>Contig-U02644-1 (Contig-U02644-1Q) /CSM_Contig/Contig-U02644-1Q.Seq.d
ATTTTTTATATTTTCCTTTTTAAAAAACACAAATAATAAAATAACGTTTA
TTCAATATTTATATTTAAATTTCTAAATTAGTTTATTAAAACAGATTATT
ATAAAAATAATTTATCTTAATTAAAAAAAAATAAATAAAAAAAATTAAAT
ATTAATTTTTTAAAATTTCAAAAAAAAA

est1=AFF633F,1,179

FFIFSFLKNTNNKITFIQYLYLNF*isllkqiiikiiyln*kkinkkn*ilif*nfkkk

Frame A:
ifyiflfkkhk**nnvysififkfln*fiktdyyknnls*lkknk*kklninflkfqkk


Frame B:
FFIFSFLKNTNNKITFIQYLYLNF*isllkqiiikiiyln*kkinkkn*ilif*nfkkk


Frame C:
flyfpf*ktqiik*rlfniyi*isklvy*nrll*k*filikkk*ikkiky*ffkiskk

Query= Contig-U02644-1 (Contig-U02644-1Q)
/CSM_Contig/Contig-U02644-1Q.Seq.d
         (178 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02644-1 (Contig-U02644-1Q) /CSM_Contig/Conti...    62  2e-10
Contig-U12720-1 (Contig-U12720-1Q) /CSM_Contig/Conti...    36  0.012
Contig-U06454-1 (Contig-U06454-1Q) /CSM_Contig/Conti...    36  0.012
Contig-U12945-1 (Contig-U12945-1Q) /CSM_Contig/Conti...    32  0.18
Contig-U12806-1 (Contig-U12806-1Q) /CSM_Contig/Conti...    32  0.18
Contig-U05249-1 (Contig-U05249-1Q) /CSM_Contig/Conti...    32  0.18
Contig-U04115-1 (Contig-U04115-1Q) /CSM_Contig/Conti...    32  0.18
Contig-U14739-1 (Contig-U14739-1Q) /CSM_Contig/Conti...    30  0.72
Contig-U14467-1 (Contig-U14467-1Q) /CSM_Contig/Conti...    30  0.72
Contig-U14239-1 (Contig-U14239-1Q) /CSM_Contig/Conti...    30  0.72

>Contig-U02644-1 (Contig-U02644-1Q) /CSM_Contig/Contig-U02644-1Q.Seq.d
          Length = 178

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 22 aaaaaacacaaataataaaataacgtttatt 52
          |||||||||||||||||||||||||||||||
Sbjct: 22 aaaaaacacaaataataaaataacgtttatt 52


>Contig-U12720-1 (Contig-U12720-1Q) /CSM_Contig/Contig-U12720-1Q.Seq.d
          Length = 507

 Score = 36.2 bits (18), Expect = 0.012
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 22 aaaaaacacaaataataa 39
          ||||||||||||||||||
Sbjct: 9  aaaaaacacaaataataa 26


>Contig-U06454-1 (Contig-U06454-1Q) /CSM_Contig/Contig-U06454-1Q.Seq.d
          Length = 327

 Score = 36.2 bits (18), Expect = 0.012
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 23  aaaaacacaaataataaaataa 44
           ||||||| ||||||||||||||
Sbjct: 207 aaaaacataaataataaaataa 228


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2085
Number of Sequences: 6905
Number of extensions: 2085
Number of successful extensions: 797
Number of sequences better than 10.0: 152
length of query: 178
length of database: 5,674,871
effective HSP length: 15
effective length of query: 163
effective length of database: 5,571,296
effective search space: 908121248
effective search space used: 908121248
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U02644-1 (Contig-U02644-1Q) /CSM_Contig/Contig-U02644-1Q.Seq.d
         (178 letters)

Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum3.seq;
ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq;
ddbjhum9.seq; /db/DDBJNEW.DATA/b/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/b/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod10.seq;
ddbjrod11.seq; ddbjrod12.seq; ddbjrod13.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/b/new_ddbjrod.seq;
ddbjmam.seq; /db/DDBJNEW.DATA/b/new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq; ddbjvrt6.seq;
/db/DDBJNEW.DATA/b/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq;
/db/DDBJNEW.DATA/b/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq;
ddbjpln11.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq;
ddbjpln6.seq; ddbjpln7.seq; ddbjpln8.seq; ddbjpln9.seq;
/db/DDBJNEW.DATA/b/new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq;
ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq;
ddbjbct8.seq; ddbjbct9.seq; /db/DDBJNEW.DATA/b/new_ddbjbct.seq;
ddbjvrl1.seq; ddbjvrl2.seq; ddbjvrl3.seq; ddbjvrl4.seq;
/db/DDBJNEW.DATA/b/new_ddbjvrl.seq; ddbjphg.seq;
/db/DDBJNEW.DATA/b/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/b/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss100.seq; ddbjgss101.seq; ddbjgss102.seq; ddbjgss103.seq;
ddbjgss104.seq; ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq;
ddbjgss14.seq; ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq;
ddbjgss18.seq; ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq;
ddbjgss21.seq; ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq;
ddbjgss25.seq; ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq;
ddbjgss29.seq; ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq;
ddbjgss32.seq; ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq;
ddbjgss36.seq; ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss50.seq; ddbjgss51.seq;
ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq; ddbjgss55.seq;
ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq; ddbjgss59.seq;
ddbjgss60.seq; ddbjgss61.seq; ddbjgss62.seq; ddbjgss63.seq;
ddbjgss64.seq; ddbjgss65.seq; ddbjgss66.seq; ddbjgss67.seq;
ddbjgss68.seq; ddbjgss69.seq; ddbjgss7.seq; ddbjgss70.seq;
ddbjgss71.seq; ddbjgss72.seq; ddbjgss73.seq; ddbjgss74.seq;
ddbjgss75.seq; ddbjgss76.seq; ddbjgss77.seq; ddbjgss78.seq;
ddbjgss79.seq; ddbjgss8.seq; ddbjgss80.seq; ddbjgss81.seq;
ddbjgss82.seq; ddbjgss83.seq; ddbjgss84.seq; ddbjgss85.seq;
ddbjgss86.seq; ddbjgss87.seq; ddbjgss88.seq; ddbjgss89.seq;
ddbjgss9.seq; ddbjgss90.seq; ddbjgss91.seq; ddbjgss92.seq;
ddbjgss93.seq; ddbjgss94.seq; ddbjgss95.seq; ddbjgss96.seq;
ddbjgss97.seq; ddbjgss98.seq; ddbjgss99.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/b/new_ddbjgss3.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/b/new_ddbjhtg1.seq;
/db/DDBJNEW.DATA/b/new_ddbjhtg2.seq; ddbjpat1.seq; ddbjpat10.seq;
ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq;
ddbjpat15.seq; ddbjpat16.seq; ddbjpat2.seq; ddbjpat3.seq;
ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq;
ddbjpat9.seq; /db/DDBJNEW.DATA/b/new_ddbjpat.seq; ddbjsts1.seq;
ddbjsts2.seq; ddbjsts3.seq; ddbjsts4.seq;
/db/DDBJNEW.DATA/b/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/b/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/b/new_est_atha1.seq; est_cele1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/b/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/b/new_est_dmel1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/b/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/b/new_est_hum1.seq;
est_lesc1.seq; /db/DDBJNEW.DATA/b/new_est_lesc1.seq; est_mous1.seq;
est_mous2.seq; est_mous3.seq; /db/DDBJNEW.DATA/b/new_est_mous1.seq;
est_osat1.seq; /db/DDBJNEW.DATA/b/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/b/new_est_rnor1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/b/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/b/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; est_rest5.seq;
/db/DDBJNEW.DATA/b/new_est_rest1.seq;
/db/DDBJNEW.DATA/b/new_est_rest2.seq
           39,953,378 sequences; ],318,265,086 total letters

Searching...................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC068469|AC068469.1 Homo sapiens chromosome 2 clone RP11-83H...    38   0.031  2
AC150070|AC150070.1 Gallus gallus clone CH261-85F10, WORKING...    44   0.73   1
AC150195|AC150195.1 Gallus gallus clone WAG-113C22, WORKING ...    44   0.73   1
CR387087|CR387087.1 Gallus gallus finished cDNA, clone ChEST...    44   0.73   1
BE375922|BE375922.1 601229544F1 NCI_CGAP_Mam1 Mus musculus c...    44   0.73   1
CR848002|CR848002.8 Zebrafish DNA sequence *** SEQUENCING IN...    40   0.98   2
DD010736|DD010736.1 Diagnosis of known genetic Parameters wi...    40   1.2    2
AX344565|AX344565.1 Sequence 16 from Patent WO0200932.             40   1.4    2
CK799157|CK799157.1 AGENCOURT_18790984 NICHD_XGC_Te2N Xenopu...    42   2.9    1
AC147554|AC147554.2 Mus musculus BAC clone RP24-274B6 from c...    42   2.9    1
CN327292|CN327292.1 AGENCOURT_22007731 NICHD_XGC_Te2N Xenopu...    42   2.9    1
AL590665|AL590665.9 Human DNA sequence from clone RP11-229H1...    42   2.9    1
CN319430|CN319430.1 AGENCOURT_22007728 NICHD_XGC_Te2N Xenopu...    42   2.9    1
AC034266|AC034266.3 Homo sapiens chromosome 17 clone RP11-68...    42   2.9    1
AX344818|AX344818.1 Sequence 243 from Patent WO0200927.            42   2.9    1
AG248883|AG248883.1 Lotus corniculatus var. japonicus DNA, c...    42   2.9    1
AC005939|AC005939.1 Homo sapiens chromosome 17, clone hRPK.4...    42   2.9    1
BX890575|BX890575.23 Zebrafish DNA sequence from clone CH211...    42   2.9    1
AG321387|AG321387.1 Mus musculus molossinus DNA, clone:MSMg0...    42   2.9    1
BP114631|BP114631.1 Plasmodium berghei strain ANKA cDNA, clo...    34   3.6    2
CL202641|CL202641.1 ZMMBBb0566D12r ZMMBBb (HindIII) Zea mays...    38   6.1    2
AL021332|AL021332.1 Human DNA sequence from clone RP3-398A12...    36   7.7    2
AC130801|AC130801.16 Medicago truncatula clone mth2-12p19, c...    40   9.8    2
CR812482|CR812482.3 Zebrafish DNA sequence *** SEQUENCING IN...    40   11     1
AC147358|AC147358.2 Xenopus tropicalis clone CH216-71J8, com...    40   11     1
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            40   11     1
AC155979|AC155979.1 Xenopus tropicalis clone CH216-64G21, WO...    40   11     1
AC147893|AC147893.2 Xenopus tropicalis clone CH216-36J13, co...    40   11     1
CA788247|CA788247.1 AGENCOURT_11030746 NICHD_XGC_OO1 Xenopus...    40   11     1
BJ091802|BJ091802.1 Xenopus laevis cDNA clone:XL090a10, 3' e...    40   11     1
CR443180|CR443180.1 Xenopus tropicalis EST, clone TTbA032c09...    40   11     1
CB197146|CB197146.2 AGENCOURT_11245297 NICHD_XGC_Tad2 Xenopu...    40   11     1
BP673264|BP673264.2 Xenopus laevis NBRP cDNA clone:XL413e05e...    40   11     1
AC022646|AC022646.3 Homo sapiens clone RP11-28C18, WORKING D...    40   11     1
CL129010|CL129010.1 ISB1-95L3_Sp6.1 ISB1 Xenopus tropicalis ...    40   11     1
CC817755|CC817755.1 1O0003D13R Oxytricha plasmid UUGC1O libr...    40   11     1
BZ695565|BZ695565.1 SP__Ba0065J13.f SP__Ba Sorghum propinquu...    40   11     1
AC090845|AC090845.1 Homo sapiens chromosome 18 clone RP11-73...    40   11     1
AY190950|AY190950.1 Drosophila willistoni clone DWIF01_1_E5 ...    40   11     1
BC084770|BC084770.1 Xenopus laevis hypothetical LOC495310, m...    40   11     1
BC060755|BC060755.1 Xenopus laevis hypothetical protein MGC6...    40   11     1
CX839958|CX839958.1 JGI_CAAK9182.rev NIH_XGC_tropBrn3 Xenopu...    40   11     1
CX441246|CX441246.1 JGI_XZG60462.rev NIH_XGC_tropGas7 Xenopu...    40   11     1
CX324122|CX324122.1 JGI_XZT71539.fwd NIH_XGC_tropTad5 Xenopu...    40   11     1
BE507215|BE507215.1 db92e11.y1 Wellcome CRC pSK animal cap X...    40   11     1
CD326343|CD326343.1 AGENCOURT_14149941 NICHD_XGC_Eye1 Xenopu...    40   11     1
AP002003|AP002003.3 Homo sapiens genomic DNA, chromosome 11q...    40   11     1
CL131428|CL131428.1 ISB1-99J19_T7.1 ISB1 Xenopus tropicalis ...    40   11     1
CL128889|CL128889.1 ISB1-95G22_Sp6.1 ISB1 Xenopus tropicalis...    40   11     1
AC148456|AC148456.2 Xenopus tropicalis clone CH216-168B18, c...    40   11     1
X83674|X83674.1 X.laevis SSB2 gene.                                40   11     1
CX826703|CX826703.1 JGI_CAAK5295.rev NIH_XGC_tropBrn3 Xenopu...    40   11     1
AL648940|AL648940.2 Xenopus tropicalis EST, clone TGas033d14...    40   11     1
BP720915|BP720915.1 Xenopus laevis NBRP cDNA clone:XL447m18e...    40   11     1
BJ037510|BJ037510.1 Xenopus laevis cDNA clone:XL040l19, 5' e...    40   11     1
AC149515|AC149515.1 Xenopus tropicalis clone CH216-35C7, WOR...    40   11     1
AC011127|AC011127.6 Homo sapiens chromosome 18 clone RP11-11...    40   11     1
AG390233|AG390233.1 Mus musculus molossinus DNA, clone:MSMg0...    40   11     1
BC089150|BC089150.1 Xenopus laevis cDNA clone MGC:85050 IMAG...    40   11     1
CX814932|CX814932.1 JGI_CAAK702.rev NIH_XGC_tropBrn3 Xenopus...    40   11     1
CX358409|CX358409.1 JGI_XZT9.fwd NIH_XGC_tropTad5 Xenopus tr...    40   11     1
CR565905|CR565905.1 Xenopus tropicalis EST, clone THdA013o06...    40   11     1
BX692974|BX692974.1 Xenopus tropicalis EST, clone TNeu097i21...    40   11     1
AW640057|AW640057.1 bl90e07.w1 Blackshear/Soares normalized ...    40   11     1
CK805901|CK805901.1 AGENCOURT_19144481 NICHD_XGC_Te2 Xenopus...    40   11     1
DD010735|DD010735.1 Diagnosis of known genetic Parameters wi...    40   11     1
AC148993|AC148993.1 frog geminen, complete sequence.               40   11     1
CX378146|CX378146.1 JGI_XZT35059.fwd NIH_XGC_tropTad5 Xenopu...    40   11     1
AL629280|AL629280.1 Xenopus tropicalis EST, clone TGas012m17...    40   11     1
BP713532|BP713532.1 Xenopus laevis NBRP cDNA clone:XL421d19e...    40   11     1
CQ807275|CQ807275.1 Sequence 725 from Patent WO2004035803.         40   11     1
CQ807001|CQ807001.1 Sequence 451 from Patent WO2004035803.         40   11     1
CL143415|CL143415.1 ISB1-122L16_Sp6.1 ISB1 Xenopus tropicali...    40   11     1
CL056685|CL056685.1 CH216-83H24_RM1.1 CH216 Xenopus tropical...    40   11     1
CC241284|CC241284.1 CH261-141I18_RM1.1 CH261 Gallus gallus g...    40   11     1
AL928930|AL928930.9 Mouse DNA sequence from clone RP23-386P7...    40   11     1
AP002002|AP002002.4 Homo sapiens genomic DNA, chromosome 11q...    40   11     1
CX800577|CX800577.1 JGI_CAAJ14478.rev NIH_XGC_tropBrn2 Xenop...    40   11     1
CV830273|CV830273.1 ID0ACC15AC09RM1 ID0ACC Acyrthosiphon pis...    40   11     1
BJ626009|BJ626009.1 Xenopus laevis cDNA clone:XL213g02, 5' end.    40   11     1
BX901898|BX901898.11 Zebrafish DNA sequence *** SEQUENCING I...    40   11     1
AC145790|AC145790.1 Xenopus tropicalis clone CH216-12L5, WOR...    40   11     1
AC107046|AC107046.3 Mus musculus clone RP23-321F12, WORKING ...    40   11     1
X83673|X83673.1 X.laevis SSB1 gene.                                40   11     1
AL887676|AL887676.2 Xenopus tropicalis EST, clone TEgg082c07...    40   11     1
BX740548|BX740548.1 Xenopus tropicalis EST, clone TTpA039a24...    40   11     1
BX850730|BX850730.1 RZPD Xenopus laevis cDNA clone IMAGp998P...    40   11     1
BJ622366|BJ622366.1 Xenopus laevis cDNA clone:XL200l15, 5' end.    40   11     1
BG394598|BG394598.1 602456740F1 NIH_MGC_16 Homo sapiens cDNA...    40   11     1
AX344564|AX344564.1 Sequence 15 from Patent WO0200932.             40   11     1
AX344560|AX344560.1 Sequence 11 from Patent WO0200932.             40   11     1
AX344554|AX344554.1 Sequence 5 from Patent WO0200932.              40   11     1
AC157721|AC157721.1 Xenopus tropicalis clone ISB1-273N16, WO...    40   11     1
AC151468|AC151468.2 Xenopus tropicalis BAC clone ISB-42G17 c...    40   11     1
AC150447|AC150447.2 Xenopus tropicalis clone CH216-77E13, WO...    40   11     1
CL080150|CL080150.1 CH216-157L3_Sp5.1 CH216 Xenopus tropical...    40   11     1
AL645729|AL645729.14 Human DNA sequence from clone RP11-318E...    40   11     1
BU900557|BU900557.1 AGENCOURT_10207950 NICHD_XGC_Ov1 Xenopus...    40   11     1
BP676204|BP676204.1 Xenopus laevis NBRP cDNA clone:XL421d19e...    40   11     1
BJ624873|BJ624873.1 Xenopus laevis cDNA clone:XL209n08, 5' end.    40   11     1

>AC068469|AC068469.1 Homo sapiens chromosome 2 clone RP11-83H15 map 2,
             LOW-PASS SEQUENCE SAMPLING.
          Length = 62320

 Score = 38.2 bits (19), Expect(2) = 0.031
 Identities = 22/23 (95%)
 Strand = Plus / Minus


Query: 22    aaaaaacacaaataataaaataa 44
             |||||||||||| ||||||||||
Sbjct: 10479 aaaaaacacaaaaaataaaataa 10457

 Score = 38.2 bits (19), Expect(2) = 0.031
 Identities = 22/23 (95%)
 Strand = Plus / Plus


Query: 22   aaaaaacacaaataataaaataa 44
            |||||||||||| ||||||||||
Sbjct: 4955 aaaaaacacaaaaaataaaataa 4977

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 2,578,700
Number of Sequences: 39953378
Number of extensions: 2578700
Number of successful extensions: 862547
Number of sequences better than 10.0: 337
length of query: 178
length of database: ],318,265,086
effective HSP length: 22
effective length of query: 156
effective length of database: \,439,290,770
effective search space: 6932529360120
effective search space used: 6932529360120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING:  [000.000]  Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

Query= Contig-U02644-1 (Contig-U02644-1Q) /CSM_Contig/Contig-U02644-1Q.Seq.d
         (178 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 99,200,375
Number of extensions: 565959
Number of successful extensions: 900
Number of sequences better than 10.0: 0
Number of HSP's gapped: 900
Number of HSP's successfully gapped: 0
Length of query: 59
Length of database: 1,051,180,864
Length adjustment: 31
Effective length of query: 28
Effective length of database: 950,847,535
Effective search space: 26623730980
Effective search space used: 26623730980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 26 (14.6 bits)

 psg: 0.61  gvh: 0.12  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.41  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U02644-1 is nuc