Contig-U12049-1
Contig ID Contig-U12049-1
Contig update 2002.12.18
Contig sequence
>Contig-U12049-1 (Contig-U12049-1Q) /CSM_Contig/Contig-U12049-1Q.Seq.d
TAATGAAGGTAGTAATAATAATATAGTTGAAGCATCAAAAGAATCTATAG
GTGTAAAATTATTAAAATTAATGGGTGTGAATAAATTAAAGAATGAACCT
ATGGGTCAATTAAAGAGAATTCAATTAGAAAATAAATCAAAAAGAAAGAA
ACAAAGGCAATCAAATAAAATAAATAAAAAGTCTAGACATTCATCATCAT
CATCATCATTGGTTTCATTAGATGGTGTTGAAATACCCTCTGAACTATTA
TCACAGCTTAAAGATGGTGAAGAAATACCTCAATCAATTTTATCAATCAT
TCAAAATACTACTACTAATAATAATAATAATAATAATAATACATTCGATA
ATGGTGATAATGAAGATGTTGATGAAAGTGATGAAAGTGATGATAATGAA
GAGGATGAAACAGGTGATGAAGAAGCTTATAAAAATATACTTTTAAATGA
ACCAAGTAAAAAACTATTAGACATTAGACAAAAGAATAATGTTTATGGTG
TTGGTTATGGACCTTCTGAAGATGTAAAAAATATGCGTTTTCAAAATCAA
AAATCAAATTCAAACCGTGTATCAATGGATTCATCAAAGTCTTCAATCGG
ATCATTTGGATTGGGTGCATTAGAAGATGATGATGACAAANNNNNNNNN-
---------ATATATAAATAATTATTTTATTAATATATAAATAATAAAAT
GGTTATAATAAATAAAAACTTGATCATAATTGATATTTGTTCAAATTTTA
TTTGTAATAAATGTTTTGTCACAAAATGTAGAATTTTTGTATTTCGATCA
ATCTGATAGAAACATAGACTTTGATAAGAATTTAGTTCCTGATAACACTT
TCACCTTTCAATCCAATACTTTTCCAGTATGGGGTCCATTTGGATTGGGT
TTAGATTATTCACTAGGTAGTCAACCAACATTAGATGATACAAATACTTA
TGAATTGATACATAATCAAACCACTTTAATATCATGGATTACAGAAGAAG
ATCCTCTGGTAAATTACCCTGGGCATGGTAATATGTATTTTGATGGCCAT
TATTTTGGCAGTCCCAGTTTTTTCCCAATTGACTATGCGGGATTTGGTAA
TGAAGGATTGGATCATAATTATAAATGGTGTATTCGTTTTGATTTCTTTA
CAATTATCCCCACAATACATCAATCAACCCTTTGTTTCTATTAGTCACTC
TGATGATTTATTCGTTTATGTTAATGGAAGACCTGTATCTGAATATCTTG
GAATTGTAGAATACAGAGATGTTGGATTTCTACTAACAGATTTTGGTGGG
GGTGGTGAGCCAATCCAAACTTCAATCATTAATTGTAATAGAAAATATAG
ACCAAACATTCATTATTTTGAAATTAAATCAGAGTATCCACTAAATTGTG
ATTATTTTGATGATTGTGGTGTTTGTTATGGTGATGGTTCATCATGTAGA
TGTTTTGAAGGTAGTCCACAGTGTCCAACTGATGAATATTTTTGTGAAAA
AGGTATATGTATTGATGAATTTAATTGTCAACATAATGAATTCAATTGTA
CAGAAGAGTATCCTGGAAATTTATGTGTTTCTCAAGAGTGTCATCTTTAT
CAAGGTTGTGTTTCAACTGATATTTCATGTGATGATTCTAATCCCTGCAC
AATAGATGAATGTGATCCTCCTGTTGGGTGCGTAAATACTTTTATTCCAA
ATTGTATTCCATGTGATAGTTCAGCTTGTATTTCATCAAACCCATGTGAA
ATTCAAGAGTGTGATCCTTTTCTTCTAGGCCTTTGTATAGTTAAACCTGT
TAATTGTACTCATATTAACCCTTGTATAGTTGGACAATGTGATATATCAA
ATGGACAATGTGTTTATTCTGAAATTATTGATTGTGGTAGTTCTTCAATT
GAAAACTCAAGTAATCAAGAAAGTTCTAGTGATATTGATATAACAACTGC
TTCAACTTTGGGCTCAACAATTGCTTCAACAATAGGTTCAACTATTGGTT
TGACTTCAACAACAACCACAACAACAACATCGCAAACAACAGGAACACCA
ACAACACCACCACAAACAGTTAGTGAAATCCCAATTTCATTAGCATCAAC
AATATCCACAAGCCCAGTATCTGATGAAGGAACAATTGCTTCAACAATAG
CAACTACCCTTGCTTCAACTATAGCTTCAACATTTGGCTCAACCATATCT
TTGACAGCTGTATCTACTGATGTTTCCTCGACACTAATTTCAACCATTTC
ATCAACTTTATCTTCAACATTAGCAACAACTTTATCTTCAACTCTATCCT
CAACTTTGTCTTCAACATCAGGAGTAACAACATCATCACTACCATATGAT
AAATGCTATAATAAAAAATGTGGAAAAGGAGAAGGTTGTTATAATTTTGA
AAATAATGCCATTTGTCTCAAAACAAATTGTCTATCATGTTATGATTTAA
ATTGTCAATCACAAGGTCTAAAATGTGTATCATTTAAACTGAAAAAAGTC
CAAAAGATTTATGCAATGATTGCTGCGAATATGCTGCAACTTGTTCTCAT
TAAAAATAAACAAAAAAATAATA

Gap gap included
Contig length 2563
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3071598
End point 3069091
Strand (PLUS/MINUS) MINUS
Number of clones 9
Number of EST 17
Link to clone list U12049
List of clone(s)

est1=SHC330F,1,640
est2=AFC328F,641,808
est3=SFJ871F,641,986
est4=SFK881F,655,1207
est5=SFC320F,690,1063
est6=CFI787F,822,1358
est7=SFC116F,980,1226
est8=AFN713F,1239,1759
est9=SFK881Z,1447,2126
est10=CHR879Z,1787,2547
est11=CFI787Z,1819,2549
est12=SFC320Z,1823,2555
est13=SFC116Z,1825,2554
est14=SFJ871Z,1891,2552
est15=SHC330Z,1897,2575
est16=AFN713Z,2138,2569
est17=AFC328Z,2213,2522
Translated Amino Acid sequence
NEGSNNNIVEASKESIGVKLLKLMGVNKLKNEPMGQLKRIQLENKSKRKKQRQSNKINKK
SRHSSSSSSLVSLDGVEIPSELLSQLKDGEEIPQSILSIIQNTTTNNNNNNNNTFDNGDN
EDVDESDESDDNEEDETGDEEAYKNILLNEPSKKLLDIRQKNNVYGVGYGPSEDVKNMRF
QNQKSNSNRVSMDSSKSSIGSFGLGALEDDDDKXXX---

---YINNYFINI*iikwl**ikt*s*lifvqilfvinvlsqnveflyfdqsdrnidfdkn
lvpdntftfqsntfpvwgpfglgldyslgsqptlddtntyelihnqttliswiteedplv
nypghgnmyfdghyfgspsffpidyagfgnegldhnykwcirfdfftiiptihqstlcfy
*sl**firlc*wktci*iswncriqrcwistnrfwwgw*anpnfnh*l**ki*tkhslf*
n*irvstkl*lf**lwcllw*wfim*mf*r*stvsn**ifl*krymy**i*lst**iqly
rrvswkfmcfsrvsslsrlcfn*yfm**f*slhnr*m*sscwvrkyfysklysm**fsly
fikpm*nsrv*sfssrplys*tc*lysy*plyswtm*yikwtmclf*ny*lw*ffn*klk
*srkf**y*ynncfnfglnncfnnrfnywfdfnnnhnnniannrntnntttns**npnfi
sinnihkpsi**rnncfnnsnypcfnysfniwlnhifdsciy*cfldtnfnhfinfifni
snnfifnsilnfvfnirsnniitti**ml**kmwkrrrll*f*k*chlsqnklsiml*fk
lsitrskmcii*tekspkdlcndcceyaatcsh*k*tkk*


Translated Amino Acid sequence (All Frames)
Frame A:
**r****ys*sikriyrckiikingce*ike*tygsikensirk*ikkketkaik*nk*k
v*tfiiiiiigfirwc*ntl*tiita*rw*rntsinfinhskyyy********yir*w**
*rc**k**k****rg*nr**rsl*kytfk*tk*ktirh*tke*clwcwlwtf*rckkyaf
skskikfkpcingfikvfnriiwigcirr***qxxx---

---iyk*lfy*yinnkmviinknliiidicsnficnkcfvtkcrifvfrsi**khrl**e
fss**hfhlsiqyfssmgsiwigfrlftr*stnir*ykyl*idt*snhfnimdyrrrssg
klpwaw*yvf*wplfwqsqffpn*lcgiw**rigs*l*mvysf*flynyphntsinplfl
lvtlmiysfmlmedlylnilel*ntemldfy*qilvgvvsqsklqslivienidqtfiil
klnqsih*iviilmivvfvmvmvhhvdvlkvvhsvqlmnifvkkvyvlmnlivnimnsiv
qksileiyvflksvifikvvfqlifhvmilipaq*mnvilllga*illfqivfhvivqlv
fhqthvkfksvilff*afv*lnllivliltlv*ldnviyqmdnvfilkllivvvlqlktq
vikkvlvili*qllqlwaqqllqq*vqllv*lqqqpqqqhrkqqehqqhhhkqlvksqfh
*hqqypqaqylmkeqllqq*qlpllql*lqhlaqpyl*qlyllmfprh*fqpfhqlylqh
*qqlylqlypqlclqhqe*qhhhyhminaiiknvekekvviilkimpfvskqivyhvmi*
ivnhkv*nvyhln*kkskrfmq*llriccnlfslkinkkii

Frame B:
NEGSNNNIVEASKESIGVKLLKLMGVNKLKNEPMGQLKRIQLENKSKRKKQRQSNKINKK
SRHSSSSSSLVSLDGVEIPSELLSQLKDGEEIPQSILSIIQNTTTNNNNNNNNTFDNGDN
EDVDESDESDDNEEDETGDEEAYKNILLNEPSKKLLDIRQKNNVYGVGYGPSEDVKNMRF
QNQKSNSNRVSMDSSKSSIGSFGLGALEDDDDKXXX---

---YINNYFINI*iikwl**ikt*s*lifvqilfvinvlsqnveflyfdqsdrnidfdkn
lvpdntftfqsntfpvwgpfglgldyslgsqptlddtntyelihnqttliswiteedplv
nypghgnmyfdghyfgspsffpidyagfgnegldhnykwcirfdfftiiptihqstlcfy
*sl**firlc*wktci*iswncriqrcwistnrfwwgw*anpnfnh*l**ki*tkhslf*
n*irvstkl*lf**lwcllw*wfim*mf*r*stvsn**ifl*krymy**i*lst**iqly
rrvswkfmcfsrvsslsrlcfn*yfm**f*slhnr*m*sscwvrkyfysklysm**fsly
fikpm*nsrv*sfssrplys*tc*lysy*plyswtm*yikwtmclf*ny*lw*ffn*klk
*srkf**y*ynncfnfglnncfnnrfnywfdfnnnhnnniannrntnntttns**npnfi
sinnihkpsi**rnncfnnsnypcfnysfniwlnhifdsciy*cfldtnfnhfinfifni
snnfifnsilnfvfnirsnniitti**ml**kmwkrrrll*f*k*chlsqnklsiml*fk
lsitrskmcii*tekspkdlcndcceyaatcsh*k*tkk*

Frame C:
mkvviii*lkhqknl*v*ny*n*wv*in*rmnlwvn*refn*kinqkernkgnqik*iks
ldihhhhhhwfh*mvlkyplnyyhslkmvkkylnqfyqsfkillliiiiiiiihsimvim
kmlmkvmkvmimkrmkqvmkklikiyf*mnqvkny*tldkrimfmvlvmdllkm*kicvf
kiknqiqtvyqwihqslqsdhldwvh*kmmmtxxx---

---i*iiilliyk**ngynk*kldhn*ylfkfyl**mfchkm*nfcisinliet*tliri
*flitlspfnpilfqygvhldwv*iih*vvnqh*miqilmn*yiikpl*yhglqkkilw*
itlgmvicilmaiilavpvfsqltmrdlvmkdwiiiingvfvlislqlspqyinqpfvsi
shsddlfvyvngrpvseylgiveyrdvgflltdfggggepiqtsiincnrkyrpnihyfe
ikseyplncdyfddcgvcygdgsscrcfegspqcptdeyfcekgicidefncqhnefnct
eeypgnlcvsqechlyqgcvstdiscddsnpctidecdppvgcvntfipncipcdssaci
ssnpceiqecdpfllglcivkpvncthinpcivgqcdisngqcvyseiidcgsssienss
nqesssdidittastlgstiastigstigltstttttttsqttgtpttppqtvseipisl
astistspvsdegtiastiattlastiastfgstisltavstdvsstlistisstlsstl
attlsstlsstlsstsgvttsslpydkcynkkcgkgegcynfennaiclktnclscydln
cqsqglkcvsfklkkvqkiyamiaanmlqlvliknkqknn

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12049-1 (Contig-U12049-1Q)
/CSM_Contig/Contig-U12049-1Q.Seq.d
(2573 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12049-1 (Contig-U12049-1Q) /CSM_Contig/Conti... 2553 0.0
Contig-U14016-1 (Contig-U14016-1Q) /CSM_Contig/Conti... 44 8e-04
Contig-U14519-1 (Contig-U14519-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U07921-1 (Contig-U07921-1Q) /CSM_Contig/Conti... 42 0.003
Contig-U14673-1 (Contig-U14673-1Q) /CSM_Contig/Conti... 38 0.046
Contig-U12805-1 (Contig-U12805-1Q) /CSM_Contig/Conti... 38 0.046
Contig-U10146-1 (Contig-U10146-1Q) /CSM_Contig/Conti... 38 0.046
Contig-U09729-1 (Contig-U09729-1Q) /CSM_Contig/Conti... 38 0.046
Contig-U06805-1 (Contig-U06805-1Q) /CSM_Contig/Conti... 38 0.046
Contig-U04365-1 (Contig-U04365-1Q) /CSM_Contig/Conti... 38 0.046

>Contig-U12049-1 (Contig-U12049-1Q) /CSM_Contig/Contig-U12049-1Q.Seq.d
Length = 2573

Score = 2553 bits (1288), Expect = 0.0
Identities = 1288/1288 (100%)
Strand = Plus / Plus


Query: 719 cttgatcataattgatatttgttcaaattttatttgtaataaatgttttgtcacaaaatg 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cttgatcataattgatatttgttcaaattttatttgtaataaatgttttgtcacaaaatg 778


Query: 779 tagaatttttgtatttcgatcaatctgatagaaacatagactttgataagaatttagttc 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tagaatttttgtatttcgatcaatctgatagaaacatagactttgataagaatttagttc 838


Query: 839 ctgataacactttcacctttcaatccaatacttttccagtatggggtccatttggattgg 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ctgataacactttcacctttcaatccaatacttttccagtatggggtccatttggattgg 898


Query: 899 gtttagattattcactaggtagtcaaccaacattagatgatacaaatacttatgaattga 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 gtttagattattcactaggtagtcaaccaacattagatgatacaaatacttatgaattga 958


Query: 959 tacataatcaaaccactttaatatcatggattacagaagaagatcctctggtaaattacc 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 tacataatcaaaccactttaatatcatggattacagaagaagatcctctggtaaattacc 1018


Query: 1019 ctgggcatggtaatatgtattttgatggccattattttggcagtcccagttttttcccaa 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 ctgggcatggtaatatgtattttgatggccattattttggcagtcccagttttttcccaa 1078


Query: 1079 ttgactatgcgggatttggtaatgaaggattggatcataattataaatggtgtattcgtt 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 ttgactatgcgggatttggtaatgaaggattggatcataattataaatggtgtattcgtt 1138


Query: 1139 ttgatttctttacaattatccccacaatacatcaatcaaccctttgtttctattagtcac 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 ttgatttctttacaattatccccacaatacatcaatcaaccctttgtttctattagtcac 1198


Query: 1199 tctgatgatttattcgtttatgttaatggaagacctgtatctgaatatcttggaattgta 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 tctgatgatttattcgtttatgttaatggaagacctgtatctgaatatcttggaattgta 1258


Query: 1259 gaatacagagatgttggatttctactaacagattttggtgggggtggtgagccaatccaa 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 gaatacagagatgttggatttctactaacagattttggtgggggtggtgagccaatccaa 1318


Query: 1319 acttcaatcattaattgtaatagaaaatatagaccaaacattcattattttgaaattaaa 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 acttcaatcattaattgtaatagaaaatatagaccaaacattcattattttgaaattaaa 1378


Query: 1379 tcagagtatccactaaattgtgattattttgatgattgtggtgtttgttatggtgatggt 1438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 tcagagtatccactaaattgtgattattttgatgattgtggtgtttgttatggtgatggt 1438


Query: 1439 tcatcatgtagatgttttgaaggtagtccacagtgtccaactgatgaatatttttgtgaa 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1439 tcatcatgtagatgttttgaaggtagtccacagtgtccaactgatgaatatttttgtgaa 1498


Query: 1499 aaaggtatatgtattgatgaatttaattgtcaacataatgaattcaattgtacagaagag 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1499 aaaggtatatgtattgatgaatttaattgtcaacataatgaattcaattgtacagaagag 1558


Query: 1559 tatcctggaaatttatgtgtttctcaagagtgtcatctttatcaaggttgtgtttcaact 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1559 tatcctggaaatttatgtgtttctcaagagtgtcatctttatcaaggttgtgtttcaact 1618


Query: 1619 gatatttcatgtgatgattctaatccctgcacaatagatgaatgtgatcctcctgttggg 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1619 gatatttcatgtgatgattctaatccctgcacaatagatgaatgtgatcctcctgttggg 1678


Query: 1679 tgcgtaaatacttttattccaaattgtattccatgtgatagttcagcttgtatttcatca 1738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1679 tgcgtaaatacttttattccaaattgtattccatgtgatagttcagcttgtatttcatca 1738


Query: 1739 aacccatgtgaaattcaagagtgtgatccttttcttctaggcctttgtatagttaaacct 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1739 aacccatgtgaaattcaagagtgtgatccttttcttctaggcctttgtatagttaaacct 1798


Query: 1799 gttaattgtactcatattaacccttgtatagttggacaatgtgatatatcaaatggacaa 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1799 gttaattgtactcatattaacccttgtatagttggacaatgtgatatatcaaatggacaa 1858


Query: 1859 tgtgtttattctgaaattattgattgtggtagttcttcaattgaaaactcaagtaatcaa 1918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1859 tgtgtttattctgaaattattgattgtggtagttcttcaattgaaaactcaagtaatcaa 1918


Query: 1919 gaaagttctagtgatattgatataacaactgcttcaactttgggctcaacaattgcttca 1978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1919 gaaagttctagtgatattgatataacaactgcttcaactttgggctcaacaattgcttca 1978


Query: 1979 acaataggttcaactattggtttgactt 2006
||||||||||||||||||||||||||||
Sbjct: 1979 acaataggttcaactattggtttgactt 2006


Score = 965 bits (487), Expect = 0.0
Identities = 487/487 (100%)
Strand = Plus / Plus


Query: 2065 aacagttagtgaaatcccaatttcattagcatcaacaatatccacaagcccagtatctga 2124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2065 aacagttagtgaaatcccaatttcattagcatcaacaatatccacaagcccagtatctga 2124


Query: 2125 tgaaggaacaattgcttcaacaatagcaactacccttgcttcaactatagcttcaacatt 2184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2125 tgaaggaacaattgcttcaacaatagcaactacccttgcttcaactatagcttcaacatt 2184


Query: 2185 tggctcaaccatatctttgacagctgtatctactgatgtttcctcgacactaatttcaac 2244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2185 tggctcaaccatatctttgacagctgtatctactgatgtttcctcgacactaatttcaac 2244


Query: 2245 catttcatcaactttatcttcaacattagcaacaactttatcttcaactctatcctcaac 2304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2245 catttcatcaactttatcttcaacattagcaacaactttatcttcaactctatcctcaac 2304


Query: 2305 tttgtcttcaacatcaggagtaacaacatcatcactaccatatgataaatgctataataa 2364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2305 tttgtcttcaacatcaggagtaacaacatcatcactaccatatgataaatgctataataa 2364


Query: 2365 aaaatgtggaaaaggagaaggttgttataattttgaaaataatgccatttgtctcaaaac 2424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2365 aaaatgtggaaaaggagaaggttgttataattttgaaaataatgccatttgtctcaaaac 2424


Query: 2425 aaattgtctatcatgttatgatttaaattgtcaatcacaaggtctaaaatgtgtatcatt 2484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2425 aaattgtctatcatgttatgatttaaattgtcaatcacaaggtctaaaatgtgtatcatt 2484


Query: 2485 taaactgaaaaaagtccaaaagatttatgcaatgattgctgcgaatatgctgcaacttgt 2544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2485 taaactgaaaaaagtccaaaagatttatgcaatgattgctgcgaatatgctgcaacttgt 2544


Query: 2545 tctcatt 2551
|||||||
Sbjct: 2545 tctcatt 2551


Score = 593 bits (299), Expect = e-169
Identities = 299/299 (100%)
Strand = Plus / Plus


Query: 342 cattcgataatggtgataatgaagatgttgatgaaagtgatgaaagtgatgataatgaag 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cattcgataatggtgataatgaagatgttgatgaaagtgatgaaagtgatgataatgaag 401


Query: 402 aggatgaaacaggtgatgaagaagcttataaaaatatacttttaaatgaaccaagtaaaa 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 aggatgaaacaggtgatgaagaagcttataaaaatatacttttaaatgaaccaagtaaaa 461


Query: 462 aactattagacattagacaaaagaataatgtttatggtgttggttatggaccttctgaag 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aactattagacattagacaaaagaataatgtttatggtgttggttatggaccttctgaag 521


Query: 522 atgtaaaaaatatgcgttttcaaaatcaaaaatcaaattcaaaccgtgtatcaatggatt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 atgtaaaaaatatgcgttttcaaaatcaaaaatcaaattcaaaccgtgtatcaatggatt 581


Query: 582 catcaaagtcttcaatcggatcatttggattgggtgcattagaagatgatgatgacaaa 640
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 catcaaagtcttcaatcggatcatttggattgggtgcattagaagatgatgatgacaaa 640


Score = 254 bits (128), Expect = 4e-67
Identities = 128/128 (100%)
Strand = Plus / Plus


Query: 1 taatgaaggtagtaataataatatagttgaagcatcaaaagaatctataggtgtaaaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 taatgaaggtagtaataataatatagttgaagcatcaaaagaatctataggtgtaaaatt 60


Query: 61 attaaaattaatgggtgtgaataaattaaagaatgaacctatgggtcaattaaagagaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attaaaattaatgggtgtgaataaattaaagaatgaacctatgggtcaattaaagagaat 120


Query: 121 tcaattag 128
||||||||
Sbjct: 121 tcaattag 128


Score = 210 bits (106), Expect = 6e-54
Identities = 106/106 (100%)
Strand = Plus / Plus


Query: 210 tggtttcattagatggtgttgaaataccctctgaactattatcacagcttaaagatggtg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tggtttcattagatggtgttgaaataccctctgaactattatcacagcttaaagatggtg 269


Query: 270 aagaaatacctcaatcaattttatcaatcattcaaaatactactac 315
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aagaaatacctcaatcaattttatcaatcattcaaaatactactac 315


Score = 40.1 bits (20), Expect = 0.012
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 1966 aacaattgcttcaacaatag 1985
||||||||||||||||||||
Sbjct: 2131 aacaattgcttcaacaatag 2150


Score = 40.1 bits (20), Expect = 0.012
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 2131 aacaattgcttcaacaatag 2150
||||||||||||||||||||
Sbjct: 1966 aacaattgcttcaacaatag 1985


>Contig-U14016-1 (Contig-U14016-1Q) /CSM_Contig/Contig-U14016-1Q.Seq.d
Length = 441

Score = 44.1 bits (22), Expect = 8e-04
Identities = 28/30 (93%)
Strand = Plus / Minus


Query: 370 tgatgaaagtgatgaaagtgatgataatga 399
||||||||||||||||| |||||| |||||
Sbjct: 210 tgatgaaagtgatgaaaatgatgaaaatga 181


>Contig-U14519-1 (Contig-U14519-1Q) /CSM_Contig/Contig-U14519-1Q.Seq.d
Length = 1452

Score = 42.1 bits (21), Expect = 0.003
Identities = 27/29 (93%)
Strand = Plus / Plus


Query: 11 agtaataataatatagttgaagcatcaaa 39
|||||||||||||| | ||||||||||||
Sbjct: 313 agtaataataatattgatgaagcatcaaa 341


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,336
Number of Sequences: 6905
Number of extensions: 45336
Number of successful extensions: 4519
Number of sequences better than 10.0: 180
length of query: 2573
length of database: 5,674,871
effective HSP length: 17
effective length of query: 2556
effective length of database: 5,557,486
effective search space: 14204934216
effective search space used: 14204934216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)
dna update 2008.11.28
Homology vs DNA
Query= Contig-U12049-1 (Contig-U12049-1Q) /CSM_Contig/Contig-U12049-1Q.Seq.d
(2573 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ401284) Dictyostelium discoideum cDNA clone:dds22b22, 3' ... 1072 0.0 1
(BJ328423) Dictyostelium discoideum cDNA clone:dda28j03, 5' ... 1027 0.0 1
(BJ399279) Dictyostelium discoideum cDNA clone:dds5o03, 3' e... 957 0.0 2
(BJ402166) Dictyostelium discoideum cDNA clone:dds20n18, 3' ... 938 0.0 2
(BJ375496) Dictyostelium discoideum cDNA clone:ddc18n21, 3' ... 938 0.0 2
(BJ399259) Dictyostelium discoideum cDNA clone:dds5h05, 3' e... 930 0.0 2
(BJ386350) Dictyostelium discoideum cDNA clone:ddc57n20, 3' ... 888 0.0 3
(BJ361825) Dictyostelium discoideum cDNA clone:ddc18n21, 5' ... 672 0.0 2
(BJ390528) Dictyostelium discoideum cDNA clone:dds22b22, 5' ... 971 0.0 1
(BJ345576) Dictyostelium discoideum cDNA clone:dda28j03, 3' ... 662 0.0 2
(BJ392638) Dictyostelium discoideum cDNA clone:dds28l07, 5' ... 210 0.0 4
(BJ387803) Dictyostelium discoideum cDNA clone:dds5h05, 5' e... 686 0.0 1
(BJ341130) Dictyostelium discoideum cDNA clone:dda5h07, 3' e... 482 e-155 2
(BJ389961) Dictyostelium discoideum cDNA clone:dds20n18, 5' ... 533 e-146 1
(BJ387819) Dictyostelium discoideum cDNA clone:dds5o03, 5' e... 353 e-126 2
(BJ324219) Dictyostelium discoideum cDNA clone:dda5h07, 5' e... 172 2e-38 2
(BJ324749) Dictyostelium discoideum cDNA clone:dda7e24, 5' e... 60 7e-05 2
(BJ329990) Dictyostelium discoideum cDNA clone:dda27b02, 5' ... 58 0.002 1
(AB053203) Dictyostelium discoideum psiA mRNA for Psi facor,... 48 0.033 3
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 52 0.11 1
(AU061438) Dictyostelium discoideum slug cDNA, clone SLE256. 52 0.11 1
(BJ391455) Dictyostelium discoideum cDNA clone:dds13p24, 5' ... 52 0.11 1
(BJ391414) Dictyostelium discoideum cDNA clone:dds13c24, 5' ... 52 0.11 1
(BJ391375) Dictyostelium discoideum cDNA clone:dds13f16, 5' ... 52 0.11 1
(BJ391290) Dictyostelium discoideum cDNA clone:dds13c04, 5' ... 52 0.11 1
(BJ391150) Dictyostelium discoideum cDNA clone:dds15g11, 5' ... 52 0.11 1
(BJ391138) Dictyostelium discoideum cDNA clone:dds15b10, 5' ... 52 0.11 1
(BJ391018) Dictyostelium discoideum cDNA clone:dds14n13, 5' ... 52 0.11 1
(BJ390650) Dictyostelium discoideum cDNA clone:dds23a08, 5' ... 52 0.11 1
(BJ390512) Dictyostelium discoideum cDNA clone:dds22o17, 5' ... 52 0.11 1
(BJ390459) Dictyostelium discoideum cDNA clone:dds22b16, 5' ... 52 0.11 1
(BJ390382) Dictyostelium discoideum cDNA clone:dds22o06, 5' ... 52 0.11 1
(BJ390311) Dictyostelium discoideum cDNA clone:dds21o22, 5' ... 52 0.11 1
(BJ389990) Dictyostelium discoideum cDNA clone:dds20e22, 5' ... 52 0.11 1
(BJ389983) Dictyostelium discoideum cDNA clone:dds20d20, 5' ... 52 0.11 1
(BJ389416) Dictyostelium discoideum cDNA clone:dds18m17, 5' ... 52 0.11 1
(BJ389375) Dictyostelium discoideum cDNA clone:dds18c15, 5' ... 52 0.11 1
(BJ389245) Dictyostelium discoideum cDNA clone:dds18g03, 5' ... 52 0.11 1
(BJ389016) Dictyostelium discoideum cDNA clone:dds17k05, 5' ... 52 0.11 1
(BJ388791) Dictyostelium discoideum cDNA clone:dds16b12, 5' ... 52 0.11 1
(BJ388536) Dictyostelium discoideum cDNA clone:dds6d05, 5' e... 52 0.11 1
(BJ388435) Dictyostelium discoideum cDNA clone:dds9d18, 5' e... 52 0.11 1
(BJ388350) Dictyostelium discoideum cDNA clone:dds9j02, 5' e... 52 0.11 1
(BJ388302) Dictyostelium discoideum cDNA clone:dds8l19, 5' e... 52 0.11 1
(BJ388215) Dictyostelium discoideum cDNA clone:dds8p12, 5' e... 52 0.11 1
(BJ388174) Dictyostelium discoideum cDNA clone:dds8c10, 5' e... 52 0.11 1
(BJ388096) Dictyostelium discoideum cDNA clone:dds7l20, 5' e... 52 0.11 1
(BJ388015) Dictyostelium discoideum cDNA clone:dds7m08, 5' e... 52 0.11 1
(BJ387834) Dictyostelium discoideum cDNA clone:dds5f11, 5' e... 52 0.11 1
(BJ387645) Dictyostelium discoideum cDNA clone:dds3p22, 5' e... 52 0.11 1
(BJ387428) Dictyostelium discoideum cDNA clone:dds2d13, 5' e... 52 0.11 1
(BJ387412) Dictyostelium discoideum cDNA clone:dds2j11, 5' e... 52 0.11 1
(BJ387377) Dictyostelium discoideum cDNA clone:dds2j01, 5' e... 52 0.11 1
(BJ387272) Dictyostelium discoideum cDNA clone:dds1a08, 5' e... 52 0.11 1
(BJ387048) Dictyostelium discoideum cDNA clone:dds12i04, 5' ... 52 0.11 1
(BJ387047) Dictyostelium discoideum cDNA clone:dds12i02, 5' ... 52 0.11 1
(BJ387021) Dictyostelium discoideum cDNA clone:dds11o19, 5' ... 52 0.11 1
(BJ386854) Dictyostelium discoideum cDNA clone:dds11b01, 5' ... 52 0.11 1
(BJ363929) Dictyostelium discoideum cDNA clone:ddc29l06, 5' ... 52 0.11 1
(BJ363507) Dictyostelium discoideum cDNA clone:ddc27e02, 5' ... 52 0.11 1
(BJ363444) Dictyostelium discoideum cDNA clone:ddc26n15, 5' ... 52 0.11 1
(BJ363349) Dictyostelium discoideum cDNA clone:ddc26n04, 5' ... 52 0.11 1
(BJ363069) Dictyostelium discoideum cDNA clone:ddc24n24, 5' ... 52 0.11 1
(BJ363055) Dictyostelium discoideum cDNA clone:ddc24g23, 5' ... 52 0.11 1
(BJ363016) Dictyostelium discoideum cDNA clone:ddc24g16, 5' ... 52 0.11 1
(BJ362676) Dictyostelium discoideum cDNA clone:ddc23b06, 5' ... 52 0.11 1
(BJ362415) Dictyostelium discoideum cDNA clone:ddc21m16, 5' ... 52 0.11 1
(BJ362348) Dictyostelium discoideum cDNA clone:ddc21l11, 5' ... 52 0.11 1
(BJ362175) Dictyostelium discoideum cDNA clone:ddc20i17, 5' ... 52 0.11 1
(BJ361975) Dictyostelium discoideum cDNA clone:ddc19g13, 5' ... 52 0.11 1
(BJ361858) Dictyostelium discoideum cDNA clone:ddc19h03, 5' ... 52 0.11 1
(BJ361759) Dictyostelium discoideum cDNA clone:ddc18k14, 5' ... 52 0.11 1
(BJ361758) Dictyostelium discoideum cDNA clone:ddc18k13, 5' ... 52 0.11 1
(BJ361409) Dictyostelium discoideum cDNA clone:ddc17e03, 5' ... 52 0.11 1
(BJ361292) Dictyostelium discoideum cDNA clone:ddc16h18, 5' ... 52 0.11 1
(BJ361279) Dictyostelium discoideum cDNA clone:ddc16d16, 5' ... 52 0.11 1
(BJ361189) Dictyostelium discoideum cDNA clone:ddc16i04, 5' ... 52 0.11 1
(BJ361093) Dictyostelium discoideum cDNA clone:ddc9e23, 5' e... 52 0.11 1
(BJ361009) Dictyostelium discoideum cDNA clone:ddc9d10, 5' e... 52 0.11 1
(BJ360883) Dictyostelium discoideum cDNA clone:ddc8l09, 5' e... 52 0.11 1
(BJ360665) Dictyostelium discoideum cDNA clone:ddc7b07, 5' e... 52 0.11 1
(BJ360346) Dictyostelium discoideum cDNA clone:ddc5m13, 5' e... 52 0.11 1
(BJ360344) Dictyostelium discoideum cDNA clone:ddc5l17, 5' e... 52 0.11 1
(BJ360273) Dictyostelium discoideum cDNA clone:ddc5b09, 5' e... 52 0.11 1
(BJ360258) Dictyostelium discoideum cDNA clone:ddc5n05, 5' e... 52 0.11 1
(BJ359940) Dictyostelium discoideum cDNA clone:ddc3l07, 5' e... 52 0.11 1
(BJ359730) Dictyostelium discoideum cDNA clone:ddc2o04, 5' e... 52 0.11 1
(BJ359610) Dictyostelium discoideum cDNA clone:ddc15h15, 5' ... 52 0.11 1
(BJ359426) Dictyostelium discoideum cDNA clone:ddc14b18, 5' ... 52 0.11 1
(BJ359424) Dictyostelium discoideum cDNA clone:ddc14a18, 5' ... 52 0.11 1
(BJ359286) Dictyostelium discoideum cDNA clone:ddc13p16, 5' ... 52 0.11 1
(BJ359020) Dictyostelium discoideum cDNA clone:ddc12p09, 5' ... 52 0.11 1
(BJ358842) Dictyostelium discoideum cDNA clone:ddc11i16, 5' ... 52 0.11 1
(BJ358687) Dictyostelium discoideum cDNA clone:ddc10l22, 5' ... 52 0.11 1
(BJ358569) Dictyostelium discoideum cDNA clone:ddc10o04, 5' ... 52 0.11 1
(BJ358407) Dictyostelium discoideum cDNA clone:ddc1l11, 5' e... 52 0.11 1
(BJ329687) Dictyostelium discoideum cDNA clone:dda25m24, 5' ... 52 0.11 1
(BJ327426) Dictyostelium discoideum cDNA clone:dda20l10, 5' ... 52 0.11 1
(BJ326817) Dictyostelium discoideum cDNA clone:dda18k01, 5' ... 52 0.11 1
(BJ323811) Dictyostelium discoideum cDNA clone:dda12i11, 5' ... 52 0.11 1

>(BJ401284) Dictyostelium discoideum cDNA clone:dds22b22, 3' end,
single read.
Length = 680

Score = 1072 bits (541), Expect = 0.0
Identities = 541/541 (100%)
Strand = Plus / Minus


Query: 1466 ccacagtgtccaactgatgaatatttttgtgaaaaaggtatatgtattgatgaatttaat 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ccacagtgtccaactgatgaatatttttgtgaaaaaggtatatgtattgatgaatttaat 621


Query: 1526 tgtcaacataatgaattcaattgtacagaagagtatcctggaaatttatgtgtttctcaa 1585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtcaacataatgaattcaattgtacagaagagtatcctggaaatttatgtgtttctcaa 561


Query: 1586 gagtgtcatctttatcaaggttgtgtttcaactgatatttcatgtgatgattctaatccc 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gagtgtcatctttatcaaggttgtgtttcaactgatatttcatgtgatgattctaatccc 501


Query: 1646 tgcacaatagatgaatgtgatcctcctgttgggtgcgtaaatacttttattccaaattgt 1705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgcacaatagatgaatgtgatcctcctgttgggtgcgtaaatacttttattccaaattgt 441


Query: 1706 attccatgtgatagttcagcttgtatttcatcaaacccatgtgaaattcaagagtgtgat 1765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attccatgtgatagttcagcttgtatttcatcaaacccatgtgaaattcaagagtgtgat 381


Query: 1766 ccttttcttctaggcctttgtatagttaaacctgttaattgtactcatattaacccttgt 1825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttttcttctaggcctttgtatagttaaacctgttaattgtactcatattaacccttgt 321


Query: 1826 atagttggacaatgtgatatatcaaatggacaatgtgtttattctgaaattattgattgt 1885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atagttggacaatgtgatatatcaaatggacaatgtgtttattctgaaattattgattgt 261


Query: 1886 ggtagttcttcaattgaaaactcaagtaatcaagaaagttctagtgatattgatataaca 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ggtagttcttcaattgaaaactcaagtaatcaagaaagttctagtgatattgatataaca 201


Query: 1946 actgcttcaactttgggctcaacaattgcttcaacaataggttcaactattggtttgact 2005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 actgcttcaactttgggctcaacaattgcttcaacaataggttcaactattggtttgact 141


Query: 2006 t 2006
|
Sbjct: 140 t 140

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,668,752,198
Number of extensions: 166796693
Number of successful extensions: 14247643
Number of sequences better than 10.0: 193
Length of query: 2573
Length of database: 95,242,211,685
Length adjustment: 25
Effective length of query: 2548
Effective length of database: 97,216,030,006
Effective search space: 247706444455288
Effective search space used: 247706444455288
X1: 11 (21.8 bits)
S2: 23 (46.1 bits)

protein update 2009. 7. 1
Homology vs Protein
Query= Contig-U12049-1 (Contig-U12049-1Q) /CSM_Contig/Contig-U12049-1Q.Seq.d
(2573 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor; 114 1e-27
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 109 6e-24
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 92 3e-21
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor; 102 5e-20
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 81 1e-15
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 88 2e-15
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 87 4e-15
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 72 2e-14
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 84 3e-14
(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 80 4e-13
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 80 4e-13
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor; &AC11568... 72 1e-12
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 70 3e-12
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor; 59 5e-10
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 70 5e-10
AY265357_1(AY265357|pid:none) Homo sapiens glycoprotein receptor... 60 5e-07
AY265358_1(AY265358|pid:none) Homo sapiens glycoprotein receptor... 59 7e-07
AC007556_2(AC007556|pid:none) Homo sapiens BAC clone RP11-18C9 f... 59 7e-07
(P98164) RecName: Full=Low-density lipoprotein receptor-related ... 59 7e-07
(Q54VS2) RecName: Full=Protein psiP; Flags: Precursor; 59 1e-06
(Q55FQ4) RecName: Full=Protein psiB; Flags: Precursor; 57 3e-06
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 56 8e-06
(Q968Z6) RecName: Full=Protein psiA; AltName: Full=Prespore-cell... 44 1e-05
AK137635_1(AK137635|pid:none) Mus musculus adult female vagina c... 51 2e-04
(O88307) RecName: Full=Sortilin-related receptor; AltName: Full=... 51 2e-04
Y12004_1(Y12004|pid:none) M.musculus mRNA for receptor LR11/gp25... 51 2e-04
AK147303_1(AK147303|pid:none) Mus musculus adult male brain UNDE... 51 2e-04
BC093485_1(BC093485|pid:none) Mus musculus corin, mRNA (cDNA clo... 51 2e-04
BC136667_1(BC136667|pid:none) Homo sapiens low density lipoprote... 51 2e-04
AB231861_1(AB231861|pid:none) Homo sapiens KIAA0816 mRNA for low... 51 2e-04
AB084910_1(AB084910|pid:none) Homo sapiens LRP10 mRNA for low de... 51 2e-04
AB384531_1(AB384531|pid:none) Synthetic construct DNA, clone: pF... 51 2e-04
CP000113_6294(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 51 2e-04
(A2ARV4) RecName: Full=Low-density lipoprotein receptor-related ... 50 3e-04
AK295878_1(AK295878|pid:none) Homo sapiens cDNA FLJ50970 complet... 50 4e-04
AB015790_1(AB015790|pid:none) Mus musculus mRNA for LR11, comple... 50 4e-04
(Q8VI56) RecName: Full=Low-density lipoprotein receptor-related ... 50 5e-04
AL691489_1(AL691489|pid:none) Mouse DNA sequence from clone RP23... 50 5e-04
AF247637_1(AF247637|pid:none) Mus musculus LDLR dan mRNA, comple... 50 5e-04
(P98158) RecName: Full=Low-density lipoprotein receptor-related ... 50 5e-04
CP000113_6723(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 50 5e-04
AL805948_1(AL805948|pid:none) Mouse DNA sequence from clone RP23... 50 5e-04
CU151891_1(CU151891|pid:none) Zebrafish DNA sequence from clone ... 50 5e-04
(Q9JI18) RecName: Full=Low-density lipoprotein receptor-related ... 50 5e-04
AY540953_1(AY540953|pid:none) Strongylocentrotus purpuratus prot... 49 7e-04
DQ462703_1(DQ462703|pid:none) Bos taurus low density lipoprotein... 49 0.001
(Q9NZR2) RecName: Full=Low-density lipoprotein receptor-related ... 49 0.001
BC172897_1(BC172897|pid:none) Synthetic construct Homo sapiens c... 49 0.001
AY251285_1(AY251285|pid:none) Rattus norvegicus corin mRNA, comp... 49 0.001
(Q9Y5Q5) RecName: Full=Atrial natriuretic peptide-converting enz... 48 0.002
EU326305_1(EU326305|pid:none) Homo sapiens corin, serine peptida... 48 0.002
DQ103506_1(DQ103506|pid:none) Dermacentor variabilis vitellogeni... 48 0.002
U57753_1(U57753|pid:none) Strongylocentrotus purpuratus SFE1 mRN... 48 0.002
(Q95209) RecName: Full=Sortilin-related receptor; AltName: Full=... 47 0.005
AB299015_1(AB299015|pid:none) Haemaphysalis longicornis mRNA for... 47 0.005
AX647605_1(AX647605|pid:none) Sequence 1797 from Patent EP1270724. 47 0.005
AY262832_1(AY262832|pid:none) Solenopsis invicta vitellogenin re... 47 0.005
BX323857_1(BX323857|pid:none) Mouse DNA sequence from clone RP23... 46 0.006
(Q05793) RecName: Full=Basement membrane-specific heparan sulfat... 46 0.006
AM746676_1800(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 46 0.008
AM502222_19(AM502222|pid:none) Leishmania infantum chromosome 4. 46 0.008
(Q07954) RecName: Full=Prolow-density lipoprotein receptor-relat... 45 0.010
AB209498_1(AB209498|pid:none) Homo sapiens mRNA for low density ... 45 0.010
AB199643_1(AB199643|pid:none) Macaca fascicularis Corin mRNA for... 45 0.010
AF369477_1(AF369477|pid:none) Mus musculus strain 129P3/J lipopr... 45 0.013
(P98157) RecName: Full=Low-density lipoprotein receptor-related ... 45 0.013
A30363(A30363)glycoprotein GP330, renal - rat (fragments) 45 0.013
(Q91ZX7) RecName: Full=Prolow-density lipoprotein receptor-relat... 45 0.013
S25111(S25111;S32554) alpha-2-macroglobulin receptor precursor -... 45 0.013
S28291(S28291)hypothetical protein ZC84.1 - Caenorhabditis elegans 45 0.017
BX004856_1(BX004856|pid:none) Zebrafish DNA sequence from clone ... 45 0.017
BC163556_1(BC163556|pid:none) Danio rerio tenascin C, mRNA (cDNA... 45 0.017
DQ096731_1(DQ096731|pid:none) Danio rerio tenascin-C (TNC) mRNA,... 45 0.017
AE014298_418(AE014298|pid:none) Drosophila melanogaster chromoso... 45 0.017
AE014298_423(AE014298|pid:none) Drosophila melanogaster chromoso... 45 0.017
AE014298_417(AE014298|pid:none) Drosophila melanogaster chromoso... 45 0.017
AE014298_420(AE014298|pid:none) Drosophila melanogaster chromoso... 45 0.017
AL389894_18(AL389894|pid:none) Leishmania major Friedlin chromos... 45 0.017
AL138972_3(AL138972|pid:none) Drosophila melanogaster BAC clone ... 45 0.017
AK297675_1(AK297675|pid:none) Homo sapiens cDNA FLJ56535 complet... 45 0.017
AE014298_419(AE014298|pid:none) Drosophila melanogaster chromoso... 45 0.017
AM502222_18(AM502222|pid:none) Leishmania infantum chromosome 4. 44 0.023
AB199644_1(AB199644|pid:none) Macaca fascicularis Corin mRNA for... 44 0.023
CR760336_1(CR760336|pid:none) Xenopus tropicalis finished cDNA, ... 44 0.023
EF125736_1(EF125736|pid:none) Nyctotherus ovalis hypothetical pr... 44 0.030
AY627686_1(AY627686|pid:none) Didelphis virginiana megalin mRNA,... 44 0.039
AB041857_1(AB041857|pid:none) Ciona intestinalis mRNA for Ci-MET... 44 0.039
CR759822_3(CR759822|pid:none) Zebrafish DNA sequence from clone ... 44 0.039
AL035436_2(AL035436|pid:none) Drosophila melanogaster cosmid clo... 44 0.039
M16152_1(M16152|pid:none) Drosophila melanogaster Notch growth f... 44 0.039
AX282577_1(AX282577|pid:none) Sequence 1 from Patent WO0168677. ... 43 0.051
AB209707_1(AB209707|pid:none) Homo sapiens mRNA for low density ... 43 0.051
AY208911_1(AY208911|pid:none) Homo sapiens v-erb-b2 erythroblast... 43 0.051
AC116963_25(AC116963|pid:none) Dictyostelium discoideum chromoso... 43 0.051
CQ975755_1(CQ975755|pid:none) Sequence 1 from Patent WO2004113377. 43 0.051
AE014297_3999(AE014297|pid:none) Drosophila melanogaster chromos... 43 0.051
AX505114_1(AX505114|pid:none) Sequence 7 from Patent WO0240059. 43 0.051
AK054663_1(AK054663|pid:none) Homo sapiens cDNA FLJ30101 fis, cl... 43 0.051
AK296908_1(AK296908|pid:none) Homo sapiens cDNA FLJ55711 complet... 43 0.051
AF283408_1(AF283408|pid:none) Homo sapiens candidate tumor suppr... 43 0.051
AC068195_1(AC068195|pid:none) Homo sapiens BAC clone RP11-114B24... 43 0.051
EF634346_1(EF634346|pid:none) Lehmannia valentiana matrilin-like... 43 0.051
AY888050_1(AY888050|pid:none) Synthetic construct Homo sapiens c... 43 0.051
(Q55FQ5) RecName: Full=Protein psiS; Flags: Precursor; 36 0.064
AB076350_1(AB076350|pid:none) Homo sapiens KRTAP18.3 mRNA for ke... 43 0.066
AL389894_19(AL389894|pid:none) Leishmania major Friedlin chromos... 43 0.066
X62009_1(X62009|pid:none) Homo sapiens partial mRNA for fibrilli... 43 0.066
AE014297_4001(AE014297|pid:none) Drosophila melanogaster chromos... 43 0.066
U03272_1(U03272|pid:none) Human fibrillin-2 mRNA, complete cds. 43 0.066
AF508960_1(AF508960|pid:none) Xenopus laevis lipoprotein recepto... 43 0.066
(P60369) RecName: Full=Keratin-associated protein 10-3; AltName:... 43 0.066
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 43 0.066
A54105(A54105;S17063;S31101)fibrillin-2 precursor - human 43 0.066
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 43 0.066
AE014297_4000(AE014297|pid:none) Drosophila melanogaster chromos... 43 0.066
EU972808_1(EU972808|pid:none) Zea mays clone 388422 unknown mRNA. 41 0.081
AK295090_1(AK295090|pid:none) Homo sapiens cDNA FLJ50960 complet... 42 0.086
AM746676_2014(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 42 0.086
BX537264_1(BX537264|pid:none) Zebrafish DNA sequence from clone ... 42 0.086
AK302589_1(AK302589|pid:none) Homo sapiens cDNA FLJ51150 complet... 42 0.086
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 42 0.086
AF448145_3(AF448145|pid:none) Myxococcus xanthus che3 chemosenso... 42 0.086
(O88799) RecName: Full=Zonadhesin; Flags: Precursor; &T42215(T4... 42 0.11
T16408(T16408)hypothetical protein F48E3.9 - Caenorhabditis eleg... 42 0.15
BC131611_1(BC131611|pid:none) Homo sapiens keratin associated pr... 42 0.15
AB001327_1(AB001327|pid:none) Halocynthia roretzi mRNA for HrNot... 42 0.15
AB292627_1(AB292627|pid:none) Lethenteron japonicum LjNotchA mRN... 42 0.15
AM494941_25(AM494941|pid:none) Leishmania braziliensis chromosom... 42 0.15
U28735_10(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, ... 42 0.15
AK220196_1(AK220196|pid:none) Mus musculus mRNA for mKIAA4226 pr... 42 0.15
(P60412) RecName: Full=Keratin-associated protein 10-11; AltName... 42 0.15
AF283374_1(AF283374|pid:none) Homo sapiens candidate tumor suppr... 42 0.15
AJ291489_1(AJ291489|pid:none) Paracentrotus lividus mRNA for fib... 42 0.15
EU072820_1(EU072820|pid:none) Drosophila americana isolate IR04.... 42 0.15
AF508961_1(AF508961|pid:none) Xenopus laevis lipoprotein recepto... 41 0.19
BC140725_1(BC140725|pid:none) Homo sapiens keratin associated pr... 41 0.19
EU072824_1(EU072824|pid:none) Drosophila americana isolate IR04.... 41 0.19
T29764(T29764)hypothetical protein T21E3.3 - Caenorhabditis eleg... 41 0.25
AM746676_6052(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 41 0.25
AF258795_1(AF258795|pid:none) Tetrahymena pigmentosa copper-indu... 41 0.25
EU395842_1(EU395842|pid:none) Danio rerio low density lipoprotei... 40 0.33
(Q9DER5) RecName: Full=Teneurin-2; Short=Ten-2; AltName... 40 0.33
Y12539_1(Y12539|pid:none) Branchiostoma floridae mRNA for putati... 40 0.33
(O18735) RecName: Full=Receptor tyrosine-protein kinase erbB-2; ... 40 0.33
AY027889_1(AY027889|pid:none) Aedes aegypti vitellogenin recepto... 40 0.33
AB013074_1(AB013074|pid:none) Cyprinus carpio mRNA for integrin ... 40 0.33
AM746676_3421(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 40 0.33
AK159416_1(AK159416|pid:none) Mus musculus osteoclast-like cell ... 40 0.33
AK149309_1(AK149309|pid:none) Mus musculus adult retina cDNA, RI... 40 0.33
AJ720125_1(AJ720125|pid:none) Gallus gallus mRNA for hypothetica... 40 0.33
AC092156_1(AC092156|pid:none) Homo sapiens BAC clone RP11-326J14... 40 0.33
BC172899_1(BC172899|pid:none) Synthetic construct Homo sapiens c... 40 0.33
(Q8R4Y4) RecName: Full=Stabilin-1; AltName: Full=Fasciclin, EGF-... 40 0.33
AM746676_2058(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 40 0.33
AF483029_1(AF483029|pid:none) Boltenia villosa tenascin-x like p... 40 0.33
AE014297_4006(AE014297|pid:none) Drosophila melanogaster chromos... 40 0.43
(P60409) RecName: Full=Keratin-associated protein 10-7; AltName:... 40 0.43
AB218869_1(AB218869|pid:none) Rhyparobia maderae LpR mRNA for Li... 40 0.43
AJ133651_1(AJ133651|pid:none) Trichoderma harzianum cmp1 gene. 40 0.43
(P60368) RecName: Full=Keratin-associated protein 10-2; AltName:... 40 0.43
Z37983_6(Z37983|pid:none) Caenorhabditis elegans Cosmid B0393, c... 40 0.43
EU596506_1(EU596506|pid:none) Rattus norvegicus tenascin C (Tnc)... 40 0.43
CR352252_1(CR352252|pid:none) Zebrafish DNA sequence from clone ... 40 0.43
U31961_14(U31961|pid:none) Drosophila melanogaster bithorax comp... 40 0.56
DQ369966_1(DQ369966|pid:none) Ciona intestinalis trhombospondin ... 40 0.56
AX380924_1(AX380924|pid:none) Sequence 10 from Patent WO0212341. 40 0.56
TVRTNU(A24562;A61204) protein-tyrosine kinase (EC 2.7.1.112) neu... 40 0.56
AF393158_1(AF393158|pid:none) Rattus norvegicus epidermal growth... 40 0.56
AB363982_1(AB363982|pid:none) Tenebrio molitor mRNA for modular ... 40 0.56
BC061863_1(BC061863|pid:none) Rattus norvegicus v-erb-b2 erythro... 40 0.56
AL034559_42(AL034559|pid:none) Plasmodium falciparum MAL3P7, com... 40 0.56
AL645912_4(AL645912|pid:none) Mouse DNA sequence from clone RP23... 39 0.73
AX250013_1(AX250013|pid:none) Sequence 12 from Patent WO0166747.... 39 0.73
AP008209_2618(AP008209|pid:none) Oryza sativa (japonica cultivar... 39 0.73
FJ664126_1(FJ664126|pid:none) Tetrahymena tropicalis copper-indu... 39 0.73
(Q80YX1) RecName: Full=Tenascin; Short=TN; AltName: Ful... 39 0.73
AF374376_24(AF374376|pid:none) Oikopleura dioica clone BAC clone... 39 0.73
(Q9WTS5) RecName: Full=Teneurin-2; Short=Ten-2; AltName... 39 0.73
(Q9W6V6) RecName: Full=Teneurin-1; Short=Ten-1; AltName... 39 0.73
AB006906_1(AB006906|pid:none) Xenopus laevis mRNA for vitellogen... 39 0.73
AY536890_1(AY536890|pid:none) Theromyzon rude cys-rich cocoon pr... 39 0.73
AC087852_4(AC087852|pid:none) Oryza sativa chromosome 3 BAC OJ11... 39 0.73
AK154429_1(AK154429|pid:none) Mus musculus NOD-derived CD11c +ve... 39 0.73
BX510920_1(BX510920|pid:none) Zebrafish DNA sequence from clone ... 39 0.73
AL732556_3(AL732556|pid:none) Mouse DNA sequence from clone RP24... 39 0.73
AF056116_15(AF056116|pid:none) Fugu rubripes serine/threonine ki... 39 0.73
AL732556_1(AL732556|pid:none) Mouse DNA sequence from clone RP24... 39 0.73
CR926086_1(CR926086|pid:none) Pongo abelii mRNA; cDNA DKFZp459N0... 39 0.95
A47648(A47648)perlecan homolog unc-52, form 1 precursor - Caenor... 39 0.95
AF501273_1(AF501273|pid:none) Entamoeba histolytica clone C1 Gal... 39 0.95
AL591496_16(AL591496|pid:none) Mouse DNA sequence from clone RP2... 39 0.95
C88369(C88369;E88369) protein unc-52 [imported] - Caenorhabditis... 39 0.95
F88369(F88369) protein unc-52 [imported] - Caenorhabditis elegan... 39 0.95
AB076354_1(AB076354|pid:none) Homo sapiens KRTAP18.7 mRNA for ke... 39 0.95
Z93375_7(Z93375|pid:none) Caenorhabditis elegans Cosmid C38C6, c... 39 0.95
AE014297_4009(AE014297|pid:none) Drosophila melanogaster chromos... 39 0.95
AB255883_1(AB255883|pid:none) Rhyparobia maderae VgR mRNA for vi... 39 0.95
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 39 0.95
AY299330_1(AY299330|pid:none) Herdmania curvata ci-meta1-like pr... 39 0.95
(Q61555) RecName: Full=Fibrillin-2; Flags: Precursor; &A57278(A... 39 0.95
AL591496_15(AL591496|pid:none) Mouse DNA sequence from clone RP2... 39 0.95
L14815_1(L14815|pid:none) Entamoeba histolytica HM-1:IMSS galact... 39 0.95
AM746676_9122(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 1.1
AB052948_1(AB052948|pid:none) Homo sapiens mRNA for SREC-3, comp... 39 1.2
(P35953) RecName: Full=Very low-density lipoprotein receptor; ... 39 1.2
AF499438_1(AF499438|pid:none) Caenorhabditis briggsae notch-like... 39 1.2
CR933018_1(CR933018|pid:none) Zebrafish DNA sequence from clone ... 39 1.2
AY540956_1(AY540956|pid:none) Lytechinus variegatus soft fertili... 39 1.2
AK291810_1(AK291810|pid:none) Homo sapiens cDNA FLJ78719 complet... 39 1.2
BC144128_1(BC144128|pid:none) Homo sapiens latent transforming g... 39 1.2
EU239091_1(EU239091|pid:none) Canis lupus familiaris isolate sch... 39 1.2
AF223365_1(AF223365|pid:none) Drosophila melanogaster LDL-relate... 39 1.2
CP001131_1246(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 39 1.2
U73710_1(U73710|pid:none) Entamoeba dispar Gal/GalNAc-inhibitabl... 39 1.2
AY660008_1(AY660008|pid:none) Tetrahymena thermophila strain Inb... 39 1.2
AE013599_1800(AE013599|pid:none) Drosophila melanogaster chromos... 39 1.2
AF308652_1(AF308652|pid:none) Podocoryne carnea integrin beta ch... 38 1.6
BC140783_1(BC140783|pid:none) Homo sapiens odz, odd Oz/ten-m hom... 38 1.6
AK031542_1(AK031542|pid:none) Mus musculus 13 days embryo male t... 38 1.6
AC115680_25(AC115680|pid:none) Dictyostelium discoideum chromoso... 38 1.6
AF100772_1(AF100772|pid:none) Homo sapiens tenascin-M1 (TNM1) mR... 38 1.6
AF501275_1(AF501275|pid:none) Entamoeba histolytica clone C3 Gal... 38 1.6
BC144543_1(BC144543|pid:none) Homo sapiens odz, odd Oz/ten-m hom... 38 1.6
(Q27591) RecName: Full=Integrin beta-nu; Flags: Precursor; &AE0... 38 1.6
AY333070_3(AY333070|pid:none) Drosophila virilis antennapedia (A... 38 1.6
AK129487_1(AK129487|pid:none) Mus musculus mRNA for mKIAA3023 pr... 38 1.6
(P70424) RecName: Full=Receptor tyrosine-protein kinase erbB-2; ... 38 1.6
L22431_1(L22431|pid:none) Human very low density lipoprotein rec... 38 2.1
(Q6V0K7) RecName: Full=Oncoprotein-induced transcript 3 protein;... 38 2.1
AB201472_1(AB201472|pid:none) Bombyx mori LpR2 mRNA for lipophor... 38 2.1
AB201474_1(AB201474|pid:none) Bombyx mori LpR4 mRNA for lipophor... 38 2.1
AJ295695_1(AJ295695|pid:none) Homo sapiens mRNA for stabilin-2 (... 38 2.1
AF159157_1(AF159157|pid:none) Hydra vulgaris head-activator bind... 38 2.1
L33417_1(L33417|pid:none) Mus musculus very low density lipoprot... 38 2.1
AL450467_2(AL450467|pid:none) Human DNA sequence from clone RP11... 38 2.1
(P98155) RecName: Full=Very low-density lipoprotein receptor; ... 38 2.1
AB201473_1(AB201473|pid:none) Bombyx mori LpR3 mRNA for lipophor... 38 2.1
AB052958_1(AB052958|pid:none) Homo sapiens mRNA for FELE-2, comp... 38 2.1
(Q8WWQ8) RecName: Full=Stabilin-2; AltName: Full=Fasciclin, EGF-... 38 2.1
AB208822_1(AB208822|pid:none) Homo sapiens mRNA for Very low-den... 38 2.1
BC120950_1(BC120950|pid:none) Homo sapiens keratin associated pr... 37 2.8
AB177798_1(AB177798|pid:none) Homo sapiens FBN3 gene for fibrill... 37 2.8
AB177799_1(AB177799|pid:none) Homo sapiens FBN3 gene for fibrill... 37 2.8
AL929049_5(AL929049|pid:none) Zebrafish DNA sequence from clone ... 37 2.8
(P60370) RecName: Full=Keratin-associated protein 10-5; AltName:... 37 2.8
AB384635_1(AB384635|pid:none) Synthetic construct DNA, clone: pF... 37 2.8
(Q6DI48) RecName: Full=Delta-like protein A; Short=Delt... 37 2.8
(Q75N90) RecName: Full=Fibrillin-3; Flags: Precursor; &AY165863... 37 2.8
AB076352_1(AB076352|pid:none) Homo sapiens KRTAP18.5 mRNA for ke... 37 2.8
CU458989_1(CU458989|pid:none) Danio rerio cDNA, clone cssl:d0399. 37 2.8
BC052263_1(BC052263|pid:none) Homo sapiens signal peptide, CUB d... 37 2.8
FJ039902_1(FJ039902|pid:none) Triticum aestivum DEP1 (DEP1) mRNA... 37 2.8
T25768(T25768)hypothetical protein F46F11.7 - Caenorhabditis ele... 37 2.8
BC166786_1(BC166786|pid:none) Rattus norvegicus low density lipo... 37 2.8
AK092062_1(AK092062|pid:none) Homo sapiens cDNA FLJ34743 fis, cl... 37 2.8
U88173_9(U88173|pid:none) Caenorhabditis elegans cosmid F46F11, ... 37 2.8
T18649(T18649)hypothetical protein B0024.14 - Caenorhabditis ele... 37 2.8
(Q9WTS4) RecName: Full=Teneurin-1; Short=Ten-1; AltName... 37 2.8
(Q8IX30) RecName: Full=Signal peptide, CUB and EGF-like domain-c... 37 2.8
AF135060_1(AF135060|pid:none) Rattus norvegicus fibrillin-2 mRNA... 37 2.8
AY173044_1(AY173044|pid:none) Oncorhynchus mykiss latent transfo... 37 2.8
L36118_1(L36118|pid:none) Chiloscyllium plagiosum low-density li... 37 2.8
BC117624_1(BC117624|pid:none) Danio rerio delta-like 4 (Drosophi... 37 2.8
A38096(A38096;S19256;S77946;A41059;A40306;B33625;A33625;) perlec... 37 3.6
(Q9W7R4) RecName: Full=Teneurin-3; Short=Ten-3; AltName... 37 3.6
U89335_1(U89335|pid:none) Homo sapiens chromosome 6 notch4 (NOTC... 37 3.6
AB210038_1(AB210038|pid:none) Homo sapiens mRNA for TNC variant ... 37 3.6
X62515_1(X62515|pid:none) H.sapiens mRNA for basement membrane h... 37 3.6
(Q8R4V5) RecName: Full=Oncoprotein-induced transcript 3 protein;... 37 3.6
AL590103_5(AL590103|pid:none) Human DNA sequence from clone RP11... 37 3.6
AM746676_2497(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 37 3.6
(P98160) RecName: Full=Basement membrane-specific heparan sulfat... 37 3.6
(P60413) RecName: Full=Keratin-associated protein 10-12; AltName... 37 3.6
BX927239_21(BX927239|pid:none) Human DNA sequence from clone DAM... 37 3.6
AK295005_1(AK295005|pid:none) Homo sapiens cDNA FLJ61253 complet... 37 3.6
BC084953_1(BC084953|pid:none) Xenopus laevis X-Serrate-1 protein... 37 3.6
AL445795_1(AL445795|pid:none) Homo sapiens (human) Human Heparan... 37 3.6
(P24821) RecName: Full=Tenascin; Short=TN; AltName: Ful... 37 3.6
CR933878_21(CR933878|pid:none) Human DNA sequence from clone DAM... 37 3.6
BC013622_1(BC013622|pid:none) Mus musculus very low density lipo... 37 3.6
AF517106_1(AF517106|pid:none) Mus musculus EF-9 polyadenylation ... 37 3.6
CP000251_2584(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 37 3.6
AL662830_12(AL662830|pid:none) Human DNA sequence from clone XXb... 37 3.6
X56160_1(X56160|pid:none) Human mRNA for tenascin. 37 3.6
(P98156) RecName: Full=Very low-density lipoprotein receptor; ... 37 3.6
AK304015_1(AK304015|pid:none) Homo sapiens cDNA FLJ60213 complet... 37 3.6
FJ664125_1(FJ664125|pid:none) Tetrahymena tropicalis copper-indu... 37 3.6
BX324137_1(BX324137|pid:none) Zebrafish DNA sequence from clone ... 37 3.6
CP001281_1144(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 35 3.8
AF276084_1(AF276084|pid:none) Xenopus laevis LDL receptor-relate... 37 4.7
CT025750_1(CT025750|pid:none) Zebrafish DNA sequence from clone ... 37 4.7
EU974210_1(EU974210|pid:none) Zea mays clone 442907 keratin-asso... 37 4.7
A48825(A48825)Notch homolog Motch protein - mouse (fragment) 37 4.7
QRXLL2(B40388)LDL receptor 2 precursor - African clawed frog 37 4.7
AB077047_1(AB077047|pid:none) Periplaneta americana VgR mRNA for... 37 4.7
DQ091254_1(DQ091254|pid:none) Fenneropenaeus chinensis thrombosp... 37 4.7
A57293(A57293;A60487)latent transforming growth factor beta-bind... 37 4.7
AK300462_1(AK300462|pid:none) Homo sapiens cDNA FLJ55456 complet... 37 4.7
AL773562_2(AL773562|pid:none) Pig DNA sequence from clone PigI-6... 37 4.7
AB304798_1(AB304798|pid:none) Marsupenaeus japonicus mRNA for pu... 37 4.7
AB199645_1(AB199645|pid:none) Macaca fascicularis Corin mRNA for... 37 4.7
AM904777_1(AM904777|pid:none) Ministeria vibrans partial mRNA fo... 37 4.7
EU273942_1(EU273942|pid:none) Amphimedon queenslandica notch mRN... 37 4.7
DQ917570_1(DQ917570|pid:none) Parhyale hawaiensis delta protein ... 37 4.7
CS161046_1(CS161046|pid:none) Sequence 5 from Patent WO2005083126. 36 6.2
AF099154_1(AF099154|pid:none) Canis familiaris von Willebrand fa... 36 6.2
L42229_1(L42229|pid:none) Xenopus laevis X-Delta-1 gene, complet... 36 6.2
AK035388_1(AK035388|pid:none) Mus musculus adult male urinary bl... 36 6.2
AE014296_356(AE014296|pid:none) Drosophila melanogaster chromoso... 36 6.2
AK300806_1(AK300806|pid:none) Homo sapiens cDNA FLJ53207 complet... 36 6.2
(P46023) RecName: Full=G-protein coupled receptor GRL101; Flags:... 36 6.2
AK159646_1(AK159646|pid:none) Mus musculus osteoclast-like cell ... 36 6.2
CP001574_448(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 36 6.2
AF217999_1(AF217999|pid:none) Homo sapiens clone PP213 unknown m... 36 6.2
BC115342_1(BC115342|pid:none) Danio rerio suppression of tumorig... 36 6.2
BC128654_1(BC128654|pid:none) Danio rerio suppression of tumorig... 36 6.2
BC118139_1(BC118139|pid:none) Bos taurus WNT inhibitory factor 1... 36 6.2
AM050637_1(AM050637|pid:none) Blattella germanica mRNA for vitel... 36 6.2
(Q9Y5U5) RecName: Full=Tumor necrosis factor receptor superfamil... 36 6.2
U20217_1(U20217|pid:none) Mus musculus fibrillin-2 mRNA, partial... 36 6.2
CS208045_1(CS208045|pid:none) Sequence 54 from Patent WO20050798... 36 6.2
(Q8K3K1) RecName: Full=Usherin; AltName: Full=Usher syndrome typ... 36 6.2
U66246_1(U66246|pid:none) Canis familiaris von Willebrand factor... 36 6.2
BC161973_1(BC161973|pid:none) Rattus norvegicus fibulin 1, mRNA ... 36 6.2
AL021391_7(AL021391|pid:none) Human DNA sequence from clone RP1-... 36 6.2
AF126110_1(AF126110|pid:none) Homo sapiens fibulin-1 isoform D p... 36 6.2
CS161044_1(CS161044|pid:none) Sequence 3 from Patent WO200508312... 36 6.2
S78040(S78040;S78560;S36440)fibulin, splice form C precursor - m... 36 6.2
EU627175_1(EU627175|pid:none) Tetrahymena rostrata putative Cu-m... 36 6.2
(Q28295) RecName: Full=von Willebrand factor; Short=vWF... 36 6.2
L40459_1(L40459|pid:none) Mus musculus latent transforming growt... 36 6.2
AF489528_1(AF489528|pid:none) Homo sapiens transforming growth f... 36 8.1
DQ917572_1(DQ917572|pid:none) Parhyale hawaiensis notch protein ... 36 8.1
A35626(A35626) transforming growth factor beta-1-binding protein... 36 8.1
D88550(D88550)protein ZC84.6 [imported] - Caenorhabditis elegans 36 8.1
(Q61810) RecName: Full=Latent-transforming growth factor beta-bi... 36 8.1
Z19157_4(Z19157|pid:none) Caenorhabditis elegans Cosmid ZC84, co... 36 8.1
X08030_1(X08030|pid:none) Chicken mRNA fragment for tenascin (cT... 36 8.1
(Q60553) RecName: Full=Receptor tyrosine-protein kinase erbB-2; ... 36 8.1
AK298027_1(AK298027|pid:none) Homo sapiens cDNA FLJ51010 complet... 36 8.1
DQ786775_1(DQ786775|pid:none) Mus musculus FEX2 mRNA, complete c... 36 8.1
AX616325_1(AX616325|pid:none) Sequence 9 from Patent WO02094864.... 36 8.1
AB208801_1(AB208801|pid:none) Homo sapiens mRNA for latent trans... 36 8.1
BC151843_1(BC151843|pid:none) Homo sapiens tenascin C, mRNA (cDN... 36 8.1
AF315555_1(AF315555|pid:none) Caenorhabditis briggsae notch-like... 36 8.1
(P70351) RecName: Full=Histone-lysine N-methyltransferase EZH1; ... 36 8.1
BC172946_1(BC172946|pid:none) Synthetic construct Mus musculus c... 36 8.1
FN357618_12(FN357618|pid:none) Schistosoma mansoni genome sequen... 36 8.1

>(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;
Length = 516

Score = 114 bits (286), Expect(2) = 1e-27
Identities = 74/247 (29%), Positives = 113/247 (45%), Gaps = 6/247 (2%)
Frame = +2

Query: 1166 YINQPFVSISHSDDLFVYVNGRPVSEYLGIVEYRDVGFLLTDFGGG-GEPIQTSIINCNR 1342
Y + + + DD++VY + + + G+ L + G G+ C R
Sbjct: 161 YHGGEYFTFAGDDDVWVYFDNNLLIDLGGLHTSASETVYLDNLGLTIGQSFPFDFFYCER 220

Query: 1343 K-YRPNIHYFEIKSEYPLNCDYFDDCGVCYGDGSSCRCFEGSPQCPTD----EYFCEKGI 1507
Y N++ I + L C +D CGVC G +C CF +C T E C +G
Sbjct: 221 HTYESNLN---IITNLNLTCIEYDACGVCLGKNDTC-CFVN--KCETINRCLEADCNEGT 274

Query: 1508 CIDEFNCQHNEFNCTEEYPGNLCVSQECHLYQGCVSTDISCDDSNPCTIDECDPPVGCVN 1687
F C ++ NC++ G++C + C + GC++ I+CDD N CT D CDP GC++
Sbjct: 275 ---NFQCDYHIKNCSD---GDICSTDGCDIGFGCINLPINCDDGNYCTKDYCDPTYGCLH 328

Query: 1688 TFIPNCIPCDSSACISSNPCEIQECDPFLLGLCIVKPVNCTHINPCIVGQCDISNGQCVY 1867
NC C + CI+ PC CD C+ +NC+ +PC +C NG+C Y
Sbjct: 329 IETANCTECLETGCITVLPCFPVTCDSLNSSHCVASAMNCSDNDPCTSTEC--VNGECTY 386

Query: 1868 SEIIDCG 1888
I CG
Sbjct: 387 EWI--CG 391

Score = 34.3 bits (77), Expect(2) = 1e-27
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Frame = +1

Query: 958 IHNQTTLISWITEEDPLVNYPGHGNMYFDG------HYFGSPSFFPIDYAGFGNEGL--- 1110
IH+Q+T SW E + + + + + + + S SFFPID GF N+ L
Sbjct: 81 IHSQSTFDSWFHEIEGISYAVPYELVLIESKDEPGIYVYTSSSFFPIDGKGFDNKTLYPD 140

Query: 1111 -----DHNYKWCIR 1137
HNY +C++
Sbjct: 141 EITYNGHNYHFCMK 154

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,337,337,416
Number of extensions: 67209827
Number of successful extensions: 171618
Number of sequences better than 10.0: 348
Number of HSP's gapped: 170587
Number of HSP's successfully gapped: 570
Length of query: 857
Length of database: 1,051,180,864
Length adjustment: 137
Effective length of query: 720
Effective length of database: 607,772,281
Effective search space: 437596042320
Effective search space used: 437596042320
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.28 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: Golgi
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for Contig-U12049-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 4
CH (FL, L) 1
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0