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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02384-1
Contig ID Contig-U02384-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U02384-1 (Contig-U02384-1Q) /CSM_Contig/Contig-U02384-1Q.Seq.d
CACCACAACAACAACAGCATACAGCACCAGCACCACCAACTTCAAGACCA
GTTTCACAAATTCAAAATAGACCACCACCAGTTCCAACTGGTAATTCACC
ACAAAGACCTCCAACTCAACCACCAATGAATAGACCACCACCACCAGGTC
CAAACGGTGGAGGTCCACCACAACCACCAATTAGTAGACCACCACCACCA
AATCCAGGTGGTCCACCACAACCACCAATCAGTAGACCACCACCACCTAA
CCCAGGTACAGGTGGAGGTCCAACACAACCACCAATGAATAGACCACCAC
CACCAGGTCCAAATGGCGGTCCTATGAATAGACCACCACCACCAGGTCCA
AATGGCGGTCCACCACAACCAATGAATAGACCACCACCACCAGGTTCAAA
TGGAGGTCCACCTCAACCAATGAGTAGACCACCACCACCAGGTCAACCAA
ATATGCCACCACGTCCAGTTTCAACAATTAATGGTGTCGGAGGTGCTCCT
CCAACACAACCAAATGGTGGTCCACCACCAAAACCACAAAGACCTGGTCC
ACCACCTGTTCCTGGTGCTCCAAGACCAATGACAACTCCTCCAAATGGAA
TGACTCCGCCACCAAAACCACAAAGACCAGCAGCTCCACCAGCACTTCCA
CCAAGATAAGGTTATTTATTTAGAGATATATATATTCTTTTTCTTTGAAG
AGAAAAAGAGGAAATCCGTCAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 737
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4871186
End point 4870506
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 6
Link to clone list U02384
List of clone(s) 

est1=VFE548Z,1,692
est2=VFF118Z,1,696
est3=SLH464Z,52,723
est4=AFA664Z,80,709
est5=SLH464F,85,738
est6=SLF868Z,503,732
Translated Amino Acid sequence 
PQQQQHTAPAPPTSRPVSQIQNRPPPVPTGNSPQRPPTQPPMNRPPPPGPNGGGPPQPPI
SRPPPPNPGGPPQPPISRPPPPNPGTGGGPTQPPMNRPPPPGPNGGPMNRPPPPGPNGGP
PQPMNRPPPPGSNGGPPQPMSRPPPPGQPNMPPRPVSTINGVGGAPPTQPNGGPPPKPQR
PGPPPVPGAPRPMTTPPNGMTPPPKPQRPAAPPALPPR*gylfrdiyilfl*rekeeirq
kkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
hhnnnsiqhqhhqlqdqfhkfkidhhqfqlvihhkdlqlnhq*idhhhqvqtvevhhnhq
lvdhhhqiqvvhhnhqsvdhhhltqvqvevqhnhq*idhhhqvqmavl*idhhhqvqmav
hhnq*idhhhqvqmevhlnq*vdhhhqvnqichhvqfqqlmvsevllqhnqmvvhhqnhk
dlvhhlflvlqdq*qllqme*lrhqnhkdqqlhqhfhqdkviyleiyiffffeekkrksv
kkkkk


Frame B:
tttttayststtnfktsftnsk*tttssnw*fttktsnsttne*ttttrskrwrsttttn
**ttttksrwsttttnq*tttt*pryrwrsntttne*ttttrskwrsye*ttttrskwrs
tttne*ttttrfkwrststne*ttttrstkyattssfnn*wcrrcssnttkwwsttkttk
twsttcswcsktndnsskwndsatkttktssstststkirlfi*ryiysfslkrkrgnps
kkkkk


Frame C:
PQQQQHTAPAPPTSRPVSQIQNRPPPVPTGNSPQRPPTQPPMNRPPPPGPNGGGPPQPPI
SRPPPPNPGGPPQPPISRPPPPNPGTGGGPTQPPMNRPPPPGPNGGPMNRPPPPGPNGGP
PQPMNRPPPPGSNGGPPQPMSRPPPPGQPNMPPRPVSTINGVGGAPPTQPNGGPPPKPQR
PGPPPVPGAPRPMTTPPNGMTPPPKPQRPAAPPALPPR*gylfrdiyilfl*rekeeirq
kkkkk
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02384-1 (Contig-U02384-1Q)
/CSM_Contig/Contig-U02384-1Q.Seq.d
         (737 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02384-1 (Contig-U02384-1Q) /CSM_Contig/Conti...   924  0.0
Contig-U13191-1 (Contig-U13191-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U06150-1 (Contig-U06150-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U04643-1 (Contig-U04643-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U14678-1 (Contig-U14678-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U14516-1 (Contig-U14516-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U11814-1 (Contig-U11814-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U11733-1 (Contig-U11733-1Q) /CSM_Contig/Conti...    36  0.052
Contig-U11431-1 (Contig-U11431-1Q) /CSM_Contig/Conti...    36  0.052

>Contig-U02384-1 (Contig-U02384-1Q) /CSM_Contig/Contig-U02384-1Q.Seq.d
          Length = 737

 Score =  924 bits (466), Expect = 0.0
 Identities = 466/466 (100%)
 Strand = Plus / Plus

                                                                       
Query: 255 ggtacaggtggaggtccaacacaaccaccaatgaatagaccaccaccaccaggtccaaat 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ggtacaggtggaggtccaacacaaccaccaatgaatagaccaccaccaccaggtccaaat 314

                                                                       
Query: 315 ggcggtcctatgaatagaccaccaccaccaggtccaaatggcggtccaccacaaccaatg 374
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggcggtcctatgaatagaccaccaccaccaggtccaaatggcggtccaccacaaccaatg 374

                                                                       
Query: 375 aatagaccaccaccaccaggttcaaatggaggtccacctcaaccaatgagtagaccacca 434
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aatagaccaccaccaccaggttcaaatggaggtccacctcaaccaatgagtagaccacca 434

                                                                       
Query: 435 ccaccaggtcaaccaaatatgccaccacgtccagtttcaacaattaatggtgtcggaggt 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccaccaggtcaaccaaatatgccaccacgtccagtttcaacaattaatggtgtcggaggt 494

                                                                       
Query: 495 gctcctccaacacaaccaaatggtggtccaccaccaaaaccacaaagacctggtccacca 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gctcctccaacacaaccaaatggtggtccaccaccaaaaccacaaagacctggtccacca 554

                                                                       
Query: 555 cctgttcctggtgctccaagaccaatgacaactcctccaaatggaatgactccgccacca 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cctgttcctggtgctccaagaccaatgacaactcctccaaatggaatgactccgccacca 614

                                                                       
Query: 615 aaaccacaaagaccagcagctccaccagcacttccaccaagataaggttatttatttaga 674
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaaccacaaagaccagcagctccaccagcacttccaccaagataaggttatttatttaga 674

                                                         
Query: 675 gatatatatattctttttctttgaagagaaaaagaggaaatccgtc 720
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 gatatatatattctttttctttgaagagaaaaagaggaaatccgtc 720


 Score =  317 bits (160), Expect = 9e-87
 Identities = 160/160 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caccacaacaacaacagcatacagcaccagcaccaccaacttcaagaccagtttcacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caccacaacaacaacagcatacagcaccagcaccaccaacttcaagaccagtttcacaaa 60

                                                                       
Query: 61  ttcaaaatagaccaccaccagttccaactggtaattcaccacaaagacctccaactcaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ttcaaaatagaccaccaccagttccaactggtaattcaccacaaagacctccaactcaac 120

                                                   
Query: 121 caccaatgaatagaccaccaccaccaggtccaaacggtgg 160
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caccaatgaatagaccaccaccaccaggtccaaacggtgg 160


 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                        
Query: 269 tccaacacaaccaccaatgaatagaccaccaccaccaggtccaaa 313
           |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tccaactcaaccaccaatgaatagaccaccaccaccaggtccaaa 154


 Score = 81.8 bits (41), Expect = 1e-15
 Identities = 44/45 (97%)
 Strand = Plus / Plus

                                                        
Query: 110 tccaactcaaccaccaatgaatagaccaccaccaccaggtccaaa 154
           |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tccaacacaaccaccaatgaatagaccaccaccaccaggtccaaa 313


 Score = 77.8 bits (39), Expect = 2e-14
 Identities = 70/79 (88%), Gaps = 6/79 (7%)
 Strand = Plus / Plus

                                                                       
Query: 368 accaatgaatagaccaccaccaccaggttcaaa---tggaggtccacctca---accaat 421
           |||||||||||||||||||||||||||| ||||   |||||||||||| ||   ||||||
Sbjct: 122 accaatgaatagaccaccaccaccaggtccaaacggtggaggtccaccacaaccaccaat 181

                              
Query: 422 gagtagaccaccaccacca 440
            ||||||||||||||||||
Sbjct: 182 tagtagaccaccaccacca 200


 Score = 69.9 bits (35), Expect = 4e-12
 Identities = 66/75 (88%), Gaps = 6/75 (8%)
 Strand = Plus / Plus

                                                                       
Query: 324 atgaatagaccaccaccaccaggtccaaa---tggcggtccaccaca---accaatgaat 377
           |||||||||||||||||||||||||||||   ||| |||||||||||   |||||| | |
Sbjct: 126 atgaatagaccaccaccaccaggtccaaacggtggaggtccaccacaaccaccaattagt 185

                          
Query: 378 agaccaccaccacca 392
           |||||||||||||||
Sbjct: 186 agaccaccaccacca 200


 Score = 65.9 bits (33), Expect = 6e-11
 Identities = 42/45 (93%)
 Strand = Plus / Plus

                                                        
Query: 261 ggtggaggtccaacacaaccaccaatgaatagaccaccaccacca 305
           |||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct: 156 ggtggaggtccaccacaaccaccaattagtagaccaccaccacca 200


 Score = 58.0 bits (29), Expect = 1e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 126 atgaatagaccaccaccaccaggtccaaa 154
           |||||||||||||||||||||||||||||
Sbjct: 324 atgaatagaccaccaccaccaggtccaaa 352


 Score = 58.0 bits (29), Expect = 1e-08
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 122 accaatgaatagaccaccaccaccaggtccaaa 154
           |||||||||||||||||||||||||||| ||||
Sbjct: 368 accaatgaatagaccaccaccaccaggttcaaa 400


 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 267 ggtccaacacaaccaccaatgaatagaccaccaccacc 304
           |||||| ||||||||||||| | |||||||||||||||
Sbjct: 210 ggtccaccacaaccaccaatcagtagaccaccaccacc 247


 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 416 accaatgagtagaccaccaccaccaggtc 444
           |||||||| ||||||||||||||||||||
Sbjct: 122 accaatgaatagaccaccaccaccaggtc 150


 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 122 accaatgaatagaccaccaccaccaggtc 150
           |||||||| ||||||||||||||||||||
Sbjct: 416 accaatgagtagaccaccaccaccaggtc 444


 Score = 44.1 bits (22), Expect = 2e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 117 caaccaccaatgaatagaccaccaccacca 146
           ||||||||||| | ||||||||||||||||
Sbjct: 171 caaccaccaattagtagaccaccaccacca 200


 Score = 42.1 bits (21), Expect = 8e-04
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 117 caaccaccaatgaatagaccaccaccacc 145
           ||||||||||| | |||||||||||||||
Sbjct: 219 caaccaccaatcagtagaccaccaccacc 247


 Score = 38.2 bits (19), Expect = 0.013
 Identities = 102/128 (79%), Gaps = 15/128 (11%)
 Strand = Plus / Plus

                                                                       
Query: 329 tagaccaccaccaccaggtccaaatggcggtccaccacaacca---atgaatagaccacc 385
           ||||||||||||||||  ||||   || |||||||||||||||   || | |||||||||
Sbjct: 185 tagaccaccaccaccaaatcca---ggtggtccaccacaaccaccaatcagtagaccacc 241

                                                                       
Query: 386 acca------ccaggttcaaatggaggtccacctca---accaatgagtagaccaccacc 436
           ||||      |||||| ||  |||||||||| | ||   |||||||| ||||||||||||
Sbjct: 242 accacctaacccaggtacaggtggaggtccaacacaaccaccaatgaatagaccaccacc 301

                   
Query: 437 accaggtc 444
           ||||||||
Sbjct: 302 accaggtc 309


 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 327 aatagaccaccacca 341
           |||||||||||||||
Sbjct: 66  aatagaccaccacca 80


 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 66  aatagaccaccacca 80
           |||||||||||||||
Sbjct: 375 aatagaccaccacca 389


 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 288 aatagaccaccacca 302
           |||||||||||||||
Sbjct: 66  aatagaccaccacca 80


 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 66  aatagaccaccacca 80
           |||||||||||||||
Sbjct: 327 aatagaccaccacca 341


 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 375 aatagaccaccacca 389
           |||||||||||||||
Sbjct: 66  aatagaccaccacca 80


 Score = 30.2 bits (15), Expect = 3.2
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 66  aatagaccaccacca 80
           |||||||||||||||
Sbjct: 288 aatagaccaccacca 302


>Contig-U13191-1 (Contig-U13191-1Q) /CSM_Contig/Contig-U13191-1Q.Seq.d
          Length = 590

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 50 agtttcacaaattcaaaat 68
          |||||||||||||||||||
Sbjct: 25 agtttcacaaattcaaaat 43


>Contig-U06150-1 (Contig-U06150-1Q) /CSM_Contig/Contig-U06150-1Q.Seq.d
          Length = 511

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 2   accacaacaacaacagcat 20
           |||||||||||||||||||
Sbjct: 274 accacaacaacaacagcat 292


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,246
Number of Sequences: 6905
Number of extensions: 22246
Number of successful extensions: 4074
Number of sequences better than 10.0: 321
length of query: 737
length of database: 5,674,871
effective HSP length: 16
effective length of query: 721
effective length of database: 5,564,391
effective search space: 4011925911
effective search space used: 4011925911
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.17
Homology vs DNA 
Query= Contig-U02384-1 (Contig-U02384-1Q) /CSM_Contig/Contig-U02384-1Q.Seq.d
         (737 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ428179) Dictyostelium discoideum cDNA clone:ddv11c05, 3' ...   507   0.0    3
(BJ428015) Dictyostelium discoideum cDNA clone:ddv10o11, 3' ...   500   0.0    3
(AU062070) Dictyostelium discoideum slug cDNA, clone SLH464.      555   0.0    3
(AU040021) Dictyostelium discoideum slug cDNA, clone SLH464.      519   0.0    3
(BJ340559) Dictyostelium discoideum cDNA clone:dda2o16, 3' e...   505   0.0    3
(BJ346576) Dictyostelium discoideum cDNA clone:dda24j08, 3' ...   426   e-153  3
(AU053173) Dictyostelium discoideum slug cDNA, clone SLF868.      432   e-117  1
(AU284522) Dictyostelium discoideum gamete cDNA clone:FC-BB0...   220   6e-53  1
(CN806865) Hy_ad_09G05_M13R Hydractinia sp. from Ofer Mokady...    38   8e-05  4
(EY102515) CAZI25803.rev CAZI Artemisia annua normalized lea...    32   0.005  4
(EY102516) CAZI25803.fwd CAZI Artemisia annua normalized lea...    32   0.006  4
(BZ147598) CH230-504I21.TJ CHORI-230 Segment 2 Rattus norveg...    34   0.064  3
(EJ191197) 1092344199674 Global-Ocean-Sampling_GS-27-01-01-1...    50   0.12   1
(CP001185) Thermosipho africanus TCF52B, complete genome.          50   0.12   1
(AL250244) Tetraodon nigroviridis genome survey sequence T7 ...    34   0.24   3
(FC811833) Sr_pASP6_08n05_SP6 S. ratti mixed stage pAMP Stro...    40   0.26   2
(FC810227) Sr_pASP6_03k03_SP6 S. ratti mixed stage pAMP Stro...    40   0.30   2
(EB591225) AGENCOURT_51895199 D. ananassae EST Drosophila an...    36   0.35   2
(EB583439) AGENCOURT_51894827 D. ananassae EST Drosophila an...    36   0.35   2
(EB591488) AGENCOURT_51786614 D. ananassae EST Drosophila an...    36   0.35   2
(EG697930) RCSA664TP Castor bean cDNA library from seeds (12...    36   0.40   2
(AF380992) Musca domestica microsatellite MdCAG34 sequence.        40   0.43   2
(CG328877) OG2CF63TH ZM_0.7_1.5_KB Zea mays genomic clone ZM...    34   0.47   3
(CG755531) P051-1-E05.za Ppa EcoRI BAC Library Pristionchus ...    34   0.47   3
(FE243712) CAPG7794.fwd CAPG Naegleria gruberi amoeba stage ...    34   0.48   3
(AU039781) Dictyostelium discoideum slug cDNA, clone SLG408.       32   0.61   3
(CO822111) LM_GB5_002437 Locusta migratoria gregarious phase...    36   0.77   2
(FD462144) LARVQ45TR Haematobia irritans 1st Instar Larvae H...    34   0.78   3
(CO822110) LM_GB5_002436 Locusta migratoria gregarious phase...    36   0.79   2
(CO822109) LM_GB5_002435 Locusta migratoria gregarious phase...    36   0.80   2
(ER444573) 1092963824981 Global-Ocean-Sampling_GS-35-01-01-1...    44   0.90   2
(CA917478) EST641625 GPOD Medicago truncatula cDNA clone GPO...    38   0.92   2
(CX520085) s13dNF54E12VI099_444222 Virus-Infected Leaves Med...    38   0.93   2
(AW981212) EST392302 DSIL Medicago truncatula cDNA clone pDS...    38   0.98   2
(AC021472) Homo sapiens clone RP11-677M24, WORKING DRAFT SEQ...    40   1.1    4
(BG589099) EST490908 MHRP- Medicago truncatula cDNA clone pM...    38   1.1    2
(FD801189) CBGU765.rev CBGU Volvox carteri f. nagariensis in...    32   1.2    3
(CR320057) mte1-46C19FM1 BAC end, cultivar Jemalong A17 of M...    38   1.3    2
(EF559362) Drosophila mesophragmatica hunchback protein (hb)...    34   1.3    2
(AL217078) Tetraodon nigroviridis genome survey sequence T7 ...    40   1.5    2
(DE227734) Trifolium pratense DNA, clone:RCG20449.                 30   1.9    3
(EU090187) Trachelium caeruleum chloroplast, complete genome.      46   1.9    1
(CT009566) Pig DNA sequence from clone CH242-258I7 on chromo...    46   1.9    1
(CU915814) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.9    1
(CU862003) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(CU469453) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(CT954267) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.9    1
(AC219494) Bos taurus clone CH240-332I6, WORKING DRAFT SEQUE...    46   1.9    1
(CU840864) A BAC library has been constructed from PN40024 g...    46   1.9    1
(AF224467) Haemophilus ducreyi tRNA nucleotidyltransferase a...    46   1.9    1
(AE017143) Haemophilus ducreyi strain 35000HP complete genome.     46   1.9    1
(FG294264) 1108770706308 New World Screwworm Larvae 9387 EST...    36   2.0    3
(FG299783) 1108793347126 New World Screwworm Larvae 9387 EST...    36   2.1    3
(FD082708) CBFH23273.b1 CBFH: Normalized blue catfish cDNA l...    40   2.4    2
(BQ462202) HD02A19r HD Hordeum vulgare cDNA clone HD02A19 5-...    36   2.4    2
(GC788513) Sequence 103758 from patent US 6812339.                 32   2.5    3
(FD464499) LARW607TF Haematobia irritans 1st Instar Larvae H...    34   2.6    3
(BP959544) Euphorbia tirucalli mRNA, clone: ETC005C05, 5' end.     38   2.7    2
(FD464500) LARW607TR Haematobia irritans 1st Instar Larvae H...    34   2.8    3
(BP960873) Euphorbia tirucalli mRNA, clone: ETC083C09, 5' end.     38   3.0    2
(BZ144689) CH230-319E12.TV CHORI-230 Segment 2 Rattus norveg...    40   3.0    2
(BM306964) EtESTee46g09.y1 Eimeria tenella M5-6 cDNA Neg Sel...    34   3.0    3
(CA006570) HU05B03r HU Hordeum vulgare subsp. vulgare cDNA c...    36   3.0    2
(CP000497) Pichia stipitis CBS 6054 chromosome 3, complete s...    32   3.1    2
(CU463297) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   3.2    2
(BP960872) Euphorbia tirucalli mRNA, clone: ETC015F01, 5' end.     38   3.2    2
(BP959543) Euphorbia tirucalli mRNA, clone: ETC046H11, 5' end.     38   3.4    2
(EY113441) CAZI8349.fwd CAZI Artemisia annua normalized leaf...    32   3.4    3
(CO258682) VRK386 Vitis riparia bud - VRK Vitis riparia cDNA...    34   3.5    2
(AA696342) GM07509.5prime GM Drosophila melanogaster ovary B...    36   3.6    2
(AC140456) Mus musculus BAC clone RP23-49D19 from 18, comple...    44   3.7    4
(BV042883) S212P6598FD9.T0 CZECHII/Ei Mus musculus STS genom...    40   3.7    2
(AP009972) Lotus japonicus genomic DNA, chromosome 3, clone:...    34   3.7    2
(BG544613) E2521 Chinese cabbage etiolated seedling library ...    30   3.8    3
(AV913214) Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDN...    36   3.8    2
(AC203005) Zea mays chromosome 9 clone CH201-155N16; ZMMBBc0...    36   3.8    5
(GH728078) G608.118I21F010910 G608 Triticum aestivum cDNA cl...    36   4.0    2
(FD580103) RS3FK72TF RS3(RT) Raphanus sativus cDNA 5', mRNA ...    36   4.2    2
(CN182108) UCRCS04_0001P11_f Ruby Orange Developing Flower c...    32   4.5    3
(BF581439) 602100841F1 NCI_CGAP_Co24 Mus musculus cDNA clone...    42   4.7    2
(BC154022) Danio rerio hypothetical protein LOC100003661, mR...    32   4.8    2
(EL646777) AGENCOURT_97514499 NCI_CGAP_ZKid1 Danio rerio cDN...    32   4.8    2
(CK870588) AGENCOURT_19413599 NIH_ZGC_16 Danio rerio cDNA cl...    32   4.8    2
(DN833693) AGENCOURT_49838415 NIH_ZGC_16 Danio rerio cDNA cl...    32   4.8    2
(CN323656) AGENCOURT_21835361 NIH_ZGC_10 Danio rerio cDNA cl...    32   4.9    2
(EE696081) AGENCOURT_90116309 NIH_ZGC_28 Danio rerio cDNA cl...    32   4.9    2
(CO805761) AGENCOURT_30339207 NIH_ZGC_8 Danio rerio cDNA clo...    32   4.9    2
(CN168553) AGENCOURT_21025476 NIH_ZGC_8 Danio rerio cDNA clo...    32   4.9    2
(DN833977) AGENCOURT_49838413 NIH_ZGC_16 Danio rerio cDNA cl...    32   4.9    2
(EY303110) CAWX16533.fwd CAWX Helobdella robusta Primary Ear...    32   4.9    2
(CN321302) AGENCOURT_21830103 NIH_ZGC_10 Danio rerio cDNA cl...    32   4.9    2
(FE844078) CAFH1710.fwd CAFH Pichia stipitis aerobic dextros...    32   4.9    2
(EH996241) AGENCOURT_97638405 NIH_ZGC_7 Danio rerio cDNA clo...    32   4.9    2
(CT627623) Danio rerio EST, clone ZF_mu_72f12 3'.                  32   4.9    2
(DY548277) AGENCOURT_69873751 NIH_ZGC_25 Danio rerio cDNA cl...    32   4.9    2
(CK017729) AGENCOURT_16545418 NIH_ZGC_10 Danio rerio cDNA cl...    32   4.9    2
(CN331431) AGENCOURT_21829888 NIH_ZGC_10 Danio rerio cDNA cl...    32   4.9    2
(DN832927) AGENCOURT_49834332 NIH_ZGC_16 Danio rerio cDNA cl...    32   4.9    2
(CK865896) AGENCOURT_19425229 NIH_ZGC_16 Danio rerio cDNA cl...    32   4.9    2
(EX835517) CBNB5903.fwd CBNB Phycomyces blakesleeanus NRRL15...    32   4.9    2
(DN771584) AGENCOURT_48358932 NIH_ZGC_16 Danio rerio cDNA cl...    32   4.9    2
(DT072529) AGENCOURT_56117222 NIH_ZGC_7 Danio rerio cDNA clo...    32   4.9    2
(EB617965) AGENCOURT_56980805 D. grimshawi EST Drosophila gr...    32   4.9    2
(DT066046) AGENCOURT_56110846 NIH_ZGC_7 Danio rerio cDNA clo...    32   4.9    2
(EX820653) CBNA7184.rev CBNA Phycomyces blakesleeanus NRRL15...    32   4.9    2
(EB599168) AGENCOURT_56951981 D. grimshawi EST Drosophila gr...    32   4.9    2
(CK026304) AGENCOURT_16623840 NIH_ZGC_7 Danio rerio cDNA clo...    32   4.9    2
(CB939244) IpCGJx13_44_G01_23 IpCGJx13 Ictalurus punctatus c...    32   4.9    2
(EX849113) CBNC7748.rev CBNC Phycomyces blakesleeanus NRRL15...    32   4.9    2
(CZ291175) cp74b11.r Candida parapsilosis Random Genomic Lib...    36   4.9    3
(CD283951) G39168.39 NCI_CGAP_ZKid1 Danio rerio cDNA clone I...    32   5.0    2
(AK282457) Gryllus bimaculatus mRNA, GBcontig29318.                32   5.0    3
(BG727884) fo79a09.y1 zebrafish gridded kidney Danio rerio c...    32   5.0    2
(DH483014) Monosiga ovata DNA, fosmid clone: MOF-037M15, gen...    30   5.5    3
(EJ137457) 1092343613438 Global-Ocean-Sampling_GS-27-01-01-1...    32   5.6    3
(AC148802) Otolemur garnettii clone CH256-52G22, WORKING DRA...    34   5.7    4
(EJ485334) 1095403496116 Global-Ocean-Sampling_GS-28-01-01-1...    32   5.9    3
(EB333013) CNSN01-F-139111-501 Normalized CNS library (juven...    32   6.6    3
(CU651662) Zebrafish DNA sequence from clone CH1073-131E15 i...    44   7.5    1
(CT827859) Zebrafish DNA sequence from clone CH73-16A12 in l...    44   7.5    1
(AC118472) Mus musculus chromosome 19, clone RP23-187N14, co...    44   7.5    1
(AE017346) Cryptococcus neoformans var. neoformans JEC21 chr...    44   7.5    1
(AC188161) Canis Familiaris chromosome 26, clone XX-320A4, c...    44   7.5    1
(AL354723) Human DNA sequence from clone RP11-526D20 on chro...    44   7.5    1
(AC158853) Bos taurus clone CH240-19D3, WORKING DRAFT SEQUENCE.    44   7.5    1
(AC132977) Rattus norvegicus clone CH230-517K21, WORKING DRA...    44   7.5    1
(AC119017) Rattus norvegicus clone CH230-419F24, *** SEQUENC...    44   7.5    1
(AC111735) Rattus norvegicus clone CH230-187L15, WORKING DRA...    44   7.5    1
(AC107273) Rattus norvegicus clone CH230-239I10, *** SEQUENC...    44   7.5    1
(AC096437) Rattus norvegicus clone CH230-145O18, *** SEQUENC...    44   7.5    1
(AC094890) Rattus norvegicus clone CH230-6A2, *** SEQUENCING...    44   7.5    1
(FP016237) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.5    1
(FP016212) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   7.5    1
(CU915547) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.5    1
(CU914799) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.5    1
(CU550727) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.5    1
(AP010046) Lotus japonicus genomic DNA, clone: LjT30N18, TM0...    44   7.5    1
(AC222777) Bos taurus clone CH240-439A19, WORKING DRAFT SEQU...    44   7.5    1
(AC019222) Homo sapiens chromosome 9 clone RP11-535E24, WORK...    44   7.5    1
(AK037909) Mus musculus 16 days neonate thymus cDNA, RIKEN f...    44   7.5    1
(BH325808) CH230-174D21.TJ CHORI-230 Segment 1 Rattus norveg...    44   7.5    1
(BH079943) RPCI-24-244J9.TV RPCI-24 Mus musculus genomic clo...    44   7.5    1
(FI356707) CH321-55F14.y CHORI-321 Drosophila melanogaster g...    44   7.5    1
(ET934669) CHO_OF430xg09r1.ab1 CHO_OF Nicotiana tabacum geno...    44   7.5    1
(ET934590) CHO_OF430xg09f1.ab1 CHO_OF Nicotiana tabacum geno...    44   7.5    1
(CC076958) CSU-K33r.26E14.SP6 CSU-K33r Aedes aegypti genomic...    44   7.5    1
(EB946384) 13541891 ZF34 Danio rerio cDNA clone 3416582, mRN...    44   7.5    1
(DW602911) CGX162-G12.y1d-s SHGC-CGX2 Gasterosteus aculeatus...    44   7.5    1
(DT988925) CLJ240-E07.x1d-t SHGC-CLJ Gasterosteus aculeatus ...    44   7.5    1
(DT988755) CLJ239-E07.y1d-s SHGC-CLJ Gasterosteus aculeatus ...    44   7.5    1
(DR105330) JHU085F07L634 Canine cardiovascular system biased...    44   7.5    1
(DN701212) CLJ34-C12.y1d-s SHGC-CLJ Gasterosteus aculeatus c...    44   7.5    1
(DN675709) CFW88-A10.y1d-s SHGC-CFW Gasterosteus aculeatus c...    44   7.5    1
(DN655312) CEC16-C09.y1d-s SHGC-CEC Gasterosteus aculeatus c...    44   7.5    1
(CK705494) ZF101-P00010-DEPE-R_E11 GISZF001_ra Danio rerio c...    44   7.5    1
(BQ628634) sao68e06.y1 Gm-c1073 Glycine max cDNA clone SOYBE...    44   7.5    1
(BB161762) Mus musculus 16 days neonate thymus cDNA, RIKEN f...    44   7.5    1
(FD456275) EGGB674TR Haematobia irritans eggs Haematobia irr...    44   7.5    1
(ER431449) 1092963779831 Global-Ocean-Sampling_GS-35-01-01-1...    32   7.8    3
(DW975338) MSAM294823_2545_1288 LCM-dissected maize shoot ap...    34   7.8    2
(DH473141) Monosiga ovata DNA, fosmid clone: MOF-020H18, gen...    30   8.6    3
(AE014134) Drosophila melanogaster chromosome 2L, complete s...    30   8.8    2
(AE013599) Drosophila melanogaster chromosome 2R, complete s...    30   8.9    2
(DH487008) Monosiga ovata DNA, fosmid clone: MOF-044H21, gen...    30   9.1    3
(CT669134) Danio rerio EST, clone ZF_mu_12d09 3'.                  40   9.4    2

>(BJ428179) Dictyostelium discoideum cDNA clone:ddv11c05, 3' end,
           single read.
          Length = 696

 Score =  507 bits (256), Expect(3) = 0.0
 Identities = 256/256 (100%)
 Strand = Plus / Minus


Query: 441 ggtcaaccaaatatgccaccacgtccagtttcaacaattaatggtgtcggaggtgctcct 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ggtcaaccaaatatgccaccacgtccagtttcaacaattaatggtgtcggaggtgctcct 197


Query: 501 ccaacacaaccaaatggtggtccaccaccaaaaccacaaagacctggtccaccacctgtt 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ccaacacaaccaaatggtggtccaccaccaaaaccacaaagacctggtccaccacctgtt 137


Query: 561 cctggtgctccaagaccaatgacaactcctccaaatggaatgactccgccaccaaaacca 620
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 cctggtgctccaagaccaatgacaactcctccaaatggaatgactccgccaccaaaacca 77


Query: 621 caaagaccagcagctccaccagcacttccaccaagataaggttatttatttagagatata 680
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  caaagaccagcagctccaccagcacttccaccaagataaggttatttatttagagatata 17


Query: 681 tatattctttttcttt 696
           ||||||||||||||||
Sbjct: 16  tatattctttttcttt 1

 Score =  230 bits (116), Expect(3) = 0.0
 Identities = 116/116 (100%)
 Strand = Plus / Minus


Query: 1   caccacaacaacaacagcatacagcaccagcaccaccaacttcaagaccagtttcacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 caccacaacaacaacagcatacagcaccagcaccaccaacttcaagaccagtttcacaaa 637


Query: 61  ttcaaaatagaccaccaccagttccaactggtaattcaccacaaagacctccaact 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 ttcaaaatagaccaccaccagttccaactggtaattcaccacaaagacctccaact 581

 Score =  153 bits (77), Expect(3) = 0.0
 Identities = 77/77 (100%)
 Strand = Plus / Minus


Query: 255 ggtacaggtggaggtccaacacaaccaccaatgaatagaccaccaccaccaggtccaaat 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggtacaggtggaggtccaacacaaccaccaatgaatagaccaccaccaccaggtccaaat 383


Query: 315 ggcggtcctatgaatag 331
           |||||||||||||||||
Sbjct: 382 ggcggtcctatgaatag 366

 Score = 81.8 bits (41), Expect(3) = 4e-17
 Identities = 44/45 (97%)
 Strand = Plus / Minus


Query: 269 tccaacacaaccaccaatgaatagaccaccaccaccaggtccaaa 313
           |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tccaactcaaccaccaatgaatagaccaccaccaccaggtccaaa 543

 Score = 40.1 bits (20), Expect(3) = 4e-17
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 525 ccaccaaaaccacaaagacc 544
           ||||||||||||||||||||
Sbjct: 88  ccaccaaaaccacaaagacc 69

 Score = 26.3 bits (13), Expect(3) = 4e-17
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 500 tccaacacaacca 512
           |||||||||||||
Sbjct: 428 tccaacacaacca 416

 Score = 65.9 bits (33), Expect(4) = 2e-15
 Identities = 42/45 (93%)
 Strand = Plus / Minus


Query: 261 ggtggaggtccaacacaaccaccaatgaatagaccaccaccacca 305
           |||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct: 541 ggtggaggtccaccacaaccaccaattagtagaccaccaccacca 497

 Score = 40.1 bits (20), Expect(4) = 2e-15
 Identities = 20/20 (100%)
 Strand = Plus / Minus


Query: 609 ccaccaaaaccacaaagacc 628
           ||||||||||||||||||||
Sbjct: 172 ccaccaaaaccacaaagacc 153

 Score = 30.2 bits (15), Expect(4) = 2e-15
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 66  aatagaccaccacca 80
           |||||||||||||||
Sbjct: 568 aatagaccaccacca 554

 Score = 26.3 bits (13), Expect(4) = 2e-15
 Identities = 13/13 (100%)
 Strand = Plus / Minus


Query: 516 ggtggtccaccac 528
           |||||||||||||
Sbjct: 490 ggtggtccaccac 478

 Score = 75.8 bits (38), Expect(2) = 4e-11
 Identities = 38/38 (100%)
 Strand = Plus / Minus


Query: 285 atgaatagaccaccaccaccaggtccaaatggcggtcc 322
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atgaatagaccaccaccaccaggtccaaatggcggtcc 336

 Score = 30.2 bits (15), Expect(2) = 4e-11
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 66  aatagaccaccacca 80
           |||||||||||||||
Sbjct: 409 aatagaccaccacca 395

 Score = 67.9 bits (34), Expect(2) = 8e-09
 Identities = 40/42 (95%)
 Strand = Plus / Minus


Query: 281 accaatgaatagaccaccaccaccaggtccaaatggcggtcc 322
           |||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 329 accaatgaatagaccaccaccaccaggttcaaatggaggtcc 288

 Score = 30.2 bits (15), Expect(2) = 8e-09
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 66  aatagaccaccacca 80
           |||||||||||||||
Sbjct: 370 aatagaccaccacca 356

 Score = 50.1 bits (25), Expect(2) = 0.001
 Identities = 28/29 (96%)
 Strand = Plus / Minus


Query: 281 accaatgaatagaccaccaccaccaggtc 309
           |||||||| ||||||||||||||||||||
Sbjct: 281 accaatgagtagaccaccaccaccaggtc 253

 Score = 30.2 bits (15), Expect(2) = 0.001
 Identities = 15/15 (100%)
 Strand = Plus / Minus


Query: 66  aatagaccaccacca 80
           |||||||||||||||
Sbjct: 322 aatagaccaccacca 308

 Score = 52.0 bits (26), Expect(2) = 0.005
 Identities = 35/38 (92%)
 Strand = Plus / Minus


Query: 267 ggtccaacacaaccaccaatgaatagaccaccaccacc 304
           |||||| ||||||||||||| | |||||||||||||||
Sbjct: 487 ggtccaccacaaccaccaatcagtagaccaccaccacc 450

 Score = 26.3 bits (13), Expect(2) = 0.005
 Identities = 16/17 (94%)
 Strand = Plus / Minus


Query: 71  accaccaccagttccaa 87
           ||||||||||| |||||
Sbjct: 560 accaccaccaggtccaa 544

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 670,587,596
Number of extensions: 52240155
Number of successful extensions: 5079337
Number of sequences better than 10.0: 170
Length of query: 737
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 713
Effective length of database: 99,340,224,878
Effective search space: 70829580338014
Effective search space used: 70829580338014
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U02384-1 (Contig-U02384-1Q) /CSM_Contig/Contig-U02384-1Q.Seq.d
         (737 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54HX6) RecName: Full=Myb-like protein I;                             38   0.29
U70646_1(U70646|pid:none) Mus musculus domesticus sex determinin...    37   0.49
AF068053_1(AF068053|pid:none) Mus musculus domesticus strain B6-...    37   0.49
AF068054_1(AF068054|pid:none) Mus musculus domesticus strain B6-...    37   0.49
BX842634_16(BX842634|pid:none) Neurospora crassa DNA linkage gro...    37   0.64
AJ783397_1(AJ783397|pid:none) Gerbera hybrida partial gtt5 gene.       37   0.84
AE014188_476(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.84
L04161_1(L04161|pid:none) Plasmodium falciparum clone Pfg377 Pfs...    37   0.84
AY830454_1(AY830454|pid:none) Petromyzon marinus SoxF (SoxF) mRN...    37   0.84
AB210272_1(AB210272|pid:none) Oncorhynchus keta PPARG mRNA for p...    37   0.84
CP000497_273(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    37   0.84
(P36417) RecName: Full=G-box-binding factor;          Short=GBF;       37   0.84
(P04929) Histidine-rich glycoprotein precursor.  &KGZQHL(A22692)...    37   0.84
AE014297_1244(AE014297|pid:none) Drosophila melanogaster chromos...    36   1.1
AY056469_1(AY056469|pid:none) Petromyzon marinus homeobox protei...    36   1.4
U70651_1(U70651|pid:none) Mus musculus musculus sex determining ...    35   1.9
U70652_1(U70652|pid:none) Mus musculus musculus sex determining ...    35   1.9
AF362373_1(AF362373|pid:none) Dictyostelium discoideum histidine...    35   3.2
AB210271_3(AB210271|pid:none) Oncorhynchus keta SYN2, PPARG, RAF...    35   3.2
BC157989_1(BC157989|pid:none) Mus musculus mastermind-like domai...    34   4.2
AL929357_69(AL929357|pid:none) Plasmodium falciparum strain 3D7,...    34   4.2
AL844508_227(AL844508|pid:none) Plasmodium falciparum 3D7 chromo...    34   4.2
AE014296_3119(AE014296|pid:none) Drosophila melanogaster chromos...    34   5.4
AY754441_1(AY754441|pid:none) Drosophila miranda strain MA32 bic...    34   5.4
AE014298_1091(AE014298|pid:none) Drosophila melanogaster chromos...    34   5.4
AF450946_1(AF450946|pid:none) Drosophila pseudoobscura bogotana ...    33   7.1
AF450950_1(AF450950|pid:none) Drosophila persimilis strain Mathe...    33   7.1
AY754444_1(AY754444|pid:none) Drosophila miranda strain MSH22 bi...    33   7.1
S12570(S12570) homeotic protein bicoid - fruit fly (Drosophila p...    33   7.1
AF450959_1(AF450959|pid:none) Drosophila persimilis strain MSH1 ...    33   7.1
AF450961_1(AF450961|pid:none) Drosophila persimilis strain MSH7 ...    33   7.1
AC117075_53(AC117075|pid:none) Dictyostelium discoideum chromoso...    33   7.1
AF450915_1(AF450915|pid:none) Drosophila pseudoobscura strain Ab...    33   7.1
AY754435_1(AY754435|pid:none) Drosophila miranda strain 0101.3 b...    33   7.1
AF450957_1(AF450957|pid:none) Drosophila persimilis strain MSH25...    33   7.1
(P10180) RecName: Full=Homeobox protein cut;  &AE014298_1092(AE0...    33   9.3
AF450933_1(AF450933|pid:none) Drosophila pseudoobscura strain MS...    33   9.3
EF026246_1(EF026246|pid:none) Steinernema carpocapsae Ahn-4 mRNA...    33   9.3
CP001287_2822(CP001287|pid:none) Cyanothece sp. PCC 8801, comple...    33   9.3
(Q54X97) RecName: Full=Eukaryotic translation initiation factor ...    33   9.3

>(Q54HX6) RecName: Full=Myb-like protein I;
          Length = 977

 Score = 38.1 bits (87), Expect = 0.29
 Identities = 20/48 (41%), Positives = 22/48 (45%)
 Frame = +1

Query: 334 HHHQVQMAVHHNQ*IDHHHQVQMEVHLNQ*VDHHHQVNQICHHVQFQQ 477
           HHHQ Q     +    HH Q Q + H  Q    HHQ  Q  HH Q QQ
Sbjct: 71  HHHQQQQQQQQH----HHQQQQQQQHHQQQQQQHHQQQQQHHHQQQQQ 114

 Score = 37.4 bits (85), Expect = 0.49
 Identities = 22/52 (42%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
 Frame = +1

Query: 337 HHQVQMAVHHNQ*IDHHH-----QVQMEVHLNQ*VDHHHQVNQICHHVQFQQ 477
           HHQV     H Q   HHH     Q Q   H  Q    HHQ  Q  HH Q QQ
Sbjct: 55  HHQVMDNSDHEQQQQHHHHQQQQQQQQHHHQQQQQQQHHQQQQQQHHQQQQQ 106

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 299,102,739
Number of extensions: 2540625
Number of successful extensions: 10822
Number of sequences better than 10.0: 40
Number of HSP's gapped: 9769
Number of HSP's successfully gapped: 77
Length of query: 245
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 120
Effective length of database: 646,610,989
Effective search space: 77593318680
Effective search space used: 77593318680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.81  gvh: 0.31  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.56  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 12.0 %: nuclear
	  4.0 %: peroxisomal

>> prediction for Contig-U02384-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 2
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0