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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U11964-1
Contig ID Contig-U11964-1
Contig update 2002.12.18
Contig sequence 
>Contig-U11964-1 (Contig-U11964-1Q) /CSM_Contig/Contig-U11964-1Q.Seq.d
CACTGTTGGCCTACTGGNAAAAATTTTTATTTTTAGTAACAATCAAATAT
AAGATTTCTTATATTGGATACGTGGTGTACTTTTGTGTTTGGGTGGATTT
TATTATTTATTTATTTTAATCATCATTTTTATTTGTAATATATTTCATTT
TTATCACACAAAACACACACAAAACACACACTCACAAAAACACACACTCA
CACATAAATAAATACACAATAATAAAAGAAGAAAGAAAATGGAGAAAAGA
AAGAGTATATTTTTTGCAAATGATAGTGAAGATAATACATCATCAGGAGA
TTTAAGTAGTTTTACAAAACGTGGTACAATTACACCAGGTAAGATTGCAA
ATGCACGTGAAGGAGAGTTATCACAAATGATTGATGTTGAATCGGAACAG
AAATATCAAGAAATTATTGAACTTTTAGTTACAGGTGGTTATTTTAGAGC
ACGTATTTCAGGTTTATCACCATTTGATAAAGTTGTTGGTGGCATGGCTT
GGTCAATCACTGCTTCAAATGTTGATGTTGACGCTGATTTATTCTTTCAA
GAAAATTCAAATATTAAACAAAAAGTATCATTATCAGAAGAATTAATTAA
AGCATTAAATCGTATGAAATGTCCATTTCCATTACAAGCACAACATATTA
CATTATTGAATTATATAACATTATTTCCAATTATAAGATGGTTAATTACA
AAAGTAATTGAAACACGTGAAGAAACAGGTGATTTATTGAGAATGTATT-
---------ACAAGCATTCAATGAACGTATCATTAGAGAGACAGAGAAAT
TGGATGCATTGGAAACACCAGAGAATACTAAAGCATTACAAGCACTACGT
TCATTGGTACTATTGAATGAAACATTGATTGCTCAAGAGGAACTTTTCAA
ACAATCTTGTAAACGTCAAATGGTAGAATATAAACAAAAGATCGAACAAC
TCTTATCACAAGATGCCTCTACTCAAGAGGATCTTCAAGACAGTGATAGA
CAACAACAAATTCAACAAGCATTCGATAGTGATATTGGTAAATTAAAGAA
ATTGAAATTATTACTCAATAAAAAGAATAGAGATATCTCTTTGATTCAAC
GTTATCTCGATGAATTACCATCTCGTGCCGAACTATTACAATATCAAAGA
CAATTTGTTGAATTATCCGAACAAAGTAGTTCGAAATTAACCGAAACCAG
ACAATACTATACAACCTACAATACCTTTGAAGATAAGAAAACACTTTTAG
AAAATGAACTCTCAATTCTCAATTCAATTCAATCCAAATATAGCATAGCT
ATGTCTTCAACAAATAATAAAGAATTATTCATTAAATCAATGGATCAAAT
CATTGATGGTATTCAACAAGTTTTAGATAAATCTGAAAATAAATGGAATG
TTGAAAAAGTTCGTCATGATACTTTATCTGATCAATATATGACTTTATTA
GATCAAGAGAGAAATTATTATAAATTAACAAAAGACTTTGAAGAAGAATG
TAGAAAGAATGAATTATTAATTAAAAAATTAAATGAATTACAATAAATAA
ATAAATAAATAATAATAAAAAAAAAAAATTAAAAAAAATAAAATAAAATA
ATATAAAAATAATAAAATAATNATATTTTTNCCAA
Gap gap included
Contig length 1625
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 1915060
End point 1916666
Strand (PLUS/MINUS) PLUS
Number of clones 11
Number of EST 21
Link to clone list U11964
List of clone(s) 

est1=SFC233F,1,577
est2=VFH882F,5,544
est3=VHM707F,7,533
est4=VHB221F,29,628
est5=VHB531F,35,676
est6=VHJ120F,35,627
est7=VHA391F,45,677
est8=VHN779F,48,585
est9=VHO250F,50,678
est10=VHH305F,225,749
est11=VHB221Z,750,1548
est12=VHA391Z,755,1518
est13=SFC233Z,774,1522
est14=VHO250Z,830,1520
est15=VFH882Z,851,1515
est16=VHB531Z,902,1518
est17=VHJ120Z,991,1577
est18=VSH550Z,1126,1517
est19=VHH305Z,1127,1598
est20=VHN779Z,1127,1626
est21=VHM707Z,1200,1523
Translated Amino Acid sequence 
tvgllxkififsnnqi*dflywirgvllclggfyylfiliiificnifhfyhtkhtqnth
sqkhtlthk*IHNNKRRKKMEKRKSIFFANDSEDNTSSGDLSSFTKRGTITPGKIANARE
GELSQMIDVESEQKYQEIIELLVTGGYFRARISGLSPFDKVVGGMAWSITASNVDVDADL
FFQENSNIKQKVSLSEELIKALNRMKCPFPLQAQHITLLNYITLFPIIRWLITKVIETRE
ETGDLLRMY---

---QAFNERIIRETEKLDALETPENTKALQALRSLVLLNETLIAQEELFKQSCKRQMVEY
KQKIEQLLSQDASTQEDLQDSDRQQQIQQAFDSDIGKLKKLKLLLNKKNRDISLIQRYLD
ELPSRAELLQYQRQFVELSEQSSSKLTETRQYYTTYNTFEDKKTLLENELSILNSIQSKY
SIAMSSTNNKELFIKSMDQIIDGIQQVLDKSENKWNVEKVRHDTLSDQYMTLLDQERNYY
KLTKDFEEECRKNELLIKKLNELQ*ink*iiikkkn*kk*nkii*k**nnxifx
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgknfyf**qsnirflildtwctfvfgwillfiyfnhhfyl*yisflshkthtkht
ltkththt*intq**kkkengekkeyifck***r*yiirrfk*fyktwynytr*dckct*
rrvitnd*c*igteisrny*tfsyrwlf*styfrfiti**scwwhglvnhcfkc*c*r*f
ilsrkfky*tksiiirrin*siksyemsisitsttyyiielyniisnykmvnyksn*nt*
rnr*fienv---

---tsiq*tyh*rdreigcigntrey*sitsttfigtie*nidcsrgtfqtil*tsngri
*tkdrttlitrclysrgssrq**tttnstsir**yw*ikeieiitq*ke*rylfdstlsr
*itiscrtitisktic*iirtk*feinrnqtilynlqyl*r*entfrk*tlnsqfnsiqi
*hsyvfnk**riih*ingsnh*wystsfr*i*k*mec*ksss*yfi*siydfirsrekll
*inkrl*rrm*ke*iin*kik*itink*innnkkkklkkik*nnikiik*xyfxq

Frame B:
tvgllxkififsnnqi*dflywirgvllclggfyylfiliiificnifhfyhtkhtqnth
sqkhtlthk*IHNNKRRKKMEKRKSIFFANDSEDNTSSGDLSSFTKRGTITPGKIANARE
GELSQMIDVESEQKYQEIIELLVTGGYFRARISGLSPFDKVVGGMAWSITASNVDVDADL
FFQENSNIKQKVSLSEELIKALNRMKCPFPLQAQHITLLNYITLFPIIRWLITKVIETRE
ETGDLLRMY---

---QAFNERIIRETEKLDALETPENTKALQALRSLVLLNETLIAQEELFKQSCKRQMVEY
KQKIEQLLSQDASTQEDLQDSDRQQQIQQAFDSDIGKLKKLKLLLNKKNRDISLIQRYLD
ELPSRAELLQYQRQFVELSEQSSSKLTETRQYYTTYNTFEDKKTLLENELSILNSIQSKY
SIAMSSTNNKELFIKSMDQIIDGIQQVLDKSENKWNVEKVRHDTLSDQYMTLLDQERNYY
KLTKDFEEECRKNELLIKKLNELQ*ink*iiikkkn*kk*nkii*k**nnxifx

Frame C:
llaywxkflflvtikykisyigyvvyfcvwvdfiiylf*ssflfviyfifitqnthktht
hknthshinkytiikeerkwrkervyflqmivkiihhqei*vvlqnvvqlhqvrlqmhvk
esyhk*lmlnrnrnikkllnf*lqvvilehvfqvyhhlikllvawlgqsllqmlmltliy
sfkkiqilnkkyhyqkn*lkh*iv*nvhfhykhnilhy*ii*hyfql*dg*lqk*lkhvk
kqviy*eci---

---khsmnvslerqrnwmhwkhqrilkhykhyvhwyy*mkh*llkrnfsnnlvnvkw*ni
nkrsnnsyhkmpllkrifktvidnnkfnkhsivilvn*rn*nyysikrieisl*fnvism
nyhlvpnyynikdnllnypnkvvrn*pkpdntiqptiplkirkhf*kmnsqfsiqfnpni
a*lclqqiiknyslnqwikslmvfnkf*inlkingmlkkfvmilylini*ly*ikreiii
n*qktlkknvermny*lkn*mnynk*ink***kkkikknkik*yknnkixifxp
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U11964-1 (Contig-U11964-1Q)
/CSM_Contig/Contig-U11964-1Q.Seq.d
         (1635 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U11964-1 (Contig-U11964-1Q) /CSM_Contig/Conti...  2424  0.0
Contig-U10384-1 (Contig-U10384-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U09690-1 (Contig-U09690-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U13706-1 (Contig-U13706-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U12953-1 (Contig-U12953-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U12287-1 (Contig-U12287-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U11510-1 (Contig-U11510-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U11332-1 (Contig-U11332-1Q) /CSM_Contig/Conti...    40  0.007
Contig-U11197-1 (Contig-U11197-1Q) /CSM_Contig/Conti...    40  0.007

>Contig-U11964-1 (Contig-U11964-1Q) /CSM_Contig/Contig-U11964-1Q.Seq.d
          Length = 1635

 Score = 2424 bits (1223), Expect = 0.0
 Identities = 1253/1253 (100%)
 Strand = Plus / Plus

                                                                        
Query: 255  gtatattttttgcaaatgatagtgaagataatacatcatcaggagatttaagtagtttta 314
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255  gtatattttttgcaaatgatagtgaagataatacatcatcaggagatttaagtagtttta 314

                                                                        
Query: 315  caaaacgtggtacaattacaccaggtaagattgcaaatgcacgtgaaggagagttatcac 374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315  caaaacgtggtacaattacaccaggtaagattgcaaatgcacgtgaaggagagttatcac 374

                                                                        
Query: 375  aaatgattgatgttgaatcggaacagaaatatcaagaaattattgaacttttagttacag 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375  aaatgattgatgttgaatcggaacagaaatatcaagaaattattgaacttttagttacag 434

                                                                        
Query: 435  gtggttattttagagcacgtatttcaggtttatcaccatttgataaagttgttggtggca 494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435  gtggttattttagagcacgtatttcaggtttatcaccatttgataaagttgttggtggca 494

                                                                        
Query: 495  tggcttggtcaatcactgcttcaaatgttgatgttgacgctgatttattctttcaagaaa 554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495  tggcttggtcaatcactgcttcaaatgttgatgttgacgctgatttattctttcaagaaa 554

                                                                        
Query: 555  attcaaatattaaacaaaaagtatcattatcagaagaattaattaaagcattaaatcgta 614
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555  attcaaatattaaacaaaaagtatcattatcagaagaattaattaaagcattaaatcgta 614

                                                                        
Query: 615  tgaaatgtccatttccattacaagcacaacatattacattattgaattatataacattat 674
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615  tgaaatgtccatttccattacaagcacaacatattacattattgaattatataacattat 674

                                                                        
Query: 675  ttccaattataagatggttaattacaaaagtaattgaaacacgtgaagaaacaggtgatt 734
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675  ttccaattataagatggttaattacaaaagtaattgaaacacgtgaagaaacaggtgatt 734

                                                                        
Query: 735  tattgagaatgtattnnnnnnnnnnacaagcattcaatgaacgtatcattagagagacag 794
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735  tattgagaatgtattnnnnnnnnnnacaagcattcaatgaacgtatcattagagagacag 794

                                                                        
Query: 795  agaaattggatgcattggaaacaccagagaatactaaagcattacaagcactacgttcat 854
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795  agaaattggatgcattggaaacaccagagaatactaaagcattacaagcactacgttcat 854

                                                                        
Query: 855  tggtactattgaatgaaacattgattgctcaagaggaacttttcaaacaatcttgtaaac 914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855  tggtactattgaatgaaacattgattgctcaagaggaacttttcaaacaatcttgtaaac 914

                                                                        
Query: 915  gtcaaatggtagaatataaacaaaagatcgaacaactcttatcacaagatgcctctactc 974
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915  gtcaaatggtagaatataaacaaaagatcgaacaactcttatcacaagatgcctctactc 974

                                                                        
Query: 975  aagaggatcttcaagacagtgatagacaacaacaaattcaacaagcattcgatagtgata 1034
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975  aagaggatcttcaagacagtgatagacaacaacaaattcaacaagcattcgatagtgata 1034

                                                                        
Query: 1035 ttggtaaattaaagaaattgaaattattactcaataaaaagaatagagatatctctttga 1094
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 ttggtaaattaaagaaattgaaattattactcaataaaaagaatagagatatctctttga 1094

                                                                        
Query: 1095 ttcaacgttatctcgatgaattaccatctcgtgccgaactattacaatatcaaagacaat 1154
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 ttcaacgttatctcgatgaattaccatctcgtgccgaactattacaatatcaaagacaat 1154

                                                                        
Query: 1155 ttgttgaattatccgaacaaagtagttcgaaattaaccgaaaccagacaatactatacaa 1214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1155 ttgttgaattatccgaacaaagtagttcgaaattaaccgaaaccagacaatactatacaa 1214

                                                                        
Query: 1215 cctacaatacctttgaagataagaaaacacttttagaaaatgaactctcaattctcaatt 1274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1215 cctacaatacctttgaagataagaaaacacttttagaaaatgaactctcaattctcaatt 1274

                                                                        
Query: 1275 caattcaatccaaatatagcatagctatgtcttcaacaaataataaagaattattcatta 1334
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1275 caattcaatccaaatatagcatagctatgtcttcaacaaataataaagaattattcatta 1334

                                                                        
Query: 1335 aatcaatggatcaaatcattgatggtattcaacaagttttagataaatctgaaaataaat 1394
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1335 aatcaatggatcaaatcattgatggtattcaacaagttttagataaatctgaaaataaat 1394

                                                                        
Query: 1395 ggaatgttgaaaaagttcgtcatgatactttatctgatcaatatatgactttattagatc 1454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1395 ggaatgttgaaaaagttcgtcatgatactttatctgatcaatatatgactttattagatc 1454

                                                                 
Query: 1455 aagagagaaattattataaattaacaaaagactttgaagaagaatgtagaaag 1507
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1455 aagagagaaattattataaattaacaaaagactttgaagaagaatgtagaaag 1507


 Score =  184 bits (93), Expect = 2e-46
 Identities = 96/96 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  cactgttggcctactggnaaaaatttttatttttagtaacaatcaaatataagatttctt 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cactgttggcctactggnaaaaatttttatttttagtaacaatcaaatataagatttctt 60

                                              
Query: 61 atattggatacgtggtgtacttttgtgtttgggtgg 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 61 atattggatacgtggtgtacttttgtgtttgggtgg 96


>Contig-U10384-1 (Contig-U10384-1Q) /CSM_Contig/Contig-U10384-1Q.Seq.d
          Length = 1286

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 2  actgttggcctactggnaaaaatttt 27
          |||||||||||||||| |||||||||
Sbjct: 1  actgttggcctactggtaaaaatttt 26


>Contig-U10968-1 (Contig-U10968-1Q) /CSM_Contig/Contig-U10968-1Q.Seq.d
          Length = 2025

 Score = 42.1 bits (21), Expect = 0.002
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                      
Query: 1  cactgttggcctactggnaaaaattttt 28
          ||||||||||||||||| ||||| ||||
Sbjct: 1  cactgttggcctactgggaaaaaatttt 28


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,131
Number of Sequences: 6905
Number of extensions: 26131
Number of successful extensions: 3700
Number of sequences better than 10.0: 748
length of query: 1635
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1619
effective length of database: 5,564,391
effective search space: 9008749029
effective search space used: 9008749029
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.28
Homology vs DNA 
Query= Contig-U11964-1 (Contig-U11964-1Q) /CSM_Contig/Contig-U11964-1Q.Seq.d
         (1635 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ437073) Dictyostelium discoideum cDNA clone:ddv33i06, 3' ...  1445   0.0    1
(BJ436647) Dictyostelium discoideum cDNA clone:ddv31f23, 3' ...  1427   0.0    1
(BJ399286) Dictyostelium discoideum cDNA clone:dds5a10, 3' e...  1390   0.0    1
(BJ445452) Dictyostelium discoideum cDNA clone:ddv59c14, 3' ...  1287   0.0    1
(BJ434410) Dictyostelium discoideum cDNA clone:ddv16d22, 3' ...  1245   0.0    1
(BJ437485) Dictyostelium discoideum cDNA clone:ddv34m07, 3' ...  1136   0.0    1
(BJ422178) Dictyostelium discoideum cDNA clone:ddv45j01, 5' ...   981   0.0    1
(BJ418903) Dictyostelium discoideum cDNA clone:ddv34m07, 5' ...   837   0.0    2
(BJ418146) Dictyostelium discoideum cDNA clone:ddv31f23, 5' ...   839   0.0    2
(BJ426577) Dictyostelium discoideum cDNA clone:ddv59c14, 5' ...   841   0.0    2
(BJ442180) Dictyostelium discoideum cDNA clone:ddv49g05, 3' ...   850   0.0    1
(BJ418542) Dictyostelium discoideum cDNA clone:ddv33i06, 5' ...   741   0.0    2
(BJ423400) Dictyostelium discoideum cDNA clone:ddv49g05, 5' ...   729   0.0    2
(BJ387825) Dictyostelium discoideum cDNA clone:dds5a10, 5' e...   640   0.0    4
(BJ426421) Dictyostelium discoideum cDNA clone:ddv58n19, 5' ...   656   0.0    2
(BJ413732) Dictyostelium discoideum cDNA clone:ddv16d22, 5' ...   575   0.0    3
(BJ425578) Dictyostelium discoideum cDNA clone:ddv56n01, 5' ...   553   0.0    2
(BJ440916) Dictyostelium discoideum cDNA clone:ddv45j01, 3' ...   658   0.0    1
(BJ445255) Dictyostelium discoideum cDNA clone:ddv58n19, 3' ...   607   e-169  1
(AU267612) Dictyostelium discoideum vegetative cDNA clone:VS...   603   e-168  1
(BJ444374) Dictyostelium discoideum cDNA clone:ddv56n01, 3' ...   490   e-134  1
(DT607214) ACAG-aaa53a08.g1 Hydra_EST_UCI-9 Hydra magnipapil...    48   2e-05  2
(DN604085) ACAC-aab87h19.g1 Hydra EST UCI 7 Hydra magnipapil...    48   2e-05  2
(EH632656) EST3763 LK04 Laupala kohalensis cDNA clone 106102...    50   7e-05  2
(FC651766) CAXW12106.fwd CAXW Lottia gigantea from female go...    42   0.001  2
(BJ388779) Dictyostelium discoideum cDNA clone:dds16o04, 5' ...    52   0.001  2
(BJ371141) Dictyostelium discoideum cDNA clone:ddc56g20, 5' ...    34   0.013  3
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   0.020  15
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    36   0.034  14
(ET199899) MUGQ_CH252P400E14T7_CP762_059 CHORI-252 Vervet Mo...    40   0.054  2
(CE632682) tigr-gss-dog-17000366722551 Dog Library Canis lup...    52   0.068  1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   0.10   14
(BD100079) Novel genes cloned in humanneuroblastoma and frag...    42   0.11   2
(BD020141) Novel gene and novel gene fragment cloned in huma...    42   0.11   2
(BJ414179) Dictyostelium discoideum cDNA clone:ddv18g08, 5' ...    34   0.19   3
(BJ416008) Dictyostelium discoideum cDNA clone:ddv24c15, 5' ...    34   0.24   3
(CR759958) Zebrafish DNA sequence from clone DKEY-50G2 in li...    50   0.27   1
(CR962127) Medicago truncatula chromosome 5 clone mth2-181n9...    50   0.27   1
(EJ122536) 1092343379815 Global-Ocean-Sampling_GS-27-01-01-1...    50   0.27   1
(BJ416704) Dictyostelium discoideum cDNA clone:ddv27d04, 5' ...    50   0.27   1
(CJ464960) Macaca fascicularis mRNA, clone: QnpA-13881, 5' e...    40   0.37   2
(CJ464923) Macaca fascicularis mRNA, clone: QnpA-13833, 5' e...    40   0.37   2
(AL844506) Plasmodium falciparum chromosome  7.                    36   0.44   20
(BJ411857) Dictyostelium discoideum cDNA clone:ddv6h04, 5' e...    40   0.49   3
(BJ411566) Dictyostelium discoideum cDNA clone:ddv4n20, 5' e...    40   0.73   2
(AC092430) Homo sapiens chromosome 2 clone RP11-71H2, WORKIN...    34   0.77   11
(BJ413540) Dictyostelium discoideum cDNA clone:ddv16k06, 5' ...    32   0.78   3
(BJ396655) Dictyostelium discoideum cDNA clone:dds43p09, 5' ...    38   0.81   2
(AC163493) Mus musculus chromosome 5 clone RP23-416B2 map 5,...    36   0.87   12
(CR388413) Zebrafish DNA sequence from clone DKEY-270B7 in l...    42   0.87   4
(EK022497) 1092955341513 Global-Ocean-Sampling_GS-31-01-01-1...    48   1.1    1
(EL474594) CHUL2538.b1_C12.ab1 CHU(LMS) puzzle sunflower Hel...    48   1.1    1
(BJ370153) Dictyostelium discoideum cDNA clone:ddc53h03, 5' ...    48   1.1    1
(BJ332620) Dictyostelium discoideum cDNA clone:dda39b23, 5' ...    48   1.1    1
(CP000847) Rickettsia akari str. Hartford, complete genome.        48   1.1    1
(CP000053) Rickettsia felis URRWXCal2, complete genome.            48   1.1    1
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    36   1.1    10
(AC155333) Mus musculus 6 BAC RP24-475M8 (Roswell Park Cance...    38   1.2    5
(AC201438) Strongylocentrotus purpuratus clone R3-3013F8, WO...    40   1.2    6
(AP010168) Lotus japonicus genomic DNA, chromosome 3, clone:...    38   1.3    5
(EJ420584) 1093012228363 Global-Ocean-Sampling_GS-28-01-01-1...    42   1.4    3
(CJ463553) Macaca fascicularis mRNA, clone: QnpA-11920, 5' e...    40   1.4    2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   1.5    22
(CJ449779) Macaca fascicularis mRNA, clone: QflA-15311, 5' e...    38   1.5    2
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255...    44   1.6    20
(AF402141) Schizophyllum commune mitochondrial DNA, complete...    36   1.7    5
(BH771017) LLMGtag739 MG1363 Random Sequence Tag Library Lac...    42   2.3    3
(AF066982) Bombus balteatus cytochrome oxidase I gene, mitoc...    42   2.4    2
(AF066979) Bombus dahlbomii cytochrome oxidase I gene, mitoc...    42   2.4    2
(AF066977) Bombus ruderarius cytochrome oxidase I gene, mito...    42   2.4    2
(AF066976) Bombus pascuorum cytochrome oxidase I gene, mitoc...    42   2.4    2
(AM406671) Lactococcus lactis subsp. cremoris MG1363, comple...    42   2.9    23
(CT631501) Danio rerio EST, clone ZF_mu_46k03 3'.                  34   2.9    2
(EF523359) Bombus humilis clone 1 cytochrome oxidase subunit...    42   3.1    2
(AR227778) Sequence 3 from patent US 6444877.                      32   3.5    6
(L26577) Bombus rupestris cytochrome oxidase I gene, partial...    42   3.7    2
(AC231288) Homo sapiens chromosome UNKNOWN clone ABC7-424018...    36   3.9    5
(ED208947) AUAC-aal90d03.g1 Ascaris suum whole genome shotgu...    38   3.9    3
(AL773517) Mouse DNA sequence from clone RP24-170J19 on chro...    46   4.2    1
(AC163390) Mus musculus chromosome 1, clone RP24-300C19, com...    46   4.2    1
(AC161408) Mus musculus chromosome 1, clone RP24-329G10, com...    46   4.2    1
(AC160555) Mus musculus chromosome 5, clone RP23-387L12, com...    46   4.2    1
(AC153967) Mus musculus 10 BAC RP24-372A5 (Roswell Park Canc...    46   4.2    1
(AC133511) Mus musculus BAC clone RP23-413E2 from 10, comple...    46   4.2    1
(AC115748) Mus musculus chromosome 1, clone RP23-13N24, comp...    46   4.2    1
(AC102892) Mus musculus chromosome 5, clone RP24-362B10, com...    46   4.2    1
(AC161853) Bos taurus clone CH240-97A18, WORKING DRAFT SEQUE...    46   4.2    1
(AC142356) Rattus norvegicus clone CH230-494N12, WORKING DRA...    46   4.2    1
(AC129255) Rattus norvegicus clone CH230-202J21, *** SEQUENC...    46   4.2    1
(AC115521) Rattus norvegicus chromosome 18 clone CH230-1D8, ...    46   4.2    1
(AC112858) Rattus norvegicus clone CH230-173M21, WORKING DRA...    46   4.2    1
(AC223207) Bos taurus clone CH240-426G11, WORKING DRAFT SEQU...    46   4.2    1
(AC189254) Brassica rapa subsp. pekinensis clone KBrB019O05,...    46   4.2    1
(AC172875) Brassica rapa subsp. pekinensis clone KBrH014P02,...    46   4.2    1
(AC167875) Bos taurus clone CH240-202L22, WORKING DRAFT SEQU...    46   4.2    1
(AC167118) Mus musculus chromosome 1 clone RP23-390N4 map 1,...    46   4.2    1
(AC164152) Mus musculus chromosome 1 clone RP24-118J16 map 1...    46   4.2    1
(AK052688) Mus musculus 0 day neonate kidney cDNA, RIKEN ful...    46   4.2    1
(AZ557220) RPCI-23-178D18.TV RPCI-23 Mus musculus genomic cl...    46   4.2    1
(AZ444177) 1M0239G22F Mouse 10kb plasmid UUGC1M library Mus ...    46   4.2    1

>(BJ437073) Dictyostelium discoideum cDNA clone:ddv33i06, 3' end,
            single read.
          Length = 799

 Score = 1445 bits (729), Expect = 0.0
 Identities = 729/729 (100%)
 Strand = Plus / Minus


Query: 760  acaagcattcaatgaacgtatcattagagagacagagaaattggatgcattggaaacacc 819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799  acaagcattcaatgaacgtatcattagagagacagagaaattggatgcattggaaacacc 740


Query: 820  agagaatactaaagcattacaagcactacgttcattggtactattgaatgaaacattgat 879
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739  agagaatactaaagcattacaagcactacgttcattggtactattgaatgaaacattgat 680


Query: 880  tgctcaagaggaacttttcaaacaatcttgtaaacgtcaaatggtagaatataaacaaaa 939
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679  tgctcaagaggaacttttcaaacaatcttgtaaacgtcaaatggtagaatataaacaaaa 620


Query: 940  gatcgaacaactcttatcacaagatgcctctactcaagaggatcttcaagacagtgatag 999
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619  gatcgaacaactcttatcacaagatgcctctactcaagaggatcttcaagacagtgatag 560


Query: 1000 acaacaacaaattcaacaagcattcgatagtgatattggtaaattaaagaaattgaaatt 1059
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559  acaacaacaaattcaacaagcattcgatagtgatattggtaaattaaagaaattgaaatt 500


Query: 1060 attactcaataaaaagaatagagatatctctttgattcaacgttatctcgatgaattacc 1119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499  attactcaataaaaagaatagagatatctctttgattcaacgttatctcgatgaattacc 440


Query: 1120 atctcgtgccgaactattacaatatcaaagacaatttgttgaattatccgaacaaagtag 1179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439  atctcgtgccgaactattacaatatcaaagacaatttgttgaattatccgaacaaagtag 380


Query: 1180 ttcgaaattaaccgaaaccagacaatactatacaacctacaatacctttgaagataagaa 1239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379  ttcgaaattaaccgaaaccagacaatactatacaacctacaatacctttgaagataagaa 320


Query: 1240 aacacttttagaaaatgaactctcaattctcaattcaattcaatccaaatatagcatagc 1299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319  aacacttttagaaaatgaactctcaattctcaattcaattcaatccaaatatagcatagc 260


Query: 1300 tatgtcttcaacaaataataaagaattattcattaaatcaatggatcaaatcattgatgg 1359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259  tatgtcttcaacaaataataaagaattattcattaaatcaatggatcaaatcattgatgg 200


Query: 1360 tattcaacaagttttagataaatctgaaaataaatggaatgttgaaaaagttcgtcatga 1419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199  tattcaacaagttttagataaatctgaaaataaatggaatgttgaaaaagttcgtcatga 140


Query: 1420 tactttatctgatcaatatatgactttattagatcaagagagaaattattataaattaac 1479
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139  tactttatctgatcaatatatgactttattagatcaagagagaaattattataaattaac 80


Query: 1480 aaaagactt 1488
            |||||||||
Sbjct: 79   aaaagactt 71

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,683,946,719
Number of extensions: 109472885
Number of successful extensions: 9573331
Number of sequences better than 10.0: 280
Length of query: 1635
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1611
Effective length of database: 97,308,875,965
Effective search space: 156764599179615
Effective search space used: 156764599179615
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 1
Homology vs Protein 
Query= Contig-U11964-1 (Contig-U11964-1Q) /CSM_Contig/Contig-U11964-1Q.Seq.d
         (1635 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54CV3) RecName: Full=Coiled-coil domain-containing protein 93 ...   410   e-113
BC115269_1(BC115269|pid:none) Danio rerio coiled-coil domain con...   178   4e-43
(Q640U7) RecName: Full=Coiled-coil domain-containing protein 93;...   172   3e-41
BC134535_1(BC134535|pid:none) Bos taurus hypothetical LOC616839,...   170   1e-40
AM393188_1(AM393188|pid:none) Synthetic construct Homo sapiens c...   170   2e-40
AB384355_1(AB384355|pid:none) Synthetic construct DNA, clone: pF...   170   2e-40
AK159415_1(AK159415|pid:none) Mus musculus osteoclast-like cell ...   168   6e-40
AK085701_1(AK085701|pid:none) Mus musculus 10 days lactation, ad...   168   6e-40
BC024674_1(BC024674|pid:none) Mus musculus coiled-coil domain co...   168   6e-40
(Q5BJT7) RecName: Full=Coiled-coil domain-containing protein 93;...   167   1e-39
AK014621_1(AK014621|pid:none) Mus musculus 0 day neonate skin cD...   149   2e-34
AK052300_1(AK052300|pid:none) Mus musculus 13 days embryo heart ...   149   2e-34
AK082581_1(AK082581|pid:none) Mus musculus 0 day neonate cerebel...   149   2e-34
AE013599_2354(AE013599|pid:none) Drosophila melanogaster chromos...   136   2e-30
CR954218_92(CR954218|pid:none) Ostreococcus tauri strain OTTH059...   121   8e-26
AK020306_1(AK020306|pid:none) Mus musculus adult male epididymis...   120   2e-25
CP000597_87(CP000597|pid:none) Ostreococcus lucimarinus CCE9901 ...   102   5e-20
AY034994_1(AY034994|pid:none) Arabidopsis thaliana unknown prote...    92   4e-17
AK318786_1(AK318786|pid:none) Arabidopsis thaliana AT4G32560 mRN...    92   4e-17
BT047044_1(BT047044|pid:none) Salmo salar clone ssal-eve-507-384...    91   1e-16
BT076965_1(BT076965|pid:none) Caligus rogercresseyi clone crog-e...    87   1e-15
AF077536_8(AF077536|pid:none) Caenorhabditis elegans cosmid C16A...    82   6e-14
AL050398_4(AL050398|pid:none) Arabidopsis thaliana DNA chromosom...    74   2e-11
BC125703_1(BC125703|pid:none) Xenopus tropicalis TAO kinase 2, m...    42   0.085
(Q6GPK9) RecName: Full=Serine/threonine-protein kinase TAO2;    ...    42   0.085
T19608(T19608)hypothetical protein C31E10.5 - Caenorhabditis ele...    40   0.25
Z78539_5(Z78539|pid:none) Caenorhabditis elegans Cosmid C31E10, ...    40   0.25
CP001034_763(CP001034|pid:none) Natranaerobius thermophilus JW/N...    37   2.1
CP000939_2486(CP000939|pid:none) Clostridium botulinum B1 str. O...    37   2.7
BC065697_1(BC065697|pid:none) Mus musculus GRIP and coiled-coil ...    37   2.7
FM992695_876(FM992695|pid:none) Candida dubliniensis CD36 chromo...    37   2.7
AB020688_1(AB020688|pid:none) Homo sapiens mRNA for KIAA0881 pro...    37   2.7
AB093232_1(AB093232|pid:none) Mus musculus premature mRNA for mK...    37   2.7
AF003150_4(AF003150|pid:none) Caenorhabditis elegans cosmid T05E...    36   3.6
CP000013_44(CP000013|pid:none) Borrelia garinii PBi, complete ge...    36   3.6
AL844508_64(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    36   3.6
AE017226_438(AE017226|pid:none) Treponema denticola ATCC 35405, ...    36   3.6
AY496881_3(AY496881|pid:none) Actinobacillus pleuropneumoniae se...    29   4.4
CP001357_2611(CP001357|pid:none) Brachyspira hyodysenteriae WA1,...    36   4.7
(Q54G05) RecName: Full=Putative leucine-rich repeat-containing p...    36   4.7
CR382137_725(CR382137|pid:none) Debaryomyces hansenii strain CBS...    36   4.7
CP000139_3622(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,...    36   4.7
CR936503_1400(CR936503|pid:none) Lactobacillus sakei strain 23K ...    36   4.7
GN102962_1(GN102962|pid:none) Sequence 7743 from Patent WO200903...    35   6.1
BA000028_1411(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    35   6.1
AK148283_1(AK148283|pid:none) Mus musculus B16 F10Y cells cDNA, ...    35   8.0
BX897656_2(BX897656|pid:none) Zebrafish DNA sequence from clone ...    35   8.0
AE016820_717(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    35   8.0
CP000609_236(CP000609|pid:none) Methanococcus maripaludis C5, co...    35   8.0
CP001032_4014(CP001032|pid:none) Opitutus terrae PB90-1, complet...    35   8.0
CR405690_2(CR405690|pid:none) Zebrafish DNA sequence from clone ...    35   8.0
CP001047_264(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ...    35   8.0
BA000028_1145(BA000028|pid:none) Oceanobacillus iheyensis HTE831...    35   8.0

>(Q54CV3) RecName: Full=Coiled-coil domain-containing protein 93
            homolog;
          Length = 639

 Score =  410 bits (1054), Expect = e-113
 Identities = 219/263 (83%), Positives = 223/263 (84%)
 Frame = +2

Query: 716  REETGDLLRMYXXXXQAFNERIIRETEKLDALETPENTKALQALRSLVLLNETLIAQEEL 895
            R+   + L++     QAFNERIIRETEKLDALETPENTKALQALRSLVLLNETLIAQEEL
Sbjct: 364  RQTELEQLQLLVGKKQAFNERIIRETEKLDALETPENTKALQALRSLVLLNETLIAQEEL 423

Query: 896  FKQSCKRQMVEYKQKIEQLLSQDASTQEXXXXXXXXXXXXXXXXXXIGXXXXXXXXXXXX 1075
            FKQSCKRQMVEYKQKIEQLLSQDASTQE                  IG
Sbjct: 424  FKQSCKRQMVEYKQKIEQLLSQDASTQEDLQDSDRQQQIQQAFDSDIGKLKKLKLLLNKK 483

Query: 1076 XRDISLIQRYLDELPSRAELLQYQRQFVELSEQSSSKLTETRQYYTTYNTFEDKKTLLEN 1255
             RDISLIQRYLDELPSRAELLQYQRQFVELSEQSSSKLTETRQYYTTYNTFEDKKTLLEN
Sbjct: 484  NRDISLIQRYLDELPSRAELLQYQRQFVELSEQSSSKLTETRQYYTTYNTFEDKKTLLEN 543

Query: 1256 ELSILNSIQSKYSIAMSSTNNKELFIKSMDQIIDGIQQVLDKSENKWNVEKVRHDTLSDQ 1435
            ELSILNSIQSKYSIAMSSTNNKELFIKSMDQIIDGIQQVLDKSENKWNVEKVRHDTLSDQ
Sbjct: 544  ELSILNSIQSKYSIAMSSTNNKELFIKSMDQIIDGIQQVLDKSENKWNVEKVRHDTLSDQ 603

Query: 1436 YMTLLDQERNYYKLTKDFEEECR 1504
            YMTLLDQERNYYKLTKDFEEECR
Sbjct: 604  YMTLLDQERNYYKLTKDFEEECR 626

 Score =  325 bits (834), Expect = 2e-87
 Identities = 165/165 (100%), Positives = 165/165 (100%)
 Frame = +2

Query: 254 SIFFANDSEDNTSSGDLSSFTKRGTITPGKIANAREGELSQMIDVESEQKYQEIIELLVT 433
           SIFFANDSEDNTSSGDLSSFTKRGTITPGKIANAREGELSQMIDVESEQKYQEIIELLVT
Sbjct: 6   SIFFANDSEDNTSSGDLSSFTKRGTITPGKIANAREGELSQMIDVESEQKYQEIIELLVT 65

Query: 434 GGYFRARISGLSPFDKVVGGMAWSITASNVDVDADLFFQENSNIKQKVSLSEELIKALNR 613
           GGYFRARISGLSPFDKVVGGMAWSITASNVDVDADLFFQENSNIKQKVSLSEELIKALNR
Sbjct: 66  GGYFRARISGLSPFDKVVGGMAWSITASNVDVDADLFFQENSNIKQKVSLSEELIKALNR 125

Query: 614 MKCPFPLQAQHITLLNYITLFPIIRWLITKVIETREETGDLLRMY 748
           MKCPFPLQAQHITLLNYITLFPIIRWLITKVIETREETGDLLRMY
Sbjct: 126 MKCPFPLQAQHITLLNYITLFPIIRWLITKVIETREETGDLLRMY 170

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,829,524,736
Number of extensions: 29847874
Number of successful extensions: 94397
Number of sequences better than 10.0: 53
Number of HSP's gapped: 94246
Number of HSP's successfully gapped: 79
Length of query: 545
Length of database: 1,051,180,864
Length adjustment: 134
Effective length of query: 411
Effective length of database: 617,481,958
Effective search space: 253785084738
Effective search space used: 253785084738
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.58  gvh: 0.30  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.08  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U11964-1 is nuc
VS (DIR, S) 1
VH (FL, L) 8
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0