Contig-U02849-1
Contig ID Contig-U02849-1
Contig update 2001. 8.29
Contig sequence
>Contig-U02849-1 (Contig-U02849-1Q) /CSM_Contig/Contig-U02849-1Q.Seq.d
TTTAATTGCAGAGATTGTAATAGATCAATCATCACCAGGTTCTTCTGCAT
CTTTAGTTGAAACTATGCAATCTGCTATTGACTTTTTAAGACATAAAGAA
ATCATTTCAAAATCAACACTTGGTATATTATTATTAATTATTAACCATTC
TAAATTTAATCAACATTTACAATTTGAATATTTATCAAAGATTATGTATG
AATCAAATGCATTGGTTTTATTATATAAATGTTTAAATCATGAATCAGTT
GAAAAGTATTTATTTTCACAAAATTATTTAAATAGTGAAGAGTATTTCAA
TGAAGAATCATTACCATCATCATCTGCAGCATCACCACCACCACCACCAA
TATTTCAACCATTAAATTGTAGTGGTAGTAGTATCAATAGTATTAGTAGT
GGTGGTGCAGGTTGTGAAGGTGGTGGTGCTAATCCACCACCAGTGCAATT
ATTTGAAAATTATAAAAATTTATTTAGTACAATAACAAGTTTAAAATTAA
TTCAAAAAGTTATGAAACATCATCCATCAAGAATTTCTTCTTTATCTGCT
TCAAAATCTGCTAATATTTTAAAAAAATATTGTTCAATTAATCATCCAAT
GATTAGATTATATAGTTTAAAAGTTATAAAGAATTTAGTACCATATCAAA
CAAAGAAATGGAAACAAATTAATATGAGAATTATATCAGATATTTATTTA
GAAGTACCAATTCATATTAATGATAATTGGTTATTTAGTCATAATAGTGC
AATCAATAATAATAATAATAATAGTAACAATAACAATAATAATAATAATA
ATAATAGTACAAATAATGATAATGGTTTAACTGATGAACATGAAGTTACA
CTTCAAGAGAAAGTTGAAGAATATCATAGAGTAAATTATGAACAATGGTA
TACAAATGATGGTTTAGATATGTGTTATAAAAATGATCATTCAATGGGTA
TTGGTATTTTTGATGACTTATTAAATTCATTA

Gap no gap
Contig length 982
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1792189
End point 1793171
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U02849
List of clone(s)

est1=AFJ508F,1,650
est2=SSI745F,294,983
Translated Amino Acid sequence
LIAEIVIDQSSPGSSASLVETMQSAIDFLRHKEIISKSTLGILLLIINHSKFNQHLQFEY
LSKIMYESNALVLLYKCLNHESVEKYLFSQNYLNSEEYFNEESLPSSSAASPPPPPIFQP
LNCSGSSINSISSGGAGCEGGGANPPPVQLFENYKNLFSTITSLKLIQKVMKHHPSRISS
LSASKSANILKKYCSINHPMIRLYSLKVIKNLVPYQTKKWKQINMRIISDIYLEVPIHIN
DNWLFSHNSAINNNNNNSNNNNNNNNNNSTNNDNGLTDEHEVTLQEKVEEYHRVNYEQWY
TNDGLDMCYKNDHSMGIGIFDDLLNSL


Translated Amino Acid sequence (All Frames)
Frame A:
fncrdcnrsiitrffcifs*nyaicy*lfkt*rnhfkintwyiiiny*pf*i*stfti*i
fikdyv*ikcigfii*mfks*is*kvfiftklfk**rvfq*riitiiicsitttttnist
ikl*w**yq*y**wwcrl*rwwc*sttsaii*kl*kfi*ynnkfkinsksyetssiknff
ficfkic*yfkkilfn*ssnd*ii*fksykefstisnkemetn*yenyirylfrstnsy*
**lvi*s**cnq*******q*q*******yk***wfn**t*sytsres*ris*skl*tmv
yk*wfryvl*k*sfngywyf**likfi


Frame B:
LIAEIVIDQSSPGSSASLVETMQSAIDFLRHKEIISKSTLGILLLIINHSKFNQHLQFEY
LSKIMYESNALVLLYKCLNHESVEKYLFSQNYLNSEEYFNEESLPSSSAASPPPPPIFQP
LNCSGSSINSISSGGAGCEGGGANPPPVQLFENYKNLFSTITSLKLIQKVMKHHPSRISS
LSASKSANILKKYCSINHPMIRLYSLKVIKNLVPYQTKKWKQINMRIISDIYLEVPIHIN
DNWLFSHNSAINNNNNNSNNNNNNNNNNSTNNDNGLTDEHEVTLQEKVEEYHRVNYEQWY
TNDGLDMCYKNDHSMGIGIFDDLLNSL


Frame C:
*lqrl**inhhqvllhl*lklcnllltf*dikksfqnqhlvyyy*lltilnliniynlni
yqrlcmnqmhwfyyinv*imnqlksiyfhkii*ivksismknhyhhhlqhhhhhhqyfnh
*ivvvvvsivlvvvvqvvkvvvlihhqcnylkiikiylvq*qv*n*fkkl*niihqefll
yllqnllif*knivqliiq*ldyiv*kl*ri*yhikqrngnkli*elyqifi*kyqfilm
iigylviivqsiiiiiivtitiiiiiiivqimimv*lmnmklhfkrklkniie*imnngi
qmmv*icvikmiiqwvlvflmty*ih


own update 2004. 6. 9
Homology vs CSM-cDNA
Query= Contig-U02849-1 (Contig-U02849-1Q)
/CSM_Contig/Contig-U02849-1Q.Seq.d
(982 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U02849-1 (Contig-U02849-1Q) /CSM_Contig/Conti... 733 0.0
Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11309-1 (Contig-U11309-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11081-1 (Contig-U11081-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U02820-1 (Contig-U02820-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U12364-1 (Contig-U12364-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U12262-1 (Contig-U12262-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U12060-1 (Contig-U12060-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U11805-1 (Contig-U11805-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U11701-1 (Contig-U11701-1Q) /CSM_Contig/Conti... 38 0.018

>Contig-U02849-1 (Contig-U02849-1Q) /CSM_Contig/Contig-U02849-1Q.Seq.d
Length = 982

Score = 733 bits (370), Expect = 0.0
Identities = 384/391 (98%)
Strand = Plus / Plus


Query: 350 atatttcaaccattaaattgtagtggtagtagtatcaatagtattagtagtggtggtgca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atatttcaaccattaaattgtagtggtagtagtatcaatagtattagtagtggtggtgca 409


Query: 410 ggttgtgaaggtggtggtgctaatccaccaccagtgcaattatttgaaaattataaaaat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggttgtgaaggtggtggtgctaatccaccaccagtgcaattatttgaaaattataaaaat 469


Query: 470 ttatttagtacaataacaagtttaaaattaattcaaaaagttatgaaacatcatccatca 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ttatttagtacaataacaagtttaaaattaattcaaaaagttatgaaacatcatccatca 529


Query: 530 agaatttcttctttatctgcttcaaaatctgctaatattttnnnnnnntattgttcaatt 589
||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 530 agaatttcttctttatctgcttcaaaatctgctaatattttaaaaaaatattgttcaatt 589


Query: 590 aatcatccaatgattagattatatagtttaaaagttataaagaatttagtaccatatcaa 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 aatcatccaatgattagattatatagtttaaaagttataaagaatttagtaccatatcaa 649


Query: 650 acaaagaaatggaaacaaattaatatgagaattatatcagatatttatttagaagtacca 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 acaaagaaatggaaacaaattaatatgagaattatatcagatatttatttagaagtacca 709


Query: 710 attcatattaatgataattggttatttagtc 740
|||||||||||||||||||||||||||||||
Sbjct: 710 attcatattaatgataattggttatttagtc 740


Score = 658 bits (332), Expect = 0.0
Identities = 332/332 (100%)
Strand = Plus / Plus


Query: 1 tttaattgcagagattgtaatagatcaatcatcaccaggttcttctgcatctttagttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttaattgcagagattgtaatagatcaatcatcaccaggttcttctgcatctttagttga 60


Query: 61 aactatgcaatctgctattgactttttaagacataaagaaatcatttcaaaatcaacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aactatgcaatctgctattgactttttaagacataaagaaatcatttcaaaatcaacact 120


Query: 121 tggtatattattattaattattaaccattctaaatttaatcaacatttacaatttgaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggtatattattattaattattaaccattctaaatttaatcaacatttacaatttgaata 180


Query: 181 tttatcaaagattatgtatgaatcaaatgcattggttttattatataaatgtttaaatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttatcaaagattatgtatgaatcaaatgcattggttttattatataaatgtttaaatca 240


Query: 241 tgaatcagttgaaaagtatttattttcacaaaattatttaaatagtgaagagtatttcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgaatcagttgaaaagtatttattttcacaaaattatttaaatagtgaagagtatttcaa 300


Query: 301 tgaagaatcattaccatcatcatctgcagcat 332
||||||||||||||||||||||||||||||||
Sbjct: 301 tgaagaatcattaccatcatcatctgcagcat 332


Score = 315 bits (159), Expect = 5e-86
Identities = 159/159 (100%)
Strand = Plus / Plus


Query: 824 ggtttaactgatgaacatgaagttacacttcaagagaaagttgaagaatatcatagagta 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 ggtttaactgatgaacatgaagttacacttcaagagaaagttgaagaatatcatagagta 883


Query: 884 aattatgaacaatggtatacaaatgatggtttagatatgtgttataaaaatgatcattca 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 aattatgaacaatggtatacaaatgatggtttagatatgtgttataaaaatgatcattca 943


Query: 944 atgggtattggtatttttgatgacttattaaattcatta 982
|||||||||||||||||||||||||||||||||||||||
Sbjct: 944 atgggtattggtatttttgatgacttattaaattcatta 982


>Contig-U12467-1 (Contig-U12467-1Q) /CSM_Contig/Contig-U12467-1Q.Seq.d
Length = 1279

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 382 tatcaatagtattagtagtgg 402
|||||||||||||||||||||
Sbjct: 724 tatcaatagtattagtagtgg 744


Score = 34.2 bits (17), Expect = 0.27
Identities = 26/29 (89%)
Strand = Plus / Plus


Query: 372 gtggtagtagtatcaatagtattagtagt 400
||||| |||||| |||||||||||||||
Sbjct: 798 gtggtggtagtagtaatagtattagtagt 826


Score = 32.2 bits (16), Expect = 1.1
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 388 tagtattagtagtggtggtg 407
||||| ||||||||||||||
Sbjct: 784 tagtaatagtagtggtggtg 803


>Contig-U11309-1 (Contig-U11309-1Q) /CSM_Contig/Contig-U11309-1Q.Seq.d
Length = 1402

Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus


Query: 447 aattatttgaaaattataaaaatttattt 475
|||||||| |||||| |||||||||||||
Sbjct: 177 aattatttaaaaattctaaaaatttattt 149


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 30,059
Number of Sequences: 6905
Number of extensions: 30059
Number of successful extensions: 3363
Number of sequences better than 10.0: 412
length of query: 982
length of database: 5,674,871
effective HSP length: 16
effective length of query: 966
effective length of database: 5,564,391
effective search space: 5375201706
effective search space used: 5375201706
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.23
Homology vs DNA
Query= Contig-U02849-1 (Contig-U02849-1Q) /CSM_Contig/Contig-U02849-1Q.Seq.d
(982 letters)

Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ327372) Dictyostelium discoideum cDNA clone:dda20o01, 5' ... 295 0.0 5
(AU073918) Dictyostelium discoideum slug cDNA, clone SSI745. 365 e-113 2
(DL173519) Methods for Identifying the Target of a Compound ... 38 0.007 3
(AX489079) Sequence 6379 from Patent WO02053728. 38 0.007 3
(BX908784) Zebrafish DNA sequence from clone DKEY-69I13. 54 0.010 1
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 38 0.014 11
(CL568203) OB__Ba0040N08.f OB__Ba Oryza brachyantha genomic ... 38 0.018 3
(AC198625) Pan troglodytes BAC clone CH251-456C7 from chromo... 36 0.018 7
(DQ927304) Tetrahymena paravorax strain RP mitochondrion, co... 36 0.030 7
(EK350443) 1095467914572 Global-Ocean-Sampling_GS-31-01-01-1... 38 0.031 3
(CE193686) tigr-gss-dog-17000371482556 Dog Library Canis lup... 52 0.041 1
(CE011169) tigr-gss-dog-17000321024637 Dog Library Canis lup... 52 0.041 1
(AL929512) Zebrafish DNA sequence from clone CH211-1L10 in l... 38 0.045 8
(CW901067) RPCI42_137L19.TJ RPCI-42 Bos taurus genomic clone... 42 0.062 3
(AM448476) Vitis vinifera contig VV78X212918.10, whole genom... 44 0.066 2
(AC180003) Strongylocentrotus purpuratus clone R3-16P13, WOR... 40 0.098 2
(AC176800) Strongylocentrotus purpuratus clone R3-1110K11, W... 40 0.099 2
(AC174002) Strongylocentrotus purpuratus clone R3-17O13, WOR... 40 0.099 2
(AC012595) Homo sapiens BAC clone RP11-539J22 from 2, comple... 44 0.11 2
(FM980190) Glossina morsitans morsitans EST, clone GMsg163c0... 38 0.13 2
(DV604649) EST1207645 Glossina morsitans morsitans Fat body ... 38 0.13 2
(AC233384) Solanum tuberosum chromosome 5 clone RH043P07, **... 36 0.16 8
(AC114113) Rattus norvegicus clone CH230-186O3, WORKING DRAF... 50 0.16 1
(AC112456) Rattus norvegicus clone CH230-110N23, *** SEQUENC... 50 0.16 1
(AX458490) Sequence 36 from Patent WO0246454. 34 0.17 5
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 40 0.23 6
(AP001251) Homo sapiens genomic DNA, chromosome 21q21.1-q21.... 34 0.24 7
(CU915717) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 0.25 5
(BK006336) TPA_exp: Drosophila ananassae mitochondrion, comp... 36 0.27 4
(AC189234) Brassica rapa subsp. pekinensis clone KBrB014C24,... 40 0.27 5
(AC110633) Rattus norvegicus clone CH230-262J17, *** SEQUENC... 36 0.33 2
(AC025581) Mus musculus clone RP23-207O20, WORKING DRAFT SEQ... 38 0.36 2
(AC176202) Strongylocentrotus purpuratus clone R3-3005B8, WO... 38 0.36 2
(AC179918) Strongylocentrotus purpuratus clone R3-1003C24, W... 38 0.36 2
(AC179281) Strongylocentrotus purpuratus clone R3-45F13, WOR... 38 0.36 2
(AC153828) Mus musculus 6 BAC RP23-119D13 (Roswell Park Canc... 38 0.36 2
(AZ606637) 1M0428H08R Mouse 10kb plasmid UUGC1M library Mus ... 40 0.36 2
(AC160032) Mus musculus 6 BAC RP24-179I4 (Roswell Park Cance... 38 0.36 2
(AC111324) Rattus norvegicus clone CH230-241B12, WORKING DRA... 36 0.36 2
(AC180692) Strongylocentrotus purpuratus clone R3-3087B11, W... 34 0.36 2
(AC201076) Strongylocentrotus purpuratus clone R3-13B20, WOR... 38 0.36 2
(AC179658) Strongylocentrotus purpuratus clone R3-1024G10, W... 34 0.37 2
(AC177242) Strongylocentrotus purpuratus clone R3-43B10, WOR... 34 0.37 2
(AC181640) Strongylocentrotus purpuratus clone R3-1103G06, W... 34 0.37 2
(AC177219) Strongylocentrotus purpuratus clone R3-1034M09, W... 34 0.37 2
(FP236450) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.37 2
(AZ606553) 1M0428H06R Mouse 10kb plasmid UUGC1M library Mus ... 40 0.45 2
(EY371916) CAXA1372.fwd CAXA Helobdella robusta Subtracted L... 34 0.47 2
(BI452062) GI04_A09 Glomus intraradices extra-radical myceli... 40 0.47 2
(AM463107) Vitis vinifera, whole genome shotgun sequence, co... 38 0.58 3
(AC178068) Strongylocentrotus purpuratus clone R3-3059B15, W... 46 0.63 4
(CQ574137) Sequence 1895 from Patent WO0171042. 48 0.64 1
(CQ574136) Sequence 1894 from Patent WO0171042. 48 0.64 1
(U47849) Drosophila melanogaster Lozenge (lz) mRNA, complete... 48 0.64 1
(DQ397338) Drosophila melanogaster Lozenge splice variant (L... 48 0.64 1
(AF217651) Drosophila melanogaster c11.1 gene, partial cds; ... 48 0.64 1
(AE014298) Drosophila melanogaster chromosome X, complete se... 48 0.64 1
(AC105350) Drosophila melanogaster X BAC RP98-30C13 (Roswell... 48 0.64 1
(AC119653) Rattus norvegicus clone CH230-238B21, WORKING DRA... 48 0.64 1
(AC112084) Rattus norvegicus clone CH230-239N20, WORKING DRA... 48 0.64 1
(AC103252) Rattus norvegicus clone CH230-154M24, WORKING DRA... 48 0.64 1
(AC184661) Strongylocentrotus purpuratus clone R3-1034K14, W... 48 0.64 1
(AC180792) Strongylocentrotus purpuratus clone R3-3073F16, W... 48 0.64 1
(AC177199) Strongylocentrotus purpuratus clone R3-4018N2, WO... 48 0.64 1
(AC176348) Strongylocentrotus purpuratus clone R3-3048N10, W... 48 0.64 1
(AC174098) Strongylocentrotus purpuratus clone R3-1031N7, WO... 48 0.64 1
(AC019881) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 48 0.64 1
(CL101181) ISB1-38B15_T7.1 ISB1 Xenopus (Silurana) tropicali... 48 0.64 1
(CD339273) StrPu536.003094 Sea urchin embryo 40hr gastrula s... 48 0.64 1
(AR550271) Sequence 5402 from patent US 6747137. 38 0.65 2
(AL935296) Zebrafish DNA sequence from clone CH211-281F5. 46 0.66 4
(EF568108) Glossina pallidipes salivary gland hypertrophy vi... 38 0.68 7
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 0.79 15
(AC140736) Rattus norvegicus clone CH230-481N12, WORKING DRA... 40 0.82 7
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 38 0.85 10
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 32 0.88 12
(AC189544) Brassica rapa subsp. pekinensis clone KBrH004I05,... 34 0.93 7
(AC171135) Helobdella robusta clone CH306-1A6, complete sequ... 40 1.1 5
(AC234722) Brassica rapa subsp. pekinensis chromosome Linkag... 40 1.2 6
(AC095424) Rattus norvegicus clone CH230-7A8, *** SEQUENCING... 34 1.3 2
(AC006281) Plasmodium falciparum chromosome 12 clone PFYACB8... 38 1.3 10
(Z98551) Plasmodium falciparum MAL3P6. 36 1.3 8
(AC112086) Rattus norvegicus clone CH230-332D11, *** SEQUENC... 34 1.3 2
(AC113755) Rattus norvegicus clone CH230-193C1, *** SEQUENCI... 34 1.3 2
(AC115510) Rattus norvegicus clone CH230-383C9, *** SEQUENCI... 34 1.3 2
(CR376747) Zebrafish DNA sequence from clone CH211-248D20 in... 36 1.3 2
(AC178476) Strongylocentrotus purpuratus clone R3-3039C18, W... 34 1.3 2
(AC170714) Atelerix albiventris clone LB4-323J17, WORKING DR... 32 1.3 2
(AC180297) Strongylocentrotus purpuratus clone R3-3119J08, W... 34 1.4 2
(AC181787) Strongylocentrotus purpuratus clone R3-1030C18, W... 32 1.4 2
(AM433482) Vitis vinifera contig VV78X125871.6, whole genome... 32 1.4 2
(CT956088) Zebrafish DNA sequence from clone CH73-231O19 in ... 36 1.4 2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 32 1.5 17
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 1.5 9
(AM426759) Vitis vinifera contig VV78X120474.15, whole genom... 32 1.5 2
(AC180611) Strongylocentrotus purpuratus clone R3-3090N1, WO... 40 1.6 2
(AF402141) Schizophyllum commune mitochondrial DNA, complete... 32 1.7 6
(BG851798) 1024032D03.x2 C. reinhardtii CC-1690, normalized,... 36 1.7 2
(AL096023) Arabidopsis thaliana genome survey sequence SP6 e... 36 1.7 2
(ER515862) 1093015513596 Global-Ocean-Sampling_GS-35-01-01-1... 36 1.7 2
(EY297574) CAWX13438.fwd CAWX Helobdella robusta Primary Ear... 32 1.7 2
(FE784602) CCAG13909.g1 CCAG Petrolisthes cinctipes heart, g... 32 1.8 2
(AZ525866) 249PbA11 Pb MBN #21 Plasmodium berghei genomic 3'... 34 1.8 2
(AC177507) Strongylocentrotus purpuratus clone R3-9F22, WORK... 38 1.8 6
(FE784601) CCAG13909.b7 CCAG Petrolisthes cinctipes heart, g... 32 1.8 2
(AL833796) Mouse DNA sequence from clone RP23-361A12 on chro... 40 1.8 6
(CU772149) A BAC library has been constructed from PN40024 g... 32 1.8 2
(AB018110) Arabidopsis thaliana genomic DNA, chromosome 5, T... 40 1.9 3
(CU656030) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.0 6
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-... 34 2.2 7
(EK215231) 1095460116395 Global-Ocean-Sampling_GS-31-01-01-1... 40 2.2 2
(ED378253) AUAC-aaq92f09.b1 Ascaris suum whole genome shotgu... 42 2.2 2
(AC201056) Strongylocentrotus purpuratus clone R3-12O16, WOR... 38 2.2 4
(AC182225) Bos taurus clone CH240-397B8, WORKING DRAFT SEQUE... 38 2.3 9
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 32 2.3 9
(AL954144) Zebrafish DNA sequence from clone CH211-206L15. 38 2.5 5
(AC176898) Strongylocentrotus purpuratus clone R3-31M16, WOR... 44 2.5 5
(CR855374) Zebrafish DNA sequence from clone CH211-9M16 in l... 46 2.5 1
(CR450787) Zebrafish DNA sequence from clone CH211-222O17 in... 46 2.5 1
(BX936418) Zebrafish DNA sequence from clone CH211-157C24 in... 46 2.5 1
(BX470221) Zebrafish DNA sequence from clone CH211-86K6 in l... 46 2.5 1
(BX323065) Zebrafish DNA sequence from clone DKEYP-68F6 in l... 46 2.5 1
(AL844887) Zebrafish DNA sequence from clone DKEY-66C10. 46 2.5 1
(AL663059) Mouse DNA sequence from clone RP23-331C1 on chrom... 46 2.5 1
(AM431892) Vitis vinifera contig VV78X235556.5, whole genome... 46 2.5 1
(AC188645) Canis Familiaris chromosome 21, clone XX-380O6, c... 46 2.5 1
(AC187968) Canis Familiaris, clone XX-151D9, complete sequence. 46 2.5 1
(Z81449) Caenorhabditis elegans Cosmid C46F11. 46 2.5 1
(FJ440151) Moneuplotes crassus selenoprotein W (eSelW1) gene... 46 2.5 1
(EU794031) Portunus trituberculatus clone CGT1F5 microsatell... 46 2.5 1
(AL357503) Human DNA sequence from clone RP5-899C14 on chrom... 46 2.5 1
(AC139726) Danio rerio strain Tue clone CH211-45A23, WORKING... 46 2.5 1
(AC137335) Rattus norvegicus clone CH230-unknown, *** SEQUEN... 46 2.5 1
(AC132496) Rattus norvegicus clone CH230-374P21, *** SEQUENC... 46 2.5 1
(AC130505) Rattus norvegicus clone CH230-169D16, WORKING DRA... 46 2.5 1
(AC125500) Takifugu rubripes clone 206P3, WORKING DRAFT SEQU... 46 2.5 1
(AC118125) Rattus norvegicus clone CH230-465D13, WORKING DRA... 46 2.5 1
(AC104289) Rattus norvegicus clone CH230-124G1, WORKING DRAF... 46 2.5 1
(AC098014) Rattus norvegicus clone CH230-111A3, WORKING DRAF... 46 2.5 1
(AC097207) Rattus norvegicus clone CH230-42K23, *** SEQUENCI... 46 2.5 1
(CU467991) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.5 1
(CU104754) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 46 2.5 1
(AC187214) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 46 2.5 1
(AC184599) Strongylocentrotus purpuratus clone R3-3103M10, W... 46 2.5 1
(AC184299) Strongylocentrotus purpuratus clone R3-113L3, WOR... 46 2.5 1
(AC179893) Strongylocentrotus purpuratus clone R3-1004C24, W... 46 2.5 1
(AC178560) Strongylocentrotus purpuratus clone R3-113K13, WO... 46 2.5 1
(AC178344) Strongylocentrotus purpuratus clone R3-3105E13, W... 46 2.5 1
(FH666181) CHO_OF5015xd18f1.ab1 CHO_OF5 Nicotiana tabacum ge... 46 2.5 1
(FH437955) CHO_OF4999xg08r1.ab1 CHO_OF4 Nicotiana tabacum ge... 46 2.5 1
(EK066218) 1092960127650 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.5 1
(EK062765) 1092960097858 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.5 1
(ED807373) ML__Ba0020G01f ML__Ba Mimulus lewisii genomic, ge... 46 2.5 1
(DX534429) GH_MBb0039H24r GH_MBb Gossypium hirsutum genomic ... 46 2.5 1
(DX401360) GH__Sa0048D08.b1 Gossypium herbaceum WGS library ... 46 2.5 1
(DX395617) GE__Sa0023C11.b1 Gossypium exiguum WGS library Go... 46 2.5 1
(AL064203) Drosophila melanogaster genome survey sequence T7... 46 2.5 1
(CW525904) OP__Ba0024B04.f OP__Ba Oryza punctata genomic clo... 46 2.5 1
(CE464899) tigr-gss-dog-17000363460468 Dog Library Canis lup... 46 2.5 1
(EH739044) CNMS12444.b1_H15.ab1 CNM(LMS) spotted knapweed Ce... 46 2.5 1
(DV738600) ID0AFF11AF01CM1 ID0AFF Acyrthosiphon pisum cDNA c... 46 2.5 1
(BU804588) haa49h08.y2 Fugu UT12 adult muscle Takifugu rubri... 46 2.5 1
(AA545853) SWMFCA2391SK Brugia malayi microfilaria cDNA (SAW... 46 2.5 1
(CP000749) Marinomonas sp. MWYL1, complete genome. 46 2.5 1
(CP000683) Rickettsia massiliae MTU5, complete genome. 46 2.5 1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 46 2.5 1
(CW329734) 104_826_11480001_116_35995_041 Sorghum methylatio... 34 2.7 3
(AC232519) Brassica rapa subsp. pekinensis clone KBrB072K21,... 36 2.9 6
(AY653005) Tetrahymena thermophila clone Cbs 1L-4 chromosome... 38 3.1 2
(FP102386) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 3.1 5
(AC176068) Strongylocentrotus purpuratus clone R3-1F21, WORK... 44 3.2 5
(AC176529) Strongylocentrotus purpuratus clone R3-3075J08, W... 40 3.2 2
(AC146997) Arbacia punctulata clone BAP-144G2, WORKING DRAFT... 38 3.4 7
(X95276) Plasmodium falciparum complete gene map of plastid-... 30 3.5 5
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 30 3.5 12
(AC231452) Mustela putorius furo clone CH237-428O13, WORKING... 36 3.7 8
(AC170140) Bos taurus clone CH240-217L5, WORKING DRAFT SEQUE... 44 3.7 5
(CR788236) Zebrafish DNA sequence from clone DKEY-92F12 in l... 34 3.8 5
(AL954189) Mouse DNA sequence from clone RP23-405M24 on chro... 36 3.8 7
(AE014820) Plasmodium falciparum 3D7 chromosome 14 section 5... 34 3.8 8
(AC140783) Mus musculus BAC clone RP24-253K16 from chromosom... 32 3.9 8
(CU607091) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 3.9 7
(AC201202) Strongylocentrotus purpuratus clone R3-15C22, WOR... 38 3.9 5
(CU855745) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 4.0 4
(AC015696) Homo sapiens clone RP11-88I5, WORKING DRAFT SEQUE... 40 4.0 4
(AC175857) Strongylocentrotus purpuratus clone R3-15H22, WOR... 34 4.0 6
(AC232714) Solanum lycopersicum chromosome 05 clone C05SLm00... 32 4.0 5
(EJ601034) 1092961183543 Global-Ocean-Sampling_GS-29-01-01-1... 40 4.2 2
(AX345795) Sequence 866 from Patent WO0200928. 34 4.3 4
(AC174304) Medicago truncatula clone mth2-108f8, complete se... 32 4.3 9
(AC181431) Strongylocentrotus purpuratus clone R3-1111P22, W... 32 4.3 8
(AC180230) Strongylocentrotus purpuratus clone R3-36M18, WOR... 34 4.4 7
(AM435185) Vitis vinifera contig VV78X084883.6, whole genome... 38 4.5 4
(AC168502) Strongylocentrotus purpuratus clone R3-3117D16, W... 32 4.5 2
(AC215978) Felis catus clone RP86-506H22, WORKING DRAFT SEQU... 38 4.6 5
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 4.6 2
(AC127156) Rattus norvegicus clone CH230-7B10, *** SEQUENCIN... 32 4.7 2
(AC119130) Rattus norvegicus clone CH230-414I23, *** SEQUENC... 32 4.7 2
(CR384057) Zebrafish DNA sequence from clone CH211-243K10 in... 38 4.7 6
(AC095303) Rattus norvegicus clone CH230-36O20, WORKING DRAF... 32 4.7 2
(AC131103) Mus musculus BAC clone RP23-213K14 from chromosom... 32 4.8 2
(AC108421) Mus musculus chromosome 19, clone RP23-433N7, com... 32 4.8 2
(FP102664) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 32 4.8 2
(CR381647) Zebrafish DNA sequence from clone CH211-248G18 in... 32 4.8 2
(AC180451) Strongylocentrotus purpuratus clone R3-3103B15, W... 32 4.8 2
(AC184576) Strongylocentrotus purpuratus clone R3-3061F16, W... 32 4.8 2
(AC176028) Strongylocentrotus purpuratus clone R3-18E2, WORK... 32 4.8 2
(CO371382) tah62c04.y1 Hydra EST UCI 5 Hydra magnipapillata ... 34 4.8 2
(AP006309) Homo sapiens genomic DNA, chromosome 3 clone:RP11... 32 4.8 2
(AL590625) Mouse DNA sequence from clone RP23-467M8 on chrom... 32 4.8 2
(CT573230) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 4.8 4
(AC181907) Strongylocentrotus purpuratus clone R3-1012P21, W... 32 4.9 2
(AC177319) Strongylocentrotus purpuratus clone R3-1032P17, W... 32 4.9 2
(AC216458) Populus trichocarpa clone POP045-C13, complete se... 40 4.9 4
(AC181025) Strongylocentrotus purpuratus clone R3-3050M6, WO... 32 4.9 2
(AL731624) Oryza sativa genomic DNA, chromosome 4, BAC clone... 34 4.9 2
(AC178162) Strongylocentrotus purpuratus clone R3-3081I21, W... 32 4.9 2
(AC159873) Medicago truncatula chromosome 8 clone mth2-46p15... 34 4.9 2
(AC184651) Strongylocentrotus purpuratus clone R3-3075J8, WO... 40 4.9 2
(CR354440) Zebrafish DNA sequence from clone DKEYP-100B9 in ... 38 4.9 3
(AL645783) Mouse DNA sequence from clone RP23-459H16 on chro... 32 5.0 2
(AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 36 5.0 18
(FB571369) Sequence 236 from Patent EP1865317. 32 5.0 2
(FB571313) Sequence 180 from Patent EP1865317. 32 5.0 2
(FB571266) Sequence 133 from Patent EP1865317. 32 5.0 2
(AL592077) Zebrafish DNA sequence from clone XX-DZ35C18. 32 5.2 2
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 5.3 10
(AM476380) Vitis vinifera, whole genome shotgun sequence, co... 34 5.4 2
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 32 5.5 10
(AF396436) Tetrahymena thermophila strain SB210 mitochondrio... 34 5.5 5
(AY700145) Polysphondylium pallidum mitochondrion DNA, compl... 34 5.5 5
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7... 34 5.5 11
(AM461532) Vitis vinifera contig VV78X242991.8, whole genome... 34 5.5 2
(M34456) Dictyostelium discoideum GTP-binding protein SAS2 m... 34 5.6 3
(AM427903) Vitis vinifera contig VV78X222353.3, whole genome... 34 5.7 2
(AC222358) Bos taurus clone CH240-416C1, WORKING DRAFT SEQUE... 38 5.7 5
(AC217540) Homo sapiens FOSMID clone ABC13-48830900B13 from ... 42 5.8 3
(CS374589) Sequence 692 from Patent WO2006034879. 32 5.8 2
(DB776116) Apis mellifera head cDNA, RIKEN full-length enric... 32 5.8 3
(AC174135) Strongylocentrotus purpuratus clone R3-1004A20, W... 44 5.9 5
(AF289077) Homo sapiens chromosome 8 clone CTD-2003M15 map p... 42 6.0 5
(AC179808) Strongylocentrotus purpuratus clone R3-1014B22, W... 34 6.0 7
(AC180759) Strongylocentrotus purpuratus clone R3-3078P24, W... 40 6.0 7
(CE842297) tigr-gss-dog-17000332678490 Dog Library Canis lup... 36 6.0 2
(AC096425) Rattus norvegicus clone CH230-149B9, WORKING DRAF... 36 6.1 8
(AC144489) Gasterosteus aculeatus clone CH213-2D11, complete... 42 6.2 4
(ER823086) POTL185TF Solanum tuberosum RHPOTKEY BAC ends Sol... 38 6.3 2
(FG286656) 1108770723735 New World Screwworm Egg 9261 ESTs C... 32 6.4 2
(FG294233) 1108770704625 New World Screwworm Larvae 9387 EST... 32 6.4 2
(AC177392) Strongylocentrotus purpuratus clone R3-53E5, WORK... 42 6.4 5
(EY366058) CAXA10530.fwd CAXA Helobdella robusta Subtracted ... 32 6.4 2
(AC201215) Strongylocentrotus purpuratus clone R3-15E19, WOR... 38 6.4 5
(EY376864) CAXA16411.fwd CAXA Helobdella robusta Subtracted ... 34 6.5 2
(EY330704) CAWY3674.fwd CAWY Helobdella robusta Subtracted E... 34 6.5 2
(DH490983) Monosiga ovata DNA, fosmid clone: MOF-051F21, gen... 34 6.5 2
(EY330703) CAWY3674.rev CAWY Helobdella robusta Subtracted E... 34 6.5 2
(CT384726) Sus scrofa genomic clone CH242-421J15, genomic su... 32 6.5 2
(CL450042) ZMMBBb0474A04f ZMMBBb (HindIII) Zea mays subsp. m... 32 6.7 2
(AC179570) Strongylocentrotus purpuratus clone R3-8F5, WORKI... 38 6.7 4
(AM052286) Entodinium caudatum EST, clone Entodinium156E. 32 6.8 2
(EX494059) NC_EG200151e05.esd.z EG2 Schistosoma mansoni cDNA... 32 6.9 2
(DQ384439) Homo sapiens clone fa0658 genomic sequence. 42 6.9 3
(AZ722068) RPCI-24-140H22.TJ RPCI-24 Mus musculus genomic cl... 32 7.0 3
(AL355000) Human DNA sequence from clone RP11-78N10 on chrom... 42 7.0 5
(AC112172) Homo sapiens chromosome 5 clone CTD-2118P12, comp... 36 7.0 6
(AC176070) Strongylocentrotus purpuratus clone R3-1F22, WORK... 44 7.0 4
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 32 7.1 17
(AC067835) Homo sapiens chromosome 15 clone RP11-510B19 map ... 38 7.2 6
(AC094915) Rattus norvegicus clone CH230-6C23, WORKING DRAFT... 40 7.2 6
(AC181315) Strongylocentrotus purpuratus clone R3-4017M11, W... 44 7.3 5
(EK044471) 1092959541178 Global-Ocean-Sampling_GS-31-01-01-1... 42 7.3 2
(EJ341833) 1092963520332 Global-Ocean-Sampling_GS-28-01-01-1... 38 7.3 2
(AP006108) Lotus japonicus genomic DNA, chromosome 4, clone:... 40 7.4 5
(AC009707) Homo sapiens chromosome 8, clone RP11-315I17, com... 42 7.8 6
(DD010735) Diagnosis of known genetic Parameters within the ... 40 7.9 14
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 32 7.9 9
(EK244309) 1095460246353 Global-Ocean-Sampling_GS-31-01-01-1... 38 8.0 2
(AC130197) Felis catus clone RP86-564H6, WORKING DRAFT SEQUE... 40 8.1 4
(FE235032) CAPG3141.rev CAPG Naegleria gruberi amoeba stage ... 36 8.1 2
(AY372123) Plasmodium falciparum IT4_var4 erythrocyte membra... 42 8.3 3
(CU571374) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 8.5 5
(EK215168) 1095460116226 Global-Ocean-Sampling_GS-31-01-01-1... 38 8.5 2
(AC184404) Strongylocentrotus purpuratus clone R3-3110O2, WO... 40 8.6 5
(FP085482) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 8.7 7
(EJ140206) 1092343645280 Global-Ocean-Sampling_GS-27-01-01-1... 38 8.8 2
(AC140849) Medicago truncatula clone mth2-17f20, complete se... 32 8.8 6
(AP001679) Homo sapiens genomic DNA, chromosome 21q, section... 34 9.1 7
(BX001041) Zebrafish DNA sequence from clone CH211-62M7. 36 9.3 5
(AC125475) Medicago truncatula chromosome 8 clone mth2-5j2, ... 36 9.3 7
(AL160262) Human DNA sequence from clone RP1-138F4 on chromo... 36 9.7 3
(AX345533) Sequence 604 from Patent WO0200928. 34 9.7 4
(AL438891) T3 end of clone BD0AA001A10 of library BD0AA from... 40 9.7 2

>(BJ327372) Dictyostelium discoideum cDNA clone:dda20o01, 5' end,
single read.
Length = 651

Score = 295 bits (149), Expect(5) = 0.0
Identities = 149/149 (100%)
Strand = Plus / Plus


Query: 422 ggtggtgctaatccaccaccagtgcaattatttgaaaattataaaaatttatttagtaca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ggtggtgctaatccaccaccagtgcaattatttgaaaattataaaaatttatttagtaca 482


Query: 482 ataacaagtttaaaattaattcaaaaagttatgaaacatcatccatcaagaatttcttct 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ataacaagtttaaaattaattcaaaaagttatgaaacatcatccatcaagaatttcttct 542


Query: 542 ttatctgcttcaaaatctgctaatatttt 570
|||||||||||||||||||||||||||||
Sbjct: 543 ttatctgcttcaaaatctgctaatatttt 571

Score = 291 bits (147), Expect(5) = 0.0
Identities = 147/147 (100%)
Strand = Plus / Plus


Query: 186 caaagattatgtatgaatcaaatgcattggttttattatataaatgtttaaatcatgaat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 caaagattatgtatgaatcaaatgcattggttttattatataaatgtttaaatcatgaat 245


Query: 246 cagttgaaaagtatttattttcacaaaattatttaaatagtgaagagtatttcaatgaag 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cagttgaaaagtatttattttcacaaaattatttaaatagtgaagagtatttcaatgaag 305


Query: 306 aatcattaccatcatcatctgcagcat 332
|||||||||||||||||||||||||||
Sbjct: 306 aatcattaccatcatcatctgcagcat 332

Score = 244 bits (123), Expect(5) = 0.0
Identities = 123/123 (100%)
Strand = Plus / Plus


Query: 1 tttaattgcagagattgtaatagatcaatcatcaccaggttcttctgcatctttagttga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttaattgcagagattgtaatagatcaatcatcaccaggttcttctgcatctttagttga 60


Query: 61 aactatgcaatctgctattgactttttaagacataaagaaatcatttcaaaatcaacact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aactatgcaatctgctattgactttttaagacataaagaaatcatttcaaaatcaacact 120


Query: 121 tgg 123
|||
Sbjct: 121 tgg 123

Score = 145 bits (73), Expect(5) = 0.0
Identities = 73/73 (100%)
Strand = Plus / Plus


Query: 578 tattgttcaattaatcatccaatgattagattatatagtttaaaagttataaagaattta 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tattgttcaattaatcatccaatgattagattatatagtttaaaagttataaagaattta 638


Query: 638 gtaccatatcaaa 650
|||||||||||||
Sbjct: 639 gtaccatatcaaa 651

Score = 143 bits (72), Expect(5) = 0.0
Identities = 72/72 (100%)
Strand = Plus / Plus


Query: 350 atatttcaaccattaaattgtagtggtagtagtatcaatagtattagtagtggtggtgca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atatttcaaccattaaattgtagtggtagtagtatcaatagtattagtagtggtggtgca 409


Query: 410 ggttgtgaaggt 421
||||||||||||
Sbjct: 410 ggttgtgaaggt 421

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,228,272,205
Number of extensions: 79808616
Number of successful extensions: 7319577
Number of sequences better than 10.0: 297
Length of query: 982
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 958
Effective length of database: 99,340,224,878
Effective search space: 95167935433124
Effective search space used: 95167935433124
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.21
Homology vs Protein
Query= Contig-U02849-1 (Contig-U02849-1Q) /CSM_Contig/Contig-U02849-1Q.Seq.d
(982 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AM920435_1278(AM920435|pid:none) Penicillium chrysogenum Wiscons... 86 1e-15
T34206(T34206) hypothetical protein F10E7.8 - Caenorhabditis ele... 79 2e-13
AK148011_1(AK148011|pid:none) Mus musculus melanocyte cDNA, RIKE... 79 3e-13
AE014296_678(AE014296|pid:none) Drosophila melanogaster chromoso... 76 2e-12
AE014296_679(AE014296|pid:none) Drosophila melanogaster chromoso... 76 2e-12
AB463039_1(AB463039|pid:none) Synthetic construct DNA, clone: pF... 73 2e-11
AB032996_1(AB032996|pid:none) Homo sapiens mRNA for KIAA1170 pro... 73 2e-11
AK290165_1(AK290165|pid:none) Homo sapiens cDNA FLJ76770 complet... 73 2e-11
CT009716_1(CT009716|pid:none) Zebrafish DNA sequence from clone ... 71 5e-11
AL845526_1(AL845526|pid:none) Zebrafish DNA sequence from clone ... 71 5e-11
AK027649_1(AK027649|pid:none) Homo sapiens cDNA FLJ14743 fis, cl... 71 5e-11
(Q5R7S4) RecName: Full=Protein FAM40A; 71 6e-11
(Q8C079) RecName: Full=Protein FAM40A; 71 6e-11
AL160006_2(AL160006|pid:none) Human DNA sequence from clone RP4-... 71 6e-11
BC032644_1(BC032644|pid:none) Homo sapiens family with sequence ... 71 6e-11
AK032065_1(AK032065|pid:none) Mus musculus adult male medulla ob... 71 6e-11
(Q5VSL9) RecName: Full=Protein FAM40A; &AB051548_1(AB051548|pid... 71 6e-11
BC023952_1(BC023952|pid:none) Mus musculus family with sequence ... 71 6e-11
(Q0P5J8) RecName: Full=Protein FAM40A; &BC119950_1(BC119950|pid... 71 6e-11
CR860035_1(CR860035|pid:none) Pongo abelii mRNA; cDNA DKFZp459H1... 71 6e-11
(Q9GLZ5) Protein FAM40A. &AB050515_1(AB050515|pid:none) 71 6e-11
CR926057_1(CR926057|pid:none) Pongo abelii mRNA; cDNA DKFZp459A2... 71 6e-11
BC019919_1(BC019919|pid:none) Homo sapiens family with sequence ... 71 6e-11
AM392944_1(AM392944|pid:none) Synthetic construct Homo sapiens c... 71 6e-11
(Q803T2) RecName: Full=Protein FAM40A; &BC044205_1(BC044205|pid... 70 8e-11
BC096004_1(BC096004|pid:none) Xenopus tropicalis hypothetical pr... 69 2e-10
AJ627567_1(AJ627567|pid:none) Sordaria macrospora pro22 gene, ex... 69 3e-10
AL513467_15(AL513467|pid:none) Neurospora crassa DNA linkage gro... 69 3e-10
AP007164_128(AP007164|pid:none) Aspergillus oryzae RIB40 genomic... 65 4e-09
CU640366_1012(CU640366|pid:none) Podospora anserina genomic DNA ... 63 1e-08
CP000496_580(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 58 6e-07
AK122459_1(AK122459|pid:none) Mus musculus mRNA for mKIAA1170 pr... 58 6e-07
CR382134_268(CR382134|pid:none) Debaryomyces hansenii strain CBS... 55 5e-06
AP006852_248(AP006852|pid:none) Candida albicans genomic DNA, ch... 53 2e-05
FM992694_237(FM992694|pid:none) Candida dubliniensis CD36 chromo... 52 2e-05
BC099176_1(BC099176|pid:none) Rattus norvegicus family with sequ... 52 3e-05
AK122553_1(AK122553|pid:none) Mus musculus premature mRNA for mK... 52 3e-05
FN392320_952(FN392320|pid:none) Pichia pastoris GS115 chromosome... 49 2e-04
CU928179_254(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 49 3e-04
AY809872_1(AY809872|pid:none) Schistosoma japonicum SJCHGC08989 ... 47 0.001
Z69382_1(Z69382|pid:none) S.cerevisiae 37,800 bp segment of chro... 43 0.015
CU928166_218(CU928166|pid:none) Kluyveromyces thermotolerans str... 42 0.025
AE016820_708(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 42 0.032
FN357687_4(FN357687|pid:none) Schistosoma mansoni genome sequenc... 39 0.21
CR548612_348(CR548612|pid:none) Paramecium tetraurelia macronucl... 36 1.8
AE014133_1216(AE014133|pid:none) Streptococcus mutans UA159, com... 35 3.9

>AM920435_1278(AM920435|pid:none) Penicillium chrysogenum Wisconsin
54-1255 complete genome, contig Pc00c20.
Length = 1006

Score = 86.3 bits (212), Expect = 1e-15
Identities = 64/242 (26%), Positives = 109/242 (45%), Gaps = 4/242 (1%)
Frame = +2

Query: 20 IDQSSPGSSASLVETMQ-SAIDFLRHKEIISKSTLGILLLIINHSKFNQHLQFEYLSKIM 196
+ S GSS +L+ +D +R +EI K+ G LLL++ K + L+FEY+++++
Sbjct: 689 MSHSMNGSSHNLLSDASIDELDNIRLREITGKAVSGTLLLLLKWFKRSHILKFEYMTQLL 748

Query: 197 YESNALVLLYKCLNHESVEKYLFSQNY---LNSEEYFNEESLXXXXXXXXXXXXIFQPLX 367
+SN + L+ K H+ V++ + +N L+ EESL
Sbjct: 749 LDSNYIPLILKMFAHQDVDQTVAHKNDREDLSMPGLSEEESLTDIINGPARPEV------ 802

Query: 368 XXXXXXXXXXXXXXXXXXXXXNPPPVQLFENYKNLFSTITSLKLIQKVMKHHPXXXXXXX 547
P+++F +++N FS I L ++QK+ +
Sbjct: 803 -----------DELGYPTAPLPKEPIKVF-SFRNFFSAINYLHVMQKITRDKAHRCLLLV 850

Query: 548 XXXXXXXXXKYCSINHPMIRLYSLKVIKNLVPYQTKKWKQINMRIISDIYLEVPIHINDN 727
K I P +R Y+LK+ K+ VPY +KW+Q NMR+I+ IYL + D+
Sbjct: 851 QYKSSNILRKGLKIPDPHLRFYTLKLFKSQVPYCGRKWRQSNMRVITAIYLYCRPELRDD 910

Query: 728 WL 733
WL
Sbjct: 911 WL 912

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 988,287,649
Number of extensions: 14627313
Number of successful extensions: 69662
Number of sequences better than 10.0: 46
Number of HSP's gapped: 69630
Number of HSP's successfully gapped: 79
Length of query: 327
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 198
Effective length of database: 633,664,753
Effective search space: 125465621094
Effective search space used: 125465621094
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.48 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for Contig-U02849-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0