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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U12435-1
Contig ID Contig-U12435-1
Contig update 2002.12.18
Contig sequence 
>Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Contig-U12435-1Q.Seq.d
TATAATAATAAATTTATTAAATTTTATTAGTTGTGATATTAAACTTTTTT
TTTTCTGTAAATGTTGGANATTGGAGTGATAATAATAATTGGTATGATTA
TATTAGTAGTAGCCAAACAACACTTCCAACATTAAATGATGAAACATACT
TAACATTAGTTTCCAATCAAATAGTAACCAACCACTATCAAAAAGCTATT
GCATCTAAAATTTATGTTGGTGGTTTTAATTATTCAACAAACTTTAATTC
CAAATATGGTATTCAAACTGCACTATTCCAAGTCAAAGACCAATTTGCCC
CTCAAGAAGTAATATTTAATATTAGTGGCGATCCATTAGAAAATCCAGAT
TTCAGAATCGATGCTGAAACTTTAATTTGTGCCGCAGGTTGTACTTTAAG
AACATTGGGTAAACATTTCTATGCTCCAAATGCAAGTGTTAGTATTTATG
GTGGAGTAGGTTGGGTTATTCAAGATACCTTGGTTTCCGGATTTTATTTA
GACTATACACTCTCCCTACTTCTCATGTCAAATGCTACAATGTTGGTTGA
AAATGCATTTATTGATCTCTATTCTCAATGGGATGTCATTTCTCAAAGTA
CTATTGTTATCAATAACACTCTTAATAAATTTGTAGTAAAAGATGGATCA
CTTTTAAATATTAAAGATTCAAAAATATCAATTTACAATAGTATGCTCTT
GACTGGAAATAAAACCAAATTAACTTTTGAAAATAGTATTGTTGATTTTG
GATTGGTTAAATTAGTTCCAATTAGTAGATGGGTTGATAGTCAATTGGTC
TTTTTAAATAGTGTATTTGATTGTAAACATCAAATTATTGTTAGTGGAAG
TTCATTAACAAGTTTGATACTTATCAAAGAAAATTCAAATGTAACTTTTA
ATGATGAGGTTGAATTTGATGGTGATTCTTTATTGGGTCTTTATAATTCC
AAATTGACAACAGGTAAATCATTGTTATTTGATGGTGCAAG---------
-TCCAAAGAAACTTCCATCAAGACCTATAATCAAGATGGTGGATTATTAG
TTTTAGATGATGCTTTGGTTCACTCAGATGAAACTATTAATTTATCAAAT
GGTTCTTTATATGGCATTGGTACCATTAATTCCTCATTATCAGTATCCGA
TGGTATTGTTGGTGATAAAGCTATCATTGGTACATTAAATGTCAGTGGTG
AATTAAATTCTGAAAATGGTCAATTCATTTTCACTTTAGATAGTTTAACC
AATTCAACATTTATTAATATTGGTAAAAATGCAACAATTAATAATTCAAC
ATTAATAATTAGAATTAATCAATATTTCATTGATAGTTTATTAAATCCAA
CACCAACACCAACAACTACAAATTCAACAAATTCAACTCAAGTATTTAAT
CAAACTTTAATAAATTATGAAAATTTATCTGGTACTGGATTTGGTGAAAT
TAAATTTGGTACCTATGACCCAACAAGTGGAGAAGAGAAATCATTACCAT
CATGTTATTCCGCAAGTAGTAGTAATTCTGGTAAAAACTTTGGTTTATTA
ATTAGAAGTGATGGTTGTGGAAATGTTGGTGATGGTAATAATGGTAATGG
TAATGGTGGTAATGGTGGTAATGGTGGTAAATCAAGTTTGTCAACTGGTG
CAATCGTTGGTATTGTAGTTGGTATTGCTGGTGGTGCTGCTATTATTGGT
ACTGTTATTTACTTTAGAAATCGTTTACCAACAACTCAAACTTTGAAATA
TAAAGTCAAACAACATTACAAAAGCACAAGAATCACAATCAGAACTAAAA
CCAAGTAT
Gap gap included
Contig length 1798
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 2398171
End point 2396371
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 9
Link to clone list U12435
List of clone(s) 

est1=SHI122F,1,601
est2=VHH393F,137,716
est3=VHD857F,231,760
est4=VHK583F,370,991
est5=VHD857Z,992,1795
est6=SHC246Z,1032,1627
est7=VHK583Z,1065,1796
est8=VHM496Z,1213,1559
est9=VHH393Z,1276,1800
Translated Amino Acid sequence 
***iy*ILLVVILNFFFSVNVGXWSDNNNWYDYISSSQTTLPTLNDETYLTLVSNQIVTN
HYQKAIASKIYVGGFNYSTNFNSKYGIQTALFQVKDQFAPQEVIFNISGDPLENPDFRID
AETLICAAGCTLRTLGKHFYAPNASVSIYGGVGWVIQDTLVSGFYLDYTLSLLLMSNATM
LVENAFIDLYSQWDVISQSTIVINNTLNKFVVKDGSLLNIKDSKISIYNSMLLTGNKTKL
TFENSIVDFGLVKLVPISRWVDSQLVFLNSVFDCKHQIIVSGSSLTSLILIKENSNVTFN
DEVEFDGDSLLGLYNSKLTTGKSLLFDGA---

---SKETSIKTYNQDGGLLVLDDALVHSDETINLSNGSLYGIGTINSSLSVSDGIVGDKA
IIGTLNVSGELNSENGQFIFTLDSLTNSTFINIGKNATINNSTLIIRINQYFIDSLLNPT
PTPTTTNSTNSTQVFNQTLINYENLSGTGFGEIKFGTYDPTSGEEKSLPSCYSASSSNSG
KNFGLLIRSDGCGNVGDGNNGNGNGGNGGNGGKSSLSTGAIVGIVVGIAGGAAIIGTVIY
FRNRLPTTQTLKYKVKQHYKSTRITIRTKTKY
Translated Amino Acid sequence (All Frames) 
Frame A:
ynnkfikfy*l*y*tfffl*mlxigviiiigmiilvvakqhfqh*mmkht*h*fpik**p
ttikkllhlkfmlvvliiqqtlipnmvfklhysksktnlplkk*ylilvaih*kiqises
mlkl*fvpqvvl*ehwvnismlqmqvlvfmve*vglfkipwfpdfi*tihspyfscqmlq
cwlkmhllisilngmsflkvlllsitllinl**kmdhf*ilkiqkyqftivcs*leikpn
*llkivllildwln*fqlvdglivnwsf*ivylivniklllvevh*qv*ylskkiqm*ll
mmrlnlmvilywvfiipn*qqvnhcylmvq---

---SKETSIKTYNQDGGLLVLDDALVHSDETINLSNGSLYGIGTINSSLSVSDGIVGDKA
IIGTLNVSGELNSENGQFIFTLDSLTNSTFINIGKNATINNSTLIIRINQYFIDSLLNPT
PTPTTTNSTNSTQVFNQTLINYENLSGTGFGEIKFGTYDPTSGEEKSLPSCYSASSSNSG
KNFGLLIRSDGCGNVGDGNNGNGNGGNGGNGGKSSLSTGAIVGIVVGIAGGAAIIGTVIY
FRNRLPTTQTLKYKVKQHYKSTRITIRTKTKY

Frame B:
iiinllnfiscdiklfffckcwxle****lv*ly***pnntsnik**nilnisfqsnsnq
plsksyci*nlcwwf*lfnkl*fqiwysnctipsqrpicpsrsni*y*wrsirksrfqnr
c*nfnlcrrlyfknig*tflcskckc*ylwwsrlgysrylgfrilfrlytlptshvkcyn
vg*kciy*slfsmgchfskyycyq*hs**icskrwitfky*rfkninlq*yaldwk*nqi
nf*k*yc*fwig*issn**mg**siglfk*ci*l*tsnyc*wkfinkfdtyqrkfkcnf*
**g*i*w*ffigsl*fqidnr*iivi*wck---

---pkklpsrpiikmvdy*f*mmlwftqmklliyqmvlymalvpliphyqypmvllvikl
slvh*msvvn*ilkmvnsfsl*iv*piqhllilvkmqqliiqh**lelinislivy*iqh
qhqqlqiqqiqlkylikl**imkiylvldlvklnlvpmtqqvekrnhyhhvipqvvvilv
ktlvy*levmvvemlvmvimvmvmvvmvvmvvnqvcqlvqslvl*lvllvvllllvllft
leivyqqlkl*niksnnitkaqesqselkps

Frame C:
***iy*ILLVVILNFFFSVNVGXWSDNNNWYDYISSSQTTLPTLNDETYLTLVSNQIVTN
HYQKAIASKIYVGGFNYSTNFNSKYGIQTALFQVKDQFAPQEVIFNISGDPLENPDFRID
AETLICAAGCTLRTLGKHFYAPNASVSIYGGVGWVIQDTLVSGFYLDYTLSLLLMSNATM
LVENAFIDLYSQWDVISQSTIVINNTLNKFVVKDGSLLNIKDSKISIYNSMLLTGNKTKL
TFENSIVDFGLVKLVPISRWVDSQLVFLNSVFDCKHQIIVSGSSLTSLILIKENSNVTFN
DEVEFDGDSLLGLYNSKLTTGKSLLFDGA---

---qrnfhqdl*srwwiisfr*cfgslr*ny*fikwffiwhwyh*fliisirwycw**sy
hwyikcqw*ikf*kwsihfhfr*fnqfniy*yw*kcnn**fninn*n*sifh**fiksnt
ntnnykfnkfnssi*snfnkl*kfiwywiw*n*iwyl*pnkwrreiitimlfrk***fw*
klwfin*k*wlwkcw*w**w*w*ww*ww*ww*ikfvnwcnrwycswycwwccyywycyll
*ksftnnsnfei*sqttlqkhknhnqn*nqv
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U12435-1 (Contig-U12435-1Q)
/CSM_Contig/Contig-U12435-1Q.Seq.d
         (1808 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Conti...  2968  0.0
Contig-U10957-1 (Contig-U10957-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U10941-1 (Contig-U10941-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U07559-1 (Contig-U07559-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U00318-1 (Contig-U00318-1Q) /CSM_Contig/Conti...    46  1e-04
Contig-U05595-1 (Contig-U05595-1Q) /CSM_Contig/Conti...    44  5e-04
Contig-U13820-1 (Contig-U13820-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12390-1 (Contig-U12390-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U12210-1 (Contig-U12210-1Q) /CSM_Contig/Conti...    42  0.002
Contig-U11209-1 (Contig-U11209-1Q) /CSM_Contig/Conti...    42  0.002

>Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Contig-U12435-1Q.Seq.d
          Length = 1808

 Score = 2968 bits (1497), Expect = 0.0
 Identities = 1550/1560 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    tataataataaatttattaaattttattagttgtgatattaaacnnnnnnnnnnctgtaa 60
            ||||||||||||||||||||||||||||||||||||||||||||          ||||||
Sbjct: 1    tataataataaatttattaaattttattagttgtgatattaaacttttttttttctgtaa 60

                                                                        
Query: 61   atgttgganattggagtgataataataattggtatgattatattagtagtagccaaacaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   atgttgganattggagtgataataataattggtatgattatattagtagtagccaaacaa 120

                                                                        
Query: 121  cacttccaacattaaatgatgaaacatacttaacattagtttccaatcaaatagtaacca 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  cacttccaacattaaatgatgaaacatacttaacattagtttccaatcaaatagtaacca 180

                                                                        
Query: 181  accactatcaaaaagctattgcatctaaaatttatgttggtggttttaattattcaacaa 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  accactatcaaaaagctattgcatctaaaatttatgttggtggttttaattattcaacaa 240

                                                                        
Query: 241  actttaattccaaatatggtattcaaactgcactattccaagtcaaagaccaatttgccc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  actttaattccaaatatggtattcaaactgcactattccaagtcaaagaccaatttgccc 300

                                                                        
Query: 301  ctcaagaagtaatatttaatattagtggcgatccattagaaaatccagatttcagaatcg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  ctcaagaagtaatatttaatattagtggcgatccattagaaaatccagatttcagaatcg 360

                                                                        
Query: 361  atgctgaaactttaatttgtgccgcaggttgtactttaagaacattgggtaaacatttct 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  atgctgaaactttaatttgtgccgcaggttgtactttaagaacattgggtaaacatttct 420

                                                                        
Query: 421  atgctccaaatgcaagtgttagtatttatggtggagtaggttgggttattcaagatacct 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  atgctccaaatgcaagtgttagtatttatggtggagtaggttgggttattcaagatacct 480

                                                                        
Query: 481  tggtttccggattttatttagactatacactctccctacttctcatgtcaaatgctacaa 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  tggtttccggattttatttagactatacactctccctacttctcatgtcaaatgctacaa 540

                                                                        
Query: 541  tgttggttgaaaatgcatttattgatctctattctcaatgggatgtcatttctcaaagta 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  tgttggttgaaaatgcatttattgatctctattctcaatgggatgtcatttctcaaagta 600

                                                                        
Query: 601  ctattgttatcaataacactcttaataaatttgtagtaaaagatggatcacttttaaata 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  ctattgttatcaataacactcttaataaatttgtagtaaaagatggatcacttttaaata 660

                                                                        
Query: 661  ttaaagattcaaaaatatcaatttacaatagtatgctcttgactggaaataaaaccaaat 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  ttaaagattcaaaaatatcaatttacaatagtatgctcttgactggaaataaaaccaaat 720

                                                                        
Query: 721  taacttttgaaaatagtattgttgattttggattggttaaattagttccaattagtagat 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  taacttttgaaaatagtattgttgattttggattggttaaattagttccaattagtagat 780

                                                                        
Query: 781  gggttgatagtcaattggtctttttaaatagtgtatttgattgtaaacatcaaattattg 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  gggttgatagtcaattggtctttttaaatagtgtatttgattgtaaacatcaaattattg 840

                                                                        
Query: 841  ttagtggaagttcattaacaagtttgatacttatcaaagaaaattcaaatgtaactttta 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  ttagtggaagttcattaacaagtttgatacttatcaaagaaaattcaaatgtaactttta 900

                                                                        
Query: 901  atgatgaggttgaatttgatggtgattctttattgggtctttataattccaaattgacaa 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  atgatgaggttgaatttgatggtgattctttattgggtctttataattccaaattgacaa 960

                                                                        
Query: 961  caggtaaatcattgttatttgatggtgcaagnnnnnnnnnntccaaagaaacttccatca 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  caggtaaatcattgttatttgatggtgcaagnnnnnnnnnntccaaagaaacttccatca 1020

                                                                        
Query: 1021 agacctataatcaagatggtggattattagttttagatgatgctttggttcactcagatg 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 agacctataatcaagatggtggattattagttttagatgatgctttggttcactcagatg 1080

                                                                        
Query: 1081 aaactattaatttatcaaatggttctttatatggcattggtaccattaattcctcattat 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 aaactattaatttatcaaatggttctttatatggcattggtaccattaattcctcattat 1140

                                                                        
Query: 1141 cagtatccgatggtattgttggtgataaagctatcattggtacattaaatgtcagtggtg 1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 cagtatccgatggtattgttggtgataaagctatcattggtacattaaatgtcagtggtg 1200

                                                                        
Query: 1201 aattaaattctgaaaatggtcaattcattttcactttagatagtttaaccaattcaacat 1260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aattaaattctgaaaatggtcaattcattttcactttagatagtttaaccaattcaacat 1260

                                                                        
Query: 1261 ttattaatattggtaaaaatgcaacaattaataattcaacattaataattagaattaatc 1320
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ttattaatattggtaaaaatgcaacaattaataattcaacattaataattagaattaatc 1320

                                                                        
Query: 1321 aatatttcattgatagtttattaaatccaacaccaacaccaacaactacaaattcaacaa 1380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 aatatttcattgatagtttattaaatccaacaccaacaccaacaactacaaattcaacaa 1380

                                                                        
Query: 1381 attcaactcaagtatttaatcaaactttaataaattatgaaaatttatctggtactggat 1440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 attcaactcaagtatttaatcaaactttaataaattatgaaaatttatctggtactggat 1440

                                                                        
Query: 1441 ttggtgaaattaaatttggtacctatgacccaacaagtggagaagagaaatcattaccat 1500
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 ttggtgaaattaaatttggtacctatgacccaacaagtggagaagagaaatcattaccat 1500

                                                                        
Query: 1501 catgttattccgcaagtagtagtaattctggtaaaaactttggtttattaattagaagtg 1560
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 catgttattccgcaagtagtagtaattctggtaaaaactttggtttattaattagaagtg 1560


 Score =  353 bits (178), Expect = 4e-97
 Identities = 178/178 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1631 atcaagtttgtcaactggtgcaatcgttggtattgtagttggtattgctggtggtgctgc 1690
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1631 atcaagtttgtcaactggtgcaatcgttggtattgtagttggtattgctggtggtgctgc 1690

                                                                        
Query: 1691 tattattggtactgttatttactttagaaatcgtttaccaacaactcaaactttgaaata 1750
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1691 tattattggtactgttatttactttagaaatcgtttaccaacaactcaaactttgaaata 1750

                                                                      
Query: 1751 taaagtcaaacaacattacaaaagcacaagaatcacaatcagaactaaaaccaagtat 1808
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1751 taaagtcaaacaacattacaaaagcacaagaatcacaatcagaactaaaaccaagtat 1808


>Contig-U10957-1 (Contig-U10957-1Q) /CSM_Contig/Contig-U10957-1Q.Seq.d
          Length = 1366

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 1347 ccaacaccaacaccaacaactacaaattcaa 1377
            ||||||||||||||||| ||||||| |||||
Sbjct: 273  ccaacaccaacaccaactactacaacttcaa 303


 Score = 34.2 bits (17), Expect = 0.51
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1348 caacaccaacaccaaca 1364
            |||||||||||||||||
Sbjct: 268  caacaccaacaccaaca 284


>Contig-U10941-1 (Contig-U10941-1Q) /CSM_Contig/Contig-U10941-1Q.Seq.d
          Length = 1119

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 1347 ccaacaccaacaccaacaactac 1369
            |||||||||||||||||||||||
Sbjct: 79   ccaacaccaacaccaacaactac 101


 Score = 36.2 bits (18), Expect = 0.13
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1347 ccaacaccaacaccaaca 1364
            ||||||||||||||||||
Sbjct: 73   ccaacaccaacaccaaca 90


 Score = 34.2 bits (17), Expect = 0.51
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1348 caacaccaacaccaaca 1364
            |||||||||||||||||
Sbjct: 68   caacaccaacaccaaca 84


 Score = 34.2 bits (17), Expect = 0.51
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 1348 caacaccaacaccaaca 1364
            |||||||||||||||||
Sbjct: 134  caacaccaacaccaaca 150


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 42,992
Number of Sequences: 6905
Number of extensions: 42992
Number of successful extensions: 4467
Number of sequences better than 10.0: 577
length of query: 1808
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1792
effective length of database: 5,564,391
effective search space: 9971388672
effective search space used: 9971388672
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.11.30
Homology vs DNA 
Query= Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Contig-U12435-1Q.Seq.d
         (1808 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ424541) Dictyostelium discoideum cDNA clone:ddv52e21, 5' ...  1231   0.0    1
(BJ422423) Dictyostelium discoideum cDNA clone:ddv45j23, 5' ...  1150   0.0    1
(BJ420183) Dictyostelium discoideum cDNA clone:ddv38b16, 5' ...  1043   0.0    1
(BJ395780) Dictyostelium discoideum cDNA clone:dds40k05, 5' ...  1023   0.0    2
(BJ438795) Dictyostelium discoideum cDNA clone:ddv38b16, 3' ...   517   0.0    6
(BJ443396) Dictyostelium discoideum cDNA clone:ddv52e21, 3' ...   464   0.0    6
(BJ404396) Dictyostelium discoideum cDNA clone:dds28k12, 3' ...   464   0.0    2
(BJ441165) Dictyostelium discoideum cDNA clone:ddv45j23, 3' ...   464   0.0    2
(BJ444314) Dictyostelium discoideum cDNA clone:ddv55p24, 3' ...   444   e-135  2
(BH137758) ENTNP55TF Entamoeba histolytica Sheared DNA Entam...    62   8e-05  1
(BH133787) ENTOQ50TR Entamoeba histolytica Sheared DNA Entam...    62   8e-05  1
(CX090755) EHAEI75TR E. histolytica Normalized cDNA library ...    62   8e-05  1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    40   0.017  16
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   0.032  18
(AC179501) Strongylocentrotus purpuratus clone R3-64I16, WOR...    36   0.049  11
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    38   0.077  12
(AY333897) Cotesia acuminata from Spain NADH dehydrogenase s...    48   0.11   2
(EY353776) CAWZ2302.fwd CAWZ Helobdella robusta Primary Late...    38   0.11   3
(EY387653) CAXA6879.fwd CAXA Helobdella robusta Subtracted L...    38   0.13   3
(EY349681) CAWZ17182.fwd CAWZ Helobdella robusta Primary Lat...    38   0.13   3
(EY374300) CAXA15001.fwd CAXA Helobdella robusta Subtracted ...    38   0.13   3
(EY361966) CAWZ800.fwd CAWZ Helobdella robusta Primary Late ...    38   0.13   3
(EY386553) CAXA6282.fwd CAXA Helobdella robusta Subtracted L...    38   0.14   3
(EY346923) CAWZ15341.fwd CAWZ Helobdella robusta Primary Lat...    38   0.14   3
(EY353706) CAWZ2259.fwd CAWZ Helobdella robusta Primary Late...    38   0.14   3
(EY379797) CAXA17988.fwd CAXA Helobdella robusta Subtracted ...    38   0.14   3
(EY378057) CAXA17059.fwd CAXA Helobdella robusta Subtracted ...    38   0.14   3
(EY381921) CAXA3756.fwd CAXA Helobdella robusta Subtracted L...    38   0.14   3
(EY391709) CAXA9415.fwd CAXA Helobdella robusta Subtracted L...    38   0.14   3
(EY347260) CAWZ15517.fwd CAWZ Helobdella robusta Primary Lat...    38   0.15   3
(AY429682) Dictyostelium discoideum dusty protein kinase mRN...    40   0.19   2
(AY429683) Dictyostelium discoideum dusty protein kinase gen...    40   0.20   2
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084...    40   0.24   7
(AY934834) Cotesia plutellae clone 501-510 NADH dehydrogenas...    40   0.25   2
(AY934846) Cotesia plutellae clone 641-646 NADH dehydrogenas...    40   0.25   2
(AY934845) Cotesia plutellae clone 631-636 NADH dehydrogenas...    40   0.25   2
(AY934844) Cotesia plutellae clone 611-620 NADH dehydrogenas...    40   0.25   2
(AY934842) Cotesia plutellae clone 581-583 NADH dehydrogenas...    40   0.25   2
(AY934840) Cotesia plutellae clone 561-570 NADH dehydrogenas...    40   0.25   2
(AY934839) Cotesia plutellae clone 551-560 NADH dehydrogenas...    40   0.25   2
(AY934838) Cotesia plutellae clone 541-550 NADH dehydrogenas...    40   0.25   2
(AY934837) Cotesia plutellae clone 531-540 NADH dehydrogenas...    40   0.25   2
(AY934836) Cotesia plutellae clone 521-530 NADH dehydrogenas...    40   0.25   2
(AY934835) Cotesia plutellae clone 511-520 NADH dehydrogenas...    40   0.25   2
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    44   0.28   14
(ED788212) GM_WBb0170G10.f GM_WBb Glycine max genomic clone ...    50   0.30   1
(ED731953) GM_WBb0089G22.f GM_WBb Glycine max genomic clone ...    50   0.30   1
(ED731921) GM_WBb0089G06.f GM_WBb Glycine max genomic clone ...    50   0.30   1
(ED643628) GM_WBa0056F14.r GM_WBa Glycine max genomic clone ...    50   0.30   1
(CG823559) SOYDT89TV LargeInsertSoybeanGenLib Glycine max ge...    50   0.30   1
(AC115612) Dictyostelium discoideum chromosome 2 map 6245135...    40   0.33   11
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.34   19
(AY333908) Cotesia melitaearum from Spain NADH dehydrogenase...    40   0.38   2
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    36   0.45   13
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.47   18
(AC116920) Dictyostelium discoideum chromosome 2 map 4415041...    42   0.48   7
(DV608068) EST1211064 Glossina morsitans morsitans Fat body ...    44   0.52   3
(AC117080) Dictyostelium discoideum chromosome 2 map complem...    36   0.56   10
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    34   0.58   13
(AC188237) Saimiri boliviensis boliviensis clone CH254-333A1...    38   0.63   2
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    36   0.70   15
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    46   0.71   20
(FE186744) LV_NC_RA42J15f Litopenaeus vannamei nerve cord cD...    38   0.83   2
(FE190062) LV_NC_RA51K24f Litopenaeus vannamei nerve cord cD...    38   0.84   2
(CP000246) Clostridium perfringens ATCC 13124, complete genome.    34   0.87   23
(AC111691) Rattus norvegicus clone CH230-68I7, WORKING DRAFT...    38   0.95   10
(AY082376) Dictyostelium discoideum ABC transporter ABCC.14 ...    34   0.96   5
(CS374412) Sequence 515 from Patent WO2006034879.                  48   1.2    1
(AL590784) Human DNA sequence from clone RP11-260I7 on chrom...    48   1.2    1
(AC179401) Strongylocentrotus purpuratus clone R3-60L3, WORK...    48   1.2    1
(AC179256) Strongylocentrotus purpuratus clone R3-42M3, WORK...    48   1.2    1
(EJ803175) 1093017441923 Global-Ocean-Sampling_GS-30-02-01-1...    48   1.2    1
(DX522066) GH_MBb0036A01r GH_MBb Gossypium hirsutum genomic ...    48   1.2    1
(EH697328) CCIM9145.b1_B08.ab1 CCI(LMS) chicory Cichorium in...    48   1.2    1
(DY894567) CeleSEQ14170 Cunninghamella elegans pBluescript (...    48   1.2    1
(DY893304) CeleSEQ12603 Cunninghamella elegans pBluescript (...    48   1.2    1
(DY892916) CeleSEQ12051 Cunninghamella elegans pBluescript (...    48   1.2    1
(DY891199) CeleSEQ7873 Cunninghamella elegans pBluescript (E...    48   1.2    1
(DY890951) CeleSEQ7447 Cunninghamella elegans pBluescript (E...    48   1.2    1
(DY889348) CeleSEQ10866 Cunninghamella elegans pBluescript (...    48   1.2    1
(DY889151) CeleSEQ6694 Cunninghamella elegans pBluescript (E...    48   1.2    1
(DY887462) CeleSEQ3801 Cunninghamella elegans pBluescript (E...    48   1.2    1
(DY887205) CeleSEQ3130 Cunninghamella elegans pBluescript (E...    48   1.2    1
(DY886361) CeleSEQ1985 Cunninghamella elegans pBluescript (E...    48   1.2    1
(DY885712) CeleSEQ1110 Cunninghamella elegans pBluescript (E...    48   1.2    1
(DY885401) CeleSEQ666 Cunninghamella elegans pBluescript (Ec...    48   1.2    1
(AL713894) Mouse DNA sequence from clone RP23-48J18 on chrom...    38   1.2    7
(EY356728) CAWZ4514.fwd CAWZ Helobdella robusta Primary Late...    34   1.6    3
(DX547660) GH_MBb0057O19f GH_MBb Gossypium hirsutum genomic ...    40   1.8    2
(CP000393) Trichodesmium erythraeum IMS101, complete genome.       32   1.8    2
(EK353985) 1095468342949 Global-Ocean-Sampling_GS-31-01-01-1...    40   1.9    2
(AC101510) Mus musculus chromosome 3, clone RP23-190B7, comp...    38   1.9    8
(AC101483) Mus musculus clone RP23-188H14, LOW-PASS SEQUENCE...    40   1.9    2
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    32   2.1    13
(AM445711) Vitis vinifera contig VV78X244109.2, whole genome...    38   2.4    4
(BX005076) Zebrafish DNA sequence from clone DKEY-7N16 in li...    44   2.5    5
(DD061358) Methods and nucleic acids for the analysis of  he...    36   2.7    3
(AX598920) Sequence 260 from Patent WO02077272.                    36   2.7    3
(AC128025) Rattus norvegicus clone CH230-124G14, *** SEQUENC...    38   2.7    9
(AC121768) Mus musculus BAC clone RP23-339H16 from 15, compl...    38   3.0    6

>(BJ424541) Dictyostelium discoideum cDNA clone:ddv52e21, 5' end,
           single read.
          Length = 622

 Score = 1231 bits (621), Expect = 0.0
 Identities = 621/621 (100%)
 Strand = Plus / Plus


Query: 370 ctttaatttgtgccgcaggttgtactttaagaacattgggtaaacatttctatgctccaa 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ctttaatttgtgccgcaggttgtactttaagaacattgggtaaacatttctatgctccaa 60


Query: 430 atgcaagtgttagtatttatggtggagtaggttgggttattcaagataccttggtttccg 489
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atgcaagtgttagtatttatggtggagtaggttgggttattcaagataccttggtttccg 120


Query: 490 gattttatttagactatacactctccctacttctcatgtcaaatgctacaatgttggttg 549
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gattttatttagactatacactctccctacttctcatgtcaaatgctacaatgttggttg 180


Query: 550 aaaatgcatttattgatctctattctcaatgggatgtcatttctcaaagtactattgtta 609
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaaatgcatttattgatctctattctcaatgggatgtcatttctcaaagtactattgtta 240


Query: 610 tcaataacactcttaataaatttgtagtaaaagatggatcacttttaaatattaaagatt 669
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tcaataacactcttaataaatttgtagtaaaagatggatcacttttaaatattaaagatt 300


Query: 670 caaaaatatcaatttacaatagtatgctcttgactggaaataaaaccaaattaacttttg 729
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 caaaaatatcaatttacaatagtatgctcttgactggaaataaaaccaaattaacttttg 360


Query: 730 aaaatagtattgttgattttggattggttaaattagttccaattagtagatgggttgata 789
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaaatagtattgttgattttggattggttaaattagttccaattagtagatgggttgata 420


Query: 790 gtcaattggtctttttaaatagtgtatttgattgtaaacatcaaattattgttagtggaa 849
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcaattggtctttttaaatagtgtatttgattgtaaacatcaaattattgttagtggaa 480


Query: 850 gttcattaacaagtttgatacttatcaaagaaaattcaaatgtaacttttaatgatgagg 909
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gttcattaacaagtttgatacttatcaaagaaaattcaaatgtaacttttaatgatgagg 540


Query: 910 ttgaatttgatggtgattctttattgggtctttataattccaaattgacaacaggtaaat 969
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgaatttgatggtgattctttattgggtctttataattccaaattgacaacaggtaaat 600


Query: 970 cattgttatttgatggtgcaa 990
           |||||||||||||||||||||
Sbjct: 601 cattgttatttgatggtgcaa 621

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 2,086,417,935
Number of extensions: 130105614
Number of successful extensions: 10490131
Number of sequences better than 10.0: 189
Length of query: 1808
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1784
Effective length of database: 97,308,875,965
Effective search space: 173599034721560
Effective search space used: 173599034721560
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7. 3
Homology vs Protein 
Query= Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Contig-U12435-1Q.Seq.d
         (1808 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116957_68(AC116957|pid:none) Dictyostelium discoideum chromoso...    83   4e-14
AC116989_1(AC116989|pid:none) Dictyostelium discoideum chromosom...    50   3e-04
AX553782_1(AX553782|pid:none) Sequence 116 from Patent WO0207550...    43   0.033
AC116551_59(AC116551|pid:none) Dictyostelium discoideum chromoso...    42   0.057
CP000678_1586(CP000678|pid:none) Methanobrevibacter smithii ATCC...    42   0.096
CP001173_554(CP001173|pid:none) Helicobacter pylori G27, complet...    41   0.16
CP000442_888(CP000442|pid:none) Burkholderia ambifaria AMMD chro...    40   0.28
CP000234_29(CP000234|pid:none) Lactobacillus salivarius UCC118 p...    40   0.28
EU413991_1(EU413991|pid:none) Oryzias latipes piwi-like protein ...    39   0.82
CP001133_281(CP001133|pid:none) Vibrio fischeri MJ11 chromosome ...    39   0.82
AM180355_2981(AM180355|pid:none) Clostridium difficile 630 compl...    38   1.4
CP001027_646(CP001027|pid:none) Burkholderia ambifaria MC40-6 ch...    38   1.4
CP000271_2816(CP000271|pid:none) Burkholderia xenovorans LB400 c...    37   1.8
AY281681_1(AY281681|pid:none) HIV-1 isolate 1133v2 clone W8-15B ...    37   3.1
AY281686_1(AY281686|pid:none) HIV-1 isolate 1133v3 clone D15-21 ...    37   3.1
AY281682_1(AY281682|pid:none) HIV-1 isolate 1133v2 clone W8-22B ...    37   3.1
CP001068_1826(CP001068|pid:none) Ralstonia pickettii 12J chromos...    37   3.1
AL022347_10(AL022347|pid:none) Arabidopsis thaliana DNA chromoso...    37   3.1
CP001217_912(CP001217|pid:none) Helicobacter pylori P12, complet...    36   4.1
CP000102_880(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    36   4.1
AE017263_158(AE017263|pid:none) Mesoplasma florum L1 complete ge...    36   4.1
CP000554_2482(CP000554|pid:none) Prochlorococcus marinus str. MI...    36   4.1
(Q54ED6) RecName: Full=Probable polyketide synthase 41;         ...    36   4.1
AY281674_1(AY281674|pid:none) HIV-1 isolate 1133v2 clone D15-20 ...    36   4.1
CP000094_3752(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ...    36   5.3
CP000058_308(CP000058|pid:none) Pseudomonas syringae pv. phaseol...    36   5.3
AF216702_1(AF216702|pid:none) Pseudomonas fluorescens PrtB (prtB...    35   6.9
CR382133_106(CR382133|pid:none) Debaryomyces hansenii strain CBS...    35   6.9
CP000615_1371(CP000615|pid:none) Burkholderia vietnamiensis G4 c...    35   6.9
AE000666_712(AE000666|pid:none) Methanothermobacter thermautotro...    35   6.9
F69195(F69195)cell surface glycoprotein (s-layer protein) - Meth...    35   6.9
AE008384_1927(AE008384|pid:none) Methanosarcina mazei strain Goe...    35   9.0
CP000075_3732(CP000075|pid:none) Pseudomonas syringae pv. syring...    35   9.0
AF525505_1(AF525505|pid:none) Fusobacterium nucleatum outer memb...    35   9.0
AY281685_1(AY281685|pid:none) HIV-1 isolate 1133v3 clone W8-45B ...    35   9.0

>AC116957_68(AC116957|pid:none) Dictyostelium discoideum chromosome 2
            map 1685067-2090751 strain AX4, complete sequence.
          Length = 788

 Score = 82.8 bits (203), Expect = 4e-14
 Identities = 92/423 (21%), Positives = 169/423 (39%), Gaps = 41/423 (9%)
 Frame = +3

Query: 417  FYAPNASVSIYGGVGWVIQDTLVSGFYLDYTLSLL---LMSNATMLVENAFIDLYSQW-- 581
            FY   +   +YG   +  Q    SG ++   +++    ++ N T  V N  + + + +
Sbjct: 308  FYLNQSQFLVYGHASFSSQSYFDSGLFVVNNIAIWNGWVLGNYTNFVVNGSLVINTSYAS 367

Query: 582  ----DVISQSTIVINNTLN-----------KFVVKDGSLLNIKDSKISIYNSMLLTGNKT 716
                 ++S   I +N  L             F+V D ++L +  S+  I +  L
Sbjct: 368  MVESHIVSIGDITVNGILTTTNTRLYVDQGNFIVSDNAILQLIGSEARINSGQLKIHPLA 427

Query: 717  KLTFENSIVDFGLVKLVPISRWVDSQ-LVFLNSVFDCKHQI----IVSGSSLTSLILIKE 881
             +   NS           I+  VD+   V+L+S  D  +Q     + SG   T+   +K
Sbjct: 428  YIDIVNS-------SFTLITGNVDTLGNVYLDSSSDLSNQNGTYNLYSGIYYTNDTTVKS 480

Query: 882  NSNVTFNDEVEFDGDSLLGLYNSKLTTGKSLLFDGAXXXXSKETSIKTYNQXXXXXXXXX 1061
            N+    ND V    ++ + +  +   +G +          +        N+
Sbjct: 481  NNVTVLNDGVFNVANNSVQINVAFTNSGNNSNIAQLNINNNTLFIYDFKNENGGEITLNG 540

Query: 1062 XXXHSDETINLSNGSLYGIGTINSSLSVSDGIVGDKAIIGTLNVSGEL-----NSENGQF 1226
                SD +I L+ GS+ G G+ N+S++ S+G  G K+ +   N++G+      ++ N +
Sbjct: 541  GTFSSDNSIQLNGGSIKGSGSFNTSINQSNGQFGSKSTVNNFNITGDFIQSNNSNNNTKI 600

Query: 1227 IFTLDSLTNSTFINIGKNATINNSTLIIRINQYFIDXXXXXXXXXXXXXXXXXXQVFNQT 1406
            I  +DSL + + +NIG  A IN   + IRINQ  +                   Q  + +
Sbjct: 601  IIVIDSLDSFSTLNIGNLADING-IIEIRINQDILKNLNNNNNNNNNLESNLSSQSGSSS 659

Query: 1407 ---------LINYENLSGTGFGEIKFGTYDPTSGEEKSLP--SCYSASSSNSGKNFGLLI 1553
                     LI+Y + +   F  I+F +YDP SG E  +   SC    S +   +F +L+
Sbjct: 660  DGIKSASFNLISYNSKTSNSFNNIQFKSYDPKSGSESDIDKNSCIQPKSKSGSSSFSVLL 719

Query: 1554 RSD 1562
              +
Sbjct: 720  EQN 722

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,386,104,949
Number of extensions: 43025801
Number of successful extensions: 112817
Number of sequences better than 10.0: 35
Number of HSP's gapped: 112733
Number of HSP's successfully gapped: 36
Length of query: 602
Length of database: 1,051,180,864
Length adjustment: 135
Effective length of query: 467
Effective length of database: 614,245,399
Effective search space: 286852601333
Effective search space used: 286852601333
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.93  gvh: 0.46  alm: 0.23  top: 0.33  tms: 0.13  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U12435-1 is end
VS (DIR, S) 0
VH (FL, L) 4
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 2
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0