Contig-U12567-1
Contig ID Contig-U12567-1
Contig update 2002.12.18
Contig sequence
>Contig-U12567-1 (Contig-U12567-1Q) /CSM_Contig/Contig-U12567-1Q.Seq.d
AGTGCATACAGACAACAACCAATCTCACAAGCGGCAGGCGGTGCAAGTAG
ACAATTAACCGACCTCCAAGAACAAGTACGTCAAAAGGATGCATCTATTC
AAGAGTTAAATATAAAGAATAGACGTTTGGAAAGAGATCTTCAAGATAAG
GATCAAGAGATTGCAGATCAAACTGAACAAGTTAAATACTATCAAGAACA
AGTTAAATCTGCTCAATCCGCTGCACAAAAAGCTATTGCTGCCGCAGCTG
CAGCATCCTCCTCATCAAGTGGACCATCAAATGAAGAGGCACAAGAGGAG
ATCGCATACTTAAAGAGAGAAATACAATTATTGAAGGATCAACAACAATC
ATCATCGGTTGCAGTTGGTGGTGGTACATTAGAGTTAAAGAGAAGAATTC
AAGATCTTACCAGAGAGGTTAAAGAGAAAGACGATGCATTGGCTAAATTG
AAATTGGGTGGATCACCAACATCAGCAGGTGGTTCATTATCATCAATTGC
CGCACAAACCTCTAGTAATTTAACCATTACAAACCTTGAGAAACAAAACA
CAGAATTGAATAAAACATTATTAACACAACAACAAGAGATCGATAGATCA
AAACAAGAGATTCAACAATTACAACAACAACTTTCACAAGCACAAAAGAA
GATCAATAGTGTTACCAATTCACCACCACCATCAGTCATTACCACAGNNN
NNNNNN----------NNNNNNNNNNTTATCAACTCGAAAACNTTTTAAG
AGAATCCTACTCATTACTTTTACATAGTATTTATAACAAGTTAAGACCAA
AATTAACAAAAATAATTAGTTTTGGTACATGTATTTTAGATAAAAAAACA
TTTTCAGCAGCAGAAAATGATGCAGATATTAATAAGATTTGTAATATTTT
ACAAAAGTATATAAATTTATTAAAGGATAAATTTATTTTTGATTCAATTA
TTCAACAATTCTTTTCACAAACTTTCCATTTCATTAGTTACACATTATTA
AATGAAGTTTTAAATGGTGAGAATTATTGTACACCAAGTTCAGGTTTCAA
AATTAAATTAAGTTTATCTAAAATGGATGATTGGTTATCTTCATCAGAAG
AAAGAGAATTACTTTTACCAGCAAGAGATCATTTTATGTCAATCATTGAA
ACTGCTAATCTTATGGTAATCGATAAATCAATTTTCACAGATTCTGATAG
TGTTATCTCTGCTTTTGAAACTTTGAATATCCTCCAAATTAAAAAACTTT
TAGAAATCTGGAAACCTGATAATCTCTCACCTGATCCAATTCCAAAGAAA
ATCATTGCAAGTTTAAATCAACAATTGGACTTAAATACTCATCAAAGAAA
TCTTGTAGTTGATCCAACAATTTTAATTGATGTTCAACCAAAACTCTCTT
AAAATTTAAAAAAATAAAAATTAAAAATAAAAATAAANATAGTAATAATA
ATAATAATAATAANNATAGAAAACAAATAAAATAAAATAAA

Gap gap included
Contig length 1481
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5992741
End point 5994203
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 2
Link to clone list U12567
List of clone(s)

est1=VHQ456F,1,697
est2=VHQ456Z,698,1463
Translated Amino Acid sequence
SAYRQQPISQAAGGASRQLTDLQEQVRQKDASIQELNIKNRRLERDLQDKDQEIADQTEQ
VKYYQEQVKSAQSAAQKAIAAAAAASSSSSGPSNEEAQEEIAYLKREIQLLKDQQQSSSV
AVGGGTLELKRRIQDLTREVKEKDDALAKLKLGGSPTSAGGSLSSIAAQTSSNLTITNLE
KQNTELNKTLLTQQQEIDRSKQEIQQLQQQLSQAQKKINSVTNSPPPSVITTXXX---

---XXXYQLENXLRESYSLLLHSIYNKLRPKLTKIISFGTCILDKKTFSAAENDADINKI
CNILQKYINLLKDKFIFDSIIQQFFSQTFHFISYTLLNEVLNGENYCTPSSGFKIKLSLS
KMDDWLSSSEERELLLPARDHFMSIIETANLMVIDKSIFTDSDSVISAFETLNILQIKKL
LEIWKPDNLSPDPIPKKIIASLNQQLDLNTHQRNLVVDPTILIDVQPKLS*nlkk*klki
kixiviiiiiixienk*nki


Translated Amino Acid sequence (All Frames)
Frame A:
SAYRQQPISQAAGGASRQLTDLQEQVRQKDASIQELNIKNRRLERDLQDKDQEIADQTEQ
VKYYQEQVKSAQSAAQKAIAAAAAASSSSSGPSNEEAQEEIAYLKREIQLLKDQQQSSSV
AVGGGTLELKRRIQDLTREVKEKDDALAKLKLGGSPTSAGGSLSSIAAQTSSNLTITNLE
KQNTELNKTLLTQQQEIDRSKQEIQQLQQQLSQAQKKINSVTNSPPPSVITTXXX---

---xxxxinsktf*enpthyfyivfits*dqn*qk*lvlvhvf*ikkhfqqqkmmqilir
fvifyksi*iy*rinlfliqlfnnsfhklsislvthy*mkf*mvriivhqvqvskln*vy
lkwmigylhqkkenyfyqqeiilcqslkllilw*sinqfsqilivlslllkl*issklkn
f*ksgnliishliqfqrkslqv*innwt*ilikeil*liqqf*lmfnqnslki*knkn*k
*k*x********x*ktnkik*

Frame B:
vhtdnnqshkrqavqvdn*ptsknkyvkrmhlfks*i*ridvwkeifkirikrlqiklnk
lntiknklnllnplhkklllpqlqhpphqvdhqmkrhkrrsht*rekyny*rinnnhhrl
qlvvvh*s*reefkilperlkrktmhwln*nwvdhqhqqvvhyhqlphkplvi*plqtlr
nktqn*ikhy*hnnkrsidqnkrfnnynnnfhkhkrrsivlpihhhhqslpqxxx---

---xxxlstrkxfkrillitft*yl*qvktkinknn*fwymyfr*knifssrk*cry**d
l*yftkvykfikg*iyf*fnystilftnfpfh*lhiik*sfkw*ellytkfrfqn*ikfi
*ng*lvifirrkritftskrsfyvnh*nc*sygnr*infhrf**cylcf*nfeyppn*kt
frnlet**slt*snskenhckfkstiglkysskkscs*snnfn*cstktllkfkkikikn
knkxsnnnnnnxxrkqik*nk

Frame C:
ciqtttnltsgrrck*tinrpprtstskgciysrvkyke*tfgkrssr*gsrdcrsn*ts
*ilsrts*icsirctksyccrscsillikwtik*rgtrgdrilkerntiiegsttiiigc
swwwyirvkeknsrsyqrg*rerrcig*ieigwitnisrwfiiincrtnl**fnhykp*e
tkhrie*niintttrdr*iktrdstittttftstkedq*cyqftttishyhxxx---

---XXXYQLENXLRESYSLLLHSIYNKLRPKLTKIISFGTCILDKKTFSAAENDADINKI
CNILQKYINLLKDKFIFDSIIQQFFSQTFHFISYTLLNEVLNGENYCTPSSGFKIKLSLS
KMDDWLSSSEERELLLPARDHFMSIIETANLMVIDKSIFTDSDSVISAFETLNILQIKKL
LEIWKPDNLSPDPIPKKIIASLNQQLDLNTHQRNLVVDPTILIDVQPKLS*nlkk*klki
kixiviiiiiixienk*nki

own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U12567-1 (Contig-U12567-1Q)
/CSM_Contig/Contig-U12567-1Q.Seq.d
(1491 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U12567-1 (Contig-U12567-1Q) /CSM_Contig/Conti... 1287 0.0
Contig-U05568-1 (Contig-U05568-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U12236-1 (Contig-U12236-1Q) /CSM_Contig/Conti... 38 0.027
Contig-U03468-1 (Contig-U03468-1Q) /CSM_Contig/Conti... 38 0.027
Contig-U13979-1 (Contig-U13979-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U12283-1 (Contig-U12283-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U11723-1 (Contig-U11723-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U11084-1 (Contig-U11084-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U10675-1 (Contig-U10675-1Q) /CSM_Contig/Conti... 36 0.11
Contig-U05254-1 (Contig-U05254-1Q) /CSM_Contig/Conti... 36 0.11

>Contig-U12567-1 (Contig-U12567-1Q) /CSM_Contig/Contig-U12567-1Q.Seq.d
Length = 1491

Score = 1287 bits (649), Expect = 0.0
Identities = 666/673 (98%)
Strand = Plus / Plus


Query: 727 ttatcaactcgaaaacnttttaagagaatcctactcattacttttacatagtatttataa 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttatcaactcgaaaacnttttaagagaatcctactcattacttttacatagtatttataa 786


Query: 787 caagttaagaccaaaattaacaaaaataattagttttggtacatgtattttagatnnnnn 846
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 caagttaagaccaaaattaacaaaaataattagttttggtacatgtattttagataaaaa 846


Query: 847 nncattttcagcagcagaaaatgatgcagatattaataagatttgtaatattttacaaaa 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 aacattttcagcagcagaaaatgatgcagatattaataagatttgtaatattttacaaaa 906


Query: 907 gtatataaatttattaaaggataaatttatttttgattcaattattcaacaattcttttc 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 gtatataaatttattaaaggataaatttatttttgattcaattattcaacaattcttttc 966


Query: 967 acaaactttccatttcattagttacacattattaaatgaagttttaaatggtgagaatta 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 acaaactttccatttcattagttacacattattaaatgaagttttaaatggtgagaatta 1026


Query: 1027 ttgtacaccaagttcaggtttcaaaattaaattaagtttatctaaaatggatgattggtt 1086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 ttgtacaccaagttcaggtttcaaaattaaattaagtttatctaaaatggatgattggtt 1086


Query: 1087 atcttcatcagaagaaagagaattacttttaccagcaagagatcattttatgtcaatcat 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 atcttcatcagaagaaagagaattacttttaccagcaagagatcattttatgtcaatcat 1146


Query: 1147 tgaaactgctaatcttatggtaatcgataaatcaattttcacagattctgatagtgttat 1206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 tgaaactgctaatcttatggtaatcgataaatcaattttcacagattctgatagtgttat 1206


Query: 1207 ctctgcttttgaaactttgaatatcctccaaattaaaaaacttttagaaatctggaaacc 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 ctctgcttttgaaactttgaatatcctccaaattaaaaaacttttagaaatctggaaacc 1266


Query: 1267 tgataatctctcacctgatccaattccaaagaaaatcattgcaagtttaaatcaacaatt 1326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 tgataatctctcacctgatccaattccaaagaaaatcattgcaagtttaaatcaacaatt 1326


Query: 1327 ggacttaaatactcatcaaagaaatcttgtagttgatccaacaattttaattgatgttca 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 ggacttaaatactcatcaaagaaatcttgtagttgatccaacaattttaattgatgttca 1386


Query: 1387 accaaaactctct 1399
|||||||||||||
Sbjct: 1387 accaaaactctct 1399


Score = 1142 bits (576), Expect = 0.0
Identities = 576/576 (100%)
Strand = Plus / Plus


Query: 1 agtgcatacagacaacaaccaatctcacaagcggcaggcggtgcaagtagacaattaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgcatacagacaacaaccaatctcacaagcggcaggcggtgcaagtagacaattaacc 60


Query: 61 gacctccaagaacaagtacgtcaaaaggatgcatctattcaagagttaaatataaagaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacctccaagaacaagtacgtcaaaaggatgcatctattcaagagttaaatataaagaat 120


Query: 121 agacgtttggaaagagatcttcaagataaggatcaagagattgcagatcaaactgaacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agacgtttggaaagagatcttcaagataaggatcaagagattgcagatcaaactgaacaa 180


Query: 181 gttaaatactatcaagaacaagttaaatctgctcaatccgctgcacaaaaagctattgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttaaatactatcaagaacaagttaaatctgctcaatccgctgcacaaaaagctattgct 240


Query: 241 gccgcagctgcagcatcctcctcatcaagtggaccatcaaatgaagaggcacaagaggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gccgcagctgcagcatcctcctcatcaagtggaccatcaaatgaagaggcacaagaggag 300


Query: 301 atcgcatacttaaagagagaaatacaattattgaaggatcaacaacaatcatcatcggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcgcatacttaaagagagaaatacaattattgaaggatcaacaacaatcatcatcggtt 360


Query: 361 gcagttggtggtggtacattagagttaaagagaagaattcaagatcttaccagagaggtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcagttggtggtggtacattagagttaaagagaagaattcaagatcttaccagagaggtt 420


Query: 421 aaagagaaagacgatgcattggctaaattgaaattgggtggatcaccaacatcagcaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaagagaaagacgatgcattggctaaattgaaattgggtggatcaccaacatcagcaggt 480


Query: 481 ggttcattatcatcaattgccgcacaaacctctagtaatttaaccattacaaaccttgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggttcattatcatcaattgccgcacaaacctctagtaatttaaccattacaaaccttgag 540


Query: 541 aaacaaaacacagaattgaataaaacattattaaca 576
||||||||||||||||||||||||||||||||||||
Sbjct: 541 aaacaaaacacagaattgaataaaacattattaaca 576


Score = 115 bits (58), Expect = 1e-25
Identities = 58/58 (100%)
Strand = Plus / Plus


Query: 640 gcacaaaagaagatcaatagtgttaccaattcaccaccaccatcagtcattaccacag 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gcacaaaagaagatcaatagtgttaccaattcaccaccaccatcagtcattaccacag 697


>Contig-U05568-1 (Contig-U05568-1Q) /CSM_Contig/Contig-U05568-1Q.Seq.d
Length = 667

Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Plus


Query: 1140 caatcattgaaactgctaatcttatggtaatcgataaa 1177
|||| ||||||||||||||||| ||||||| ||||||
Sbjct: 252 caatgattgaaactgctaatctattggtaatggataaa 289


>Contig-U12236-1 (Contig-U12236-1Q) /CSM_Contig/Contig-U12236-1Q.Seq.d
Length = 1861

Score = 38.2 bits (19), Expect = 0.027
Identities = 19/19 (100%)
Strand = Plus / Plus


Query: 363 agttggtggtggtacatta 381
|||||||||||||||||||
Sbjct: 365 agttggtggtggtacatta 383


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,141
Number of Sequences: 6905
Number of extensions: 22141
Number of successful extensions: 2288
Number of sequences better than 10.0: 217
length of query: 1491
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1475
effective length of database: 5,564,391
effective search space: 8207476725
effective search space used: 8207476725
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12. 2
Homology vs DNA
Query= Contig-U12567-1 (Contig-U12567-1Q) /CSM_Contig/Contig-U12567-1Q.Seq.d
(1491 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ427821) Dictyostelium discoideum cDNA clone:ddv63p14, 5' ... 1116 0.0 1
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 1112 0.0 1
(BJ446745) Dictyostelium discoideum cDNA clone:ddv63p14, 3' ... 1092 0.0 2
(AC164963) Bos taurus clone CH240-157M20, WORKING DRAFT SEQU... 40 0.003 8
(DE198577) Branchiostoma floridae DNA, clone: CH302-082_O15_... 52 0.062 1
(AC207485) Populus trichocarpa clone Pop1-94B4, complete seq... 38 0.16 5
(BX927258) Zebrafish DNA sequence from clone CH211-279M15 in... 50 0.24 1
(CE058290) tigr-gss-dog-17000322463222 Dog Library Canis lup... 50 0.24 1
(AM461824) Vitis vinifera contig VV78X267550.21, whole genom... 34 0.59 2
(AM430362) Vitis vinifera contig VV78X237158.2, whole genome... 34 0.59 2
(AM438003) Vitis vinifera, whole genome shotgun sequence, co... 34 0.60 2
(AM450495) Vitis vinifera contig VV78X061157.4, whole genome... 34 0.64 2
(AM437430) Vitis vinifera contig VV78X124369.3, whole genome... 34 0.65 2
(AM489387) Vitis vinifera contig VV78X002339.3, whole genome... 34 0.68 2
(AM475700) Vitis vinifera contig VV78X119020.7, whole genome... 48 0.97 1
(AY484460) Dictyostelium discoideum kinesin family member 3 ... 48 0.97 1
(AY162212) Dictyostelium discoideum kinesin 1 gene, partial ... 48 0.97 1
(AC008502) Homo sapiens chromosome 5 clone CTC-442G11, compl... 48 0.97 1
(AC097880) Rattus norvegicus clone CH230-81J7, *** SEQUENCIN... 48 0.97 1
(AC069033) Homo sapiens clone RP11-456A17, WORKING DRAFT SEQ... 48 0.97 1
(AC217456) Peromyscus maniculatus rufinus clone CH233-248O4,... 48 0.97 1
(DE100933) Oryzias latipes DNA, clone: ola1-133O20.R, genomi... 48 0.97 1
(EK229753) 1095460174827 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.2 2
(EK367627) 1095469404194 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.3 2
(AC147582) Otolemur garnettii clone CH256-374B11, WORKING DR... 34 1.5 7
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge... 34 1.5 14
(DU511035) 1098609887584 CHORI-243 Ovis aries genomic clone ... 30 1.9 4
(DQ770992) Synthetic construct Yersinia pestis clone FLH0132... 38 2.2 2
(AC207707) Glycine tomentella clone gtd1-153c22, WORKING DRA... 46 2.6 6
(AP009879) Lotus japonicus genomic DNA, chromosome 1, clone:... 44 2.7 4
(EJ323265) 1095403437004 Global-Ocean-Sampling_GS-27-01-01-1... 40 3.4 2
(EJ094749) 1095460271478 Global-Ocean-Sampling_GS-26-01-01-1... 38 3.6 2
(AC200713) Macaca mulatta BAC CH250-310E12 (Children's Hosp... 46 3.8 1
(DQ082786) Delias iltis voucher MFB-00-P108 cytochrome oxida... 46 3.8 1
(DQ082781) Delias eichhorni voucher MFB-00-P078 cytochrome o... 46 3.8 1
(AY919287) Delias eichhorni cytochrome oxidase subunit I (CO... 46 3.8 1
(AL449106) Human DNA sequence from clone RP11-428K3 on chrom... 46 3.8 1
(CU914344) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 3.8 1
(AP009945) Lotus japonicus genomic DNA, chromosome 6, clone:... 46 3.8 1
(AC207708) Glycine tomentella clone gtt1-289d13, WORKING DRA... 46 3.8 1
(AC200723) Macaca mulatta clone CH250-167F24, WORKING DRAFT ... 46 3.8 1
(CG821391) SOYBB56TH LargeInsertSoybeanGenLib Glycine max ge... 46 3.8 1
(DT512935) WS02420.B21_K13 PTxD-ICC-N-A-14 Populus trichocar... 46 3.8 1
(DT508321) WS02420.BR_K13 PTxD-ICC-N-A-14 Populus trichocarp... 46 3.8 1
(EW310200) rpldo0106_d24.y1 ldo Sus scrofa cDNA 5', mRNA seq... 46 3.8 1
(CP000728) Clostridium botulinum F str. Langeland, complete ... 46 3.8 1
(Z29117) Caenorhabditis elegans Cosmid C48B4. 36 4.3 4
(GC533581) Sequence 12701 from patent US 7411051. 38 4.6 2
(EA750842) Sequence 12701 from patent US 7368531. 38 4.6 2
(EK062373) 1092960095035 Global-Ocean-Sampling_GS-31-01-01-1... 44 4.9 2
(EJ794062) 1093017391057 Global-Ocean-Sampling_GS-30-02-01-1... 36 5.7 2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 6.0 11
(DQ832181) Clostridium taeniosporum strain I/K P29c (p29c) g... 32 6.1 4
(AC183874) Felis catus clone RP86-440K14, WORKING DRAFT SEQU... 34 6.3 8
(AP009974) Lotus japonicus genomic DNA, chromosome 5, clone:... 44 6.5 4
(AC222779) Bos taurus clone CH240-439B21, WORKING DRAFT SEQU... 32 6.8 2
(AC174754) Bos taurus clone CH240-90B5, WORKING DRAFT SEQUEN... 34 7.0 2
(AC161010) Pan troglodytes BAC clone CH251-501B6 from chromo... 32 7.1 2
(AM474842) Vitis vinifera, whole genome shotgun sequence, co... 34 8.0 2
(AQ134529) HS_3051_B2_G11_MR CIT Approved Human Genomic Sper... 42 8.2 2
(AM469082) Vitis vinifera, whole genome shotgun sequence, co... 32 8.3 2
(EU637017) Adineta vaga glycoprotein gene, partial cds; and ... 42 9.6 5

>(BJ427821) Dictyostelium discoideum cDNA clone:ddv63p14, 5' end,
single read.
Length = 697

Score = 1116 bits (563), Expect = 0.0
Identities = 563/563 (100%)
Strand = Plus / Plus


Query: 1 agtgcatacagacaacaaccaatctcacaagcggcaggcggtgcaagtagacaattaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtgcatacagacaacaaccaatctcacaagcggcaggcggtgcaagtagacaattaacc 60


Query: 61 gacctccaagaacaagtacgtcaaaaggatgcatctattcaagagttaaatataaagaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gacctccaagaacaagtacgtcaaaaggatgcatctattcaagagttaaatataaagaat 120


Query: 121 agacgtttggaaagagatcttcaagataaggatcaagagattgcagatcaaactgaacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agacgtttggaaagagatcttcaagataaggatcaagagattgcagatcaaactgaacaa 180


Query: 181 gttaaatactatcaagaacaagttaaatctgctcaatccgctgcacaaaaagctattgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gttaaatactatcaagaacaagttaaatctgctcaatccgctgcacaaaaagctattgct 240


Query: 241 gccgcagctgcagcatcctcctcatcaagtggaccatcaaatgaagaggcacaagaggag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gccgcagctgcagcatcctcctcatcaagtggaccatcaaatgaagaggcacaagaggag 300


Query: 301 atcgcatacttaaagagagaaatacaattattgaaggatcaacaacaatcatcatcggtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atcgcatacttaaagagagaaatacaattattgaaggatcaacaacaatcatcatcggtt 360


Query: 361 gcagttggtggtggtacattagagttaaagagaagaattcaagatcttaccagagaggtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcagttggtggtggtacattagagttaaagagaagaattcaagatcttaccagagaggtt 420


Query: 421 aaagagaaagacgatgcattggctaaattgaaattgggtggatcaccaacatcagcaggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaagagaaagacgatgcattggctaaattgaaattgggtggatcaccaacatcagcaggt 480


Query: 481 ggttcattatcatcaattgccgcacaaacctctagtaatttaaccattacaaaccttgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ggttcattatcatcaattgccgcacaaacctctagtaatttaaccattacaaaccttgag 540


Query: 541 aaacaaaacacagaattgaataa 563
|||||||||||||||||||||||
Sbjct: 541 aaacaaaacacagaattgaataa 563

Score = 113 bits (57), Expect(2) = 2e-20
Identities = 57/57 (100%)
Strand = Plus / Plus


Query: 640 gcacaaaagaagatcaatagtgttaccaattcaccaccaccatcagtcattaccaca 696
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gcacaaaagaagatcaatagtgttaccaattcaccaccaccatcagtcattaccaca 696

Score = 26.3 bits (13), Expect(2) = 2e-20
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 175 gaacaagttaaat 187
|||||||||||||
Sbjct: 196 gaacaagttaaat 208

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,679,096,427
Number of extensions: 106451058
Number of successful extensions: 8988783
Number of sequences better than 10.0: 63
Length of query: 1491
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1467
Effective length of database: 97,308,875,965
Effective search space: 142752121040655
Effective search space used: 142752121040655
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7. 3
Homology vs Protein
Query= Contig-U12567-1 (Contig-U12567-1Q) /CSM_Contig/Contig-U12567-1Q.Seq.d
(1491 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(P54696) RecName: Full=Myosin-H heavy chain; AltName: Full=Myosi... 53 3e-05
CP001129_1836(CP001129|pid:none) Streptococcus equi subsp. zooep... 44 0.015
AF022655_1(AF022655|pid:none) Homo sapiens cep250 centrosome ass... 39 0.64
AY040821_1(AY040821|pid:none) Loligo pealei non-muscle myosin II... 39 0.64
AF049105_1(AF049105|pid:none) Homo sapiens centrosomal Nek2-asso... 39 0.64
(Q9BV73) RecName: Full=Centrosome-associated protein CEP250; Alt... 39 0.64
AB032535_1(AB032535|pid:none) Nicotiana tabacum A20 mRNA for hyp... 38 0.84
BA000001_1224(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 38 0.84
AB010697_10(AB010697|pid:none) Arabidopsis thaliana genomic DNA,... 37 1.4
CP000240_2583(CP000240|pid:none) Synechococcus sp. JA-2-3B'a(2-1... 37 1.9
CR940353_694(CR940353|pid:none) Theileria annulata strain Ankara... 37 2.4
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B... 37 2.4
AB280016_1(AB280016|pid:none) Molgula tectiformis Mt-MHC1-b mRNA... 37 2.4
CP000353_356(CP000353|pid:none) Ralstonia metallidurans CH34 meg... 37 2.4
AB434498_1(AB434498|pid:none) Physcomitrella patens subsp. paten... 36 3.2
FN357364_1(FN357364|pid:none) Schistosoma mansoni genome sequenc... 36 4.2
AB289560_1(AB289560|pid:none) Mizuhopecten yessoensis mRNA for n... 36 4.2
AF025467_5(AF025467|pid:none) Caenorhabditis elegans cosmid R148... 36 4.2
(Q8MSS1) RecName: Full=Protein lava lamp; &AE014298_609(AE01429... 36 4.2
EU708920_1(EU708920|pid:none) Canine rotavirus CU-1 NSP3 protein... 36 4.2
DQ838607_1(DQ838607|pid:none) Rotavirus A strain SA11-5S (SA11g4... 36 4.2
(A2T3N5) RecName: Full=Non-structural protein 3; Short=... 36 4.2
T32404(T32404)hypothetical protein R148.3 - Caenorhabditis elegans 36 4.2
AL591462_1(AL591462|pid:none) Zebrafish DNA sequence from clone ... 35 5.4
(Q8IIG7) RecName: Full=Uncharacterized protein PF11_0207; &AE01... 35 5.4
DQ119137_1(DQ119137|pid:none) Aplysia californica nonmuscle myos... 35 5.4
AY118638_1(AY118638|pid:none) Drosophila melanogaster SD02391 fu... 35 5.4
(P03536) RecName: Full=Non-structural protein 3; Short=... 35 5.4
CP000586_323(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 35 7.1
AJ312390_1(AJ312390|pid:none) Mus musculus mRNA for nonmuscle he... 35 7.1
AK148323_1(AK148323|pid:none) Mus musculus B16 F10Y cells cDNA, ... 35 7.1
DQ005106_1(DQ005106|pid:none) Human rotavirus A strain DRC88 NSP... 35 7.1
L03534_1(L03534|pid:none) Entamoeba histolytica myosin heavy cha... 35 7.1
M31013_1(M31013|pid:none) Human nonmuscle myosin heavy chain (NM... 35 7.1
EF672593_1(EF672593|pid:none) Human rotavirus A strain L26 non-s... 35 7.1
(P35579) RecName: Full=Myosin-9; AltName: Full=Myosin heavy chai... 35 7.1
AY787649_1(AY787649|pid:none) Human rotavirus A strain TB-Chen N... 35 7.1
CP000494_1922(CP000494|pid:none) Bradyrhizobium sp. BTAi1, compl... 35 7.1
AK147211_1(AK147211|pid:none) Mus musculus 15 days embryo liver ... 35 7.1
EF554090_1(EF554090|pid:none) Human rotavirus A strain B1711 NSP... 35 7.1
(A3DSK9) RecName: Full=Non-structural protein 3; Short=... 35 7.1
EF672579_1(EF672579|pid:none) Human rotavirus A strain DS-1 non-... 35 7.1
(Q62812) RecName: Full=Myosin-9; AltName: Full=Myosin heavy chai... 35 7.1
EF672558_1(EF672558|pid:none) Human rotavirus A strain 69M non-s... 35 7.1
AJ535206_1(AJ535206|pid:none) Anopheles gambiae mRNA for SMC4 pr... 35 7.1
AL049660_3(AL049660|pid:none) Arabidopsis thaliana DNA chromosom... 35 9.3
(P14105) RecName: Full=Myosin-9; AltName: Full=Myosin heavy chai... 35 9.3
AB088420_51(AB088420|pid:none) Pseudomonas resinovorans plasmid ... 35 9.3
AF068721_5(AF068721|pid:none) Caenorhabditis elegans cosmid ZK10... 35 9.3
BC166163_1(BC166163|pid:none) Xenopus tropicalis cDNA clone MGC:... 35 9.3
CP001111_3697(CP001111|pid:none) Stenotrophomonas maltophilia R5... 35 9.3
CP001034_1349(CP001034|pid:none) Natranaerobius thermophilus JW/... 35 9.3

>(P54696) RecName: Full=Myosin-H heavy chain; AltName: Full=Myosin-5a;
Length = 2359

Score = 53.1 bits (126), Expect = 3e-05
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 1/124 (0%)
Frame = +2

Query: 995 LLNEVLNGENYCTPSSGFKIKLSLSKMDDWXXXXXXXXXXXPARDHFMSIIETANLMVID 1174
+ NE+L ++ C S IK+++S+++ W D + E +++ID
Sbjct: 1582 IFNEILLRKDLCCLRSSIPIKMNISELEHWVKLHHGKEWSSSVCDKLRLLKEVVYILMID 1641

Query: 1175 KSIFTDSDSVISAFETLNILQIKKLLEIWKPD-NLSPDPIPKKIIASLNQQLDLNTHQRN 1351
K+ + + TL+I Q+K+LL ++ PD + DPIP +I+ SL N + N
Sbjct: 1642 KTQLQNDELRDEICPTLSIAQLKQLLTMYSPDVDSFEDPIPLEILTSLMDSPKYNPDE-N 1700

Query: 1352 LVVD 1363
+++D
Sbjct: 1701 ILLD 1704

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,781,572,859
Number of extensions: 31466296
Number of successful extensions: 80095
Number of sequences better than 10.0: 54
Number of HSP's gapped: 79805
Number of HSP's successfully gapped: 59
Length of query: 497
Length of database: 1,051,180,864
Length adjustment: 133
Effective length of query: 364
Effective length of database: 620,718,517
Effective search space: 225941540188
Effective search space used: 225941540188
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.82 gvh: 0.27 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.36 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: extracellular, including cell wall

>> prediction for Contig-U12567-1 is nuc

VS (DIR, S) 0
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0