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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12374-1
Contig ID Contig-U12374-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12374-1 (Contig-U12374-1Q) /CSM_Contig/Contig-U12374-1Q.Seq.d
TTTAAAATTTTAATAATNCTATAATTATTATAGTTATTATTATAATTNAT
TTTATTTTTATTTTTAATTNAATTNAATTTATTTTATTTTATNTAAAAAA
AAAANNNNNNNNN----------TCTAAAAATATATTTAAAGATAAATCA
ATCATGAAAACTGTATTAATTTATGCGACAGTTGGATTTATTTACACAAT
GCTTGATGAAGTATTTCCATTATGGGCATTCGCACAAGTTTCAAGTGGTG
GTTTATCAATGACAAGTGGTACAGTTGGTGTTTGTGGTATTATTGGTGGT
GCAAGTATAATTTTTATTCAATTATTTCTTATAAAACCAGTAACAAGAAA
ACTTGGTTTAATTCAAACTTTTATTTATGGTTGTTCAATTGCTTTTTGCT
CTTTTCTATCTTATCCACTTTTAAATTTCATACGAGCGCCTCATGAATCA
ATTTCAAGTGTAACACAAGATATAATATTTTGGGTTTCAGTTACAATTGT
AATTTCAATTAGAAATATTGGTGCTCAATTAATTTTTACACCAATTATGG
CTTTAATTAATAATAGTGCTAAAATTGCTGTTAGAGGTAGTGCAAATGGT
TTGGGTCAATCATTGGTTGCAGCCACTAGAACA
Gap gap included
Contig length 623
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 3934732
End point 3935345
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U12374
List of clone(s) 

est1=VHA259F,1,104
est2=VHA259Z,105,616
est3=VHB609Z,116,592
Translated Amino Acid sequence 
*NFNNXIIIIVIIIIXFIFIFNXIXFILFYXKKKXXX---

---SKNIFKDKSIMKTVLIYATVGFIYTMLDEVFPLWAFAQVSSGGLSMTSGTVGVCGII
GGASIIFIQLFLIKPVTRKLGLIQTFIYGCSIAFCSFLSYPLLNFIRAPHESISSVTQDI
IFWVSVTIVISIRNIGAQLIFTPIMALINNSAKIAVRGSANGLGQSLVAATRT
Translated Amino Acid sequence (All Frames) 
Frame A:
fkilixl*ll*lll*xilflflixxnlfyfx*kkxxx---

---SKNIFKDKSIMKTVLIYATVGFIYTMLDEVFPLWAFAQVSSGGLSMTSGTVGVCGII
GGASIIFIQLFLIKPVTRKLGLIQTFIYGCSIAFCSFLSYPLLNFIRAPHESISSVTQDI
IFWVSVTIVISIRNIGAQLIFTPIMALINNSAKIAVRGSANGLGQSLVAATRT

Frame B:
lkf**xynyysyyynxfyfyf*xnxiyfilxkkkxxx---

---lkiylkinqs*kly*fmrqldlftqclmkyfhyghshkfqvvvyq*qvvqlvfvvll
vvqv*flfnyfl*nq*qenlv*fkllfmvvqllfalfylihf*isyerlmnqfqv*hki*
yfgfqlql*fqleilvln*flhqlwl*liivlklllevvqmvwvnhwlqple

Frame C:
*NFNNXIIIIVIIIIXFIFIFNXIXFILFYXKKKXXX---

---*kyi*r*inhencinlcdswiylhna**sisimgirtsfkwwfindkwyswclwyyw
wckynfysiisyktsnkktwfnsnfylwlfncfllfsilstfkfhtsas*infkcntryn
ilgfsyncnfn*kywcsinfytnygfn***c*ncc*r*ckwfgsiigcsh*n
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12374-1 (Contig-U12374-1Q)
/CSM_Contig/Contig-U12374-1Q.Seq.d
         (633 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12374-1 (Contig-U12374-1Q) /CSM_Contig/Conti...  1011  0.0
Contig-U13855-1 (Contig-U13855-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U05861-1 (Contig-U05861-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U14807-1 (Contig-U14807-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U13099-1 (Contig-U13099-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U12887-1 (Contig-U12887-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U11113-1 (Contig-U11113-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U09444-1 (Contig-U09444-1Q) /CSM_Contig/Conti...    34  0.17
Contig-U06537-1 (Contig-U06537-1Q) /CSM_Contig/Conti...    34  0.17

>Contig-U12374-1 (Contig-U12374-1Q) /CSM_Contig/Contig-U12374-1Q.Seq.d
          Length = 633

 Score = 1011 bits (510), Expect = 0.0
 Identities = 510/510 (100%)
 Strand = Plus / Plus

                                                                       
Query: 124 tctaaaaatatatttaaagataaatcaatcatgaaaactgtattaatttatgcgacagtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tctaaaaatatatttaaagataaatcaatcatgaaaactgtattaatttatgcgacagtt 183

                                                                       
Query: 184 ggatttatttacacaatgcttgatgaagtatttccattatgggcattcgcacaagtttca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ggatttatttacacaatgcttgatgaagtatttccattatgggcattcgcacaagtttca 243

                                                                       
Query: 244 agtggtggtttatcaatgacaagtggtacagttggtgtttgtggtattattggtggtgca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 agtggtggtttatcaatgacaagtggtacagttggtgtttgtggtattattggtggtgca 303

                                                                       
Query: 304 agtataatttttattcaattatttcttataaaaccagtaacaagaaaacttggtttaatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agtataatttttattcaattatttcttataaaaccagtaacaagaaaacttggtttaatt 363

                                                                       
Query: 364 caaacttttatttatggttgttcaattgctttttgctcttttctatcttatccactttta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 caaacttttatttatggttgttcaattgctttttgctcttttctatcttatccactttta 423

                                                                       
Query: 424 aatttcatacgagcgcctcatgaatcaatttcaagtgtaacacaagatataatattttgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aatttcatacgagcgcctcatgaatcaatttcaagtgtaacacaagatataatattttgg 483

                                                                       
Query: 484 gtttcagttacaattgtaatttcaattagaaatattggtgctcaattaatttttacacca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gtttcagttacaattgtaatttcaattagaaatattggtgctcaattaatttttacacca 543

                                                                       
Query: 544 attatggctttaattaataatagtgctaaaattgctgttagaggtagtgcaaatggtttg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 attatggctttaattaataatagtgctaaaattgctgttagaggtagtgcaaatggtttg 603

                                         
Query: 604 ggtcaatcattggttgcagccactagaaca 633
           ||||||||||||||||||||||||||||||
Sbjct: 604 ggtcaatcattggttgcagccactagaaca 633


>Contig-U13855-1 (Contig-U13855-1Q) /CSM_Contig/Contig-U13855-1Q.Seq.d
          Length = 1550

 Score = 36.2 bits (18), Expect = 0.044
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 448 tcaatttcaagtgtaaca 465
           ||||||||||||||||||
Sbjct: 490 tcaatttcaagtgtaaca 507


>Contig-U05861-1 (Contig-U05861-1Q) /CSM_Contig/Contig-U05861-1Q.Seq.d
          Length = 353

 Score = 36.2 bits (18), Expect = 0.044
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 157 aaaactgtattaatttat 174
           ||||||||||||||||||
Sbjct: 314 aaaactgtattaatttat 297


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9868
Number of Sequences: 6905
Number of extensions: 9868
Number of successful extensions: 1091
Number of sequences better than 10.0: 108
length of query: 633
length of database: 5,674,871
effective HSP length: 16
effective length of query: 617
effective length of database: 5,564,391
effective search space: 3433229247
effective search space used: 3433229247
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA 
Query= Contig-U12374-1 (Contig-U12374-1Q) /CSM_Contig/Contig-U12374-1Q.Seq.d
         (633 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ436564) Dictyostelium discoideum cDNA clone:ddv31e16, 3' ...  1011   0.0    1
(BJ437350) Dictyostelium discoideum cDNA clone:ddv34a04, 3' ...   924   0.0    1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   0.090  13
(AP009696) Lotus japonicus genomic DNA, chromosome 1, clone:...    48   0.38   1
(AC135936) Rattus norvegicus clone CH230-225H8, *** SEQUENCI...    48   0.38   1
(AC095725) Rattus norvegicus clone CH230-9A4, *** SEQUENCING...    48   0.38   1
(DH783258) Rattus norvegicus DNA, BAC clone: RNB1-372F20, 5'...    48   0.38   1
(EW983915) EST_sras_evg_776173 srasevg mixed_tissue Sebastes...    48   0.38   1
(EW983914) EST_sras_evg_775789 srasevg mixed_tissue Sebastes...    48   0.38   1
(CP000382) Clostridium novyi NT, complete genome.                  48   0.38   1
(EK166635) 1095458053972 Global-Ocean-Sampling_GS-31-01-01-1...    40   0.59   2
(CT120776) Sus scrofa genomic clone PigE-230A17, genomic sur...    38   0.75   2
(BX649616) Zebrafish DNA sequence from clone CH211-165K17 in...    42   0.80   6
(EJ638014) 1093006414544 Global-Ocean-Sampling_GS-29-01-01-1...    36   0.84   2
(EJ632395) 1092964806068 Global-Ocean-Sampling_GS-29-01-01-1...    36   1.0    2
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   1.1    8
(DY370424) ZO__Ef0002P22.r ZO__Ef Zingiber officinale cDNA c...    32   1.3    3
(DY370426) ZO__Ef0002P24.f ZO__Ef Zingiber officinale cDNA c...    32   1.3    3
(AC213336) Pan troglodytes BAC clone CH251-291L13 from chrom...    46   1.5    1
(AC199746) Pan troglodytes BAC clone CH251-336G4 from chromo...    46   1.5    1
(AC199646) Pan troglodytes BAC clone CH251-150L14 from chrom...    46   1.5    1
(AC194568) Pan troglodytes BAC clone CH251-57L13 from chromo...    46   1.5    1
(AC213073) Pan troglodytes chromosome 7 clone CH251-666I19, ...    46   1.5    1
(DB851758) Nilaparvata lugens mRNA, EST clone:NLMB2981, 5' e...    46   1.5    1
(BX000446) Zebrafish DNA sequence from clone CH211-284N24.         44   1.7    4
(CR293500) Zebrafish DNA sequence from clone DKEY-211I20 in ...    42   1.9    6
(EF530540) Uncultured Trebouxia photobiont ATP synthase beta...    38   1.9    2
(AM488627) Vitis vinifera contig VV78X163327.10, whole genom...    44   2.6    3
(AC189858) Mus musculus chromosome 16 clone RP23-212A19, WOR...    38   2.6    4
(CU459031) Medicago truncatula chromosome 5 clone mth4-9h19,...    38   2.9    4
(AM482395) Vitis vinifera contig VV78X163414.4, whole genome...    32   3.2    4
(ED235579) AUAC-aah25f12.b1 Ascaris suum whole genome shotgu...    34   3.3    2
(ED281155) AUAC-aah25e10.b1 Ascaris suum whole genome shotgu...    34   3.3    2
(AZ530055) ENTCZ67TF Entamoeba histolytica Sheared DNA Entam...    32   3.5    3
(AV335789) Mus musculus adult male medulla oblongata cDNA, R...    38   3.5    2
(AP006380) Lotus japonicus genomic DNA, chromosome 4, clone:...    36   3.7    4
(FG733106) G1145P336FC21.T0 Anolis carolinensis pooled norma...    34   3.9    2
(EK385278) 1095469480285 Global-Ocean-Sampling_GS-31-01-01-1...    34   3.9    2
(BM973355) UI-CF-EC1-abx-k-19-0-UI.s1 UI-CF-EC1 Homo sapiens...    32   4.0    2
(AZ533019) ENTBW83TR Entamoeba histolytica Sheared DNA Entam...    32   4.0    3
(EF113537) Sphaeroplea soleirolii var. crassisepta strain Ho...    38   4.4    2
(EF113484) Ankyra judayi strain SAG 17.84 AtpB (atpB) gene, ...    38   4.4    2
(DQ307681) Fucus vesiculosus ATP synthase CF1 beta subunit (...    38   5.3    2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    34   5.6    5
(AP009247) Candidatus Vesicomyosocius okutanii HA DNA, compl...    36   5.8    11
(BX927347) Zebrafish DNA sequence from clone CH211-110D14 in...    44   6.0    1
(BX296567) Zebrafish DNA sequence from clone DKEY-261P22 in ...    44   6.0    1
(BC134908) Danio rerio cDNA clone IMAGE:7266568.                   44   6.0    1
(BC124510) Danio rerio cDNA clone IMAGE:7998528.                   44   6.0    1
(CT025597) Mouse DNA sequence from clone RP23-265N2 on chrom...    44   6.0    1
(EU916946) Corylus avellana clone K79-2-1 microsatellite seq...    44   6.0    1
(AP008209) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.0    1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    44   6.0    1
(AP004331) Oryza sativa Japonica Group genomic DNA, chromoso...    44   6.0    1
(AP003570) Oryza sativa Japonica Group genomic DNA, chromoso...    44   6.0    1
(AP003247) Oryza sativa Japonica Group genomic DNA, chromoso...    44   6.0    1
(AM435843) Vitis vinifera, whole genome shotgun sequence, co...    44   6.0    1
(AC172299) Glycine max clone gmw2-12n11, complete sequence.        44   6.0    1
(AC097279) Oryza sativa chromosome 3 BAC OSJNBa0093I13 genom...    44   6.0    1
(EA688820) Sequence 67699 from patent US 7365185.                  44   6.0    1
(EA654326) Sequence 33205 from patent US 7365185.                  44   6.0    1
(A78674) Sequence 5 from Patent EP0571880.                         44   6.0    1
(AC132834) Homo sapiens chromosome 8, clone CTD-2344M9, comp...    44   6.0    1
(AC021393) Homo sapiens chromosome 8, clone RP11-27P7, compl...    44   6.0    1
(AC141417) Papio anubis clone rp41-443b7, WORKING DRAFT SEQU...    44   6.0    1
(AC133306) Rattus norvegicus clone CH230-268P8, *** SEQUENCI...    44   6.0    1
(AC129615) Rattus norvegicus clone CH230-430L22, WORKING DRA...    44   6.0    1
(AC127985) Rattus norvegicus clone CH230-411H8, *** SEQUENCI...    44   6.0    1
(AC118447) Rattus norvegicus clone CH230-415L8, WORKING DRAF...    44   6.0    1
(AC111649) Rattus norvegicus clone CH230-102O5, *** SEQUENCI...    44   6.0    1
(AC109684) Rattus norvegicus clone CH230-74G13, WORKING DRAF...    44   6.0    1
(CU928250) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(CU915589) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(CT954242) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(CR387928) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   6.0    1
(AY178788) Canis familiaris chromosome CFA9, *** SEQUENCING ...    44   6.0    1
(AC213350) Zea mays chromosome 7 clone CH201-144L24; ZMMBBc0...    44   6.0    1
(AC206969) Zea mays chromosome 4 clone CH201-356O6; ZMMBBc03...    44   6.0    1
(AC202828) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    44   6.0    1
(AC201184) Strongylocentrotus purpuratus clone R3-14O23, WOR...    44   6.0    1
(AC186738) Glycine max clone gmp1-103h8, WORKING DRAFT SEQUE...    44   6.0    1
(AC181464) Strongylocentrotus purpuratus clone R3-51D5, WORK...    44   6.0    1
(AC180045) Strongylocentrotus purpuratus clone R3-25D13, WOR...    44   6.0    1
(AC180025) Strongylocentrotus purpuratus clone R3-3030P3, WO...    44   6.0    1
(AC178677) Strongylocentrotus purpuratus clone R3-3007E13, W...    44   6.0    1
(AC177296) Strongylocentrotus purpuratus clone R3-44O22, WOR...    44   6.0    1
(AC173521) Bos taurus clone CH240-119I7, WORKING DRAFT SEQUE...    44   6.0    1
(ER698246) SB_BBc62-N02.R SB_BBc Sorghum bicolor genomic 3',...    44   6.0    1
(ER302893) 1092343720316 Global-Ocean-Sampling_GS-34-01-01-1...    44   6.0    1
(EJ432249) 1093015262770 Global-Ocean-Sampling_GS-28-01-01-1...    44   6.0    1
(ED764269) GM_WBb0136G15.f GM_WBb Glycine max genomic clone ...    44   6.0    1
(ED706533) GM_WBb0051K20.f GM_WBb Glycine max genomic clone ...    44   6.0    1
(ED682615) GM_WBb0016E17.r GM_WBb Glycine max genomic clone ...    44   6.0    1
(ED375125) AUAC-aaw13a11.b1 Ascaris suum whole genome shotgu...    44   6.0    1
(ED307543) AUAC-aac20a03.b1 Ascaris suum whole genome shotgu...    44   6.0    1
(ED199342) AUAC-aaf92f07.b1 Ascaris suum whole genome shotgu...    44   6.0    1
(DU645588) gmw2-51k20-f.1 gmw2 Glycine max genomic clone gmw...    44   6.0    1
(DE637876) Bombyx mori genomic DNA, Fosmid clone:GBMFno384_i...    44   6.0    1
(DE510199) Bombyx mori genomic DNA, Fosmid clone:GBMFno125_i...    44   6.0    1
(CZ506929) GMW2-16E17a.g1 GMW2 Glycine max genomic, genomic ...    44   6.0    1

>(BJ436564) Dictyostelium discoideum cDNA clone:ddv31e16, 3' end,
           single read.
          Length = 512

 Score = 1011 bits (510), Expect = 0.0
 Identities = 510/510 (100%)
 Strand = Plus / Minus


Query: 124 tctaaaaatatatttaaagataaatcaatcatgaaaactgtattaatttatgcgacagtt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tctaaaaatatatttaaagataaatcaatcatgaaaactgtattaatttatgcgacagtt 453


Query: 184 ggatttatttacacaatgcttgatgaagtatttccattatgggcattcgcacaagtttca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ggatttatttacacaatgcttgatgaagtatttccattatgggcattcgcacaagtttca 393


Query: 244 agtggtggtttatcaatgacaagtggtacagttggtgtttgtggtattattggtggtgca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 agtggtggtttatcaatgacaagtggtacagttggtgtttgtggtattattggtggtgca 333


Query: 304 agtataatttttattcaattatttcttataaaaccagtaacaagaaaacttggtttaatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agtataatttttattcaattatttcttataaaaccagtaacaagaaaacttggtttaatt 273


Query: 364 caaacttttatttatggttgttcaattgctttttgctcttttctatcttatccactttta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 caaacttttatttatggttgttcaattgctttttgctcttttctatcttatccactttta 213


Query: 424 aatttcatacgagcgcctcatgaatcaatttcaagtgtaacacaagatataatattttgg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aatttcatacgagcgcctcatgaatcaatttcaagtgtaacacaagatataatattttgg 153


Query: 484 gtttcagttacaattgtaatttcaattagaaatattggtgctcaattaatttttacacca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gtttcagttacaattgtaatttcaattagaaatattggtgctcaattaatttttacacca 93


Query: 544 attatggctttaattaataatagtgctaaaattgctgttagaggtagtgcaaatggtttg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  attatggctttaattaataatagtgctaaaattgctgttagaggtagtgcaaatggtttg 33


Query: 604 ggtcaatcattggttgcagccactagaaca 633
           ||||||||||||||||||||||||||||||
Sbjct: 32  ggtcaatcattggttgcagccactagaaca 3

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 919,208,108
Number of extensions: 59346325
Number of successful extensions: 3686430
Number of sequences better than 10.0: 122
Length of query: 633
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 610
Effective length of database: 93,106,754,628
Effective search space: 56795120323080
Effective search space used: 56795120323080
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 2
Homology vs Protein 
Query= Contig-U12374-1 (Contig-U12374-1Q) /CSM_Contig/Contig-U12374-1Q.Seq.d
         (633 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT034280_1(BT034280|pid:none) Zea mays full-length cDNA clone ZM...    74   3e-12
EU953209_1(EU953209|pid:none) Zea mays clone 1390609 carbohydrat...    74   4e-12
AP008217_180(AP008217|pid:none) Oryza sativa (japonica cultivar-...    72   1e-11
AP008218_177(AP008218|pid:none) Oryza sativa (japonica cultivar-...    65   2e-09
AK065334_1(AK065334|pid:none) Oryza sativa Japonica Group cDNA c...    62   1e-08
AF543419_1(AF543419|pid:none) Oryza sativa (japonica cultivar-gr...    60   4e-08
AP008218_175(AP008218|pid:none) Oryza sativa (japonica cultivar-...    60   4e-08
CR954207_246(CR954207|pid:none) Ostreococcus tauri strain OTTH05...    60   4e-08
AP008218_176(AP008218|pid:none) Oryza sativa (japonica cultivar-...    59   9e-08
AL162691_8(AL162691|pid:none) Arabidopsis thaliana DNA chromosom...    59   1e-07
EU957871_1(EU957871|pid:none) Zea mays clone 1628246 carbohydrat...    59   2e-07
BT062710_1(BT062710|pid:none) Zea mays full-length cDNA clone ZM...    59   2e-07
AY092979_1(AY092979|pid:none) Arabidopsis thaliana transporter-l...    59   2e-07
AB011484_1(AB011484|pid:none) Arabidopsis thaliana genomic DNA, ...    59   2e-07
CR954210_325(CR954210|pid:none) Ostreococcus tauri strain OTTH05...    56   8e-07
BT042111_1(BT042111|pid:none) Zea mays full-length cDNA clone ZM...    56   1e-06
CP001326_721(CP001326|pid:none) Micromonas sp. RCC299 chromosome...    55   2e-06
BT064190_1(BT064190|pid:none) Zea mays full-length cDNA clone ZM...    55   2e-06
EU970439_1(EU970439|pid:none) Zea mays clone 345560 major facili...    55   2e-06
BT043445_1(BT043445|pid:none) Zea mays full-length cDNA clone ZM...    55   2e-06
BT055546_1(BT055546|pid:none) Zea mays full-length cDNA clone ZM...    55   2e-06
BT070123_1(BT070123|pid:none) Zea mays full-length cDNA clone ZM...    55   2e-06
CP000587_263(CP000587|pid:none) Ostreococcus lucimarinus CCE9901...    52   2e-05
CP001328_35(CP001328|pid:none) Micromonas sp. RCC299 chromosome ...    51   3e-05
AM920435_1315(AM920435|pid:none) Penicillium chrysogenum Wiscons...    50   5e-05
AE017349_386(AE017349|pid:none) Cryptococcus neoformans var. neo...    50   7e-05
AP008218_178(AP008218|pid:none) Oryza sativa (japonica cultivar-...    50   7e-05
AP000969_13(AP000969|pid:none) Oryza sativa Japonica Group genom...    49   1e-04
AC171499_1(AC171499|pid:none) Medicago truncatula clone mth2-157...    48   2e-04
AM494971_271(AM494971|pid:none) Leishmania braziliensis chromoso...    48   2e-04
AM920433_296(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    47   4e-04
AM502253_289(AM502253|pid:none) Leishmania infantum chromosome 35.     46   8e-04
CP000081_278(CP000081|pid:none) Leishmania major chromosome 35, ...    45   0.002
AM502253_288(AM502253|pid:none) Leishmania infantum chromosome 35.     44   0.004
AP007157_605(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    43   0.007
AM270336_46(AM270336|pid:none) Aspergillus niger contig An15c009...    43   0.009
AM920431_1254(AM920431|pid:none) Penicillium chrysogenum Wiscons...    43   0.009
AP007157_495(AP007157|pid:none) Aspergillus oryzae RIB40 genomic...    42   0.015
AM270171_11(AM270171|pid:none) Aspergillus niger contig An08c016...    42   0.019
CP000081_277(CP000081|pid:none) Leishmania major chromosome 35, ...    42   0.019
BX649607_29(BX649607|pid:none) Aspergillus fumigatus BAC pilot p...    41   0.025
EU968485_1(EU968485|pid:none) Zea mays clone 321339 carbohydrate...    41   0.033
AC141435_10(AC141435|pid:none) Medicago truncatula clone mth2-21...    40   0.043
CU633455_110(CU633455|pid:none) Podospora anserina genomic DNA c...    40   0.056
AP007161_395(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...    40   0.056
AM270382_12(AM270382|pid:none) Aspergillus niger contig An16c030...    40   0.073
AK318697_1(AK318697|pid:none) Arabidopsis thaliana AT5G13750 mRN...    40   0.073
CU633872_320(CU633872|pid:none) Podospora anserina genomic DNA c...    40   0.073
AP007174_27(AP007174|pid:none) Aspergillus oryzae RIB40 genomic ...    39   0.096
AE017226_1434(AE017226|pid:none) Treponema denticola ATCC 35405,...    39   0.16
CP000576_1887(CP000576|pid:none) Prochlorococcus marinus str. MI...    38   0.28
AE001437_143(AE001437|pid:none) Clostridium acetobutylicum ATCC ...    37   0.48
AM920421_173(AM920421|pid:none) Penicillium chrysogenum Wisconsi...    37   0.62
CP000111_1941(CP000111|pid:none) Prochlorococcus marinus str. MI...    37   0.62
CP000825_1963(CP000825|pid:none) Prochlorococcus marinus str. MI...    37   0.62
DQ366743_20(DQ366743|pid:none) Uncultured Prochlorococcus marinu...    37   0.62
DQ366736_8(DQ366736|pid:none) Uncultured Prochlorococcus marinus...    37   0.62
AM260525_1000(AM260525|pid:none) Bartonella tribocorum CIP 10547...    36   0.81
CP000830_999(CP000830|pid:none) Dinoroseobacter shibae DFL 12, c...    36   0.81
CP000081_274(CP000081|pid:none) Leishmania major chromosome 35, ...    36   1.1
EU017250_1(EU017250|pid:none) Trachelium caeruleum NADH-plastoqu...    35   1.4
CP000724_675(CP000724|pid:none) Alkaliphilus metalliredigens QYM...    35   1.4
AE017262_2588(AE017262|pid:none) Listeria monocytogenes str. 4b ...    35   1.8
AM286415_667(AM286415|pid:none) Yersinia enterocolitica subsp. e...    35   1.8
AJ009555_1(AJ009555|pid:none) Arabidopsis thaliana mRNA for hypo...    35   2.4
CP000425_1489(CP000425|pid:none) Lactococcus lactis subsp. cremo...    34   3.1
AE004439_1276(AE004439|pid:none) Pasteurella multocida subsp. mu...    34   3.1
CP000970_3091(CP000970|pid:none) Escherichia coli SMS-3-5, compl...    34   4.0
AM494971_268(AM494971|pid:none) Leishmania braziliensis chromoso...    34   4.0
(O06754) RecName: Full=Branched-chain amino acid transport syste...    34   4.0
AM502253_262(AM502253|pid:none) Leishmania infantum chromosome 35.     34   4.0
M88479_1(M88479|pid:none) E.coli glycosyl transferase (neuS) gen...    33   5.2
CP000725_1540(CP000725|pid:none) Streptococcus gordonii str. Cha...    33   5.3
AE005176_1539(AE005176|pid:none) Lactococcus lactis subsp. lacti...    33   5.3
CP000282_11(CP000282|pid:none) Saccharophagus degradans 2-40, co...    33   5.3
AP007151_990(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...    33   6.9
CP000767_1751(CP000767|pid:none) Campylobacter curvus 525.92, co...    33   6.9
BX571856_1819(BX571856|pid:none) Staphylococcus aureus subsp. au...    33   6.9
AP009044_2223(AP009044|pid:none) Corynebacterium glutamicum R DN...    33   6.9
(Q6GFT0) RecName: Full=Arsenical pump membrane protein; AltName:...    33   6.9
AP007174_215(AP007174|pid:none) Aspergillus oryzae RIB40 genomic...    33   9.0
CR543861_314(CR543861|pid:none) Acinetobacter sp. ADP1 complete ...    33   9.0
AM420293_4368(AM420293|pid:none) Saccharopolyspora erythraea NRR...    33   9.0
AY194060_2(AY194060|pid:none) Staphylococcus aureus strain SW27 ...    33   9.0

>BT034280_1(BT034280|pid:none) Zea mays full-length cDNA clone
           ZM_BFc0028A14 mRNA, complete cds.
          Length = 502

 Score = 74.3 bits (181), Expect = 3e-12
 Identities = 49/162 (30%), Positives = 78/162 (48%)
 Frame = +1

Query: 127 KNIFKDKSIMKTVLIYATVGFIYTMLDEVFPLWAFAQVSSGGLSMTSGTVGVCGIIGGAS 306
           K++F++  +M ++++Y    F      EVF LWA +    GGLS++S  VG    + GAS
Sbjct: 288 KSLFRNWPLMSSIIVYCIFSFHDMAYTEVFSLWAESDKKYGGLSLSSEDVGQVLAVTGAS 347

Query: 307 IIFIQLFLIKPVTRKLGLIQTFIYGCSIAFCSFLSYPLLNFIRAPHESISSVTQDIIFWV 486
           ++  QLFL   + + LG I++      +      +YP + +I  P  SI
Sbjct: 348 LLVYQLFLYPRINKVLGPIKSSRIAAILCIPILFAYPYMTYISEPGLSI----------- 396

Query: 487 SVTIVISIRNIGAQLIFTPIMALINNSAKIAVRGSANGLGQS 612
            + I  +I+N  A  I T    L NN+     RG+ANGL  +
Sbjct: 397 ILNIASAIKNNLAVTIITGTFILQNNAVPQDQRGAANGLSMT 438

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 748,468,487
Number of extensions: 13844429
Number of successful extensions: 37409
Number of sequences better than 10.0: 84
Number of HSP's gapped: 37361
Number of HSP's successfully gapped: 84
Length of query: 211
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 88
Effective length of database: 653,084,107
Effective search space: 57471401416
Effective search space used: 57471401416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 1.01  gvh: 0.48  alm: 0.11  top: 0.80  tms: 0.27  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 36.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 12.0 %: vacuolar
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for Contig-U12374-1 is pla
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0