Contig-U12073-1 |
Contig ID |
Contig-U12073-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
912 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
2118980 |
End point |
2119867 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
4 |
Number of EST |
5 |
Link to clone list |
U12073 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.11.29 |
Homology vs DNA |
Query= Contig-U12073-1 (Contig-U12073-1Q) /CSM_Contig/Contig-U12073-1Q.Seq.d (922 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 1150 0.0 1 (BJ352901) Dictyostelium discoideum cDNA clone:dda48e10, 3' ... 1140 0.0 1 (BJ357921) Dictyostelium discoideum cDNA clone:dda65l04, 3' ... 944 0.0 1 (BJ405786) Dictyostelium discoideum cDNA clone:dds33b02, 3' ... 781 0.0 2 (BJ380207) Dictyostelium discoideum cDNA clone:ddc37k10, 3' ... 113 1e-20 1 (BJ393888) Dictyostelium discoideum cDNA clone:dds33b02, 5' ... 68 6e-07 1 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 40 6e-05 20 (EJ091955) 1095460200961 Global-Ocean-Sampling_GS-26-01-01-1... 48 0.59 1 (AC115740) Mus musculus chromosome 3, clone RP23-476G18, com... 34 1.0 7 (AC175833) Pan troglodytes BAC clone CH251-679G1 from chromo... 40 1.5 7 (BV615196) S217P62216FC10.T0 Noemie Pan troglodytes troglody... 42 1.7 2 (AL762209) Arabidopsis thaliana T-DNA flanking sequence GK-0... 36 1.7 2 (BX649289) Zebrafish DNA sequence from clone DKEY-231H5 in l... 46 2.3 1 (CT010456) Mouse DNA sequence from clone RP23-96D14 on chrom... 46 2.3 1 (AM433710) Vitis vinifera contig VV78X205934.12, whole genom... 46 2.3 1 (AC083856) Mus musculus strain C57BL6/J chromosome 12 clone ... 46 2.3 1 (ER530227) 1093015742857 Global-Ocean-Sampling_GS-35-01-01-1... 46 2.3 1 (EJ718179) 1092959435973 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.3 1 (EJ696462) 1092956019857 Global-Ocean-Sampling_GS-30-02-01-1... 46 2.3 1 (FE660311) UAHAUST_01A_R_G09 UaHaust_ARS Uromyces appendicul... 46 2.3 1 (FE660262) UAHAUST_01A_F_G09 UaHaust_ARS Uromyces appendicul... 46 2.3 1 (FC760809) CBBN12295.rev CBBN Lottia gigantea 3,4,5,6.5d Lar... 46 2.3 1 (CP000439) Francisella tularensis subsp. novicida U112, comp... 46 2.3 1 (Z33362) M.capricolum DNA for CONTIG MCAAZ. 40 2.8 2 (AC179010) Strongylocentrotus purpuratus clone R3-32H16, WOR... 38 2.8 5 (CU633954) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 3.7 4 (AL031629) Caenorhabditis elegans YAC Y106G6D. 34 4.0 3 (CU467507) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.4 2 (AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 36 5.0 8 (CU851793) A BAC library has been constructed from PN40024 g... 38 5.0 2 (AC025759) Homo sapiens chromosome 5 clone CTD-2367B21, comp... 36 5.4 4 (AC023460) Homo sapiens chromosome 7 clone RP11-799J23 map 7... 40 5.5 8 (EJ250827) 1095344031360 Global-Ocean-Sampling_GS-27-01-01-1... 34 5.9 2 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 34 6.0 8 (AX346432) Sequence 1503 from Patent WO0200928. 38 6.1 4 (CR793161) GR0AAA10AA02RM1 INRA BAC Bos taurus genomic clone... 34 6.3 2 (AC176297) Strongylocentrotus purpuratus clone R3-3005P21, W... 34 7.3 6 (EK354386) 1095468426869 Global-Ocean-Sampling_GS-31-01-01-1... 40 8.2 2 (AX345314) Sequence 385 from Patent WO0200928. 38 8.3 3 (BJ387872) Dictyostelium discoideum cDNA clone:dds5f18, 5' e... 36 8.6 2 (G05928) human STS WI-9345, sequence tagged site. 44 9.2 1 (BV606220) S215P60094FC4.T0 Clara Pan troglodytes troglodyte... 44 9.2 1 (AL683799) Mouse DNA sequence from clone RP23-167D4 on chrom... 44 9.2 1 (AC200594) Rhesus Macaque BAC CH250-15P19 () complete seque... 44 9.2 1 (CT485797) Medicago truncatula chromosome 5 clone mth4-11a3,... 44 9.2 1 (DJ056673) METHODS AND KITS FOR INVESTIGATING CANCER. 44 9.2 1 (DD095833) THERAPEUTIC POLYPEPTIDES, NUCLEIC ACIDS ENCODING ... 44 9.2 1 (CS119578) Sequence 1625 from Patent WO2005054508. 44 9.2 1 (CS118576) Sequence 623 from Patent WO2005054508. 44 9.2 1 (CS118575) Sequence 622 from Patent WO2005054508. 44 9.2 1 (CS080957) Sequence 160 from Patent WO2005040414. 44 9.2 1 (CS072022) Sequence 42 from Patent WO2001049309. 44 9.2 1 (CS063176) Sequence 160 from Patent EP1522594. 44 9.2 1 (CQ728501) Sequence 14435 from Patent WO02068579. 44 9.2 1 (BD344934) Composition. 44 9.2 1 (AX930362) Sequence 1 from Patent WO03087369. 44 9.2 1 (AX188190) Sequence 3885 from Patent WO0142467. 44 9.2 1 (X75308) H.sapiens mRNA for collagenase 3. 44 9.2 1 (AY741163) Homo sapiens matrix metalloproteinase 13 (collage... 44 9.2 1 (AP002751) Homo sapiens genomic DNA, chromosome 11q, clone:R... 44 9.2 1 (AP002370) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 44 9.2 1 (AP000789) Homo sapiens genomic DNA, chromosome 11 clone:RP1... 44 9.2 1 (AL357274) Human DNA sequence from clone RP11-685P13 on chro... 44 9.2 1 (AL078634) Human DNA sequence from clone RP5-1049G11 on chro... 44 9.2 1 (AF091886) Homo sapiens Usher syndrome type IIa protein gene... 44 9.2 1 (AC138024) Homo sapiens chromosome 1 clone RP5-1099E6, compl... 44 9.2 1 (AC119429) Homo sapiens chromosome 1 clone RP4-723P6, comple... 44 9.2 1 (AC104837) Homo sapiens chromosome 1 clone RP4-641G12, compl... 44 9.2 1 (AC099674) Homo sapiens chromosome 1 clone RP11-143H12, comp... 44 9.2 1 (AC130852) Rattus norvegicus clone CH230-109N20, WORKING DRA... 44 9.2 1 (AC109991) Rattus norvegicus clone CH230-19B16, *** SEQUENCI... 44 9.2 1 (AC095346) Rattus norvegicus clone CH230-69B5, WORKING DRAFT... 44 9.2 1 (CU856657) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.2 1 (CU469367) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.2 1 (CU467683) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 9.2 1 (AP001018) Homo sapiens genomic DNA, chromosome 11q22 clone:... 44 9.2 1 (AP000875) Homo sapiens genomic DNA, chromosome 11q22 clone:... 44 9.2 1 (AC021209) Homo sapiens chromosome 1 clone RP11-271N19, WORK... 44 9.2 1 (AC018708) Homo sapiens chromosome 11 clone RP11-118L16, WOR... 44 9.2 1 (EJ977188) 1093022127312 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1 (EJ966867) 1093022050128 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1 (EJ950938) 1093018944890 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1 (EJ950772) 1093018943738 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1 (EJ915920) 1093018560386 Global-Ocean-Sampling_GS-30-02-01-1... 44 9.2 1 (AQ177538) HS_2201_A2_H01_MF CIT Approved Human Genomic Sper... 44 9.2 1 (AQ078091) CIT-HSP-2366K20.TF CIT-HSP Homo sapiens genomic c... 44 9.2 1 (AQ031720) HS_2225_B2_C12_MF CIT Approved Human Genomic Sper... 44 9.2 1 (ED977021) OA_CBa0177K06.r OA_CBa Oryza australiensis genomi... 44 9.2 1 (DX504604) 527_13_14219269_5489_43926_007 Limanthese alba me... 44 9.2 1 (CW554706) OA_ABa0074J07.f OA_ABa Oryza australiensis genomi... 44 9.2 1 (CE651586) tigr-gss-dog-17000367906293 Dog Library Canis lup... 44 9.2 1 (CE377343) tigr-gss-dog-17000362242013 Dog Library Canis lup... 44 9.2 1 (BZ101475) CH230-147C1.TJB CHORI-230 Segment 1 Rattus norveg... 44 9.2 1 (AG353037) Mus musculus molossinus DNA, clone:MSMg01-150K14.... 44 9.2 1 (EB649729) GmUSCLM01pTriplEx204g19f1 Gillichthys liver & mus... 44 9.2 1 (EB647762) GmUSCLM01pTriplEx204h21f1 Gillichthys liver & mus... 44 9.2 1 (CJ461956) Macaca fascicularis mRNA, clone: QmoA-14976, 5' e... 44 9.2 1 (AI956832) ul79d04.x1 Sugano mouse kidney mkia Mus musculus ... 44 9.2 1 (CD000038) AGENCOURT_13631572 NIH_MGC_186 Homo sapiens cDNA ... 44 9.2 1 (CA448955) UI-H-EI1-azg-o-12-0-UI.s1 NCI_CGAP_EI1 Homo sapie... 44 9.2 1
>(AC117075) Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. Length = 254733
Score = 1150 bits (580), Expect = 0.0 Identities = 580/580 (100%) Strand = Plus / Plus
Query: 126 atagaaaagcagatggtcgtacacttcttcaagattttagatcaaaaacaatcatttatc 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56203 atagaaaagcagatggtcgtacacttcttcaagattttagatcaaaaacaatcatttatc 56262
Query: 186 tagataataactatgtaaaggatgaattgttatatccagcctctgagtatattagatcaa 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56263 tagataataactatgtaaaggatgaattgttatatccagcctctgagtatattagatcaa 56322
Query: 246 aagaatttttaaatgctgcctatcatcatggtattcatgttttaatggttggtaaaaatt 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56323 aagaatttttaaatgctgcctatcatcatggtattcatgttttaatggttggtaaaaatt 56382
Query: 306 tctcaatcgagaatgaaatcttcccaattaatacatttgaaagagcaactttggtttatt 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56383 tctcaatcgagaatgaaatcttcccaattaatacatttgaaagagcaactttggtttatt 56442
Query: 366 ataaacaacataaacaattattatacgctttaaaacatagaattccttctggcactggtt 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56443 ataaacaacataaacaattattatacgctttaaaacatagaattccttctggcactggtt 56502
Query: 426 gtggtcaaattataccaccacatatggctgttgatgataatggtgatctatcattaaatc 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56503 gtggtcaaattataccaccacatatggctgttgatgataatggtgatctatcattaaatc 56562
Query: 486 tattagttgataaaaagaatgaatatttcattgtaatctttagacaattaaccctacttt 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56563 tattagttgataaaaagaatgaatatttcattgtaatctttagacaattaaccctacttt 56622
Query: 546 caatctttaaaaaatcaaattcactctacccaattaaaacaattcatttagatagtttta 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56623 caatctttaaaaaatcaaattcactctacccaattaaaacaattcatttagatagtttta 56682
Query: 606 atttaacttgtttaactcaaccacattctgaaactaatgaaatcattacaattaatttag 665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56683 atttaacttgtttaactcaaccacattctgaaactaatgaaatcattacaattaatttag 56742
Query: 666 aatttcaacatttaggttttaaaattaatttttcaccatc 705 |||||||||||||||||||||||||||||||||||||||| Sbjct: 56743 aatttcaacatttaggttttaaaattaatttttcaccatc 56782
Score = 56.0 bits (28), Expect = 0.002 Identities = 44/51 (86%) Strand = Plus / Plus
Query: 857 ggtntanatgtttcaggtggtggtgaaaganncagtgtcggtccantttca 907 ||| || ||||||||||||||||||||||| ||||| |||||| ||||| Sbjct: 56934 ggtttaaatgtttcaggtggtggtgaaagaaaaagtgttggtccaatttca 56984
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 894,617,052 Number of extensions: 56635059 Number of successful extensions: 5060954 Number of sequences better than 10.0: 148 Length of query: 922 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 898 Effective length of database: 97,308,875,965 Effective search space: 87383370616570 Effective search space used: 87383370616570 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 2 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
2 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
1 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |