) SUN011.G09F991223 ITEC SUN Wheat cDNA Library Tri... 32 0.001 5 (EA234236) Sequence 98551 from patent US 7214786. 34 0.001 4 (CA717403) wdk4c.pk005.g6 wdk4c Triticum aestivum cDNA clone... 34 0.001 4 (AF153362) Dictyostelium discoideum adenylyl cyclase (acrA) ... 48 0.002 6 (CV219481) EST879191 non-normalized T1 cDNA library Trichomo... 34 0.002 3 (CV219480) EST879190 non-normalized T1 cDNA library Trichomo... 34 0.002 3 (BQ246355) TaE15012H02R TaE15 Triticum aestivum cDNA clone T... 44 0.002 4 (AR548024) Sequence 3155 from patent US 6747137. 36 0.002 4 (BJ236569) Triticum aestivum cDNA clone:whe22d09, 5' end, si... 32 0.002 4 (I03366) Sequence 5 from Patent US 4826765. 34 0.002 4 (BF293702) WHE2154_A05_B10ZS Triticum turgidum L. var. durum... 36 0.003 4 (BJ233090) Triticum aestivum cDNA clone:whe3e19, 5' end, sin... 34 0.003 4 (EA203997) Sequence 68312 from patent US 7214786. 34 0.003 4 (BJ236455) Triticum aestivum cDNA clone:whe21m10, 5' end, si... 34 0.003 4 (BJ233388) Triticum aestivum cDNA clone:whe4h04, 5' end, sin... 34 0.003 4 (EA201214) Sequence 65529 from patent US 7214786. 34 0.003 4 (BF473534) WHE0929_E01_I01ZS Wheat 5-15 DAP spike cDNA libra... 34 0.003 4 (BJ236269) Triticum aestivum cDNA clone:whe21b04, 5' end, si... 34 0.003 4 (CA712798) wdk3c.pk015.i20 wdk3c Triticum aestivum cDNA clon... 32 0.003 4 (BJ232457) Triticum aestivum cDNA clone:whe12j20, 5' end, si... 34 0.003 4 (EA144403) Sequence 8718 from patent US 7214786. 36 0.003 4 (BJ232608) Triticum aestivum cDNA clone:whe1d07, 5' end, sin... 34 0.003 4 (BJ232740) Triticum aestivum cDNA clone:whe1m12, 5' end, sin... 34 0.003 4 (BJ232590) Triticum aestivum cDNA clone:whe1c05, 5' end, sin... 34 0.004 4 (CJ633284) Triticum aestivum cDNA clone whdp14i07 5', Y.Ogih... 34 0.004 4 (BJ237270) Triticum aestivum cDNA clone:whe25c08, 5' end, si... 34 0.004 4 (BQ838716) WHE3591_H04_O07ZS Wheat developing grains cDNA li... 34 0.004 4 (BE606345) WHE0905_A07_A13ZS Wheat 5-15 DAP spike cDNA libra... 32 0.004 4 (CJ635008) Triticum aestivum cDNA clone whdp1l11 5', Y.Ogiha... 34 0.004 4 (DQ002796) Aegilops tauschii clone 2-B10 alpha-gliadin stora... 36 0.004 4 (DQ002790) Aegilops tauschii clone 8-A08 alpha-gliadin stora... 36 0.004 4 (DQ002785) Aegilops tauschii clone 8-B10 alpha-gliadin stora... 36 0.004 4 (DQ002778) Aegilops tauschii clone 8-C07 alpha-gliadin stora... 36 0.004 4 (DQ002761) Aegilops tauschii clone 8-F03 alpha-gliadin stora... 36 0.004 4 (DQ002752) Aegilops tauschii clone 8-G04 alpha-gliadin stora... 36 0.004 4 (DQ002741) Aegilops tauschii clone 8-H07 alpha-gliadin stora... 36 0.004 4 (DQ002738) Aegilops tauschii clone 8-H11 alpha-gliadin stora... 36 0.004 4 (BQ806479) WHE3579_E10_I19ZS Wheat developing grains cDNA li... 34 0.004 4 (EA193867) Sequence 58182 from patent US 7214786. 34 0.004 4 (EA211874) Sequence 76189 from patent US 7214786. 34 0.005 4 (BQ838742) WHE3592_B10_C20ZS Wheat developing grains cDNA li... 34 0.005 4 (EH013428) USDA-FP_186229 Lysiphlebus testaceipes adult whol... 44 0.005 2 (EA211816) Sequence 76131 from patent US 7214786. 34 0.005 4 (BQ807060) WHE3586_C09_F18ZS Wheat developing grains cDNA li... 34 0.005 4 (CA717420) wdk4c.pk005.d21 wdk4c Triticum aestivum cDNA clon... 32 0.005 4 (CA717592) wdk4c.pk006.p6 wdk4c Triticum aestivum cDNA clone... 32 0.005 4 (DQ659323) Papaver rhoeas CIN-like protein (PapB) gene, part... 50 0.006 2 (EY374591) CAXA15159.fwd CAXA Helobdella robusta Subtracted ... 36 0.006 3 (DQ002704) Aegilops longissima clone 24_D09 alpha-gliadin st... 34 0.006 4 (BE637454) WHE0859_F11_K21ZS Wheat 20-45 DAP spike cDNA libr... 32 0.006 4 (BJ236879) Triticum aestivum cDNA clone:whe23i15, 5' end, si... 32 0.006 4 (CA712452) wdk3c.pk005.l8 wdk3c Triticum aestivum cDNA clone... 32 0.006 4 (BF292807) WHE2165_B03_D05ZS Triticum turgidum L. var. durum... 32 0.006 4 (BE497971) WHE0958_B09_D18ZS Wheat pre-anthesis spike cDNA l... 32 0.006 4 (BJ234515) Triticum aestivum cDNA clone:whe5j20, 5' end, sin... 32 0.006 4 (CA727234) wde1f.pk003.d6 wde1f Triticum aestivum cDNA clone... 32 0.006 4 (CA727194) wde1f.pk003.b18 wde1f Triticum aestivum cDNA clon... 32 0.007 4 (BJ234362) Triticum aestivum cDNA clone:whe9n13, 5' end, sin... 32 0.007 4 (BJ236947) Triticum aestivum cDNA clone:whe23m13, 5' end, si... 32 0.007 4 (BE606294) WHE0905_F02_K03ZS Wheat 5-15 DAP spike cDNA libra... 32 0.007 4 (AC129259) Rattus norvegicus clone CH230-15K6, WORKING DRAFT... 56 0.007 1 (AC095269) Rattus norvegicus clone CH230-10G10, *** SEQUENCI... 56 0.007 1 (EF569978) Triticum aestivum subsp. sphaerococcum alpha-glia... 34 0.007 4 (EF561274) Triticum aestivum alpha-gliadin (Gli-G1) mRNA, co... 34 0.007 4 (DQ417343) Triticum aestivum alpha-gliadin Gli2-LM2-12 gene,... 34 0.007 4 (DQ296195) Triticum turgidum subsp. durum clone FEI1 alpha-g... 34 0.007 4 (BG262147) WHE0871_D09_G17ZS Wheat 20-45 DAP spike cDNA libr... 32 0.007 4 (BJ234176) Triticum aestivum cDNA clone:whe8p14, 5' end, sin... 32 0.007 4 (BJ233314) Triticum aestivum cDNA clone:whe4b24, 5' end, sin... 32 0.007 4 (CA734245) wde2f.pk002.g1 wde2f Triticum aestivum cDNA clone... 32 0.007 4 (BJ237418) Triticum aestivum cDNA clone:whe25l16, 5' end, si... 32 0.007 4 (CA726909) wde1f.pk002.k18 wde1f Triticum aestivum cDNA clon... 32 0.008 4 (BJ233701) Triticum aestivum cDNA clone:whe6n13, 5' end, sin... 32 0.008 4 (BJ392337) Dictyostelium discoideum cDNA clone:dds27d12, 5' ... 32 0.008 5 (BJ235140) Triticum aestivum cDNA clone:whe15f13, 5' end, si... 32 0.008 4 (CA734361) wde2f.pk003.d12 wde2f Triticum aestivum cDNA clon... 32 0.008 4 (CA727216) wde1f.pk003.f18 wde1f Triticum aestivum cDNA clon... 32 0.008 4 (CA727282) wde1f.pk003.c12 wde1f Triticum aestivum cDNA clon... 32 0.008 4 (CA727329) wde1f.pk003.h23 wde1f Triticum aestivum cDNA clon... 32 0.008 4 (BJ236223) Triticum aestivum cDNA clone:whe20o13, 5' end, si... 32 0.008 4
>(BJ355781) Dictyostelium discoideum cDNA clone:dda58n06, 3' end, single read. Length = 710
Score = 533 bits (269), Expect(4) = 0.0 Identities = 269/269 (100%) Strand = Plus / Minus
Query: 803 ccaaccaatgctaatggcagctcaactccttcaggtagtggttatgtcacttcattcagt 862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 ccaaccaatgctaatggcagctcaactccttcaggtagtggttatgtcacttcattcagt 427
Query: 863 agtggtaatgttaatttgagaaagaataaacaatctggtgaaactaccccaattaaacaa 922 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 426 agtggtaatgttaatttgagaaagaataaacaatctggtgaaactaccccaattaaacaa 367
Query: 923 gatgctgcttcaaccacaacttcaacacctgccactccatcttcaaaagcagagtcaacc 982 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 366 gatgctgcttcaaccacaacttcaacacctgccactccatcttcaaaagcagagtcaacc 307
Query: 983 actgaagctgaaaccactagtaaaccttcaactcctactaccgttgattctgtctcaagt 1042 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 actgaagctgaaaccactagtaaaccttcaactcctactaccgttgattctgtctcaagt 247
Query: 1043 actacaactccagacaaatcaaatgttgt 1071 ||||||||||||||||||||||||||||| Sbjct: 246 actacaactccagacaaatcaaatgttgt 218
Score = 404 bits (204), Expect(4) = 0.0 Identities = 204/204 (100%) Strand = Plus / Minus
Query: 579 atccacaacaaatgtattttcaacaacaacctccatatccttattatggacaaccaccag 638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 710 atccacaacaaatgtattttcaacaacaacctccatatccttattatggacaaccaccag 651
Query: 639 ttgtgccagtggttaatcaaatgattcctcaaactacagggaagaaaacattggaaatta 698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 650 ttgtgccagtggttaatcaaatgattcctcaaactacagggaagaaaacattggaaatta 591
Query: 699 ttgatccaaaaaccaatgaaaaggtcatcattacatcaccaccaaaatcttcaacaaact 758 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 590 ttgatccaaaaaccaatgaaaaggtcatcattacatcaccaccaaaatcttcaacaaact 531
Query: 759 cgacagtcttaccaacttcaaata 782 |||||||||||||||||||||||| Sbjct: 530 cgacagtcttaccaacttcaaata 507
Score = 188 bits (95), Expect(4) = 0.0 Identities = 95/95 (100%) Strand = Plus / Minus
Query: 1151 gaagctgaaacttcaaccaccactccagcaactgaagttcaatcaccagtggaaacaacc 1210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 gaagctgaaacttcaaccaccactccagcaactgaagttcaatcaccagtggaaacaacc 79
Query: 1211 aaggaagagcaaccaaaagaagaggttaaaccaac 1245 ||||||||||||||||||||||||||||||||||| Sbjct: 78 aaggaagagcaaccaaaagaagaggttaaaccaac 44
Score = 32.2 bits (16), Expect(4) = 0.0 Identities = 16/16 (100%) Strand = Plus / Minus
Query: 1247 gaagtccaaccaccag 1262 |||||||||||||||| Sbjct: 43 gaagtccaaccaccag 28
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 2,643,400,716 Number of extensions: 167117772 Number of successful extensions: 16700937 Number of sequences better than 10.0: 2486 Length of query: 2635 Length of database: 95,242,211,685 Length adjustment: 25 Effective length of query: 2610 Effective length of database: 97,216,030,006 Effective search space: 253733838315660 Effective search space used: 253733838315660 X1: 11 (21.8 bits) S2: 23 (46.1 bits)
|
protein update |
2009. 6.29 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
1 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
2 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |