Contig-U12567-1 |
Contig ID |
Contig-U12567-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
gap included |
Contig length |
1481 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
5992741 |
End point |
5994203 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
2 |
Link to clone list |
U12567 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12. 2 |
Homology vs DNA |
Query= Contig-U12567-1 (Contig-U12567-1Q) /CSM_Contig/Contig-U12567-1Q.Seq.d (1491 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ427821) Dictyostelium discoideum cDNA clone:ddv63p14, 5' ... 1116 0.0 1 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 1112 0.0 1 (BJ446745) Dictyostelium discoideum cDNA clone:ddv63p14, 3' ... 1092 0.0 2 (AC164963) Bos taurus clone CH240-157M20, WORKING DRAFT SEQU... 40 0.003 8 (DE198577) Branchiostoma floridae DNA, clone: CH302-082_O15_... 52 0.062 1 (AC207485) Populus trichocarpa clone Pop1-94B4, complete seq... 38 0.16 5 (BX927258) Zebrafish DNA sequence from clone CH211-279M15 in... 50 0.24 1 (CE058290) tigr-gss-dog-17000322463222 Dog Library Canis lup... 50 0.24 1 (AM461824) Vitis vinifera contig VV78X267550.21, whole genom... 34 0.59 2 (AM430362) Vitis vinifera contig VV78X237158.2, whole genome... 34 0.59 2 (AM438003) Vitis vinifera, whole genome shotgun sequence, co... 34 0.60 2 (AM450495) Vitis vinifera contig VV78X061157.4, whole genome... 34 0.64 2 (AM437430) Vitis vinifera contig VV78X124369.3, whole genome... 34 0.65 2 (AM489387) Vitis vinifera contig VV78X002339.3, whole genome... 34 0.68 2 (AM475700) Vitis vinifera contig VV78X119020.7, whole genome... 48 0.97 1 (AY484460) Dictyostelium discoideum kinesin family member 3 ... 48 0.97 1 (AY162212) Dictyostelium discoideum kinesin 1 gene, partial ... 48 0.97 1 (AC008502) Homo sapiens chromosome 5 clone CTC-442G11, compl... 48 0.97 1 (AC097880) Rattus norvegicus clone CH230-81J7, *** SEQUENCIN... 48 0.97 1 (AC069033) Homo sapiens clone RP11-456A17, WORKING DRAFT SEQ... 48 0.97 1 (AC217456) Peromyscus maniculatus rufinus clone CH233-248O4,... 48 0.97 1 (DE100933) Oryzias latipes DNA, clone: ola1-133O20.R, genomi... 48 0.97 1 (EK229753) 1095460174827 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.2 2 (EK367627) 1095469404194 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.3 2 (AC147582) Otolemur garnettii clone CH256-374B11, WORKING DR... 34 1.5 7 (AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 1.5 14 (DU511035) 1098609887584 CHORI-243 Ovis aries genomic clone ... 30 1.9 4 (DQ770992) Synthetic construct Yersinia pestis clone FLH0132... 38 2.2 2 (AC207707) Glycine tomentella clone gtd1-153c22, WORKING DRA... 46 2.6 6 (AP009879) Lotus japonicus genomic DNA, chromosome 1, clone:... 44 2.7 4 (EJ323265) 1095403437004 Global-Ocean-Sampling_GS-27-01-01-1... 40 3.4 2 (EJ094749) 1095460271478 Global-Ocean-Sampling_GS-26-01-01-1... 38 3.6 2 (AC200713) Macaca mulatta BAC CH250-310E12 (Children's Hosp... 46 3.8 1 (DQ082786) Delias iltis voucher MFB-00-P108 cytochrome oxida... 46 3.8 1 (DQ082781) Delias eichhorni voucher MFB-00-P078 cytochrome o... 46 3.8 1 (AY919287) Delias eichhorni cytochrome oxidase subunit I (CO... 46 3.8 1 (AL449106) Human DNA sequence from clone RP11-428K3 on chrom... 46 3.8 1 (CU914344) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.8 1 (AP009945) Lotus japonicus genomic DNA, chromosome 6, clone:... 46 3.8 1 (AC207708) Glycine tomentella clone gtt1-289d13, WORKING DRA... 46 3.8 1 (AC200723) Macaca mulatta clone CH250-167F24, WORKING DRAFT ... 46 3.8 1 (CG821391) SOYBB56TH LargeInsertSoybeanGenLib Glycine max ge... 46 3.8 1 (DT512935) WS02420.B21_K13 PTxD-ICC-N-A-14 Populus trichocar... 46 3.8 1 (DT508321) WS02420.BR_K13 PTxD-ICC-N-A-14 Populus trichocarp... 46 3.8 1 (EW310200) rpldo0106_d24.y1 ldo Sus scrofa cDNA 5', mRNA seq... 46 3.8 1 (CP000728) Clostridium botulinum F str. Langeland, complete ... 46 3.8 1 (Z29117) Caenorhabditis elegans Cosmid C48B4. 36 4.3 4 (GC533581) Sequence 12701 from patent US 7411051. 38 4.6 2 (EA750842) Sequence 12701 from patent US 7368531. 38 4.6 2 (EK062373) 1092960095035 Global-Ocean-Sampling_GS-31-01-01-1... 44 4.9 2 (EJ794062) 1093017391057 Global-Ocean-Sampling_GS-30-02-01-1... 36 5.7 2 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 6.0 11 (DQ832181) Clostridium taeniosporum strain I/K P29c (p29c) g... 32 6.1 4 (AC183874) Felis catus clone RP86-440K14, WORKING DRAFT SEQU... 34 6.3 8 (AP009974) Lotus japonicus genomic DNA, chromosome 5, clone:... 44 6.5 4 (AC222779) Bos taurus clone CH240-439B21, WORKING DRAFT SEQU... 32 6.8 2 (AC174754) Bos taurus clone CH240-90B5, WORKING DRAFT SEQUEN... 34 7.0 2 (AC161010) Pan troglodytes BAC clone CH251-501B6 from chromo... 32 7.1 2 (AM474842) Vitis vinifera, whole genome shotgun sequence, co... 34 8.0 2 (AQ134529) HS_3051_B2_G11_MR CIT Approved Human Genomic Sper... 42 8.2 2 (AM469082) Vitis vinifera, whole genome shotgun sequence, co... 32 8.3 2 (EU637017) Adineta vaga glycoprotein gene, partial cds; and ... 42 9.6 5
>(BJ427821) Dictyostelium discoideum cDNA clone:ddv63p14, 5' end, single read. Length = 697
Score = 1116 bits (563), Expect = 0.0 Identities = 563/563 (100%) Strand = Plus / Plus
Query: 1 agtgcatacagacaacaaccaatctcacaagcggcaggcggtgcaagtagacaattaacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agtgcatacagacaacaaccaatctcacaagcggcaggcggtgcaagtagacaattaacc 60
Query: 61 gacctccaagaacaagtacgtcaaaaggatgcatctattcaagagttaaatataaagaat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gacctccaagaacaagtacgtcaaaaggatgcatctattcaagagttaaatataaagaat 120
Query: 121 agacgtttggaaagagatcttcaagataaggatcaagagattgcagatcaaactgaacaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 agacgtttggaaagagatcttcaagataaggatcaagagattgcagatcaaactgaacaa 180
Query: 181 gttaaatactatcaagaacaagttaaatctgctcaatccgctgcacaaaaagctattgct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gttaaatactatcaagaacaagttaaatctgctcaatccgctgcacaaaaagctattgct 240
Query: 241 gccgcagctgcagcatcctcctcatcaagtggaccatcaaatgaagaggcacaagaggag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gccgcagctgcagcatcctcctcatcaagtggaccatcaaatgaagaggcacaagaggag 300
Query: 301 atcgcatacttaaagagagaaatacaattattgaaggatcaacaacaatcatcatcggtt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 atcgcatacttaaagagagaaatacaattattgaaggatcaacaacaatcatcatcggtt 360
Query: 361 gcagttggtggtggtacattagagttaaagagaagaattcaagatcttaccagagaggtt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gcagttggtggtggtacattagagttaaagagaagaattcaagatcttaccagagaggtt 420
Query: 421 aaagagaaagacgatgcattggctaaattgaaattgggtggatcaccaacatcagcaggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aaagagaaagacgatgcattggctaaattgaaattgggtggatcaccaacatcagcaggt 480
Query: 481 ggttcattatcatcaattgccgcacaaacctctagtaatttaaccattacaaaccttgag 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ggttcattatcatcaattgccgcacaaacctctagtaatttaaccattacaaaccttgag 540
Query: 541 aaacaaaacacagaattgaataa 563 ||||||||||||||||||||||| Sbjct: 541 aaacaaaacacagaattgaataa 563
Score = 113 bits (57), Expect(2) = 2e-20 Identities = 57/57 (100%) Strand = Plus / Plus
Query: 640 gcacaaaagaagatcaatagtgttaccaattcaccaccaccatcagtcattaccaca 696 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 640 gcacaaaagaagatcaatagtgttaccaattcaccaccaccatcagtcattaccaca 696
Score = 26.3 bits (13), Expect(2) = 2e-20 Identities = 13/13 (100%) Strand = Plus / Plus
Query: 175 gaacaagttaaat 187 ||||||||||||| Sbjct: 196 gaacaagttaaat 208
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,679,096,427 Number of extensions: 106451058 Number of successful extensions: 8988783 Number of sequences better than 10.0: 63 Length of query: 1491 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1467 Effective length of database: 97,308,875,965 Effective search space: 142752121040655 Effective search space used: 142752121040655 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7. 3 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |