| Contig-U12055-1 |
| Contig ID |
Contig-U12055-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
gap included |
| Contig length |
1459 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
384165 |
| End point |
385568 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
9 |
| Number of EST |
10 |
| Link to clone list |
U12055 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.11.28 |
| Homology vs DNA |
Query= Contig-U12055-1 (Contig-U12055-1Q) /CSM_Contig/Contig-U12055-1Q.Seq.d
(1469 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AB023655) Dictyostelium discoideum talB mRNA for talin homo... 1324 0.0 1
(BJ404375) Dictyostelium discoideum cDNA clone:dds28h08, 3' ... 1308 0.0 1
(BJ392621) Dictyostelium discoideum cDNA clone:dds28h08, 5' ... 1150 0.0 1
(AU034310) Dictyostelium discoideum slug cDNA, clone SLC560. 918 0.0 1
(AU034309) Dictyostelium discoideum slug cDNA, clone SLC559. 914 0.0 1
(AU034029) Dictyostelium discoideum slug cDNA, clone SLB823. 892 0.0 1
(AU053252) Dictyostelium discoideum slug cDNA, clone SLI235. 864 0.0 1
(AU035025) Dictyostelium discoideum slug cDNA, clone SLE513. 835 0.0 1
(AU053144) Dictyostelium discoideum slug cDNA, clone SLF810. 478 e-130 1
(AU074765) Dictyostelium discoideum slug cDNA, clone SSL801. 339 2e-88 1
(AU053721) Dictyostelium discoideum slug cDNA, clone SLJ553. 182 3e-41 1
(EK119686) 1092963347964 Global-Ocean-Sampling_GS-31-01-01-1... 60 3e-04 1
(CU640366) Podospora anserina genomic DNA chromosome 2, supe... 56 0.004 1
(X70063) C.tentans Sp38-40.A and Sp38-40.B genes. 56 0.004 1
(AC201282) Strongylocentrotus purpuratus clone R3-16E13, WOR... 54 0.015 1
(DR566122) WS0266.B21_C15 WS-PP-N-A-12 Picea glauca cDNA clo... 52 0.061 1
(EX341572) GQ03011.SP6_O02 GQ030 - Xylem planings - daytime ... 52 0.061 1
(EX341401) GQ03011.B7_O02 GQ030 - Xylem planings - daytime a... 52 0.061 1
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 50 0.24 1
(AC212375) Pongo abelii chromosome UNKNOWN clone CH276-399M2... 50 0.24 1
(DR464651) WS00933.B21_F03 IS-B-N-A-10 Picea engelmannii x P... 50 0.24 1
(FH287554) CHO_OF4201xi09f1.ab1 CHO_OF4 Nicotiana tabacum ge... 38 0.68 2
(AC177975) Strongylocentrotus purpuratus clone R3-3051B24, W... 42 0.85 3
(CR382129) Yarrowia lipolytica chromosome C of strain CLIB12... 48 0.95 1
(AC221323) Bos taurus clone CH240-403J20, WORKING DRAFT SEQU... 48 0.95 1
(DE083705) Oryzias latipes DNA, clone: ola1-185B05.F, genomi... 48 0.95 1
(R05874) ye93c05.r1 Soares fetal liver spleen 1NFLS Homo sap... 48 0.95 1
(BS000107) Pan troglodytes chromosome 22 clone:PTB-020H02, m... 42 1.1 3
(BE164773) RC3-HT0470-160300-017-g02 HT0470 Homo sapiens cDN... 36 1.3 3
(FD462143) LARVQ45TF Haematobia irritans 1st Instar Larvae H... 38 1.6 3
(CP000552) Prochlorococcus marinus str. MIT 9515, complete g... 34 1.7 2
(AL606918) Mouse DNA sequence from clone RP23-327O13 on chro... 36 1.9 2
(AC177187) Strongylocentrotus purpuratus clone R3-4018H1, WO... 42 2.3 4
(FE071697) LV_ES_RA52H18r Litopenaeus vannamei eyestalk cDNA... 34 2.6 2
(EC752766) PPE00003596 Agencourt Biosciences Agen-0020 Non-n... 36 2.6 2
(AC119394) Rattus norvegicus clone CH230-11E24, WORKING DRAF... 40 2.7 3
(M14628) D.discoideum myosin heavy chain gene, complete cds. 36 2.9 3
(AC154039) Mus musculus 10 BAC RP23-282M20 (Roswell Park Can... 46 3.8 1
(AK159072) Mus musculus visual cortex cDNA, RIKEN full-lengt... 46 3.8 1
(EX414689) GQ03619.B7_G03 GQ036 - Shoot tip - Active growth ... 46 3.8 1
(AC201504) Strongylocentrotus purpuratus clone R3-3079A10, W... 40 6.2 3
(AC216513) Pteropus vampyrus clone CH279-408K7, WORKING DRAF... 32 7.0 2
(AC179510) Strongylocentrotus purpuratus clone R3-64P18, WOR... 42 7.0 4
(CB403461) OSTR008B11_1 AD-wrmcDNA Caenorhabditis elegans cD... 38 7.5 2
(CB384724) OSTF009B1_1 AD-wrmcDNA Caenorhabditis elegans cDN... 38 7.7 2
(C70175) Caenorhabditis elegans cDNA clone yk384a3 : 5' end,... 38 7.8 2
(C70161) Caenorhabditis elegans cDNA clone yk383h1 : 5' end,... 38 7.8 2
(DY948871) CHPY4581.b1_J18.ab1 CHP(XYZ) plains sunflower Hel... 34 9.3 2
(DY941236) CHPX9058.b1_C10.ab1 CHP(XYZ) plains sunflower Hel... 34 9.3 2
(EL485942) CHUM7676.b1_H24.ab1 CHU(LMS) puzzle sunflower Hel... 34 9.4 2
(EL481883) CHUM3888.b1_O11.ab1 CHU(LMS) puzzle sunflower Hel... 34 9.4 2
(CT746307) Paramecium tetraurelia 3-PRIME EST from clone LK0... 32 9.7 2
(AC179777) Strongylocentrotus purpuratus clone R3-1015N09, W... 40 9.9 5
>(AB023655) Dictyostelium discoideum talB mRNA for talin homologue,
complete cds.
Length = 7845
Score = 1324 bits (668), Expect = 0.0
Identities = 668/668 (100%)
Strand = Plus / Plus
Query: 600 aattcacaattggctcaagccgctaaacaagtttcaaatgccacagctgcattggtagaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7144 aattcacaattggctcaagccgctaaacaagtttcaaatgccacagctgcattggtagaa 7203
Query: 660 gccgccaaacaagtcaatgaagaaccagaggttgaattcgatactactaacttatcaaac 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7204 gccgccaaacaagtcaatgaagaaccagaggttgaattcgatactactaacttatcaaac 7263
Query: 720 gcccaaatcatctccaaggaaatggatcaacaaattcaaatcttgaaattaaagaaagaa 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7264 gcccaaatcatctccaaggaaatggatcaacaaattcaaatcttgaaattaaagaaagaa 7323
Query: 780 ctcgaacaagccgaaaagaaattattctcaatcagaaagaaagagtacagtgatcaaact 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7324 ctcgaacaagccgaaaagaaattattctcaatcagaaagaaagagtacagtgatcaaact 7383
Query: 840 ggtaatccatcaccagcaaaagactctgataataaaccaaccacttcaatctctgttggt 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7384 ggtaatccatcaccagcaaaagactctgataataaaccaaccacttcaatctctgttggt 7443
Query: 900 atcacaccaaccaagagaacaactcaagcttcaccaccatcaccaccattaactccaact 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7444 atcacaccaaccaagagaacaactcaagcttcaccaccatcaccaccattaactccaact 7503
Query: 960 caacaagccgctggcaccccaactttaccaccaagaccattaatgaagaaaccagctcca 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7504 caacaagccgctggcaccccaactttaccaccaagaccattaatgaagaaaccagctcca 7563
Query: 1020 tctcaagccccatcttcaccagtcgctccagtttctgctccagtttcaaaaccatcacca 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7564 tctcaagccccatcttcaccagtcgctccagtttctgctccagtttcaaaaccatcacca 7623
Query: 1080 aaaccagcaccaaaaccagctgctccaactgctgccgctccaaataaaacttataccctt 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7624 aaaccagcaccaaaaccagctgctccaactgctgccgctccaaataaaacttataccctt 7683
Query: 1140 gaagaattaaaaaagaaaccagcaaacattgatcatagtaatttagaaatttatctttcc 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7684 gaagaattaaaaaagaaaccagcaaacattgatcatagtaatttagaaatttatctttcc 7743
Query: 1200 gatgaagaatttaaagctgtattcaattgtgaacgttctgaattagctgctatgccaacc 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7744 gatgaagaatttaaagctgtattcaattgtgaacgttctgaattagctgctatgccaacc 7803
Query: 1260 tggaagag 1267
||||||||
Sbjct: 7804 tggaagag 7811
Score = 1132 bits (571), Expect = 0.0
Identities = 577/579 (99%)
Strand = Plus / Plus
Query: 2 tttagattctgcaactttgaatgctgccattggtttacttgaaaacactgcaccagtcgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4821 tttagattctgcaactttgaatgctgccattggtttacttgaaaacactgcaccagtcgg 4880
Query: 62 taaaaccgcccaagtttgtcaaaaggaattggttgatatcagtagagaattggctacctc 121
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4881 taaaaccgcccaagtttgtcaagaggaattggttgatatcagtagagaattggctacctc 4940
Query: 122 aatgaaaactttcttggctgcaccaaaacaagatccaaccaatttaggtcaatcagctaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4941 aatgaaaactttcttggctgcaccaaaacaagatccaaccaatttaggtcaatcagctaa 5000
Query: 182 agatactgcaaacattcttccaaagattgtaaatatcagcaaacaattagcctcactcac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5001 agatactgcaaacattcttccaaagattgtaaatatcagcaaacaattagcctcactcac 5060
Query: 242 caccaatcctgatattaaacaaactcaattactcttgagtaagaaattggctgacaatat 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5061 caccaatcctgatattaaacaaactcaattactcttgagtaagaaattggctgacaatat 5120
Query: 302 gttagagttaatgattagtgccaagagtggtgatgttagtgatagtaaacaagcattcaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5121 gttagagttaatgattagtgccaagagtggtgatgttagtgatagtaaacaagcattcaa 5180
Query: 362 tgcctctcaatcaatcgctgatattttaacctctgtcaagggtggtgttatgcaatctcg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5181 tgcctctcaatcaatcgctgatattttaacctctgtcaagggtggtgttatgcaatctcg 5240
Query: 422 tgattgtgatgaatccattcaaattattggtaaatctaaagaaaaccttcaaaaaccagc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5241 tgattgtgatgaatccattcaaattattggtaaatctaaagaaaaccttcaaaaaccagc 5300
Query: 482 caatgatactcatggtaagacctatcaacaatatcgtgatgaaatgactgaagtcgctaa 541
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5301 caatgatactcatggtaagacctatcaacaatatcgtgatgaaatgactgaaatcgctaa 5360
Query: 542 acaattggctttgggtgtatcacaattagcaaattctgc 580
|||||||||||||||||||||||||||||||||||||||
Sbjct: 5361 acaattggctttgggtgtatcacaattagcaaattctgc 5399
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,436,270,177
Number of extensions: 84296563
Number of successful extensions: 6550875
Number of sequences better than 10.0: 54
Length of query: 1469
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1445
Effective length of database: 97,308,875,965
Effective search space: 140611325769425
Effective search space used: 140611325769425
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7. 1 |
| Homology vs Protein |
Query= Contig-U12055-1 (Contig-U12055-1Q) /CSM_Contig/Contig-U12055-1Q.Seq.d
(1469 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54K81) RecName: Full=Talin-B; 367 e-100
AB023655_1(AB023655|pid:none) Dictyostelium discoideum talB mRNA... 367 e-100
(P54633) RecName: Full=Talin-A; AltName: Full=Filopodin; 87 2e-15
A57036(A57036)talin - slime mold (Dictyostelium discoideum) 87 2e-15
U88311_9(U88311|pid:none) Caenorhabditis elegans cosmid C10H11, ... 54 1e-05
BC135895_1(BC135895|pid:none) Xenopus tropicalis hypothetical pr... 48 8e-04
AJ427856_1(AJ427856|pid:none) Dictyostelium discoideum ORF encod... 46 0.003
(Q8WQ85) RecName: Full=Villidin; 46 0.003
BC079896_1(BC079896|pid:none) Mus musculus talin 2, mRNA (cDNA c... 45 0.009
AF118397_1(AF118397|pid:none) Entamoeba histolytica actin-bindin... 45 0.009
AK165499_1(AK165499|pid:none) Mus musculus adult male kidney cDN... 45 0.009
AE014296_486(AE014296|pid:none) Drosophila melanogaster chromoso... 44 0.011
AE014296_485(AE014296|pid:none) Drosophila melanogaster chromoso... 44 0.011
AM942759_248(AM942759|pid:none) Proteus mirabilis strain HI4320,... 44 0.011
BT031169_1(BT031169|pid:none) Drosophila melanogaster SD07506 fu... 44 0.011
AY058783_1(AY058783|pid:none) Drosophila melanogaster SD07766 fu... 44 0.011
(Q9Y4G6) RecName: Full=Talin-2; 44 0.020
AK161114_1(AK161114|pid:none) Mus musculus 10 days neonate skin ... 44 0.020
BC004055_1(BC004055|pid:none) Mus musculus supervillin, mRNA (cD... 44 0.020
BC052516_1(BC052516|pid:none) Mus musculus supervillin, mRNA (cD... 44 0.020
E84845(E84845)probable villin 2 [imported] - Arabidopsis thaliana 44 0.020
AF402000_1(AF402000|pid:none) Homo sapiens talin 2 mRNA, complet... 44 0.020
AF081202_1(AF081202|pid:none) Arabidopsis thaliana villin 2 (VLN... 44 0.020
(Q8K4L3) RecName: Full=Supervillin; AltName: Full=Archvillin; Al... 44 0.020
AB002318_1(AB002318|pid:none) Human mRNA for KIAA0320 gene, part... 44 0.020
BC054960_1(BC054960|pid:none) Xenopus laevis villin 1, mRNA (cDN... 43 0.033
CP000702_542(CP000702|pid:none) Thermotoga petrophila RKU-1, com... 42 0.044
CP000969_556(CP000969|pid:none) Thermotoga sp. RQ2, complete gen... 42 0.044
DQ227765_1(DQ227765|pid:none) Danio rerio supervillin (svil) mRN... 42 0.057
BC055667_1(BC055667|pid:none) Danio rerio supervillin, mRNA (cDN... 42 0.057
AJ243530_2(AJ243530|pid:none) Streptococcus dysgalactiae subsp. ... 42 0.074
AJ243529_2(AJ243529|pid:none) Streptococcus dysgalactiae subsp. ... 41 0.097
DQ515930_1(DQ515930|pid:none) Bombyx mori strain NB F-actin bund... 41 0.097
AB028950_1(AB028950|pid:none) Homo sapiens mRNA for KIAA1027 pro... 41 0.13
AL732506_33(AL732506|pid:none) Mouse DNA sequence from clone RP2... 41 0.13
(P54939) RecName: Full=Talin-1; &AY150847_1(AY150847|pid:none) 41 0.13
AK122420_1(AK122420|pid:none) Mus musculus mRNA for mKIAA1027 pr... 41 0.13
AF051850_1(AF051850|pid:none) Homo sapiens supervillin mRNA, com... 41 0.13
AL158167_3(AL158167|pid:none) Human DNA sequence from clone RP11... 41 0.13
AK304720_1(AK304720|pid:none) Homo sapiens cDNA FLJ53284 complet... 41 0.13
BC042923_1(BC042923|pid:none) Homo sapiens talin 1, mRNA (cDNA c... 41 0.13
BC092440_1(BC092440|pid:none) Homo sapiens supervillin, mRNA (cD... 41 0.13
AL133410_6(AL133410|pid:none) Human DNA sequence from clone RP11... 41 0.13
AK304799_1(AK304799|pid:none) Homo sapiens cDNA FLJ53285 complet... 41 0.13
AL158167_2(AL158167|pid:none) Human DNA sequence from clone RP11... 41 0.13
(Q9Y490) RecName: Full=Talin-1; &AB384085_1(AB384085|pid:none) 41 0.13
(P26039) RecName: Full=Talin-1; &S11661(S11661) &X56123_1(X5612... 41 0.13
BC113265_1(BC113265|pid:none) Bos taurus supervillin, mRNA (cDNA... 41 0.13
AF078828_1(AF078828|pid:none) Homo sapiens talin mRNA, complete ... 40 0.17
AF177198_1(AF177198|pid:none) Homo sapiens talin mRNA, complete ... 40 0.17
BC074148_1(BC074148|pid:none) Xenopus laevis similar to villin, ... 40 0.22
BC044966_1(BC044966|pid:none) Xenopus laevis similar to villin, ... 40 0.22
BC073251_1(BC073251|pid:none) Xenopus laevis MGC80597 protein, m... 40 0.28
AY380816_1(AY380816|pid:none) Mustela putorius furo smooth muscl... 39 0.37
AL137080_26(AL137080|pid:none) Arabidopsis thaliana DNA chromoso... 39 0.37
AK318626_1(AK318626|pid:none) Arabidopsis thaliana AT3G57410 mRN... 39 0.37
(P36418) RecName: Full=Protovillin; AltName: Full=100 kDa actin-... 39 0.37
H84701(H84701)probable villin [imported] - Arabidopsis thaliana 39 0.37
AK118185_1(AK118185|pid:none) Arabidopsis thaliana At2g29890 mRN... 39 0.37
(O81643) RecName: Full=Villin-1; &AC007113_2(AC007113|pid:none) 39 0.37
(O81645) RecName: Full=Villin-3; &AF081203_1(AF081203|pid:none)... 39 0.37
AJ577853_1(AJ577853|pid:none) Nicotiana tabacum partial mRNA for... 39 0.48
CP000930_214(CP000930|pid:none) Heliobacterium modesticaldum Ice... 39 0.48
BC129018_1(BC129018|pid:none) Xenopus tropicalis supervillin, mR... 39 0.63
CP000662_160(CP000662|pid:none) Rhodobacter sphaeroides ATCC 170... 39 0.63
CP000725_60(CP000725|pid:none) Streptococcus gordonii str. Chall... 39 0.63
AE005176_882(AE005176|pid:none) Lactococcus lactis subsp. lactis... 39 0.63
CP001638_604(CP001638|pid:none) Geobacillus sp. WCH70, complete ... 38 0.82
AL834195_1(AL834195|pid:none) Homo sapiens mRNA; cDNA DKFZp761F1... 38 0.82
DQ413176_1(DQ413176|pid:none) Homo sapiens actin-binding LIM pro... 38 0.82
AP008209_1498(AP008209|pid:none) Oryza sativa (japonica cultivar... 38 0.82
AB058711_1(AB058711|pid:none) Homo sapiens mRNA for KIAA1808 pro... 38 0.82
BC122567_1(BC122567|pid:none) Homo sapiens actin binding LIM pro... 38 0.82
DQ413175_1(DQ413175|pid:none) Mus musculus actin-binding LIM pro... 38 0.82
BC045214_1(BC045214|pid:none) Xenopus laevis similar to villin 1... 38 0.82
DQ413177_1(DQ413177|pid:none) Homo sapiens actin-binding LIM pro... 38 0.82
AK154494_1(AK154494|pid:none) Mus musculus NOD-derived CD11c +ve... 38 0.82
AJ703893_1(AJ703893|pid:none) Rattus norvegicus mRNA for actin b... 38 0.82
AK094798_1(AK094798|pid:none) Homo sapiens cDNA FLJ37479 fis, cl... 38 0.82
AJ748603_1(AJ748603|pid:none) Mus musculus mRNA for actin bindin... 38 0.82
AF088901_1(AF088901|pid:none) Lilium longiflorum actin bundling ... 38 1.1
AK154851_1(AK154851|pid:none) Mus musculus NOD-derived CD11c +ve... 38 1.1
BC074679_1(BC074679|pid:none) Xenopus tropicalis villin 1, mRNA ... 37 1.4
CP000568_2776(CP000568|pid:none) Clostridium thermocellum ATCC 2... 37 1.4
AK173040_1(AK173040|pid:none) Mus musculus mRNA for mKIAA0843 pr... 37 1.4
AM392844_1(AM392844|pid:none) Synthetic construct Mus musculus c... 37 1.4
BC155652_1(BC155652|pid:none) Danio rerio zgc:172321, mRNA (cDNA... 37 1.4
AM393116_1(AM393116|pid:none) Synthetic construct Homo sapiens c... 37 1.4
AP009389_2588(AP009389|pid:none) Pelotomaculum thermopropionicum... 37 1.4
BX957309_6(BX957309|pid:none) Zebrafish DNA sequence from clone ... 37 1.4
AE016795_1667(AE016795|pid:none) Vibrio vulnificus CMCP6 chromos... 37 1.4
AM393284_1(AM393284|pid:none) Synthetic construct Homo sapiens c... 37 1.8
CP001334_86(CP001334|pid:none) Micromonas sp. RCC299 chromosome ... 37 1.8
AE015451_193(AE015451|pid:none) Pseudomonas putida KT2440 comple... 37 1.8
DQ413174_1(DQ413174|pid:none) Homo sapiens actin-binding LIM pro... 37 1.8
CP000712_213(CP000712|pid:none) Pseudomonas putida F1, complete ... 37 1.8
AB075881_1(AB075881|pid:none) Homo sapiens mRNA for putative pro... 37 1.8
AM393524_1(AM393524|pid:none) Synthetic construct Homo sapiens c... 37 1.8
T47237(T47237) myosin II heavy chain [imported] - Naegleria fowl... 37 1.8
AM392595_1(AM392595|pid:none) Synthetic construct Homo sapiens c... 37 1.8
AM393563_1(AM393563|pid:none) Synthetic construct Homo sapiens c... 37 1.8
(O94929) RecName: Full=Actin-binding LIM protein 3; AltName: Ful... 37 1.8
CR860826_1(CR860826|pid:none) Pongo abelii mRNA; cDNA DKFZp469A2... 37 1.8
AM393655_1(AM393655|pid:none) Synthetic construct Homo sapiens c... 37 1.8
AM393559_1(AM393559|pid:none) Synthetic construct Homo sapiens c... 37 1.8
AM393554_1(AM393554|pid:none) Synthetic construct Homo sapiens c... 37 1.8
BA000035_394(BA000035|pid:none) Corynebacterium efficiens YS-314... 37 1.8
BC142519_1(BC142519|pid:none) Bos taurus actin binding LIM prote... 37 1.8
AM392930_1(AM392930|pid:none) Synthetic construct Homo sapiens c... 37 1.8
AM393401_1(AM393401|pid:none) Synthetic construct Homo sapiens c... 37 1.8
AM392998_1(AM392998|pid:none) Synthetic construct Homo sapiens c... 37 1.8
BC111730_1(BC111730|pid:none) Homo sapiens advillin, mRNA (cDNA ... 37 2.4
BC081247_1(BC081247|pid:none) Xenopus laevis MGC86227 protein, m... 37 2.4
(O75366) RecName: Full=Advillin; AltName: Full=p92; &AK314362_1... 37 2.4
CP000764_3549(CP000764|pid:none) Bacillus cereus subsp. cytotoxi... 37 2.4
CP000487_1248(CP000487|pid:none) Campylobacter fetus subsp. fetu... 37 2.4
EU334660_1(EU334660|pid:none) Strongylocentrotus purpuratus vill... 37 2.4
CP000487_185(CP000487|pid:none) Campylobacter fetus subsp. fetus... 37 2.4
AF041449_1(AF041449|pid:none) Homo sapiens advillin mRNA, comple... 37 2.4
CP000487_1563(CP000487|pid:none) Campylobacter fetus subsp. fetu... 37 2.4
AM392963_1(AM392963|pid:none) Synthetic construct Homo sapiens c... 36 3.1
AF031641_1(AF031641|pid:none) Halobacterium salinarum methyl-acc... 36 3.1
BT021858_1(BT021858|pid:none) Bos taurus erythrocyte membrane pr... 36 3.1
CP000749_1446(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 36 3.1
DQ453501_1(DQ453501|pid:none) Heliocidaris erythrogramma advilli... 36 3.1
AE004437_1168(AE004437|pid:none) Halobacterium sp. NRC-1, comple... 36 3.1
CP000828_5762(CP000828|pid:none) Acaryochloris marina MBIC11017,... 36 3.1
FM992691_467(FM992691|pid:none) Candida dubliniensis CD36 chromo... 36 4.1
CP001336_3259(CP001336|pid:none) Desulfitobacterium hafniense DC... 36 4.1
CR940348_677(CR940348|pid:none) Theileria annulata strain Ankara... 36 4.1
AM393099_1(AM393099|pid:none) Synthetic construct Homo sapiens c... 36 4.1
CP001219_2546(CP001219|pid:none) Acidithiobacillus ferrooxidans ... 36 4.1
AM393722_1(AM393722|pid:none) Synthetic construct Homo sapiens c... 36 4.1
AJ545046_1(AJ545046|pid:none) Mycoplasma hominis vmp gene for va... 36 4.1
CP001132_2247(CP001132|pid:none) Acidithiobacillus ferrooxidans ... 36 4.1
(O15195) RecName: Full=Villin-like protein; 35 5.3
L01992_1(L01992|pid:none) Saccharomyces cerevisiae myosin-like p... 35 5.3
AE017226_1547(AE017226|pid:none) Treponema denticola ATCC 35405,... 35 5.3
BC022664_1(BC022664|pid:none) Mus musculus villin-like, mRNA (cD... 35 5.3
AP008971_144(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 35 5.3
CP001338_924(CP001338|pid:none) Candidatus Methanosphaerula palu... 35 5.3
(Q91YD6) RecName: Full=Villin-like protein; AltName: Full=EF-6; ... 35 5.3
BC004300_1(BC004300|pid:none) Homo sapiens villin-like, mRNA (cD... 35 5.3
BC000243_1(BC000243|pid:none) Homo sapiens villin-like, mRNA (cD... 35 5.3
BC021808_1(BC021808|pid:none) Mus musculus villin-like, mRNA (cD... 35 5.3
CP000494_7053(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 35 5.3
JC5708(JC5708)villin-like protein - human 35 5.3
BT055016_1(BT055016|pid:none) Zea mays full-length cDNA clone ZM... 35 7.0
AK158744_1(AK158744|pid:none) Mus musculus visual cortex cDNA, R... 35 7.0
AK091581_1(AK091581|pid:none) Homo sapiens cDNA FLJ34262 fis, cl... 35 7.0
CR861194_1(CR861194|pid:none) Pongo abelii mRNA; cDNA DKFZp459C1... 35 7.0
AK055842_1(AK055842|pid:none) Homo sapiens cDNA FLJ31280 fis, cl... 35 7.0
AF079846_1(AF079846|pid:none) Mus musculus dematin 48 kDa subuni... 35 7.0
(Q9WV69) RecName: Full=Dematin; AltName: Full=Erythrocyte membra... 35 7.0
AK149301_1(AK149301|pid:none) Mus musculus adult retina cDNA, RI... 35 7.0
BT066840_1(BT066840|pid:none) Zea mays full-length cDNA clone ZM... 35 7.0
CP000792_621(CP000792|pid:none) Campylobacter concisus 13826, co... 35 7.0
I39062(I39062) dematin 52K chain - human &U28389_1(U28389|pid:n... 35 7.0
AK295452_1(AK295452|pid:none) Homo sapiens cDNA FLJ59528 complet... 35 7.0
AK162866_1(AK162866|pid:none) Mus musculus adult male hypothalam... 35 7.0
(O65570) RecName: Full=Villin-4; &AK117296_1(AK117296|pid:none)... 35 9.1
AP009384_719(AP009384|pid:none) Azorhizobium caulinodans ORS 571... 35 9.1
AB030647_1(AB030647|pid:none) Mus musculus mRNA for nuclear memb... 35 9.1
BC129372_1(BC129372|pid:none) Danio rerio zgc:158673, mRNA (cDNA... 35 9.1
A14103_1(A14103|pid:none) H.sapiens mRNA for villin. &X04657_1(... 35 9.1
(P09327) RecName: Full=Villin-1; 35 9.1
A07400_1(A07400|pid:none) H.sapiens DNA for villin. &A31642(A31... 35 9.1
AK300965_1(AK300965|pid:none) Homo sapiens cDNA FLJ57609 complet... 35 9.1
CP000813_2743(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 35 9.1
FM992691_625(FM992691|pid:none) Candida dubliniensis CD36 chromo... 35 9.1
BC015267_1(BC015267|pid:none) Mus musculus villin 1, mRNA (cDNA ... 35 9.1
X93464_1(X93464|pid:none) Streptococcus dysgalactiae subsp. equi... 35 9.1
AK313709_1(AK313709|pid:none) Homo sapiens cDNA, FLJ94302, highl... 35 9.1
BC042415_1(BC042415|pid:none) Mus musculus uveal autoantigen wit... 35 9.1
BC171566_1(BC171566|pid:none) Danio rerio cDNA clone MGC:198293 ... 35 9.1
CP000605_1515(CP000605|pid:none) Bifidobacterium longum DJO10A, ... 35 9.1
CR457461_4(CR457461|pid:none) Zebrafish DNA sequence from clone ... 35 9.1
AP009256_466(AP009256|pid:none) Bifidobacterium adolescentis ATC... 35 9.1
BT041812_1(BT041812|pid:none) Zea mays full-length cDNA clone ZM... 35 9.1
>(Q54K81) RecName: Full=Talin-B;
Length = 2614
Score = 367 bits (943), Expect = e-100
Identities = 202/258 (78%), Positives = 218/258 (84%), Gaps = 12/258 (4%)
Frame = +3
Query: 3 LDSATLNAAIGLLENTAPVGKTAQVCQKELVDISRELATSMKTFLAAPKQDPTNLGQSAK 182
LDSATLNAAIGLLENTAPVGKTAQVCQ+ELVDISRELATSMKTFLAAPKQDPTNLGQSAK
Sbjct: 1608 LDSATLNAAIGLLENTAPVGKTAQVCQEELVDISRELATSMKTFLAAPKQDPTNLGQSAK 1667
Query: 183 DTANILPKIVNISKQLASLTTNPDIKQTQLLLSKKLADNMLELMISAKSGDVSDSKQAFN 362
DTANILPKIVNISKQLASLTTNPDIKQTQLLLSKKLADNMLELMISAKSGDVSDSKQAFN
Sbjct: 1668 DTANILPKIVNISKQLASLTTNPDIKQTQLLLSKKLADNMLELMISAKSGDVSDSKQAFN 1727
Query: 363 ASQSIADILTSVKGGVMQSRDCDESIQIIGKSKENLQKPANDTHGKTYQQYRDEMTEVAK 542
ASQSIADILTSVKGGVMQSRDCDESIQIIGKSKENLQKPANDTHGKTYQQYRDEMTE+AK
Sbjct: 1728 ASQSIADILTSVKGGVMQSRDCDESIQIIGKSKENLQKPANDTHGKTYQQYRDEMTEIAK 1787
Query: 543 QLALGVSQLANSAXXXXXXNS-----------QLAQAAKQVSNATAALVEAAKQVNEEPE 689
QLALGVSQLANSA +LA+ A+ + AT + K ++
Sbjct: 1788 QLALGVSQLANSAKSKPEEIGSSSLKIASIIPRLAETARSTAAATNDVAAKKKLIDSTTG 1847
Query: 690 VEFDTTN-LSNAQIISKE 740
+ T+N +S+A++ S +
Sbjct: 1848 IIDATSNIISDAKLASAD 1865
Score = 273 bits (697), Expect = 2e-71
Identities = 186/423 (43%), Positives = 225/423 (53%), Gaps = 25/423 (5%)
Frame = +3
Query: 81 QKELVDISRELATSMKTFLAAPKQDPTN--------LGQSAKDTANI-LPKIVNISKQLA 233
Q +L +IS E+ S+ T + A + P G+S ++TA L I ++
Sbjct: 2187 QNKLSEISSEVVESISTCVNAAEDLPEGKRAKLLFAAGESLEETAEKELKAAAAIIEEAT 2246
Query: 234 SLTTNPDIKQTQLLLSKKLADNML-ELMISAKSGDVSDSKQAFNASQSIADILTSV---- 398
+ N K+ Q ++ + + + E ++ A S + + ++ L
Sbjct: 2247 AALLNAKKKREQNRIASGIDEAGIDESILEAARAITSATGVLVQCATNVQHELVLAGKVG 2306
Query: 399 -KGGVMQ-----SRDCDESIQIIGKSKENLQKPANDT-HGKTYQQYRDEMTEVAKQLALG 557
KG + + +R + Q + S + L AN + GK ++ ++ AK +A
Sbjct: 2307 NKGNMYRRDPTWARGLISAAQAVAGSVQGLVHSANSSSQGKVDEE---QLVASAKGVAAA 2363
Query: 558 VSQLANS----AXXXXXXNSQLAQAAKQVSNATAALVEAAKQVNEEPEVEFDTTNLSNAQ 725
++L + A NSQLAQAAKQVSNATAALVEAAKQVNEEPEVEFDTTNLSNAQ
Sbjct: 2364 TARLVTASRAKADLNSASNSQLAQAAKQVSNATAALVEAAKQVNEEPEVEFDTTNLSNAQ 2423
Query: 726 IISKEMDXXXXXXXXXXXXXXXXXXXFSIRKKEYSDQTGNPSPAKDSDNKPTTSISVGIT 905
IISKEMD FSIRKKEYSDQTGNPSPAKDSDNKPTTSISVGIT
Sbjct: 2424 IISKEMDQQIQILKLKKELEQAEKKLFSIRKKEYSDQTGNPSPAKDSDNKPTTSISVGIT 2483
Query: 906 PTKRXXXXXXXXXXXXXXXXXXGTPTLPPRPLMXXXXXXXXXXXXXXXXXXXXXXXXXXX 1085
PTKR GTPTLPPRPLM
Sbjct: 2484 PTKRTTQASPPSPPLTPTQQAAGTPTLPPRPLMKKPAPSQAPSSPVAPVSAPVSKPSPKP 2543
Query: 1086 XXXXXXXXXXXXNKTYTLEELKKKPANIDHSNLEIYLSDEEFKAVFNCERSELAAMPTWK 1265
NKTYTLEELKKKPANIDHSNLEIYLSDEEFKAVFNCERSELAAMPTWK
Sbjct: 2544 APKPAAPTAAAPNKTYTLEELKKKPANIDHSNLEIYLSDEEFKAVFNCERSELAAMPTWK 2603
Query: 1266 RNN 1274
RNN
Sbjct: 2604 RNN 2606
Score = 63.9 bits (154), Expect = 1e-08
Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 10/238 (4%)
Frame = +3
Query: 60 GKTAQVCQKELVDISRELATSMKTFLAAPKQDPTNLGQSAKDTANILPKIVNISKQLASL 239
G+T + + L +R L +S K L K P LG+++KD A + ++ N +K +
Sbjct: 1021 GQTRENALELLNVAARALGSSAKQVLLQYKTSPEKLGETSKDLATSVSQVTNAAKSVCFT 1080
Query: 240 TTNPDIKQTQLLLSKKLADNMLELM-----ISAKSGDVSDSKQAFNAS-----QSIADIL 389
T N +++ L +K++ L+ +S+ GD S + A +S +++A++L
Sbjct: 1081 TQNRSVQKAVLGAAKQITTESTNLVSCARAVSSNPGDPS-LESALQSSVKAIAEALANLL 1139
Query: 390 TSVKGGVMQSRDCDESIQIIGKSKENLQKPANDTHGKTYQQYRDEMTEVAKQLALGVSQL 569
T+ KGG +D D++I+ I + + P + G+ ++ +K L VSQ+
Sbjct: 1140 TTSKGGDPGGKDLDDAIEAIKNDTKRINNPPVNLGGEGGVN-SEKAISSSKALVGAVSQV 1198
Query: 570 ANSAXXXXXXNSQLAQAAKQVSNATAALVEAAKQVNEEPEVEFDTTNLSNAQIISKEM 743
A +A S L +A+ S LV DT NL I++K++
Sbjct: 1199 AANARSNP---SALGASARTTSTTFTLLV--------------DTINLCTGTIVNKQL 1239
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,847,745,085
Number of extensions: 31952478
Number of successful extensions: 69025
Number of sequences better than 10.0: 179
Number of HSP's gapped: 68947
Number of HSP's successfully gapped: 190
Length of query: 489
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 356
Effective length of database: 620,718,517
Effective search space: 220975792052
Effective search space used: 220975792052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
7 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
1 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |